[1] "ofn"        "-oTSTAD-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/STAD-TP/22552605/STAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/STAD-TP/22815769/transformed.cor.cli.txt"

nPatients in clinical file=443, in cluster file=393, common to both=393
[1] "Reduce the number of clustering variables from 1195 to 1193."
[1] 1193  393
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
           188            205 
  TP53 MUTATED TP53 WILD-TYPE 
           188            205 
[1] "ARID1A MUTATION ANALYSIS"
[1] 3
  ARID1A MUTATED ARID1A WILD-TYPE 
              99              294 
  ARID1A MUTATED ARID1A WILD-TYPE 
              99              294 
[1] "RNF43 MUTATION ANALYSIS"
[1] 3
  RNF43 MUTATED RNF43 WILD-TYPE 
             45             348 
  RNF43 MUTATED RNF43 WILD-TYPE 
             45             348 
[1] "XYLT2 MUTATION ANALYSIS"
[1] 3
  XYLT2 MUTATED XYLT2 WILD-TYPE 
             38             355 
  XYLT2 MUTATED XYLT2 WILD-TYPE 
             38             355 
[1] "KRAS MUTATION ANALYSIS"
[1] 3
  KRAS MUTATED KRAS WILD-TYPE 
            37            356 
  KRAS MUTATED KRAS WILD-TYPE 
            37            356 
[1] "LARP4B MUTATION ANALYSIS"
[1] 3
  LARP4B MUTATED LARP4B WILD-TYPE 
              30              363 
  LARP4B MUTATED LARP4B WILD-TYPE 
              30              363 
[1] "HLA-B MUTATION ANALYSIS"
[1] 3
  HLA-B MUTATED HLA-B WILD-TYPE 
             28             365 
  HLA-B MUTATED HLA-B WILD-TYPE 
             28             365 
[1] "RHOA MUTATION ANALYSIS"
[1] 3
  RHOA MUTATED RHOA WILD-TYPE 
            19            374 
  RHOA MUTATED RHOA WILD-TYPE 
            19            374 
[1] "SMAD4 MUTATION ANALYSIS"
[1] 3
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             28             365 
  SMAD4 MUTATED SMAD4 WILD-TYPE 
             28             365 
[1] "B2M MUTATION ANALYSIS"
[1] 3
  B2M MUTATED B2M WILD-TYPE 
           18           375 
  B2M MUTATED B2M WILD-TYPE 
           18           375 
[1] "C7ORF50 MUTATION ANALYSIS"
[1] 3
  C7ORF50 MUTATED C7ORF50 WILD-TYPE 
               12               381 
  C7ORF50 MUTATED C7ORF50 WILD-TYPE 
               12               381 
[1] "MLL4 MUTATION ANALYSIS"
[1] 3
  MLL4 MUTATED MLL4 WILD-TYPE 
            45            348 
  MLL4 MUTATED MLL4 WILD-TYPE 
            45            348 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            30            363 
  PTEN MUTATED PTEN WILD-TYPE 
            30            363 
[1] "CDH1 MUTATION ANALYSIS"
[1] 3
  CDH1 MUTATED CDH1 WILD-TYPE 
            32            361 
  CDH1 MUTATED CDH1 WILD-TYPE 
            32            361 
[1] "GNG12 MUTATION ANALYSIS"
[1] 3
  GNG12 MUTATED GNG12 WILD-TYPE 
             12             381 
  GNG12 MUTATED GNG12 WILD-TYPE 
             12             381 
[1] "PGM5 MUTATION ANALYSIS"
[1] 3
  PGM5 MUTATED PGM5 WILD-TYPE 
            39            354 
  PGM5 MUTATED PGM5 WILD-TYPE 
            39            354 
[1] "CBWD1 MUTATION ANALYSIS"
[1] 3
  CBWD1 MUTATED CBWD1 WILD-TYPE 
             21             372 
  CBWD1 MUTATED CBWD1 WILD-TYPE 
             21             372 
[1] "ZBTB20 MUTATION ANALYSIS"
[1] 3
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              37              356 
  ZBTB20 MUTATED ZBTB20 WILD-TYPE 
              37              356 
[1] "ARID4A MUTATION ANALYSIS"
[1] 3
  ARID4A MUTATED ARID4A WILD-TYPE 
              22              371 
  ARID4A MUTATED ARID4A WILD-TYPE 
              22              371 
[1] "MLL2 MUTATION ANALYSIS"
[1] 3
  MLL2 MUTATED MLL2 WILD-TYPE 
            67            326 
  MLL2 MUTATED MLL2 WILD-TYPE 
            67            326 
[1] "FBXW7 MUTATION ANALYSIS"
[1] 3
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             32             361 
  FBXW7 MUTATED FBXW7 WILD-TYPE 
             32             361 
[1] "MBD6 MUTATION ANALYSIS"
[1] 3
  MBD6 MUTATED MBD6 WILD-TYPE 
            24            369 
  MBD6 MUTATED MBD6 WILD-TYPE 
            24            369 
[1] "MUC6 MUTATION ANALYSIS"
[1] 3
  MUC6 MUTATED MUC6 WILD-TYPE 
            46            347 
  MUC6 MUTATED MUC6 WILD-TYPE 
            46            347 
[1] "DDX17 MUTATION ANALYSIS"
[1] 3
  DDX17 MUTATED DDX17 WILD-TYPE 
             15             378 
  DDX17 MUTATED DDX17 WILD-TYPE 
             15             378 
[1] "HOXD8 MUTATION ANALYSIS"
[1] 3
  HOXD8 MUTATED HOXD8 WILD-TYPE 
             13             380 
  HOXD8 MUTATED HOXD8 WILD-TYPE 
             13             380 
[1] "ZBTB7C MUTATION ANALYSIS"
[1] 3
  ZBTB7C MUTATED ZBTB7C WILD-TYPE 
              17              376 
  ZBTB7C MUTATED ZBTB7C WILD-TYPE 
              17              376 
[1] "KLF3 MUTATION ANALYSIS"
[1] 3
  KLF3 MUTATED KLF3 WILD-TYPE 
            19            374 
  KLF3 MUTATED KLF3 WILD-TYPE 
            19            374 
[1] "TENC1 MUTATION ANALYSIS"
[1] 3
  TENC1 MUTATED TENC1 WILD-TYPE 
             20             373 
  TENC1 MUTATED TENC1 WILD-TYPE 
             20             373 
[1] "MTG1 MUTATION ANALYSIS"
[1] 3
  MTG1 MUTATED MTG1 WILD-TYPE 
             9            384 
  MTG1 MUTATED MTG1 WILD-TYPE 
             9            384 
[1] "LARP7 MUTATION ANALYSIS"
[1] 3
  LARP7 MUTATED LARP7 WILD-TYPE 
             18             375 
  LARP7 MUTATED LARP7 WILD-TYPE 
             18             375 
[1] "MVK MUTATION ANALYSIS"
[1] 3
  MVK MUTATED MVK WILD-TYPE 
           15           378 
  MVK MUTATED MVK WILD-TYPE 
           15           378 
[1] "KIAA0406 MUTATION ANALYSIS"
[1] 3
  KIAA0406 MUTATED KIAA0406 WILD-TYPE 
                23                370 
  KIAA0406 MUTATED KIAA0406 WILD-TYPE 
                23                370 
[1] "FRMD4A MUTATION ANALYSIS"
[1] 3
  FRMD4A MUTATED FRMD4A WILD-TYPE 
              21              372 
  FRMD4A MUTATED FRMD4A WILD-TYPE 
              21              372 
[1] "MCM8 MUTATION ANALYSIS"
[1] 3
  MCM8 MUTATED MCM8 WILD-TYPE 
            25            368 
  MCM8 MUTATED MCM8 WILD-TYPE 
            25            368 
[1] "APC MUTATION ANALYSIS"
[1] 3
  APC MUTATED APC WILD-TYPE 
           48           345 
  APC MUTATED APC WILD-TYPE 
           48           345 
[1] "TRIP4 MUTATION ANALYSIS"
[1] 3
  TRIP4 MUTATED TRIP4 WILD-TYPE 
             12             381 
  TRIP4 MUTATED TRIP4 WILD-TYPE 
             12             381 
[1] "CTNND1 MUTATION ANALYSIS"
[1] 3
  CTNND1 MUTATED CTNND1 WILD-TYPE 
              24              369 
  CTNND1 MUTATED CTNND1 WILD-TYPE 
              24              369 
[1] "FAM9A MUTATION ANALYSIS"
[1] 3
  FAM9A MUTATED FAM9A WILD-TYPE 
             12             381 
  FAM9A MUTATED FAM9A WILD-TYPE 
             12             381 
[1] "SLC27A3 MUTATION ANALYSIS"
[1] 3
  SLC27A3 MUTATED SLC27A3 WILD-TYPE 
                9               384 
  SLC27A3 MUTATED SLC27A3 WILD-TYPE 
                9               384 
[1] "PAX6 MUTATION ANALYSIS"
[1] 3
  PAX6 MUTATED PAX6 WILD-TYPE 
            20            373 
  PAX6 MUTATED PAX6 WILD-TYPE 
            20            373 
[1] "KRT75 MUTATION ANALYSIS"
[1] 3
  KRT75 MUTATED KRT75 WILD-TYPE 
             37             356 
  KRT75 MUTATED KRT75 WILD-TYPE 
             37             356 
[1] "P4HTM MUTATION ANALYSIS"
[1] 3
  P4HTM MUTATED P4HTM WILD-TYPE 
             26             367 
  P4HTM MUTATED P4HTM WILD-TYPE 
             26             367 
[1] "DSTN MUTATION ANALYSIS"
[1] 3
  DSTN MUTATED DSTN WILD-TYPE 
             7            386 
  DSTN MUTATED DSTN WILD-TYPE 
             7            386 
[1] "CIC MUTATION ANALYSIS"
[1] 3
  CIC MUTATED CIC WILD-TYPE 
           47           346 
  CIC MUTATED CIC WILD-TYPE 
           47           346 
[1] "OSBP2 MUTATION ANALYSIS"
[1] 3
  OSBP2 MUTATED OSBP2 WILD-TYPE 
             15             378 
  OSBP2 MUTATED OSBP2 WILD-TYPE 
             15             378 
[1] "CEP57 MUTATION ANALYSIS"
[1] 3
  CEP57 MUTATED CEP57 WILD-TYPE 
             13             380 
  CEP57 MUTATED CEP57 WILD-TYPE 
             13             380 
[1] "PRRG1 MUTATION ANALYSIS"
[1] 3
  PRRG1 MUTATED PRRG1 WILD-TYPE 
             10             383 
  PRRG1 MUTATED PRRG1 WILD-TYPE 
             10             383 
[1] "BCOR MUTATION ANALYSIS"
[1] 3
  BCOR MUTATED BCOR WILD-TYPE 
            28            365 
  BCOR MUTATED BCOR WILD-TYPE 
            28            365 
[1] "KIAA1967 MUTATION ANALYSIS"
[1] 3
  KIAA1967 MUTATED KIAA1967 WILD-TYPE 
                22                371 
  KIAA1967 MUTATED KIAA1967 WILD-TYPE 
                22                371 
[1] "KIAA1267 MUTATION ANALYSIS"
[1] 3
  KIAA1267 MUTATED KIAA1267 WILD-TYPE 
                19                374 
  KIAA1267 MUTATED KIAA1267 WILD-TYPE 
                19                374 
[1] "ZNF48 MUTATION ANALYSIS"
[1] 3
  ZNF48 MUTATED ZNF48 WILD-TYPE 
             13             380 
  ZNF48 MUTATED ZNF48 WILD-TYPE 
             13             380 
[1] "WASF3 MUTATION ANALYSIS"
[1] 3
  WASF3 MUTATED WASF3 WILD-TYPE 
             19             374 
  WASF3 MUTATED WASF3 WILD-TYPE 
             19             374 
[1] "NLK MUTATION ANALYSIS"
[1] 3
  NLK MUTATED NLK WILD-TYPE 
           14           379 
  NLK MUTATED NLK WILD-TYPE 
           14           379 
[1] "CYP27B1 MUTATION ANALYSIS"
[1] 3
  CYP27B1 MUTATED CYP27B1 WILD-TYPE 
                9               384 
  CYP27B1 MUTATED CYP27B1 WILD-TYPE 
                9               384 
[1] "C14ORF43 MUTATION ANALYSIS"
[1] 3
  C14ORF43 MUTATED C14ORF43 WILD-TYPE 
                26                367 
  C14ORF43 MUTATED C14ORF43 WILD-TYPE 
                26                367 
[1] "PRSS36 MUTATION ANALYSIS"
[1] 3
  PRSS36 MUTATED PRSS36 WILD-TYPE 
              16              377 
  PRSS36 MUTATED PRSS36 WILD-TYPE 
              16              377 
[1] "FZD3 MUTATION ANALYSIS"
[1] 3
  FZD3 MUTATED FZD3 WILD-TYPE 
            11            382 
  FZD3 MUTATED FZD3 WILD-TYPE 
            11            382 
[1] "NFASC MUTATION ANALYSIS"
[1] 3
  NFASC MUTATED NFASC WILD-TYPE 
             31             362 
  NFASC MUTATED NFASC WILD-TYPE 
             31             362 
[1] "GRK4 MUTATION ANALYSIS"
[1] 3
  GRK4 MUTATED GRK4 WILD-TYPE 
            11            382 
  GRK4 MUTATED GRK4 WILD-TYPE 
            11            382 
[1] "ATXN2L MUTATION ANALYSIS"
[1] 3
  ATXN2L MUTATED ATXN2L WILD-TYPE 
              23              370 
  ATXN2L MUTATED ATXN2L WILD-TYPE 
              23              370 
[1] "GLI1 MUTATION ANALYSIS"
[1] 3
  GLI1 MUTATED GLI1 WILD-TYPE 
            20            373 
  GLI1 MUTATED GLI1 WILD-TYPE 
            20            373 
[1] "INPPL1 MUTATION ANALYSIS"
[1] 3
  INPPL1 MUTATED INPPL1 WILD-TYPE 
              24              369 
  INPPL1 MUTATED INPPL1 WILD-TYPE 
              24              369 
[1] "SOX7 MUTATION ANALYSIS"
[1] 3
  SOX7 MUTATED SOX7 WILD-TYPE 
            19            374 
  SOX7 MUTATED SOX7 WILD-TYPE 
            19            374 
[1] "FHOD3 MUTATION ANALYSIS"
[1] 3
  FHOD3 MUTATED FHOD3 WILD-TYPE 
             30             363 
  FHOD3 MUTATED FHOD3 WILD-TYPE 
             30             363 
[1] "RNF128 MUTATION ANALYSIS"
[1] 3
  RNF128 MUTATED RNF128 WILD-TYPE 
              14              379 
  RNF128 MUTATED RNF128 WILD-TYPE 
              14              379 
[1] "HLA-A MUTATION ANALYSIS"
[1] 3
  HLA-A MUTATED HLA-A WILD-TYPE 
             19             374 
  HLA-A MUTATED HLA-A WILD-TYPE 
             19             374 
[1] "MFRP MUTATION ANALYSIS"
[1] 3
  MFRP MUTATED MFRP WILD-TYPE 
            15            378 
  MFRP MUTATED MFRP WILD-TYPE 
            15            378 
[1] "EIF5B MUTATION ANALYSIS"
[1] 3
  EIF5B MUTATED EIF5B WILD-TYPE 
             25             368 
  EIF5B MUTATED EIF5B WILD-TYPE 
             25             368 
[1] "C9ORF131 MUTATION ANALYSIS"
[1] 3
  C9ORF131 MUTATED C9ORF131 WILD-TYPE 
                19                374 
  C9ORF131 MUTATED C9ORF131 WILD-TYPE 
                19                374 
[1] "BCORL1 MUTATION ANALYSIS"
[1] 3
  BCORL1 MUTATED BCORL1 WILD-TYPE 
              26              367 
  BCORL1 MUTATED BCORL1 WILD-TYPE 
              26              367 
[1] "PAFAH1B1 MUTATION ANALYSIS"
[1] 3
  PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE 
                15                378 
  PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE 
                15                378 
[1] "EPB49 MUTATION ANALYSIS"
[1] 3
  EPB49 MUTATED EPB49 WILD-TYPE 
             13             380 
  EPB49 MUTATED EPB49 WILD-TYPE 
             13             380 
[1] "DDC MUTATION ANALYSIS"
[1] 3
  DDC MUTATED DDC WILD-TYPE 
           10           383 
  DDC MUTATED DDC WILD-TYPE 
           10           383 
[1] "IWS1 MUTATION ANALYSIS"
[1] 3
  IWS1 MUTATED IWS1 WILD-TYPE 
            14            379 
  IWS1 MUTATED IWS1 WILD-TYPE 
            14            379 
[1] "LMAN1 MUTATION ANALYSIS"
[1] 3
  LMAN1 MUTATED LMAN1 WILD-TYPE 
             13             380 
  LMAN1 MUTATED LMAN1 WILD-TYPE 
             13             380 
[1] "FAM116A MUTATION ANALYSIS"
[1] 3
  FAM116A MUTATED FAM116A WILD-TYPE 
                9               384 
  FAM116A MUTATED FAM116A WILD-TYPE 
                9               384 
[1] "KIAA0664 MUTATION ANALYSIS"
[1] 3
  KIAA0664 MUTATED KIAA0664 WILD-TYPE 
                23                370 
  KIAA0664 MUTATED KIAA0664 WILD-TYPE 
                23                370 
[1] "JARID2 MUTATION ANALYSIS"
[1] 3
  JARID2 MUTATED JARID2 WILD-TYPE 
              36              357 
  JARID2 MUTATED JARID2 WILD-TYPE 
              36              357 
[1] "SLC9A10 MUTATION ANALYSIS"
[1] 3
  SLC9A10 MUTATED SLC9A10 WILD-TYPE 
               13               380 
  SLC9A10 MUTATED SLC9A10 WILD-TYPE 
               13               380 
[1] "ZFP36L2 MUTATION ANALYSIS"
[1] 3
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
               14               379 
  ZFP36L2 MUTATED ZFP36L2 WILD-TYPE 
               14               379 
[1] "CTCF MUTATION ANALYSIS"
[1] 3
  CTCF MUTATED CTCF WILD-TYPE 
            16            377 
  CTCF MUTATED CTCF WILD-TYPE 
            16            377 
[1] "HDAC4 MUTATION ANALYSIS"
[1] 3
  HDAC4 MUTATED HDAC4 WILD-TYPE 
             26             367 
  HDAC4 MUTATED HDAC4 WILD-TYPE 
             26             367 
[1] "NAPEPLD MUTATION ANALYSIS"
[1] 3
  NAPEPLD MUTATED NAPEPLD WILD-TYPE 
               10               383 
  NAPEPLD MUTATED NAPEPLD WILD-TYPE 
               10               383 
[1] "RASA1 MUTATION ANALYSIS"
[1] 3
  RASA1 MUTATED RASA1 WILD-TYPE 
             19             374 
  RASA1 MUTATED RASA1 WILD-TYPE 
             19             374 
[1] "RHOQ MUTATION ANALYSIS"
[1] 3
  RHOQ MUTATED RHOQ WILD-TYPE 
             5            388 
  RHOQ MUTATED RHOQ WILD-TYPE 
             5            388 
[1] "NT5M MUTATION ANALYSIS"
[1] 3
  NT5M MUTATED NT5M WILD-TYPE 
             6            387 
  NT5M MUTATED NT5M WILD-TYPE 
             6            387 
[1] "CELSR1 MUTATION ANALYSIS"
[1] 3
  CELSR1 MUTATED CELSR1 WILD-TYPE 
              37              356 
  CELSR1 MUTATED CELSR1 WILD-TYPE 
              37              356 
[1] "YIPF2 MUTATION ANALYSIS"
[1] 3
  YIPF2 MUTATED YIPF2 WILD-TYPE 
              7             386 
  YIPF2 MUTATED YIPF2 WILD-TYPE 
              7             386 
[1] "CR1 MUTATION ANALYSIS"
[1] 3
  CR1 MUTATED CR1 WILD-TYPE 
           30           363 
  CR1 MUTATED CR1 WILD-TYPE 
           30           363 
[1] "C19ORF40 MUTATION ANALYSIS"
[1] 3
  C19ORF40 MUTATED C19ORF40 WILD-TYPE 
                 7                386 
  C19ORF40 MUTATED C19ORF40 WILD-TYPE 
                 7                386 
[1] "WNT1 MUTATION ANALYSIS"
[1] 3
  WNT1 MUTATED WNT1 WILD-TYPE 
            10            383 
  WNT1 MUTATED WNT1 WILD-TYPE 
            10            383 
[1] "IRF2 MUTATION ANALYSIS"
[1] 3
  IRF2 MUTATED IRF2 WILD-TYPE 
            19            374 
  IRF2 MUTATED IRF2 WILD-TYPE 
            19            374 
[1] "CR2 MUTATION ANALYSIS"
[1] 3
  CR2 MUTATED CR2 WILD-TYPE 
           23           370 
  CR2 MUTATED CR2 WILD-TYPE 
           23           370 
[1] "LEMD1 MUTATION ANALYSIS"
[1] 3
  LEMD1 MUTATED LEMD1 WILD-TYPE 
              4             389 
  LEMD1 MUTATED LEMD1 WILD-TYPE 
              4             389 
[1] "INF2 MUTATION ANALYSIS"
[1] 3
  INF2 MUTATED INF2 WILD-TYPE 
            19            374 
  INF2 MUTATED INF2 WILD-TYPE 
            19            374 
[1] "CR1L MUTATION ANALYSIS"
[1] 3
  CR1L MUTATED CR1L WILD-TYPE 
            16            377 
  CR1L MUTATED CR1L WILD-TYPE 
            16            377 
[1] "NPHP1 MUTATION ANALYSIS"
[1] 3
  NPHP1 MUTATED NPHP1 WILD-TYPE 
             10             383 
  NPHP1 MUTATED NPHP1 WILD-TYPE 
             10             383 
[1] "ADAMDEC1 MUTATION ANALYSIS"
[1] 3
  ADAMDEC1 MUTATED ADAMDEC1 WILD-TYPE 
                12                381 
  ADAMDEC1 MUTATED ADAMDEC1 WILD-TYPE 
                12                381 
[1] "GXYLT1 MUTATION ANALYSIS"
[1] 3
  GXYLT1 MUTATED GXYLT1 WILD-TYPE 
              14              379 
  GXYLT1 MUTATED GXYLT1 WILD-TYPE 
              14              379 
[1] "ENTPD2 MUTATION ANALYSIS"
[1] 3
  ENTPD2 MUTATED ENTPD2 WILD-TYPE 
               6              387 
  ENTPD2 MUTATED ENTPD2 WILD-TYPE 
               6              387 
[1] "EIF4G3 MUTATION ANALYSIS"
[1] 3
  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
              20              373 
  EIF4G3 MUTATED EIF4G3 WILD-TYPE 
              20              373 
[1] "PIGT MUTATION ANALYSIS"
[1] 3
  PIGT MUTATED PIGT WILD-TYPE 
            11            382 
  PIGT MUTATED PIGT WILD-TYPE 
            11            382 
[1] "POLM MUTATION ANALYSIS"
[1] 3
  POLM MUTATED POLM WILD-TYPE 
            13            380 
  POLM MUTATED POLM WILD-TYPE 
            13            380 
[1] "CCDC108 MUTATION ANALYSIS"
[1] 3
  CCDC108 MUTATED CCDC108 WILD-TYPE 
               26               367 
  CCDC108 MUTATED CCDC108 WILD-TYPE 
               26               367 
[1] "KIAA0195 MUTATION ANALYSIS"
[1] 3
  KIAA0195 MUTATED KIAA0195 WILD-TYPE 
                20                373 
  KIAA0195 MUTATED KIAA0195 WILD-TYPE 
                20                373 
[1] "CDH16 MUTATION ANALYSIS"
[1] 3
  CDH16 MUTATED CDH16 WILD-TYPE 
             16             377 
  CDH16 MUTATED CDH16 WILD-TYPE 
             16             377 
[1] "ARHGAP5 MUTATION ANALYSIS"
[1] 3
  ARHGAP5 MUTATED ARHGAP5 WILD-TYPE 
               22               371 
  ARHGAP5 MUTATED ARHGAP5 WILD-TYPE 
               22               371 
[1] "STK38 MUTATION ANALYSIS"
[1] 3
  STK38 MUTATED STK38 WILD-TYPE 
              6             387 
  STK38 MUTATED STK38 WILD-TYPE 
              6             387 
[1] "CST1 MUTATION ANALYSIS"
[1] 3
  CST1 MUTATED CST1 WILD-TYPE 
             7            386 
  CST1 MUTATED CST1 WILD-TYPE 
             7            386 
[1] "PTCHD3 MUTATION ANALYSIS"
[1] 3
  PTCHD3 MUTATED PTCHD3 WILD-TYPE 
              19              374 
  PTCHD3 MUTATED PTCHD3 WILD-TYPE 
              19              374 
[1] "TBX4 MUTATION ANALYSIS"
[1] 3
  TBX4 MUTATED TBX4 WILD-TYPE 
            14            379 
  TBX4 MUTATED TBX4 WILD-TYPE 
            14            379 
[1] "ZMYM4 MUTATION ANALYSIS"
[1] 3
  ZMYM4 MUTATED ZMYM4 WILD-TYPE 
             19             374 
  ZMYM4 MUTATED ZMYM4 WILD-TYPE 
             19             374 
[1] "SPTY2D1 MUTATION ANALYSIS"
[1] 3
  SPTY2D1 MUTATED SPTY2D1 WILD-TYPE 
               19               374 
  SPTY2D1 MUTATED SPTY2D1 WILD-TYPE 
               19               374 
[1] "SLC12A9 MUTATION ANALYSIS"
[1] 3
  SLC12A9 MUTATED SLC12A9 WILD-TYPE 
               20               373 
  SLC12A9 MUTATED SLC12A9 WILD-TYPE 
               20               373 
[1] "ALPK2 MUTATION ANALYSIS"
[1] 3
  ALPK2 MUTATED ALPK2 WILD-TYPE 
             24             369 
  ALPK2 MUTATED ALPK2 WILD-TYPE 
             24             369 
[1] "CABP5 MUTATION ANALYSIS"
[1] 3
  CABP5 MUTATED CABP5 WILD-TYPE 
              6             387 
  CABP5 MUTATED CABP5 WILD-TYPE 
              6             387 
[1] "MED15 MUTATION ANALYSIS"
[1] 3
  MED15 MUTATED MED15 WILD-TYPE 
             18             375 
  MED15 MUTATED MED15 WILD-TYPE 
             18             375 
[1] "GYLTL1B MUTATION ANALYSIS"
[1] 3
  GYLTL1B MUTATED GYLTL1B WILD-TYPE 
               17               376 
  GYLTL1B MUTATED GYLTL1B WILD-TYPE 
               17               376 
[1] "IL2RG MUTATION ANALYSIS"
[1] 3
  IL2RG MUTATED IL2RG WILD-TYPE 
             10             383 
  IL2RG MUTATED IL2RG WILD-TYPE 
             10             383 
[1] "CCDC88A MUTATION ANALYSIS"
[1] 3
  CCDC88A MUTATED CCDC88A WILD-TYPE 
               22               371 
  CCDC88A MUTATED CCDC88A WILD-TYPE 
               22               371 
[1] "PIGB MUTATION ANALYSIS"
[1] 3
  PIGB MUTATED PIGB WILD-TYPE 
            10            383 
  PIGB MUTATED PIGB WILD-TYPE 
            10            383 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              65              328 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              65              328 
[1] "PPIG MUTATION ANALYSIS"
[1] 3
  PPIG MUTATED PPIG WILD-TYPE 
            18            375 
  PPIG MUTATED PPIG WILD-TYPE 
            18            375 
[1] "ATP6V1B1 MUTATION ANALYSIS"
[1] 3
  ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE 
                21                372 
  ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE 
                21                372 
[1] "PLEKHA6 MUTATION ANALYSIS"
[1] 3
  PLEKHA6 MUTATED PLEKHA6 WILD-TYPE 
               23               370 
  PLEKHA6 MUTATED PLEKHA6 WILD-TYPE 
               23               370 
[1] "PLA2G1B MUTATION ANALYSIS"
[1] 3
  PLA2G1B MUTATED PLA2G1B WILD-TYPE 
                6               387 
  PLA2G1B MUTATED PLA2G1B WILD-TYPE 
                6               387 
[1] "RTKN2 MUTATION ANALYSIS"
[1] 3
  RTKN2 MUTATED RTKN2 WILD-TYPE 
             11             382 
  RTKN2 MUTATED RTKN2 WILD-TYPE 
             11             382 
[1] "PAX2 MUTATION ANALYSIS"
[1] 3
  PAX2 MUTATED PAX2 WILD-TYPE 
            12            381 
  PAX2 MUTATED PAX2 WILD-TYPE 
            12            381 
[1] "SERPINI1 MUTATION ANALYSIS"
[1] 3
  SERPINI1 MUTATED SERPINI1 WILD-TYPE 
                 9                384 
  SERPINI1 MUTATED SERPINI1 WILD-TYPE 
                 9                384 
[1] "TMEM41A MUTATION ANALYSIS"
[1] 3
  TMEM41A MUTATED TMEM41A WILD-TYPE 
                9               384 
  TMEM41A MUTATED TMEM41A WILD-TYPE 
                9               384 
[1] "ADAM30 MUTATION ANALYSIS"
[1] 3
  ADAM30 MUTATED ADAM30 WILD-TYPE 
              16              377 
  ADAM30 MUTATED ADAM30 WILD-TYPE 
              16              377 
[1] "B3GNT5 MUTATION ANALYSIS"
[1] 3
  B3GNT5 MUTATED B3GNT5 WILD-TYPE 
              11              382 
  B3GNT5 MUTATED B3GNT5 WILD-TYPE 
              11              382 
[1] "PAPD4 MUTATION ANALYSIS"
[1] 3
  PAPD4 MUTATED PAPD4 WILD-TYPE 
             11             382 
  PAPD4 MUTATED PAPD4 WILD-TYPE 
             11             382 
[1] "DTX3 MUTATION ANALYSIS"
[1] 3
  DTX3 MUTATED DTX3 WILD-TYPE 
             7            386 
  DTX3 MUTATED DTX3 WILD-TYPE 
             7            386 
[1] "BTBD11 MUTATION ANALYSIS"
[1] 3
  BTBD11 MUTATED BTBD11 WILD-TYPE 
              26              367 
  BTBD11 MUTATED BTBD11 WILD-TYPE 
              26              367 
[1] "ART1 MUTATION ANALYSIS"
[1] 3
  ART1 MUTATED ART1 WILD-TYPE 
             8            385 
  ART1 MUTATED ART1 WILD-TYPE 
             8            385 
[1] "BRD8 MUTATION ANALYSIS"
[1] 3
  BRD8 MUTATED BRD8 WILD-TYPE 
            32            361 
  BRD8 MUTATED BRD8 WILD-TYPE 
            32            361 
[1] "FOXN3 MUTATION ANALYSIS"
[1] 3
  FOXN3 MUTATED FOXN3 WILD-TYPE 
             13             380 
  FOXN3 MUTATED FOXN3 WILD-TYPE 
             13             380 
[1] "SPG20 MUTATION ANALYSIS"
[1] 3
  SPG20 MUTATED SPG20 WILD-TYPE 
             22             371 
  SPG20 MUTATED SPG20 WILD-TYPE 
             22             371 
[1] "WNK4 MUTATION ANALYSIS"
[1] 3
  WNK4 MUTATED WNK4 WILD-TYPE 
            24            369 
  WNK4 MUTATED WNK4 WILD-TYPE 
            24            369 
[1] "CBLL1 MUTATION ANALYSIS"
[1] 3
  CBLL1 MUTATED CBLL1 WILD-TYPE 
              8             385 
  CBLL1 MUTATED CBLL1 WILD-TYPE 
              8             385 
[1] "TTF1 MUTATION ANALYSIS"
[1] 3
  TTF1 MUTATED TTF1 WILD-TYPE 
            16            377 
  TTF1 MUTATED TTF1 WILD-TYPE 
            16            377 
[1] "SCLT1 MUTATION ANALYSIS"
[1] 3
  SCLT1 MUTATED SCLT1 WILD-TYPE 
             17             376 
  SCLT1 MUTATED SCLT1 WILD-TYPE 
             17             376 
[1] "PALB2 MUTATION ANALYSIS"
[1] 3
  PALB2 MUTATED PALB2 WILD-TYPE 
             11             382 
  PALB2 MUTATED PALB2 WILD-TYPE 
             11             382 
[1] "ABCC4 MUTATION ANALYSIS"
[1] 3
  ABCC4 MUTATED ABCC4 WILD-TYPE 
             19             374 
  ABCC4 MUTATED ABCC4 WILD-TYPE 
             19             374 
[1] "EAF2 MUTATION ANALYSIS"
[1] 3
  EAF2 MUTATED EAF2 WILD-TYPE 
             9            384 
  EAF2 MUTATED EAF2 WILD-TYPE 
             9            384 
[1] "FAAH MUTATION ANALYSIS"
[1] 3
  FAAH MUTATED FAAH WILD-TYPE 
             5            388 
  FAAH MUTATED FAAH WILD-TYPE 
             5            388 
[1] "BTBD7 MUTATION ANALYSIS"
[1] 3
  BTBD7 MUTATED BTBD7 WILD-TYPE 
             20             373 
  BTBD7 MUTATED BTBD7 WILD-TYPE 
             20             373 
[1] "MAGEE2 MUTATION ANALYSIS"
[1] 3
  MAGEE2 MUTATED MAGEE2 WILD-TYPE 
              11              382 
  MAGEE2 MUTATED MAGEE2 WILD-TYPE 
              11              382 
[1] "DOCK5 MUTATION ANALYSIS"
[1] 3
  DOCK5 MUTATED DOCK5 WILD-TYPE 
             25             368 
  DOCK5 MUTATED DOCK5 WILD-TYPE 
             25             368 
[1] "ZFHX4 MUTATION ANALYSIS"
[1] 3
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             68             325 
  ZFHX4 MUTATED ZFHX4 WILD-TYPE 
             68             325 
[1] "FHDC1 MUTATION ANALYSIS"
[1] 3
  FHDC1 MUTATED FHDC1 WILD-TYPE 
             17             376 
  FHDC1 MUTATED FHDC1 WILD-TYPE 
             17             376 
[1] "RB1CC1 MUTATION ANALYSIS"
[1] 3
  RB1CC1 MUTATED RB1CC1 WILD-TYPE 
              15              378 
  RB1CC1 MUTATED RB1CC1 WILD-TYPE 
              15              378 
[1] "PRRG3 MUTATION ANALYSIS"
[1] 3
  PRRG3 MUTATED PRRG3 WILD-TYPE 
              8             385 
  PRRG3 MUTATED PRRG3 WILD-TYPE 
              8             385 
[1] "KIAA1462 MUTATION ANALYSIS"
[1] 3
  KIAA1462 MUTATED KIAA1462 WILD-TYPE 
                24                369 
  KIAA1462 MUTATED KIAA1462 WILD-TYPE 
                24                369 
[1] "KCNJ10 MUTATION ANALYSIS"
[1] 3
  KCNJ10 MUTATED KCNJ10 WILD-TYPE 
              14              379 
  KCNJ10 MUTATED KCNJ10 WILD-TYPE 
              14              379 
[1] "GANAB MUTATION ANALYSIS"
[1] 3
  GANAB MUTATED GANAB WILD-TYPE 
             18             375 
  GANAB MUTATED GANAB WILD-TYPE 
             18             375 
[1] "GPSM3 MUTATION ANALYSIS"
[1] 3
  GPSM3 MUTATED GPSM3 WILD-TYPE 
             12             381 
  GPSM3 MUTATED GPSM3 WILD-TYPE 
             12             381 
[1] "WNT16 MUTATION ANALYSIS"
[1] 3
  WNT16 MUTATED WNT16 WILD-TYPE 
             12             381 
  WNT16 MUTATED WNT16 WILD-TYPE 
             12             381 
[1] "KIRREL MUTATION ANALYSIS"
[1] 3
  KIRREL MUTATED KIRREL WILD-TYPE 
              20              373 
  KIRREL MUTATED KIRREL WILD-TYPE 
              20              373 
[1] "MTMR9 MUTATION ANALYSIS"
[1] 3
  MTMR9 MUTATED MTMR9 WILD-TYPE 
             13             380 
  MTMR9 MUTATED MTMR9 WILD-TYPE 
             13             380 
[1] "FAHD2B MUTATION ANALYSIS"
[1] 3
  FAHD2B MUTATED FAHD2B WILD-TYPE 
               9              384 
  FAHD2B MUTATED FAHD2B WILD-TYPE 
               9              384 
[1] "KLRK1 MUTATION ANALYSIS"
[1] 3
  KLRK1 MUTATED KLRK1 WILD-TYPE 
              5             388 
  KLRK1 MUTATED KLRK1 WILD-TYPE 
              5             388 
[1] "KLC2 MUTATION ANALYSIS"
[1] 3
  KLC2 MUTATED KLC2 WILD-TYPE 
            14            379 
  KLC2 MUTATED KLC2 WILD-TYPE 
            14            379 
[1] "WDR7 MUTATION ANALYSIS"
[1] 3
  WDR7 MUTATED WDR7 WILD-TYPE 
            22            371 
  WDR7 MUTATED WDR7 WILD-TYPE 
            22            371 
[1] "TCHP MUTATION ANALYSIS"
[1] 3
  TCHP MUTATED TCHP WILD-TYPE 
            12            381 
  TCHP MUTATED TCHP WILD-TYPE 
            12            381 
[1] "SNRK MUTATION ANALYSIS"
[1] 3
  SNRK MUTATED SNRK WILD-TYPE 
            16            377 
  SNRK MUTATED SNRK WILD-TYPE 
            16            377 
[1] "SNAPC1 MUTATION ANALYSIS"
[1] 3
  SNAPC1 MUTATED SNAPC1 WILD-TYPE 
               8              385 
  SNAPC1 MUTATED SNAPC1 WILD-TYPE 
               8              385 
[1] "ALG10 MUTATION ANALYSIS"
[1] 3
  ALG10 MUTATED ALG10 WILD-TYPE 
             14             379 
  ALG10 MUTATED ALG10 WILD-TYPE 
             14             379 
[1] "HDLBP MUTATION ANALYSIS"
[1] 3
  HDLBP MUTATED HDLBP WILD-TYPE 
             31             362 
  HDLBP MUTATED HDLBP WILD-TYPE 
             31             362 
[1] "GRINA MUTATION ANALYSIS"
[1] 3
  GRINA MUTATED GRINA WILD-TYPE 
              9             384 
  GRINA MUTATED GRINA WILD-TYPE 
              9             384 
[1] "RAB42 MUTATION ANALYSIS"
[1] 3
  RAB42 MUTATED RAB42 WILD-TYPE 
              5             388 
  RAB42 MUTATED RAB42 WILD-TYPE 
              5             388 
[1] "SAMD9L MUTATION ANALYSIS"
[1] 3
  SAMD9L MUTATED SAMD9L WILD-TYPE 
              22              371 
  SAMD9L MUTATED SAMD9L WILD-TYPE 
              22              371 
[1] "GLT6D1 MUTATION ANALYSIS"
[1] 3
  GLT6D1 MUTATED GLT6D1 WILD-TYPE 
              14              379 
  GLT6D1 MUTATED GLT6D1 WILD-TYPE 
              14              379 
[1] "SLC22A6 MUTATION ANALYSIS"
[1] 3
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
               14               379 
  SLC22A6 MUTATED SLC22A6 WILD-TYPE 
               14               379 
[1] "SVIL MUTATION ANALYSIS"
[1] 3
  SVIL MUTATED SVIL WILD-TYPE 
            30            363 
  SVIL MUTATED SVIL WILD-TYPE 
            30            363 
[1] "CCDC148 MUTATION ANALYSIS"
[1] 3
  CCDC148 MUTATED CCDC148 WILD-TYPE 
                8               385 
  CCDC148 MUTATED CCDC148 WILD-TYPE 
                8               385 
[1] "MOBKL1A MUTATION ANALYSIS"
[1] 3
  MOBKL1A MUTATED MOBKL1A WILD-TYPE 
                6               387 
  MOBKL1A MUTATED MOBKL1A WILD-TYPE 
                6               387 
[1] "SETDB2 MUTATION ANALYSIS"
[1] 3
  SETDB2 MUTATED SETDB2 WILD-TYPE 
              12              381 
  SETDB2 MUTATED SETDB2 WILD-TYPE 
              12              381 
[1] "ZNF43 MUTATION ANALYSIS"
[1] 3
  ZNF43 MUTATED ZNF43 WILD-TYPE 
             25             368 
  ZNF43 MUTATED ZNF43 WILD-TYPE 
             25             368 
[1] "NOX5 MUTATION ANALYSIS"
[1] 3
  NOX5 MUTATED NOX5 WILD-TYPE 
            17            376 
  NOX5 MUTATED NOX5 WILD-TYPE 
            17            376 
[1] "ANKRD34A MUTATION ANALYSIS"
[1] 3
  ANKRD34A MUTATED ANKRD34A WILD-TYPE 
                11                382 
  ANKRD34A MUTATED ANKRD34A WILD-TYPE 
                11                382 
[1] "PHACTR4 MUTATION ANALYSIS"
[1] 3
  PHACTR4 MUTATED PHACTR4 WILD-TYPE 
               10               383 
  PHACTR4 MUTATED PHACTR4 WILD-TYPE 
               10               383 
[1] "RAD50 MUTATION ANALYSIS"
[1] 3
  RAD50 MUTATED RAD50 WILD-TYPE 
             12             381 
  RAD50 MUTATED RAD50 WILD-TYPE 
             12             381 
[1] "JAK1 MUTATION ANALYSIS"
[1] 3
  JAK1 MUTATED JAK1 WILD-TYPE 
            17            376 
  JAK1 MUTATED JAK1 WILD-TYPE 
            17            376 
[1] "FAM155B MUTATION ANALYSIS"
[1] 3
  FAM155B MUTATED FAM155B WILD-TYPE 
               13               380 
  FAM155B MUTATED FAM155B WILD-TYPE 
               13               380 
[1] "DIDO1 MUTATION ANALYSIS"
[1] 3
  DIDO1 MUTATED DIDO1 WILD-TYPE 
             38             355 
  DIDO1 MUTATED DIDO1 WILD-TYPE 
             38             355 
[1] "CASP8 MUTATION ANALYSIS"
[1] 3
  CASP8 MUTATED CASP8 WILD-TYPE 
             18             375 
  CASP8 MUTATED CASP8 WILD-TYPE 
             18             375 
[1] "NWD1 MUTATION ANALYSIS"
[1] 3
  NWD1 MUTATED NWD1 WILD-TYPE 
            32            361 
  NWD1 MUTATED NWD1 WILD-TYPE 
            32            361 
[1] "RBM6 MUTATION ANALYSIS"
[1] 3
  RBM6 MUTATED RBM6 WILD-TYPE 
            23            370 
  RBM6 MUTATED RBM6 WILD-TYPE 
            23            370 
[1] "PBRM1 MUTATION ANALYSIS"
[1] 3
  PBRM1 MUTATED PBRM1 WILD-TYPE 
             26             367 
  PBRM1 MUTATED PBRM1 WILD-TYPE 
             26             367 
[1] "TOP2A MUTATION ANALYSIS"
[1] 3
  TOP2A MUTATED TOP2A WILD-TYPE 
             14             379 
  TOP2A MUTATED TOP2A WILD-TYPE 
             14             379 
[1] "KIF21A MUTATION ANALYSIS"
[1] 3
  KIF21A MUTATED KIF21A WILD-TYPE 
              18              375 
  KIF21A MUTATED KIF21A WILD-TYPE 
              18              375 
[1] "LTBP3 MUTATION ANALYSIS"
[1] 3
  LTBP3 MUTATED LTBP3 WILD-TYPE 
             17             376 
  LTBP3 MUTATED LTBP3 WILD-TYPE 
             17             376 
[1] "ZC3H4 MUTATION ANALYSIS"
[1] 3
  ZC3H4 MUTATED ZC3H4 WILD-TYPE 
             20             373 
  ZC3H4 MUTATED ZC3H4 WILD-TYPE 
             20             373 
[1] "TATDN1 MUTATION ANALYSIS"
[1] 3
  TATDN1 MUTATED TATDN1 WILD-TYPE 
               6              387 
  TATDN1 MUTATED TATDN1 WILD-TYPE 
               6              387 
[1] "PPIP5K2 MUTATION ANALYSIS"
[1] 3
  PPIP5K2 MUTATED PPIP5K2 WILD-TYPE 
               14               379 
  PPIP5K2 MUTATED PPIP5K2 WILD-TYPE 
               14               379 
[1] "C5ORF42 MUTATION ANALYSIS"
[1] 3
  C5ORF42 MUTATED C5ORF42 WILD-TYPE 
               31               362 
  C5ORF42 MUTATED C5ORF42 WILD-TYPE 
               31               362 
[1] "C13ORF33 MUTATION ANALYSIS"
[1] 3
  C13ORF33 MUTATED C13ORF33 WILD-TYPE 
                 7                386 
  C13ORF33 MUTATED C13ORF33 WILD-TYPE 
                 7                386 
[1] "COIL MUTATION ANALYSIS"
[1] 3
  COIL MUTATED COIL WILD-TYPE 
            10            383 
  COIL MUTATED COIL WILD-TYPE 
            10            383 
[1] "TP53BP2 MUTATION ANALYSIS"
[1] 3
  TP53BP2 MUTATED TP53BP2 WILD-TYPE 
               14               379 
  TP53BP2 MUTATED TP53BP2 WILD-TYPE 
               14               379 
[1] "TGFBR2 MUTATION ANALYSIS"
[1] 3
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
              16              377 
  TGFBR2 MUTATED TGFBR2 WILD-TYPE 
              16              377 
[1] "FBXO21 MUTATION ANALYSIS"
[1] 3
  FBXO21 MUTATED FBXO21 WILD-TYPE 
              15              378 
  FBXO21 MUTATED FBXO21 WILD-TYPE 
              15              378 
[1] "CASP7 MUTATION ANALYSIS"
[1] 3
  CASP7 MUTATED CASP7 WILD-TYPE 
              4             389 
  CASP7 MUTATED CASP7 WILD-TYPE 
              4             389 
[1] "TMEM41B MUTATION ANALYSIS"
[1] 3
  TMEM41B MUTATED TMEM41B WILD-TYPE 
                5               388 
  TMEM41B MUTATED TMEM41B WILD-TYPE 
                5               388 
[1] "ORC3L MUTATION ANALYSIS"
[1] 3
  ORC3L MUTATED ORC3L WILD-TYPE 
             12             381 
  ORC3L MUTATED ORC3L WILD-TYPE 
             12             381 
[1] "CBWD6 MUTATION ANALYSIS"
[1] 3
  CBWD6 MUTATED CBWD6 WILD-TYPE 
              7             386 
  CBWD6 MUTATED CBWD6 WILD-TYPE 
              7             386 
[1] "PRKAB1 MUTATION ANALYSIS"
[1] 3
  PRKAB1 MUTATED PRKAB1 WILD-TYPE 
              10              383 
  PRKAB1 MUTATED PRKAB1 WILD-TYPE 
              10              383 
[1] "RABGAP1 MUTATION ANALYSIS"
[1] 3
  RABGAP1 MUTATED RABGAP1 WILD-TYPE 
               22               371 
  RABGAP1 MUTATED RABGAP1 WILD-TYPE 
               22               371 
[1] "SRCIN1 MUTATION ANALYSIS"
[1] 3
  SRCIN1 MUTATED SRCIN1 WILD-TYPE 
              14              379 
  SRCIN1 MUTATED SRCIN1 WILD-TYPE 
              14              379 
[1] "NIN MUTATION ANALYSIS"
[1] 3
  NIN MUTATED NIN WILD-TYPE 
           23           370 
  NIN MUTATED NIN WILD-TYPE 
           23           370 
[1] "PET112L MUTATION ANALYSIS"
[1] 3
  PET112L MUTATED PET112L WILD-TYPE 
                8               385 
  PET112L MUTATED PET112L WILD-TYPE 
                8               385 
[1] "ZKSCAN5 MUTATION ANALYSIS"
[1] 3
  ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE 
               11               382 
  ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE 
               11               382 
[1] "CTSC MUTATION ANALYSIS"
[1] 3
  CTSC MUTATED CTSC WILD-TYPE 
            11            382 
  CTSC MUTATED CTSC WILD-TYPE 
            11            382 
[1] "AQP8 MUTATION ANALYSIS"
[1] 3
  AQP8 MUTATED AQP8 WILD-TYPE 
            13            380 
  AQP8 MUTATED AQP8 WILD-TYPE 
            13            380 
[1] "KANK4 MUTATION ANALYSIS"
[1] 3
  KANK4 MUTATED KANK4 WILD-TYPE 
             15             378 
  KANK4 MUTATED KANK4 WILD-TYPE 
             15             378 
[1] "ACVR1B MUTATION ANALYSIS"
[1] 3
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              13              380 
  ACVR1B MUTATED ACVR1B WILD-TYPE 
              13              380 
[1] "STAT6 MUTATION ANALYSIS"
[1] 3
  STAT6 MUTATED STAT6 WILD-TYPE 
              6             387 
  STAT6 MUTATED STAT6 WILD-TYPE 
              6             387 
[1] "PUS7L MUTATION ANALYSIS"
[1] 3
  PUS7L MUTATED PUS7L WILD-TYPE 
              9             384 
  PUS7L MUTATED PUS7L WILD-TYPE 
              9             384 
[1] "ARID2 MUTATION ANALYSIS"
[1] 3
  ARID2 MUTATED ARID2 WILD-TYPE 
             29             364 
  ARID2 MUTATED ARID2 WILD-TYPE 
             29             364 
[1] "ZMYM3 MUTATION ANALYSIS"
[1] 3
  ZMYM3 MUTATED ZMYM3 WILD-TYPE 
             15             378 
  ZMYM3 MUTATED ZMYM3 WILD-TYPE 
             15             378 
[1] "EOMES MUTATION ANALYSIS"
[1] 3
  EOMES MUTATED EOMES WILD-TYPE 
              9             384 
  EOMES MUTATED EOMES WILD-TYPE 
              9             384 
[1] "BPTF MUTATION ANALYSIS"
[1] 3
  BPTF MUTATED BPTF WILD-TYPE 
            30            363 
  BPTF MUTATED BPTF WILD-TYPE 
            30            363 
[1] "MTIF2 MUTATION ANALYSIS"
[1] 3
  MTIF2 MUTATED MTIF2 WILD-TYPE 
             18             375 
  MTIF2 MUTATED MTIF2 WILD-TYPE 
             18             375 
[1] "ARHGAP18 MUTATION ANALYSIS"
[1] 3
  ARHGAP18 MUTATED ARHGAP18 WILD-TYPE 
                 9                384 
  ARHGAP18 MUTATED ARHGAP18 WILD-TYPE 
                 9                384 
[1] "EFNB3 MUTATION ANALYSIS"
[1] 3
  EFNB3 MUTATED EFNB3 WILD-TYPE 
             13             380 
  EFNB3 MUTATED EFNB3 WILD-TYPE 
             13             380 
[1] "NDST2 MUTATION ANALYSIS"
[1] 3
  NDST2 MUTATED NDST2 WILD-TYPE 
             11             382 
  NDST2 MUTATED NDST2 WILD-TYPE 
             11             382 
[1] "MICALCL MUTATION ANALYSIS"
[1] 3
  MICALCL MUTATED MICALCL WILD-TYPE 
               15               378 
  MICALCL MUTATED MICALCL WILD-TYPE 
               15               378 
[1] "MMP3 MUTATION ANALYSIS"
[1] 3
  MMP3 MUTATED MMP3 WILD-TYPE 
            12            381 
  MMP3 MUTATED MMP3 WILD-TYPE 
            12            381 
[1] "OPTN MUTATION ANALYSIS"
[1] 3
  OPTN MUTATED OPTN WILD-TYPE 
            12            381 
  OPTN MUTATED OPTN WILD-TYPE 
            12            381 
[1] "ZFHX3 MUTATION ANALYSIS"
[1] 3
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
             38             355 
  ZFHX3 MUTATED ZFHX3 WILD-TYPE 
             38             355 
[1] "ACP1 MUTATION ANALYSIS"
[1] 3
  ACP1 MUTATED ACP1 WILD-TYPE 
             9            384 
  ACP1 MUTATED ACP1 WILD-TYPE 
             9            384 
[1] "YY1 MUTATION ANALYSIS"
[1] 3
  YY1 MUTATED YY1 WILD-TYPE 
            8           385 
  YY1 MUTATED YY1 WILD-TYPE 
            8           385 
[1] "CUL2 MUTATION ANALYSIS"
[1] 3
  CUL2 MUTATED CUL2 WILD-TYPE 
             9            384 
  CUL2 MUTATED CUL2 WILD-TYPE 
             9            384 
[1] "DAO MUTATION ANALYSIS"
[1] 3
  DAO MUTATED DAO WILD-TYPE 
           14           379 
  DAO MUTATED DAO WILD-TYPE 
           14           379 
[1] "TRUB1 MUTATION ANALYSIS"
[1] 3
  TRUB1 MUTATED TRUB1 WILD-TYPE 
             11             382 
  TRUB1 MUTATED TRUB1 WILD-TYPE 
             11             382 
[1] "PKN2 MUTATION ANALYSIS"
[1] 3
  PKN2 MUTATED PKN2 WILD-TYPE 
            16            377 
  PKN2 MUTATED PKN2 WILD-TYPE 
            16            377 
[1] "KLHDC5 MUTATION ANALYSIS"
[1] 3
  KLHDC5 MUTATED KLHDC5 WILD-TYPE 
              10              383 
  KLHDC5 MUTATED KLHDC5 WILD-TYPE 
              10              383 
[1] "TFE3 MUTATION ANALYSIS"
[1] 3
  TFE3 MUTATED TFE3 WILD-TYPE 
             9            384 
  TFE3 MUTATED TFE3 WILD-TYPE 
             9            384 
[1] "GCC2 MUTATION ANALYSIS"
[1] 3
  GCC2 MUTATED GCC2 WILD-TYPE 
            14            379 
  GCC2 MUTATED GCC2 WILD-TYPE 
            14            379 
[1] "ARAF MUTATION ANALYSIS"
[1] 3
  ARAF MUTATED ARAF WILD-TYPE 
            12            381 
  ARAF MUTATED ARAF WILD-TYPE 
            12            381 
[1] "CDKN2A MUTATION ANALYSIS"
[1] 3
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              16              377 
  CDKN2A MUTATED CDKN2A WILD-TYPE 
              16              377 
[1] "MDM2 MUTATION ANALYSIS"
[1] 3
  MDM2 MUTATED MDM2 WILD-TYPE 
             7            386 
  MDM2 MUTATED MDM2 WILD-TYPE 
             7            386 
[1] "C4ORF6 MUTATION ANALYSIS"
[1] 3
  C4ORF6 MUTATED C4ORF6 WILD-TYPE 
              12              381 
  C4ORF6 MUTATED C4ORF6 WILD-TYPE 
              12              381 
[1] "CASC3 MUTATION ANALYSIS"
[1] 3
  CASC3 MUTATED CASC3 WILD-TYPE 
             11             382 
  CASC3 MUTATED CASC3 WILD-TYPE 
             11             382 
[1] "CCDC153 MUTATION ANALYSIS"
[1] 3
  CCDC153 MUTATED CCDC153 WILD-TYPE 
                7               386 
  CCDC153 MUTATED CCDC153 WILD-TYPE 
                7               386 
[1] "SF3B3 MUTATION ANALYSIS"
[1] 3
  SF3B3 MUTATED SF3B3 WILD-TYPE 
             20             373 
  SF3B3 MUTATED SF3B3 WILD-TYPE 
             20             373 
[1] "MLL3 MUTATION ANALYSIS"
[1] 3
  MLL3 MUTATED MLL3 WILD-TYPE 
            52            341 
  MLL3 MUTATED MLL3 WILD-TYPE 
            52            341 
[1] "CA2 MUTATION ANALYSIS"
[1] 3
  CA2 MUTATED CA2 WILD-TYPE 
            7           386 
  CA2 MUTATED CA2 WILD-TYPE 
            7           386 
[1] "CNBD1 MUTATION ANALYSIS"
[1] 3
  CNBD1 MUTATED CNBD1 WILD-TYPE 
             18             375 
  CNBD1 MUTATED CNBD1 WILD-TYPE 
             18             375 
[1] "DNAH7 MUTATION ANALYSIS"
[1] 3
  DNAH7 MUTATED DNAH7 WILD-TYPE 
             52             341 
  DNAH7 MUTATED DNAH7 WILD-TYPE 
             52             341 
[1] "ASB11 MUTATION ANALYSIS"
[1] 3
  ASB11 MUTATED ASB11 WILD-TYPE 
             10             383 
  ASB11 MUTATED ASB11 WILD-TYPE 
             10             383 
[1] "CDC14A MUTATION ANALYSIS"
[1] 3
  CDC14A MUTATED CDC14A WILD-TYPE 
              15              378 
  CDC14A MUTATED CDC14A WILD-TYPE 
              15              378 
[1] "NHLRC1 MUTATION ANALYSIS"
[1] 3
  NHLRC1 MUTATED NHLRC1 WILD-TYPE 
              12              381 
  NHLRC1 MUTATED NHLRC1 WILD-TYPE 
              12              381 
[1] "ZC3H18 MUTATION ANALYSIS"
[1] 3
  ZC3H18 MUTATED ZC3H18 WILD-TYPE 
              20              373 
  ZC3H18 MUTATED ZC3H18 WILD-TYPE 
              20              373 
[1] "RGS9BP MUTATION ANALYSIS"
[1] 3
  RGS9BP MUTATED RGS9BP WILD-TYPE 
               8              385 
  RGS9BP MUTATED RGS9BP WILD-TYPE 
               8              385 
[1] "GLYR1 MUTATION ANALYSIS"
[1] 3
  GLYR1 MUTATED GLYR1 WILD-TYPE 
             15             378 
  GLYR1 MUTATED GLYR1 WILD-TYPE 
             15             378 
[1] "FILIP1L MUTATION ANALYSIS"
[1] 3
  FILIP1L MUTATED FILIP1L WILD-TYPE 
               21               372 
  FILIP1L MUTATED FILIP1L WILD-TYPE 
               21               372 
[1] "USP26 MUTATION ANALYSIS"
[1] 3
  USP26 MUTATED USP26 WILD-TYPE 
             22             371 
  USP26 MUTATED USP26 WILD-TYPE 
             22             371 
[1] "VPS13B MUTATION ANALYSIS"
[1] 3
  VPS13B MUTATED VPS13B WILD-TYPE 
              49              344 
  VPS13B MUTATED VPS13B WILD-TYPE 
              49              344 
[1] "RCOR3 MUTATION ANALYSIS"
[1] 3
  RCOR3 MUTATED RCOR3 WILD-TYPE 
             14             379 
  RCOR3 MUTATED RCOR3 WILD-TYPE 
             14             379 
[1] "CASD1 MUTATION ANALYSIS"
[1] 3
  CASD1 MUTATED CASD1 WILD-TYPE 
             12             381 
  CASD1 MUTATED CASD1 WILD-TYPE 
             12             381 
[1] "CDC25C MUTATION ANALYSIS"
[1] 3
  CDC25C MUTATED CDC25C WILD-TYPE 
              11              382 
  CDC25C MUTATED CDC25C WILD-TYPE 
              11              382 
[1] "BCL9L MUTATION ANALYSIS"
[1] 3
  BCL9L MUTATED BCL9L WILD-TYPE 
             26             367 
  BCL9L MUTATED BCL9L WILD-TYPE 
             26             367 
[1] "TNFSF10 MUTATION ANALYSIS"
[1] 3
  TNFSF10 MUTATED TNFSF10 WILD-TYPE 
                8               385 
  TNFSF10 MUTATED TNFSF10 WILD-TYPE 
                8               385 
[1] "PIK3R3 MUTATION ANALYSIS"
[1] 3
  PIK3R3 MUTATED PIK3R3 WILD-TYPE 
               8              385 
  PIK3R3 MUTATED PIK3R3 WILD-TYPE 
               8              385 
[1] "ZNF124 MUTATION ANALYSIS"
[1] 3
  ZNF124 MUTATED ZNF124 WILD-TYPE 
              10              383 
  ZNF124 MUTATED ZNF124 WILD-TYPE 
              10              383 
[1] "KNTC1 MUTATION ANALYSIS"
[1] 3
  KNTC1 MUTATED KNTC1 WILD-TYPE 
             20             373 
  KNTC1 MUTATED KNTC1 WILD-TYPE 
             20             373 
[1] "GAS6 MUTATION ANALYSIS"
[1] 3
  GAS6 MUTATED GAS6 WILD-TYPE 
            16            377 
  GAS6 MUTATED GAS6 WILD-TYPE 
            16            377 
[1] "HCFC1R1 MUTATION ANALYSIS"
[1] 3
  HCFC1R1 MUTATED HCFC1R1 WILD-TYPE 
                6               387 
  HCFC1R1 MUTATED HCFC1R1 WILD-TYPE 
                6               387 
[1] "NCAPD3 MUTATION ANALYSIS"
[1] 3
  NCAPD3 MUTATED NCAPD3 WILD-TYPE 
              19              374 
  NCAPD3 MUTATED NCAPD3 WILD-TYPE 
              19              374 
[1] "TAF1L MUTATION ANALYSIS"
[1] 3
  TAF1L MUTATED TAF1L WILD-TYPE 
             31             362 
  TAF1L MUTATED TAF1L WILD-TYPE 
             31             362 
[1] "LRRN2 MUTATION ANALYSIS"
[1] 3
  LRRN2 MUTATED LRRN2 WILD-TYPE 
             34             359 
  LRRN2 MUTATED LRRN2 WILD-TYPE 
             34             359 
[1] "C17ORF57 MUTATION ANALYSIS"
[1] 3
  C17ORF57 MUTATED C17ORF57 WILD-TYPE 
                12                381 
  C17ORF57 MUTATED C17ORF57 WILD-TYPE 
                12                381 
[1] "BEND3 MUTATION ANALYSIS"
[1] 3
  BEND3 MUTATED BEND3 WILD-TYPE 
             12             381 
  BEND3 MUTATED BEND3 WILD-TYPE 
             12             381 
[1] "FAM98C MUTATION ANALYSIS"
[1] 3
  FAM98C MUTATED FAM98C WILD-TYPE 
               8              385 
  FAM98C MUTATED FAM98C WILD-TYPE 
               8              385 
[1] "KIAA0100 MUTATION ANALYSIS"
[1] 3
  KIAA0100 MUTATED KIAA0100 WILD-TYPE 
                26                367 
  KIAA0100 MUTATED KIAA0100 WILD-TYPE 
                26                367 
[1] "MYLK3 MUTATION ANALYSIS"
[1] 3
  MYLK3 MUTATED MYLK3 WILD-TYPE 
              9             384 
  MYLK3 MUTATED MYLK3 WILD-TYPE 
              9             384 
[1] "PLOD3 MUTATION ANALYSIS"
[1] 3
  PLOD3 MUTATED PLOD3 WILD-TYPE 
             16             377 
  PLOD3 MUTATED PLOD3 WILD-TYPE 
             16             377 
[1] "RAD51AP2 MUTATION ANALYSIS"
[1] 3
  RAD51AP2 MUTATED RAD51AP2 WILD-TYPE 
                16                377 
  RAD51AP2 MUTATED RAD51AP2 WILD-TYPE 
                16                377 
[1] "U2AF2 MUTATION ANALYSIS"
[1] 3
  U2AF2 MUTATED U2AF2 WILD-TYPE 
             14             379 
  U2AF2 MUTATED U2AF2 WILD-TYPE 
             14             379 
[1] "MFN1 MUTATION ANALYSIS"
[1] 3
  MFN1 MUTATED MFN1 WILD-TYPE 
             9            384 
  MFN1 MUTATED MFN1 WILD-TYPE 
             9            384 
[1] "ATP6V1C2 MUTATION ANALYSIS"
[1] 3
  ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE 
                15                378 
  ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE 
                15                378 
[1] "NFE2L1 MUTATION ANALYSIS"
[1] 3
  NFE2L1 MUTATED NFE2L1 WILD-TYPE 
              11              382 
  NFE2L1 MUTATED NFE2L1 WILD-TYPE 
              11              382 
[1] "ERF MUTATION ANALYSIS"
[1] 3
  ERF MUTATED ERF WILD-TYPE 
           16           377 
  ERF MUTATED ERF WILD-TYPE 
           16           377 
[1] "TAS2R10 MUTATION ANALYSIS"
[1] 3
  TAS2R10 MUTATED TAS2R10 WILD-TYPE 
                4               389 
  TAS2R10 MUTATED TAS2R10 WILD-TYPE 
                4               389 
[1] "FAM82A1 MUTATION ANALYSIS"
[1] 3
  FAM82A1 MUTATED FAM82A1 WILD-TYPE 
                5               388 
  FAM82A1 MUTATED FAM82A1 WILD-TYPE 
                5               388 
[1] "DYRK4 MUTATION ANALYSIS"
[1] 3
  DYRK4 MUTATED DYRK4 WILD-TYPE 
              8             385 
  DYRK4 MUTATED DYRK4 WILD-TYPE 
              8             385 
[1] "BTNL3 MUTATION ANALYSIS"
[1] 3
  BTNL3 MUTATED BTNL3 WILD-TYPE 
              6             387 
  BTNL3 MUTATED BTNL3 WILD-TYPE 
              6             387 
[1] "ADNP MUTATION ANALYSIS"
[1] 3
  ADNP MUTATED ADNP WILD-TYPE 
            18            375 
  ADNP MUTATED ADNP WILD-TYPE 
            18            375 
[1] "ELF3 MUTATION ANALYSIS"
[1] 3
  ELF3 MUTATED ELF3 WILD-TYPE 
            13            380 
  ELF3 MUTATED ELF3 WILD-TYPE 
            13            380 
[1] "NID2 MUTATION ANALYSIS"
[1] 3
  NID2 MUTATED NID2 WILD-TYPE 
            19            374 
  NID2 MUTATED NID2 WILD-TYPE 
            19            374 
[1] "FBN3 MUTATION ANALYSIS"
[1] 3
  FBN3 MUTATED FBN3 WILD-TYPE 
            33            360 
  FBN3 MUTATED FBN3 WILD-TYPE 
            33            360 
[1] "ABCA6 MUTATION ANALYSIS"
[1] 3
  ABCA6 MUTATED ABCA6 WILD-TYPE 
             15             378 
  ABCA6 MUTATED ABCA6 WILD-TYPE 
             15             378 
[1] "IDE MUTATION ANALYSIS"
[1] 3
  IDE MUTATED IDE WILD-TYPE 
           11           382 
  IDE MUTATED IDE WILD-TYPE 
           11           382 
[1] "BCLAF1 MUTATION ANALYSIS"
[1] 3
  BCLAF1 MUTATED BCLAF1 WILD-TYPE 
              30              363 
  BCLAF1 MUTATED BCLAF1 WILD-TYPE 
              30              363 
[1] "DLGAP3 MUTATION ANALYSIS"
[1] 3
  DLGAP3 MUTATED DLGAP3 WILD-TYPE 
              20              373 
  DLGAP3 MUTATED DLGAP3 WILD-TYPE 
              20              373 
[1] "ZC3H13 MUTATION ANALYSIS"
[1] 3
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              31              362 
  ZC3H13 MUTATED ZC3H13 WILD-TYPE 
              31              362 
[1] "RTN2 MUTATION ANALYSIS"
[1] 3
  RTN2 MUTATED RTN2 WILD-TYPE 
            15            378 
  RTN2 MUTATED RTN2 WILD-TYPE 
            15            378 
[1] "RAI1 MUTATION ANALYSIS"
[1] 3
  RAI1 MUTATED RAI1 WILD-TYPE 
            29            364 
  RAI1 MUTATED RAI1 WILD-TYPE 
            29            364 
[1] "C6ORF165 MUTATION ANALYSIS"
[1] 3
  C6ORF165 MUTATED C6ORF165 WILD-TYPE 
                16                377 
  C6ORF165 MUTATED C6ORF165 WILD-TYPE 
                16                377 
[1] "HIAT1 MUTATION ANALYSIS"
[1] 3
  HIAT1 MUTATED HIAT1 WILD-TYPE 
              9             384 
  HIAT1 MUTATED HIAT1 WILD-TYPE 
              9             384 
[1] "HSPG2 MUTATION ANALYSIS"
[1] 3
  HSPG2 MUTATED HSPG2 WILD-TYPE 
             62             331 
  HSPG2 MUTATED HSPG2 WILD-TYPE 
             62             331 
[1] "NBN MUTATION ANALYSIS"
[1] 3
  NBN MUTATED NBN WILD-TYPE 
           15           378 
  NBN MUTATED NBN WILD-TYPE 
           15           378 
[1] "ERBB3 MUTATION ANALYSIS"
[1] 3
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             35             358 
  ERBB3 MUTATED ERBB3 WILD-TYPE 
             35             358 
[1] "IPO5 MUTATION ANALYSIS"
[1] 3
  IPO5 MUTATED IPO5 WILD-TYPE 
            21            372 
  IPO5 MUTATED IPO5 WILD-TYPE 
            21            372 
[1] "MARVELD3 MUTATION ANALYSIS"
[1] 3
  MARVELD3 MUTATED MARVELD3 WILD-TYPE 
                12                381 
  MARVELD3 MUTATED MARVELD3 WILD-TYPE 
                12                381 
[1] "NOS3 MUTATION ANALYSIS"
[1] 3
  NOS3 MUTATED NOS3 WILD-TYPE 
            15            378 
  NOS3 MUTATED NOS3 WILD-TYPE 
            15            378 
[1] "TAS2R42 MUTATION ANALYSIS"
[1] 3
  TAS2R42 MUTATED TAS2R42 WILD-TYPE 
                6               387 
  TAS2R42 MUTATED TAS2R42 WILD-TYPE 
                6               387 
[1] "ANKRD20A4 MUTATION ANALYSIS"
[1] 3
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  7                 386 
  ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE 
                  7                 386 
[1] "UGP2 MUTATION ANALYSIS"
[1] 3
  UGP2 MUTATED UGP2 WILD-TYPE 
             9            384 
  UGP2 MUTATED UGP2 WILD-TYPE 
             9            384 
[1] "KLHDC8B MUTATION ANALYSIS"
[1] 3
  KLHDC8B MUTATED KLHDC8B WILD-TYPE 
               10               383 
  KLHDC8B MUTATED KLHDC8B WILD-TYPE 
               10               383 
[1] "ABCB6 MUTATION ANALYSIS"
[1] 3
  ABCB6 MUTATED ABCB6 WILD-TYPE 
             12             381 
  ABCB6 MUTATED ABCB6 WILD-TYPE 
             12             381 
[1] "TMC4 MUTATION ANALYSIS"
[1] 3
  TMC4 MUTATED TMC4 WILD-TYPE 
            15            378 
  TMC4 MUTATED TMC4 WILD-TYPE 
            15            378 
[1] "TM6SF1 MUTATION ANALYSIS"
[1] 3
  TM6SF1 MUTATED TM6SF1 WILD-TYPE 
               8              385 
  TM6SF1 MUTATED TM6SF1 WILD-TYPE 
               8              385 
[1] "ARID1B MUTATION ANALYSIS"
[1] 3
  ARID1B MUTATED ARID1B WILD-TYPE 
              26              367 
  ARID1B MUTATED ARID1B WILD-TYPE 
              26              367 
[1] "TNKS1BP1 MUTATION ANALYSIS"
[1] 3
  TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE 
                27                366 
  TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE 
                27                366 
[1] "ERBB2 MUTATION ANALYSIS"
[1] 3
  ERBB2 MUTATED ERBB2 WILD-TYPE 
             19             374 
  ERBB2 MUTATED ERBB2 WILD-TYPE 
             19             374 
[1] "FAM70B MUTATION ANALYSIS"
[1] 3
  FAM70B MUTATED FAM70B WILD-TYPE 
              13              380 
  FAM70B MUTATED FAM70B WILD-TYPE 
              13              380 
[1] "MYEOV MUTATION ANALYSIS"
[1] 3
  MYEOV MUTATED MYEOV WILD-TYPE 
              9             384 
  MYEOV MUTATED MYEOV WILD-TYPE 
              9             384 
[1] "IRS1 MUTATION ANALYSIS"
[1] 3
  IRS1 MUTATED IRS1 WILD-TYPE 
            21            372 
  IRS1 MUTATED IRS1 WILD-TYPE 
            21            372 
[1] "WDR5 MUTATION ANALYSIS"
[1] 3
  WDR5 MUTATED WDR5 WILD-TYPE 
             5            388 
  WDR5 MUTATED WDR5 WILD-TYPE 
             5            388 
[1] "RPL22 MUTATION ANALYSIS"
[1] 3
  RPL22 MUTATED RPL22 WILD-TYPE 
              9             384 
  RPL22 MUTATED RPL22 WILD-TYPE 
              9             384 
[1] "DDX26B MUTATION ANALYSIS"
[1] 3
  DDX26B MUTATED DDX26B WILD-TYPE 
              12              381 
  DDX26B MUTATED DDX26B WILD-TYPE 
              12              381 
[1] "EPHX1 MUTATION ANALYSIS"
[1] 3
  EPHX1 MUTATED EPHX1 WILD-TYPE 
             10             383 
  EPHX1 MUTATED EPHX1 WILD-TYPE 
             10             383 
[1] "CLMN MUTATION ANALYSIS"
[1] 3
  CLMN MUTATED CLMN WILD-TYPE 
            14            379 
  CLMN MUTATED CLMN WILD-TYPE 
            14            379 
[1] "TRAM1L1 MUTATION ANALYSIS"
[1] 3
  TRAM1L1 MUTATED TRAM1L1 WILD-TYPE 
               15               378 
  TRAM1L1 MUTATED TRAM1L1 WILD-TYPE 
               15               378 
[1] "EHMT2 MUTATION ANALYSIS"
[1] 3
  EHMT2 MUTATED EHMT2 WILD-TYPE 
             19             374 
  EHMT2 MUTATED EHMT2 WILD-TYPE 
             19             374 
[1] "GALNTL1 MUTATION ANALYSIS"
[1] 3
  GALNTL1 MUTATED GALNTL1 WILD-TYPE 
               10               383 
  GALNTL1 MUTATED GALNTL1 WILD-TYPE 
               10               383 
[1] "DMXL2 MUTATION ANALYSIS"
[1] 3
  DMXL2 MUTATED DMXL2 WILD-TYPE 
             41             352 
  DMXL2 MUTATED DMXL2 WILD-TYPE 
             41             352 
[1] "MIA2 MUTATION ANALYSIS"
[1] 3
  MIA2 MUTATED MIA2 WILD-TYPE 
            10            383 
  MIA2 MUTATED MIA2 WILD-TYPE 
            10            383 
[1] "NT5DC1 MUTATION ANALYSIS"
[1] 3
  NT5DC1 MUTATED NT5DC1 WILD-TYPE 
               8              385 
  NT5DC1 MUTATED NT5DC1 WILD-TYPE 
               8              385 
[1] "SYCP1 MUTATION ANALYSIS"
[1] 3
  SYCP1 MUTATED SYCP1 WILD-TYPE 
             23             370 
  SYCP1 MUTATED SYCP1 WILD-TYPE 
             23             370 
[1] "ZNF878 MUTATION ANALYSIS"
[1] 3
  ZNF878 MUTATED ZNF878 WILD-TYPE 
              13              380 
  ZNF878 MUTATED ZNF878 WILD-TYPE 
              13              380 
[1] "KIAA1009 MUTATION ANALYSIS"
[1] 3
  KIAA1009 MUTATED KIAA1009 WILD-TYPE 
                16                377 
  KIAA1009 MUTATED KIAA1009 WILD-TYPE 
                16                377 
[1] "SENP3 MUTATION ANALYSIS"
[1] 3
  SENP3 MUTATED SENP3 WILD-TYPE 
             13             380 
  SENP3 MUTATED SENP3 WILD-TYPE 
             13             380 
[1] "ERBB4 MUTATION ANALYSIS"
[1] 3
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             49             344 
  ERBB4 MUTATED ERBB4 WILD-TYPE 
             49             344 
[1] "COL12A1 MUTATION ANALYSIS"
[1] 3
  COL12A1 MUTATED COL12A1 WILD-TYPE 
               53               340 
  COL12A1 MUTATED COL12A1 WILD-TYPE 
               53               340 
[1] "PANK1 MUTATION ANALYSIS"
[1] 3
  PANK1 MUTATED PANK1 WILD-TYPE 
             10             383 
  PANK1 MUTATED PANK1 WILD-TYPE 
             10             383 
[1] "SNRNP35 MUTATION ANALYSIS"
[1] 3
  SNRNP35 MUTATED SNRNP35 WILD-TYPE 
                6               387 
  SNRNP35 MUTATED SNRNP35 WILD-TYPE 
                6               387 
[1] "PTPN4 MUTATION ANALYSIS"
[1] 3
  PTPN4 MUTATED PTPN4 WILD-TYPE 
             12             381 
  PTPN4 MUTATED PTPN4 WILD-TYPE 
             12             381 
[1] "TNFRSF9 MUTATION ANALYSIS"
[1] 3
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
               10               383 
  TNFRSF9 MUTATED TNFRSF9 WILD-TYPE 
               10               383 
[1] "SIGLEC10 MUTATION ANALYSIS"
[1] 3
  SIGLEC10 MUTATED SIGLEC10 WILD-TYPE 
                13                380 
  SIGLEC10 MUTATED SIGLEC10 WILD-TYPE 
                13                380 
[1] "HTR7 MUTATION ANALYSIS"
[1] 3
  HTR7 MUTATED HTR7 WILD-TYPE 
            14            379 
  HTR7 MUTATED HTR7 WILD-TYPE 
            14            379 
[1] "OBSCN MUTATION ANALYSIS"
[1] 3
  OBSCN MUTATED OBSCN WILD-TYPE 
             90             303 
  OBSCN MUTATED OBSCN WILD-TYPE 
             90             303 
[1] "GAB2 MUTATION ANALYSIS"
[1] 3
  GAB2 MUTATED GAB2 WILD-TYPE 
            11            382 
  GAB2 MUTATED GAB2 WILD-TYPE 
            11            382 
[1] "SLC12A7 MUTATION ANALYSIS"
[1] 3
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
               24               369 
  SLC12A7 MUTATED SLC12A7 WILD-TYPE 
               24               369 
[1] "KIAA1522 MUTATION ANALYSIS"
[1] 3
  KIAA1522 MUTATED KIAA1522 WILD-TYPE 
                12                381 
  KIAA1522 MUTATED KIAA1522 WILD-TYPE 
                12                381 
[1] "FERMT2 MUTATION ANALYSIS"
[1] 3
  FERMT2 MUTATED FERMT2 WILD-TYPE 
              12              381 
  FERMT2 MUTATED FERMT2 WILD-TYPE 
              12              381 
[1] "PPP1R13B MUTATION ANALYSIS"
[1] 3
  PPP1R13B MUTATED PPP1R13B WILD-TYPE 
                14                379 
  PPP1R13B MUTATED PPP1R13B WILD-TYPE 
                14                379 
[1] "KIAA0240 MUTATION ANALYSIS"
[1] 3
  KIAA0240 MUTATED KIAA0240 WILD-TYPE 
                13                380 
  KIAA0240 MUTATED KIAA0240 WILD-TYPE 
                13                380 
[1] "TP53BP1 MUTATION ANALYSIS"
[1] 3
  TP53BP1 MUTATED TP53BP1 WILD-TYPE 
               22               371 
  TP53BP1 MUTATED TP53BP1 WILD-TYPE 
               22               371 
[1] "CHPF2 MUTATION ANALYSIS"
[1] 3
  CHPF2 MUTATED CHPF2 WILD-TYPE 
             16             377 
  CHPF2 MUTATED CHPF2 WILD-TYPE 
             16             377 
[1] "GPR141 MUTATION ANALYSIS"
[1] 3
  GPR141 MUTATED GPR141 WILD-TYPE 
              11              382 
  GPR141 MUTATED GPR141 WILD-TYPE 
              11              382 
[1] "PPP1R15A MUTATION ANALYSIS"
[1] 3
  PPP1R15A MUTATED PPP1R15A WILD-TYPE 
                 5                388 
  PPP1R15A MUTATED PPP1R15A WILD-TYPE 
                 5                388 
[1] "KYNU MUTATION ANALYSIS"
[1] 3
  KYNU MUTATED KYNU WILD-TYPE 
            12            381 
  KYNU MUTATED KYNU WILD-TYPE 
            12            381 
[1] "RIF1 MUTATION ANALYSIS"
[1] 3
  RIF1 MUTATED RIF1 WILD-TYPE 
            24            369 
  RIF1 MUTATED RIF1 WILD-TYPE 
            24            369 
[1] "TBC1D10C MUTATION ANALYSIS"
[1] 3
  TBC1D10C MUTATED TBC1D10C WILD-TYPE 
                 9                384 
  TBC1D10C MUTATED TBC1D10C WILD-TYPE 
                 9                384 
[1] "UHRF1BP1 MUTATION ANALYSIS"
[1] 3
  UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE 
                19                374 
  UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE 
                19                374 
[1] "DLAT MUTATION ANALYSIS"
[1] 3
  DLAT MUTATED DLAT WILD-TYPE 
             8            385 
  DLAT MUTATED DLAT WILD-TYPE 
             8            385 
[1] "CD93 MUTATION ANALYSIS"
[1] 3
  CD93 MUTATED CD93 WILD-TYPE 
            18            375 
  CD93 MUTATED CD93 WILD-TYPE 
            18            375 
[1] "SGOL2 MUTATION ANALYSIS"
[1] 3
  SGOL2 MUTATED SGOL2 WILD-TYPE 
             13             380 
  SGOL2 MUTATED SGOL2 WILD-TYPE 
             13             380 
[1] "ADNP2 MUTATION ANALYSIS"
[1] 3
  ADNP2 MUTATED ADNP2 WILD-TYPE 
             19             374 
  ADNP2 MUTATED ADNP2 WILD-TYPE 
             19             374 
[1] "DPP7 MUTATION ANALYSIS"
[1] 3
  DPP7 MUTATED DPP7 WILD-TYPE 
             9            384 
  DPP7 MUTATED DPP7 WILD-TYPE 
             9            384 
[1] "CSGALNACT1 MUTATION ANALYSIS"
[1] 3
  CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE 
                  19                  374 
  CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE 
                  19                  374 
[1] "CNNM1 MUTATION ANALYSIS"
[1] 3
  CNNM1 MUTATED CNNM1 WILD-TYPE 
             12             381 
  CNNM1 MUTATED CNNM1 WILD-TYPE 
             12             381 
[1] "IFRD1 MUTATION ANALYSIS"
[1] 3
  IFRD1 MUTATED IFRD1 WILD-TYPE 
             10             383 
  IFRD1 MUTATED IFRD1 WILD-TYPE 
             10             383 
[1] "IGFBP1 MUTATION ANALYSIS"
[1] 3
  IGFBP1 MUTATED IGFBP1 WILD-TYPE 
              11              382 
  IGFBP1 MUTATED IGFBP1 WILD-TYPE 
              11              382 
[1] "SH3KBP1 MUTATION ANALYSIS"
[1] 3
  SH3KBP1 MUTATED SH3KBP1 WILD-TYPE 
               15               378 
  SH3KBP1 MUTATED SH3KBP1 WILD-TYPE 
               15               378 
[1] "HIST1H1A MUTATION ANALYSIS"
[1] 3
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
                 9                384 
  HIST1H1A MUTATED HIST1H1A WILD-TYPE 
                 9                384 
[1] "TUBE1 MUTATION ANALYSIS"
[1] 3
  TUBE1 MUTATED TUBE1 WILD-TYPE 
              9             384 
  TUBE1 MUTATED TUBE1 WILD-TYPE 
              9             384 
[1] "IPO11 MUTATION ANALYSIS"
[1] 3
  IPO11 MUTATED IPO11 WILD-TYPE 
             11             382 
  IPO11 MUTATED IPO11 WILD-TYPE 
             11             382 
[1] "IDH2 MUTATION ANALYSIS"
[1] 3
  IDH2 MUTATED IDH2 WILD-TYPE 
             4            389 
  IDH2 MUTATED IDH2 WILD-TYPE 
             4            389 
[1] "ZCCHC11 MUTATION ANALYSIS"
[1] 3
  ZCCHC11 MUTATED ZCCHC11 WILD-TYPE 
               18               375 
  ZCCHC11 MUTATED ZCCHC11 WILD-TYPE 
               18               375 
[1] "SYNCRIP MUTATION ANALYSIS"
[1] 3
  SYNCRIP MUTATED SYNCRIP WILD-TYPE 
               15               378 
  SYNCRIP MUTATED SYNCRIP WILD-TYPE 
               15               378 
[1] "BAT3 MUTATION ANALYSIS"
[1] 3
  BAT3 MUTATED BAT3 WILD-TYPE 
            13            380 
  BAT3 MUTATED BAT3 WILD-TYPE 
            13            380 
[1] "PRPF40B MUTATION ANALYSIS"
[1] 3
  PRPF40B MUTATED PRPF40B WILD-TYPE 
               17               376 
  PRPF40B MUTATED PRPF40B WILD-TYPE 
               17               376 
[1] "OXNAD1 MUTATION ANALYSIS"
[1] 3
  OXNAD1 MUTATED OXNAD1 WILD-TYPE 
               6              387 
  OXNAD1 MUTATED OXNAD1 WILD-TYPE 
               6              387 
[1] "YLPM1 MUTATION ANALYSIS"
[1] 3
  YLPM1 MUTATED YLPM1 WILD-TYPE 
             24             369 
  YLPM1 MUTATED YLPM1 WILD-TYPE 
             24             369 
[1] "PLEKHA5 MUTATION ANALYSIS"
[1] 3
  PLEKHA5 MUTATED PLEKHA5 WILD-TYPE 
               19               374 
  PLEKHA5 MUTATED PLEKHA5 WILD-TYPE 
               19               374 
[1] "TM7SF4 MUTATION ANALYSIS"
[1] 3
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
              19              374 
  TM7SF4 MUTATED TM7SF4 WILD-TYPE 
              19              374 
[1] "CTNNB1 MUTATION ANALYSIS"
[1] 3
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              24              369 
  CTNNB1 MUTATED CTNNB1 WILD-TYPE 
              24              369 
[1] "SNAPC2 MUTATION ANALYSIS"
[1] 3
  SNAPC2 MUTATED SNAPC2 WILD-TYPE 
               9              384 
  SNAPC2 MUTATED SNAPC2 WILD-TYPE 
               9              384 
[1] "MAP2K7 MUTATION ANALYSIS"
[1] 3
  MAP2K7 MUTATED MAP2K7 WILD-TYPE 
              27              366 
  MAP2K7 MUTATED MAP2K7 WILD-TYPE 
              27              366 
[1] "CETN3 MUTATION ANALYSIS"
[1] 3
  CETN3 MUTATED CETN3 WILD-TYPE 
              9             384 
  CETN3 MUTATED CETN3 WILD-TYPE 
              9             384 
[1] "CUBN MUTATION ANALYSIS"
[1] 3
  CUBN MUTATED CUBN WILD-TYPE 
            58            335 
  CUBN MUTATED CUBN WILD-TYPE 
            58            335 
[1] "TRMT6 MUTATION ANALYSIS"
[1] 3
  TRMT6 MUTATED TRMT6 WILD-TYPE 
              7             386 
  TRMT6 MUTATED TRMT6 WILD-TYPE 
              7             386 
[1] "ATM MUTATION ANALYSIS"
[1] 3
  ATM MUTATED ATM WILD-TYPE 
           38           355 
  ATM MUTATED ATM WILD-TYPE 
           38           355 
[1] "PMEPA1 MUTATION ANALYSIS"
[1] 3
  PMEPA1 MUTATED PMEPA1 WILD-TYPE 
               6              387 
  PMEPA1 MUTATED PMEPA1 WILD-TYPE 
               6              387 
[1] "POP1 MUTATION ANALYSIS"
[1] 3
  POP1 MUTATED POP1 WILD-TYPE 
            19            374 
  POP1 MUTATED POP1 WILD-TYPE 
            19            374 
[1] "EPHA2 MUTATION ANALYSIS"
[1] 3
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             27             366 
  EPHA2 MUTATED EPHA2 WILD-TYPE 
             27             366 
[1] "MPRIP MUTATION ANALYSIS"
[1] 3
  MPRIP MUTATED MPRIP WILD-TYPE 
             17             376 
  MPRIP MUTATED MPRIP WILD-TYPE 
             17             376 
[1] "LARP1B MUTATION ANALYSIS"
[1] 3
  LARP1B MUTATED LARP1B WILD-TYPE 
              12              381 
  LARP1B MUTATED LARP1B WILD-TYPE 
              12              381 
[1] "EIF5A2 MUTATION ANALYSIS"
[1] 3
  EIF5A2 MUTATED EIF5A2 WILD-TYPE 
               5              388 
  EIF5A2 MUTATED EIF5A2 WILD-TYPE 
               5              388 
[1] "RING1 MUTATION ANALYSIS"
[1] 3
  RING1 MUTATED RING1 WILD-TYPE 
              8             385 
  RING1 MUTATED RING1 WILD-TYPE 
              8             385 
[1] "FAM83E MUTATION ANALYSIS"
[1] 3
  FAM83E MUTATED FAM83E WILD-TYPE 
              13              380 
  FAM83E MUTATED FAM83E WILD-TYPE 
              13              380 
[1] "CLDN6 MUTATION ANALYSIS"
[1] 3
  CLDN6 MUTATED CLDN6 WILD-TYPE 
              9             384 
  CLDN6 MUTATED CLDN6 WILD-TYPE 
              9             384 
[1] "SULF1 MUTATION ANALYSIS"
[1] 3
  SULF1 MUTATED SULF1 WILD-TYPE 
             24             369 
  SULF1 MUTATED SULF1 WILD-TYPE 
             24             369 
[1] "PCGF3 MUTATION ANALYSIS"
[1] 3
  PCGF3 MUTATED PCGF3 WILD-TYPE 
              7             386 
  PCGF3 MUTATED PCGF3 WILD-TYPE 
              7             386 
[1] "SF3B2 MUTATION ANALYSIS"
[1] 3
  SF3B2 MUTATED SF3B2 WILD-TYPE 
             16             377 
  SF3B2 MUTATED SF3B2 WILD-TYPE 
             16             377 
[1] "C19ORF70 MUTATION ANALYSIS"
[1] 3
  C19ORF70 MUTATED C19ORF70 WILD-TYPE 
                 6                387 
  C19ORF70 MUTATED C19ORF70 WILD-TYPE 
                 6                387 
[1] "RNASEH2B MUTATION ANALYSIS"
[1] 3
  RNASEH2B MUTATED RNASEH2B WILD-TYPE 
                 4                389 
  RNASEH2B MUTATED RNASEH2B WILD-TYPE 
                 4                389 
[1] "GPR161 MUTATION ANALYSIS"
[1] 3
  GPR161 MUTATED GPR161 WILD-TYPE 
              12              381 
  GPR161 MUTATED GPR161 WILD-TYPE 
              12              381 
[1] "RRS1 MUTATION ANALYSIS"
[1] 3
  RRS1 MUTATED RRS1 WILD-TYPE 
             7            386 
  RRS1 MUTATED RRS1 WILD-TYPE 
             7            386 
[1] "ZCRB1 MUTATION ANALYSIS"
[1] 3
  ZCRB1 MUTATED ZCRB1 WILD-TYPE 
              6             387 
  ZCRB1 MUTATED ZCRB1 WILD-TYPE 
              6             387 
[1] "LINGO4 MUTATION ANALYSIS"
[1] 3
  LINGO4 MUTATED LINGO4 WILD-TYPE 
              11              382 
  LINGO4 MUTATED LINGO4 WILD-TYPE 
              11              382 
[1] "MAP9 MUTATION ANALYSIS"
[1] 3
  MAP9 MUTATED MAP9 WILD-TYPE 
            13            380 
  MAP9 MUTATED MAP9 WILD-TYPE 
            13            380 
[1] "CCDC27 MUTATION ANALYSIS"
[1] 3
  CCDC27 MUTATED CCDC27 WILD-TYPE 
               8              385 
  CCDC27 MUTATED CCDC27 WILD-TYPE 
               8              385 
[1] "DDX60 MUTATION ANALYSIS"
[1] 3
  DDX60 MUTATED DDX60 WILD-TYPE 
             15             378 
  DDX60 MUTATED DDX60 WILD-TYPE 
             15             378 
[1] "ACTL6A MUTATION ANALYSIS"
[1] 3
  ACTL6A MUTATED ACTL6A WILD-TYPE 
               8              385 
  ACTL6A MUTATED ACTL6A WILD-TYPE 
               8              385 
[1] "PFKP MUTATION ANALYSIS"
[1] 3
  PFKP MUTATED PFKP WILD-TYPE 
            18            375 
  PFKP MUTATED PFKP WILD-TYPE 
            18            375 
[1] "OR2J3 MUTATION ANALYSIS"
[1] 3
  OR2J3 MUTATED OR2J3 WILD-TYPE 
              9             384 
  OR2J3 MUTATED OR2J3 WILD-TYPE 
              9             384 
[1] "C20ORF160 MUTATION ANALYSIS"
[1] 3
  C20ORF160 MUTATED C20ORF160 WILD-TYPE 
                  7                 386 
  C20ORF160 MUTATED C20ORF160 WILD-TYPE 
                  7                 386 
[1] "SGK3 MUTATION ANALYSIS"
[1] 3
  SGK3 MUTATED SGK3 WILD-TYPE 
             7            386 
  SGK3 MUTATED SGK3 WILD-TYPE 
             7            386 
[1] "SMTN MUTATION ANALYSIS"
[1] 3
  SMTN MUTATED SMTN WILD-TYPE 
            20            373 
  SMTN MUTATED SMTN WILD-TYPE 
            20            373 
[1] "SLC9A11 MUTATION ANALYSIS"
[1] 3
  SLC9A11 MUTATED SLC9A11 WILD-TYPE 
               24               369 
  SLC9A11 MUTATED SLC9A11 WILD-TYPE 
               24               369 
[1] "JHDM1D MUTATION ANALYSIS"
[1] 3
  JHDM1D MUTATED JHDM1D WILD-TYPE 
              10              383 
  JHDM1D MUTATED JHDM1D WILD-TYPE 
              10              383 
[1] "GLT8D1 MUTATION ANALYSIS"
[1] 3
  GLT8D1 MUTATED GLT8D1 WILD-TYPE 
               7              386 
  GLT8D1 MUTATED GLT8D1 WILD-TYPE 
               7              386 
[1] "DAPK1 MUTATION ANALYSIS"
[1] 3
  DAPK1 MUTATED DAPK1 WILD-TYPE 
             22             371 
  DAPK1 MUTATED DAPK1 WILD-TYPE 
             22             371 
[1] "EDNRB MUTATION ANALYSIS"
[1] 3
  EDNRB MUTATED EDNRB WILD-TYPE 
             28             365 
  EDNRB MUTATED EDNRB WILD-TYPE 
             28             365 
[1] "C16ORF70 MUTATION ANALYSIS"
[1] 3
  C16ORF70 MUTATED C16ORF70 WILD-TYPE 
                 6                387 
  C16ORF70 MUTATED C16ORF70 WILD-TYPE 
                 6                387 
[1] "SLC10A6 MUTATION ANALYSIS"
[1] 3
  SLC10A6 MUTATED SLC10A6 WILD-TYPE 
                8               385 
  SLC10A6 MUTATED SLC10A6 WILD-TYPE 
                8               385 
[1] "CCDC80 MUTATION ANALYSIS"
[1] 3
  CCDC80 MUTATED CCDC80 WILD-TYPE 
              19              374 
  CCDC80 MUTATED CCDC80 WILD-TYPE 
              19              374 
[1] "DNAJC1 MUTATION ANALYSIS"
[1] 3
  DNAJC1 MUTATED DNAJC1 WILD-TYPE 
              11              382 
  DNAJC1 MUTATED DNAJC1 WILD-TYPE 
              11              382 
[1] "CADPS2 MUTATION ANALYSIS"
[1] 3
  CADPS2 MUTATED CADPS2 WILD-TYPE 
              10              383 
  CADPS2 MUTATED CADPS2 WILD-TYPE 
              10              383 
[1] "ART5 MUTATION ANALYSIS"
[1] 3
  ART5 MUTATED ART5 WILD-TYPE 
             5            388 
  ART5 MUTATED ART5 WILD-TYPE 
             5            388 
[1] "PLAGL2 MUTATION ANALYSIS"
[1] 3
  PLAGL2 MUTATED PLAGL2 WILD-TYPE 
               7              386 
  PLAGL2 MUTATED PLAGL2 WILD-TYPE 
               7              386 
[1] "C16ORF63 MUTATION ANALYSIS"
[1] 3
  C16ORF63 MUTATED C16ORF63 WILD-TYPE 
                 8                385 
  C16ORF63 MUTATED C16ORF63 WILD-TYPE 
                 8                385 
[1] "GCDH MUTATION ANALYSIS"
[1] 3
  GCDH MUTATED GCDH WILD-TYPE 
             7            386 
  GCDH MUTATED GCDH WILD-TYPE 
             7            386 
[1] "FBXO34 MUTATION ANALYSIS"
[1] 3
  FBXO34 MUTATED FBXO34 WILD-TYPE 
               9              384 
  FBXO34 MUTATED FBXO34 WILD-TYPE 
               9              384 
[1] "SERPINA1 MUTATION ANALYSIS"
[1] 3
  SERPINA1 MUTATED SERPINA1 WILD-TYPE 
                 7                386 
  SERPINA1 MUTATED SERPINA1 WILD-TYPE 
                 7                386 
[1] "KIAA1632 MUTATION ANALYSIS"
[1] 3
  KIAA1632 MUTATED KIAA1632 WILD-TYPE 
                27                366 
  KIAA1632 MUTATED KIAA1632 WILD-TYPE 
                27                366 
[1] "CCDC138 MUTATION ANALYSIS"
[1] 3
  CCDC138 MUTATED CCDC138 WILD-TYPE 
               10               383 
  CCDC138 MUTATED CCDC138 WILD-TYPE 
               10               383 
[1] "ALDH3A1 MUTATION ANALYSIS"
[1] 3
  ALDH3A1 MUTATED ALDH3A1 WILD-TYPE 
               12               381 
  ALDH3A1 MUTATED ALDH3A1 WILD-TYPE 
               12               381 
[1] "PAMR1 MUTATION ANALYSIS"
[1] 3
  PAMR1 MUTATED PAMR1 WILD-TYPE 
             15             378 
  PAMR1 MUTATED PAMR1 WILD-TYPE 
             15             378 
[1] "ZNF776 MUTATION ANALYSIS"
[1] 3
  ZNF776 MUTATED ZNF776 WILD-TYPE 
               8              385 
  ZNF776 MUTATED ZNF776 WILD-TYPE 
               8              385 
[1] "SH2B1 MUTATION ANALYSIS"
[1] 3
  SH2B1 MUTATED SH2B1 WILD-TYPE 
             11             382 
  SH2B1 MUTATED SH2B1 WILD-TYPE 
             11             382 
[1] "GPR82 MUTATION ANALYSIS"
[1] 3
  GPR82 MUTATED GPR82 WILD-TYPE 
              9             384 
  GPR82 MUTATED GPR82 WILD-TYPE 
              9             384 
[1] "ANK3 MUTATION ANALYSIS"
[1] 3
  ANK3 MUTATED ANK3 WILD-TYPE 
            47            346 
  ANK3 MUTATED ANK3 WILD-TYPE 
            47            346 
[1] "MLH1 MUTATION ANALYSIS"
[1] 3
  MLH1 MUTATED MLH1 WILD-TYPE 
             8            385 
  MLH1 MUTATED MLH1 WILD-TYPE 
             8            385 
[1] "BCKDHA MUTATION ANALYSIS"
[1] 3
  BCKDHA MUTATED BCKDHA WILD-TYPE 
              10              383 
  BCKDHA MUTATED BCKDHA WILD-TYPE 
              10              383 
[1] "MMP10 MUTATION ANALYSIS"
[1] 3
  MMP10 MUTATED MMP10 WILD-TYPE 
              9             384 
  MMP10 MUTATED MMP10 WILD-TYPE 
              9             384 
[1] "HAX1 MUTATION ANALYSIS"
[1] 3
  HAX1 MUTATED HAX1 WILD-TYPE 
             5            388 
  HAX1 MUTATED HAX1 WILD-TYPE 
             5            388 
[1] "ULK2 MUTATION ANALYSIS"
[1] 3
  ULK2 MUTATED ULK2 WILD-TYPE 
            11            382 
  ULK2 MUTATED ULK2 WILD-TYPE 
            11            382 
[1] "C11ORF70 MUTATION ANALYSIS"
[1] 3
  C11ORF70 MUTATED C11ORF70 WILD-TYPE 
                 4                389 
  C11ORF70 MUTATED C11ORF70 WILD-TYPE 
                 4                389 
[1] "AKAP11 MUTATION ANALYSIS"
[1] 3
  AKAP11 MUTATED AKAP11 WILD-TYPE 
              15              378 
  AKAP11 MUTATED AKAP11 WILD-TYPE 
              15              378 
[1] "MAN1C1 MUTATION ANALYSIS"
[1] 3
  MAN1C1 MUTATED MAN1C1 WILD-TYPE 
              10              383 
  MAN1C1 MUTATED MAN1C1 WILD-TYPE 
              10              383 
[1] "KCTD3 MUTATION ANALYSIS"
[1] 3
  KCTD3 MUTATED KCTD3 WILD-TYPE 
             14             379 
  KCTD3 MUTATED KCTD3 WILD-TYPE 
             14             379 
[1] "RALGAPB MUTATION ANALYSIS"
[1] 3
  RALGAPB MUTATED RALGAPB WILD-TYPE 
               17               376 
  RALGAPB MUTATED RALGAPB WILD-TYPE 
               17               376 
[1] "CRYGA MUTATION ANALYSIS"
[1] 3
  CRYGA MUTATED CRYGA WILD-TYPE 
             11             382 
  CRYGA MUTATED CRYGA WILD-TYPE 
             11             382 
[1] "CROT MUTATION ANALYSIS"
[1] 3
  CROT MUTATED CROT WILD-TYPE 
            15            378 
  CROT MUTATED CROT WILD-TYPE 
            15            378 
[1] "MAP7D3 MUTATION ANALYSIS"
[1] 3
  MAP7D3 MUTATED MAP7D3 WILD-TYPE 
              18              375 
  MAP7D3 MUTATED MAP7D3 WILD-TYPE 
              18              375 
[1] "ZFC3H1 MUTATION ANALYSIS"
[1] 3
  ZFC3H1 MUTATED ZFC3H1 WILD-TYPE 
              16              377 
  ZFC3H1 MUTATED ZFC3H1 WILD-TYPE 
              16              377 
[1] "NCOA7 MUTATION ANALYSIS"
[1] 3
  NCOA7 MUTATED NCOA7 WILD-TYPE 
             16             377 
  NCOA7 MUTATED NCOA7 WILD-TYPE 
             16             377 
[1] "USP13 MUTATION ANALYSIS"
[1] 3
  USP13 MUTATED USP13 WILD-TYPE 
             12             381 
  USP13 MUTATED USP13 WILD-TYPE 
             12             381 
[1] "ICAM4 MUTATION ANALYSIS"
[1] 3
  ICAM4 MUTATED ICAM4 WILD-TYPE 
              8             385 
  ICAM4 MUTATED ICAM4 WILD-TYPE 
              8             385 
[1] "USP15 MUTATION ANALYSIS"
[1] 3
  USP15 MUTATED USP15 WILD-TYPE 
              7             386 
  USP15 MUTATED USP15 WILD-TYPE 
              7             386 
[1] "FAM113B MUTATION ANALYSIS"
[1] 3
  FAM113B MUTATED FAM113B WILD-TYPE 
               15               378 
  FAM113B MUTATED FAM113B WILD-TYPE 
               15               378 
[1] "PCCA MUTATION ANALYSIS"
[1] 3
  PCCA MUTATED PCCA WILD-TYPE 
            12            381 
  PCCA MUTATED PCCA WILD-TYPE 
            12            381 
[1] "P2RX1 MUTATION ANALYSIS"
[1] 3
  P2RX1 MUTATED P2RX1 WILD-TYPE 
              4             389 
  P2RX1 MUTATED P2RX1 WILD-TYPE 
              4             389 
[1] "KIAA0649 MUTATION ANALYSIS"
[1] 3
  KIAA0649 MUTATED KIAA0649 WILD-TYPE 
                18                375 
  KIAA0649 MUTATED KIAA0649 WILD-TYPE 
                18                375 
[1] "CD79A MUTATION ANALYSIS"
[1] 3
  CD79A MUTATED CD79A WILD-TYPE 
              7             386 
  CD79A MUTATED CD79A WILD-TYPE 
              7             386 
[1] "C22ORF30 MUTATION ANALYSIS"
[1] 3
  C22ORF30 MUTATED C22ORF30 WILD-TYPE 
                 6                387 
  C22ORF30 MUTATED C22ORF30 WILD-TYPE 
                 6                387 
[1] "SRP72 MUTATION ANALYSIS"
[1] 3
  SRP72 MUTATED SRP72 WILD-TYPE 
             14             379 
  SRP72 MUTATED SRP72 WILD-TYPE 
             14             379 
[1] "PLAG1 MUTATION ANALYSIS"
[1] 3
  PLAG1 MUTATED PLAG1 WILD-TYPE 
             12             381 
  PLAG1 MUTATED PLAG1 WILD-TYPE 
             12             381 
[1] "HSPA14 MUTATION ANALYSIS"
[1] 3
  HSPA14 MUTATED HSPA14 WILD-TYPE 
               6              387 
  HSPA14 MUTATED HSPA14 WILD-TYPE 
               6              387 
[1] "CYP7B1 MUTATION ANALYSIS"
[1] 3
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
              20              373 
  CYP7B1 MUTATED CYP7B1 WILD-TYPE 
              20              373 
[1] "SLC7A10 MUTATION ANALYSIS"
[1] 3
  SLC7A10 MUTATED SLC7A10 WILD-TYPE 
                6               387 
  SLC7A10 MUTATED SLC7A10 WILD-TYPE 
                6               387 
[1] "FASTKD1 MUTATION ANALYSIS"
[1] 3
  FASTKD1 MUTATED FASTKD1 WILD-TYPE 
               12               381 
  FASTKD1 MUTATED FASTKD1 WILD-TYPE 
               12               381 
[1] "NEUROD6 MUTATION ANALYSIS"
[1] 3
  NEUROD6 MUTATED NEUROD6 WILD-TYPE 
                6               387 
  NEUROD6 MUTATED NEUROD6 WILD-TYPE 
                6               387 
[1] "KRTAP10-9 MUTATION ANALYSIS"
[1] 3
  KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE 
                  8                 385 
  KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE 
                  8                 385 
[1] "RBMX MUTATION ANALYSIS"
[1] 3
  RBMX MUTATED RBMX WILD-TYPE 
            10            383 
  RBMX MUTATED RBMX WILD-TYPE 
            10            383 
[1] "C10ORF71 MUTATION ANALYSIS"
[1] 3
  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
                12                381 
  C10ORF71 MUTATED C10ORF71 WILD-TYPE 
                12                381 
[1] "MRE11A MUTATION ANALYSIS"
[1] 3
  MRE11A MUTATED MRE11A WILD-TYPE 
               7              386 
  MRE11A MUTATED MRE11A WILD-TYPE 
               7              386 
[1] "MAP2K1 MUTATION ANALYSIS"
[1] 3
  MAP2K1 MUTATED MAP2K1 WILD-TYPE 
               7              386 
  MAP2K1 MUTATED MAP2K1 WILD-TYPE 
               7              386 
[1] "C1ORF177 MUTATION ANALYSIS"
[1] 3
  C1ORF177 MUTATED C1ORF177 WILD-TYPE 
                12                381 
  C1ORF177 MUTATED C1ORF177 WILD-TYPE 
                12                381 
[1] "IGF2BP3 MUTATION ANALYSIS"
[1] 3
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                7               386 
  IGF2BP3 MUTATED IGF2BP3 WILD-TYPE 
                7               386 
[1] "AKAP13 MUTATION ANALYSIS"
[1] 3
  AKAP13 MUTATED AKAP13 WILD-TYPE 
              32              361 
  AKAP13 MUTATED AKAP13 WILD-TYPE 
              32              361 
[1] "ABCE1 MUTATION ANALYSIS"
[1] 3
  ABCE1 MUTATED ABCE1 WILD-TYPE 
             10             383 
  ABCE1 MUTATED ABCE1 WILD-TYPE 
             10             383 
[1] "KLHL14 MUTATION ANALYSIS"
[1] 3
  KLHL14 MUTATED KLHL14 WILD-TYPE 
              19              374 
  KLHL14 MUTATED KLHL14 WILD-TYPE 
              19              374 
[1] "H2AFY MUTATION ANALYSIS"
[1] 3
  H2AFY MUTATED H2AFY WILD-TYPE 
              7             386 
  H2AFY MUTATED H2AFY WILD-TYPE 
              7             386 
[1] "USP35 MUTATION ANALYSIS"
[1] 3
  USP35 MUTATED USP35 WILD-TYPE 
              8             385 
  USP35 MUTATED USP35 WILD-TYPE 
              8             385 
[1] "ZFP36L1 MUTATION ANALYSIS"
[1] 3
  ZFP36L1 MUTATED ZFP36L1 WILD-TYPE 
                5               388 
  ZFP36L1 MUTATED ZFP36L1 WILD-TYPE 
                5               388 
[1] "RASAL2 MUTATION ANALYSIS"
[1] 3
  RASAL2 MUTATED RASAL2 WILD-TYPE 
              19              374 
  RASAL2 MUTATED RASAL2 WILD-TYPE 
              19              374 
[1] "GTF3C1 MUTATION ANALYSIS"
[1] 3
  GTF3C1 MUTATED GTF3C1 WILD-TYPE 
              35              358 
  GTF3C1 MUTATED GTF3C1 WILD-TYPE 
              35              358 
[1] "RPS20 MUTATION ANALYSIS"
[1] 3
  RPS20 MUTATED RPS20 WILD-TYPE 
              4             389 
  RPS20 MUTATED RPS20 WILD-TYPE 
              4             389 
[1] "KIAA0748 MUTATION ANALYSIS"
[1] 3
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
                16                377 
  KIAA0748 MUTATED KIAA0748 WILD-TYPE 
                16                377 
[1] "USP1 MUTATION ANALYSIS"
[1] 3
  USP1 MUTATED USP1 WILD-TYPE 
             5            388 
  USP1 MUTATED USP1 WILD-TYPE 
             5            388 
[1] "BRMS1 MUTATION ANALYSIS"
[1] 3
  BRMS1 MUTATED BRMS1 WILD-TYPE 
              6             387 
  BRMS1 MUTATED BRMS1 WILD-TYPE 
              6             387 
[1] "RNASEL MUTATION ANALYSIS"
[1] 3
  RNASEL MUTATED RNASEL WILD-TYPE 
               6              387 
  RNASEL MUTATED RNASEL WILD-TYPE 
               6              387 
[1] "TIMP3 MUTATION ANALYSIS"
[1] 3
  TIMP3 MUTATED TIMP3 WILD-TYPE 
              9             384 
  TIMP3 MUTATED TIMP3 WILD-TYPE 
              9             384 
[1] "RELT MUTATION ANALYSIS"
[1] 3
  RELT MUTATED RELT WILD-TYPE 
             7            386 
  RELT MUTATED RELT WILD-TYPE 
             7            386 
[1] "HAUS3 MUTATION ANALYSIS"
[1] 3
  HAUS3 MUTATED HAUS3 WILD-TYPE 
             11             382 
  HAUS3 MUTATED HAUS3 WILD-TYPE 
             11             382 
[1] "CCDC150 MUTATION ANALYSIS"
[1] 3
  CCDC150 MUTATED CCDC150 WILD-TYPE 
               10               383 
  CCDC150 MUTATED CCDC150 WILD-TYPE 
               10               383 
[1] "GLIPR1L2 MUTATION ANALYSIS"
[1] 3
  GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE 
                13                380 
  GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE 
                13                380 
[1] "ZNF23 MUTATION ANALYSIS"
[1] 3
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              3             390 
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              3             390 
[1] "OSGEPL1 MUTATION ANALYSIS"
[1] 3
  OSGEPL1 MUTATED OSGEPL1 WILD-TYPE 
                4               389 
  OSGEPL1 MUTATED OSGEPL1 WILD-TYPE 
                4               389 
[1] "EFHA2 MUTATION ANALYSIS"
[1] 3
  EFHA2 MUTATED EFHA2 WILD-TYPE 
             14             379 
  EFHA2 MUTATED EFHA2 WILD-TYPE 
             14             379 
[1] "CDH24 MUTATION ANALYSIS"
[1] 3
  CDH24 MUTATED CDH24 WILD-TYPE 
             14             379 
  CDH24 MUTATED CDH24 WILD-TYPE 
             14             379 
[1] "C6ORF150 MUTATION ANALYSIS"
[1] 3
  C6ORF150 MUTATED C6ORF150 WILD-TYPE 
                 8                385 
  C6ORF150 MUTATED C6ORF150 WILD-TYPE 
                 8                385 
[1] "MGA MUTATION ANALYSIS"
[1] 3
  MGA MUTATED MGA WILD-TYPE 
           28           365 
  MGA MUTATED MGA WILD-TYPE 
           28           365 
[1] "SH3RF1 MUTATION ANALYSIS"
[1] 3
  SH3RF1 MUTATED SH3RF1 WILD-TYPE 
              12              381 
  SH3RF1 MUTATED SH3RF1 WILD-TYPE 
              12              381 
[1] "HTR1E MUTATION ANALYSIS"
[1] 3
  HTR1E MUTATED HTR1E WILD-TYPE 
             12             381 
  HTR1E MUTATED HTR1E WILD-TYPE 
             12             381 
[1] "FLNB MUTATION ANALYSIS"
[1] 3
  FLNB MUTATED FLNB WILD-TYPE 
            28            365 
  FLNB MUTATED FLNB WILD-TYPE 
            28            365 
[1] "NCAPH MUTATION ANALYSIS"
[1] 3
  NCAPH MUTATED NCAPH WILD-TYPE 
             12             381 
  NCAPH MUTATED NCAPH WILD-TYPE 
             12             381 
[1] "SLFN13 MUTATION ANALYSIS"
[1] 3
  SLFN13 MUTATED SLFN13 WILD-TYPE 
               9              384 
  SLFN13 MUTATED SLFN13 WILD-TYPE 
               9              384 
[1] "GATA3 MUTATION ANALYSIS"
[1] 3
  GATA3 MUTATED GATA3 WILD-TYPE 
             18             375 
  GATA3 MUTATED GATA3 WILD-TYPE 
             18             375 
[1] "RDBP MUTATION ANALYSIS"
[1] 3
  RDBP MUTATED RDBP WILD-TYPE 
            10            383 
  RDBP MUTATED RDBP WILD-TYPE 
            10            383 
[1] "TNRC6C MUTATION ANALYSIS"
[1] 3
  TNRC6C MUTATED TNRC6C WILD-TYPE 
              15              378 
  TNRC6C MUTATED TNRC6C WILD-TYPE 
              15              378 
[1] "ZNF292 MUTATION ANALYSIS"
[1] 3
  ZNF292 MUTATED ZNF292 WILD-TYPE 
              29              364 
  ZNF292 MUTATED ZNF292 WILD-TYPE 
              29              364 
[1] "TPTE2 MUTATION ANALYSIS"
[1] 3
  TPTE2 MUTATED TPTE2 WILD-TYPE 
             17             376 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
             17             376 
[1] "FBXO48 MUTATION ANALYSIS"
[1] 3
  FBXO48 MUTATED FBXO48 WILD-TYPE 
               5              388 
  FBXO48 MUTATED FBXO48 WILD-TYPE 
               5              388 
[1] "KRTAP5-5 MUTATION ANALYSIS"
[1] 3
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 6                387 
  KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE 
                 6                387 
[1] "SERPINB12 MUTATION ANALYSIS"
[1] 3
  SERPINB12 MUTATED SERPINB12 WILD-TYPE 
                  6                 387 
  SERPINB12 MUTATED SERPINB12 WILD-TYPE 
                  6                 387 
[1] "TAF7L MUTATION ANALYSIS"
[1] 3
  TAF7L MUTATED TAF7L WILD-TYPE 
              9             384 
  TAF7L MUTATED TAF7L WILD-TYPE 
              9             384 
[1] "INTS12 MUTATION ANALYSIS"
[1] 3
  INTS12 MUTATED INTS12 WILD-TYPE 
               6              387 
  INTS12 MUTATED INTS12 WILD-TYPE 
               6              387 
[1] "CTSA MUTATION ANALYSIS"
[1] 3
  CTSA MUTATED CTSA WILD-TYPE 
             5            388 
  CTSA MUTATED CTSA WILD-TYPE 
             5            388 
[1] "C1QA MUTATION ANALYSIS"
[1] 3
  C1QA MUTATED C1QA WILD-TYPE 
             5            388 
  C1QA MUTATED C1QA WILD-TYPE 
             5            388 
[1] "KCNN3 MUTATION ANALYSIS"
[1] 3
  KCNN3 MUTATED KCNN3 WILD-TYPE 
             10             383 
  KCNN3 MUTATED KCNN3 WILD-TYPE 
             10             383 
[1] "NPHS1 MUTATION ANALYSIS"
[1] 3
  NPHS1 MUTATED NPHS1 WILD-TYPE 
             16             377 
  NPHS1 MUTATED NPHS1 WILD-TYPE 
             16             377 
[1] "HSP90B1 MUTATION ANALYSIS"
[1] 3
  HSP90B1 MUTATED HSP90B1 WILD-TYPE 
                9               384 
  HSP90B1 MUTATED HSP90B1 WILD-TYPE 
                9               384 
[1] "P2RY4 MUTATION ANALYSIS"
[1] 3
  P2RY4 MUTATED P2RY4 WILD-TYPE 
             12             381 
  P2RY4 MUTATED P2RY4 WILD-TYPE 
             12             381 
[1] "LRFN3 MUTATION ANALYSIS"
[1] 3
  LRFN3 MUTATED LRFN3 WILD-TYPE 
             22             371 
  LRFN3 MUTATED LRFN3 WILD-TYPE 
             22             371 
[1] "SMARCB1 MUTATION ANALYSIS"
[1] 3
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
               13               380 
  SMARCB1 MUTATED SMARCB1 WILD-TYPE 
               13               380 
[1] "ITGA6 MUTATION ANALYSIS"
[1] 3
  ITGA6 MUTATED ITGA6 WILD-TYPE 
              9             384 
  ITGA6 MUTATED ITGA6 WILD-TYPE 
              9             384 
[1] "TRIP11 MUTATION ANALYSIS"
[1] 3
  TRIP11 MUTATED TRIP11 WILD-TYPE 
              13              380 
  TRIP11 MUTATED TRIP11 WILD-TYPE 
              13              380 
[1] "PNPLA7 MUTATION ANALYSIS"
[1] 3
  PNPLA7 MUTATED PNPLA7 WILD-TYPE 
              23              370 
  PNPLA7 MUTATED PNPLA7 WILD-TYPE 
              23              370 
[1] "C7ORF49 MUTATION ANALYSIS"
[1] 3
  C7ORF49 MUTATED C7ORF49 WILD-TYPE 
                7               386 
  C7ORF49 MUTATED C7ORF49 WILD-TYPE 
                7               386 
[1] "C14ORF50 MUTATION ANALYSIS"
[1] 3
  C14ORF50 MUTATED C14ORF50 WILD-TYPE 
                 8                385 
  C14ORF50 MUTATED C14ORF50 WILD-TYPE 
                 8                385 
[1] "PKN1 MUTATION ANALYSIS"
[1] 3
  PKN1 MUTATED PKN1 WILD-TYPE 
            10            383 
  PKN1 MUTATED PKN1 WILD-TYPE 
            10            383 
[1] "ASAP2 MUTATION ANALYSIS"
[1] 3
  ASAP2 MUTATED ASAP2 WILD-TYPE 
             16             377 
  ASAP2 MUTATED ASAP2 WILD-TYPE 
             16             377 
[1] "FAM133A MUTATION ANALYSIS"
[1] 3
  FAM133A MUTATED FAM133A WILD-TYPE 
                9               384 
  FAM133A MUTATED FAM133A WILD-TYPE 
                9               384 
[1] "METTL6 MUTATION ANALYSIS"
[1] 3
  METTL6 MUTATED METTL6 WILD-TYPE 
               5              388 
  METTL6 MUTATED METTL6 WILD-TYPE 
               5              388 
[1] "EFHD1 MUTATION ANALYSIS"
[1] 3
  EFHD1 MUTATED EFHD1 WILD-TYPE 
              6             387 
  EFHD1 MUTATED EFHD1 WILD-TYPE 
              6             387 
[1] "VPS13A MUTATION ANALYSIS"
[1] 3
  VPS13A MUTATED VPS13A WILD-TYPE 
              38              355 
  VPS13A MUTATED VPS13A WILD-TYPE 
              38              355 
[1] "ANKRD28 MUTATION ANALYSIS"
[1] 3
  ANKRD28 MUTATED ANKRD28 WILD-TYPE 
               13               380 
  ANKRD28 MUTATED ANKRD28 WILD-TYPE 
               13               380 
[1] "OR5M3 MUTATION ANALYSIS"
[1] 3
  OR5M3 MUTATED OR5M3 WILD-TYPE 
             19             374 
  OR5M3 MUTATED OR5M3 WILD-TYPE 
             19             374 
[1] "EXPH5 MUTATION ANALYSIS"
[1] 3
  EXPH5 MUTATED EXPH5 WILD-TYPE 
             15             378 
  EXPH5 MUTATED EXPH5 WILD-TYPE 
             15             378 
[1] "ABCB4 MUTATION ANALYSIS"
[1] 3
  ABCB4 MUTATED ABCB4 WILD-TYPE 
             26             367 
  ABCB4 MUTATED ABCB4 WILD-TYPE 
             26             367 
[1] "HRNR MUTATION ANALYSIS"
[1] 3
  HRNR MUTATED HRNR WILD-TYPE 
            42            351 
  HRNR MUTATED HRNR WILD-TYPE 
            42            351 
[1] "BAHCC1 MUTATION ANALYSIS"
[1] 3
  BAHCC1 MUTATED BAHCC1 WILD-TYPE 
              12              381 
  BAHCC1 MUTATED BAHCC1 WILD-TYPE 
              12              381 
[1] "C1RL MUTATION ANALYSIS"
[1] 3
  C1RL MUTATED C1RL WILD-TYPE 
             6            387 
  C1RL MUTATED C1RL WILD-TYPE 
             6            387 
[1] "USP21 MUTATION ANALYSIS"
[1] 3
  USP21 MUTATED USP21 WILD-TYPE 
             13             380 
  USP21 MUTATED USP21 WILD-TYPE 
             13             380 
[1] "ZBTB38 MUTATION ANALYSIS"
[1] 3
  ZBTB38 MUTATED ZBTB38 WILD-TYPE 
              20              373 
  ZBTB38 MUTATED ZBTB38 WILD-TYPE 
              20              373 
[1] "CBLN3 MUTATION ANALYSIS"
[1] 3
  CBLN3 MUTATED CBLN3 WILD-TYPE 
              7             386 
  CBLN3 MUTATED CBLN3 WILD-TYPE 
              7             386 
[1] "AXIN2 MUTATION ANALYSIS"
[1] 3
  AXIN2 MUTATED AXIN2 WILD-TYPE 
             20             373 
  AXIN2 MUTATED AXIN2 WILD-TYPE 
             20             373 
[1] "CFI MUTATION ANALYSIS"
[1] 3
  CFI MUTATED CFI WILD-TYPE 
           13           380 
  CFI MUTATED CFI WILD-TYPE 
           13           380 
[1] "UNC50 MUTATION ANALYSIS"
[1] 3
  UNC50 MUTATED UNC50 WILD-TYPE 
              4             389 
  UNC50 MUTATED UNC50 WILD-TYPE 
              4             389 
[1] "TH1L MUTATION ANALYSIS"
[1] 3
  TH1L MUTATED TH1L WILD-TYPE 
            11            382 
  TH1L MUTATED TH1L WILD-TYPE 
            11            382 
[1] "HEXDC MUTATION ANALYSIS"
[1] 3
  HEXDC MUTATED HEXDC WILD-TYPE 
              8             385 
  HEXDC MUTATED HEXDC WILD-TYPE 
              8             385 
[1] "SOS2 MUTATION ANALYSIS"
[1] 3
  SOS2 MUTATED SOS2 WILD-TYPE 
            18            375 
  SOS2 MUTATED SOS2 WILD-TYPE 
            18            375 
[1] "SPOCD1 MUTATION ANALYSIS"
[1] 3
  SPOCD1 MUTATED SPOCD1 WILD-TYPE 
              13              380 
  SPOCD1 MUTATED SPOCD1 WILD-TYPE 
              13              380 
[1] "STX2 MUTATION ANALYSIS"
[1] 3
  STX2 MUTATED STX2 WILD-TYPE 
             6            387 
  STX2 MUTATED STX2 WILD-TYPE 
             6            387 
[1] "SMAD7 MUTATION ANALYSIS"
[1] 3
  SMAD7 MUTATED SMAD7 WILD-TYPE 
              7             386 
  SMAD7 MUTATED SMAD7 WILD-TYPE 
              7             386 
[1] "GNPNAT1 MUTATION ANALYSIS"
[1] 3
  GNPNAT1 MUTATED GNPNAT1 WILD-TYPE 
                6               387 
  GNPNAT1 MUTATED GNPNAT1 WILD-TYPE 
                6               387 
[1] "ALDH2 MUTATION ANALYSIS"
[1] 3
  ALDH2 MUTATED ALDH2 WILD-TYPE 
             13             380 
  ALDH2 MUTATED ALDH2 WILD-TYPE 
             13             380 
[1] "TMEM55A MUTATION ANALYSIS"
[1] 3
  TMEM55A MUTATED TMEM55A WILD-TYPE 
                3               390 
  TMEM55A MUTATED TMEM55A WILD-TYPE 
                3               390 
[1] "SPATA5L1 MUTATION ANALYSIS"
[1] 3
  SPATA5L1 MUTATED SPATA5L1 WILD-TYPE 
                 6                387 
  SPATA5L1 MUTATED SPATA5L1 WILD-TYPE 
                 6                387 
[1] "CDC42EP1 MUTATION ANALYSIS"
[1] 3
  CDC42EP1 MUTATED CDC42EP1 WILD-TYPE 
                 4                389 
  CDC42EP1 MUTATED CDC42EP1 WILD-TYPE 
                 4                389 
[1] "SPATA20 MUTATION ANALYSIS"
[1] 3
  SPATA20 MUTATED SPATA20 WILD-TYPE 
               17               376 
  SPATA20 MUTATED SPATA20 WILD-TYPE 
               17               376 
[1] "KIN MUTATION ANALYSIS"
[1] 3
  KIN MUTATED KIN WILD-TYPE 
            7           386 
  KIN MUTATED KIN WILD-TYPE 
            7           386 
[1] "TMEM87B MUTATION ANALYSIS"
[1] 3
  TMEM87B MUTATED TMEM87B WILD-TYPE 
                5               388 
  TMEM87B MUTATED TMEM87B WILD-TYPE 
                5               388 
[1] "SP100 MUTATION ANALYSIS"
[1] 3
  SP100 MUTATED SP100 WILD-TYPE 
             18             375 
  SP100 MUTATED SP100 WILD-TYPE 
             18             375 
[1] "SOAT1 MUTATION ANALYSIS"
[1] 3
  SOAT1 MUTATED SOAT1 WILD-TYPE 
             10             383 
  SOAT1 MUTATED SOAT1 WILD-TYPE 
             10             383 
[1] "IL7R MUTATION ANALYSIS"
[1] 3
  IL7R MUTATED IL7R WILD-TYPE 
            14            379 
  IL7R MUTATED IL7R WILD-TYPE 
            14            379 
[1] "KRT222 MUTATION ANALYSIS"
[1] 3
  KRT222 MUTATED KRT222 WILD-TYPE 
               8              385 
  KRT222 MUTATED KRT222 WILD-TYPE 
               8              385 
[1] "AP2A2 MUTATION ANALYSIS"
[1] 3
  AP2A2 MUTATED AP2A2 WILD-TYPE 
             14             379 
  AP2A2 MUTATED AP2A2 WILD-TYPE 
             14             379 
[1] "RUSC2 MUTATION ANALYSIS"
[1] 3
  RUSC2 MUTATED RUSC2 WILD-TYPE 
             20             373 
  RUSC2 MUTATED RUSC2 WILD-TYPE 
             20             373 
[1] "FAM186B MUTATION ANALYSIS"
[1] 3
  FAM186B MUTATED FAM186B WILD-TYPE 
               13               380 
  FAM186B MUTATED FAM186B WILD-TYPE 
               13               380 
[1] "MEGF8 MUTATION ANALYSIS"
[1] 3
  MEGF8 MUTATED MEGF8 WILD-TYPE 
             30             363 
  MEGF8 MUTATED MEGF8 WILD-TYPE 
             30             363 
[1] "CTSD MUTATION ANALYSIS"
[1] 3
  CTSD MUTATED CTSD WILD-TYPE 
             8            385 
  CTSD MUTATED CTSD WILD-TYPE 
             8            385 
[1] "UBQLN2 MUTATION ANALYSIS"
[1] 3
  UBQLN2 MUTATED UBQLN2 WILD-TYPE 
               7              386 
  UBQLN2 MUTATED UBQLN2 WILD-TYPE 
               7              386 
[1] "FNDC4 MUTATION ANALYSIS"
[1] 3
  FNDC4 MUTATED FNDC4 WILD-TYPE 
              6             387 
  FNDC4 MUTATED FNDC4 WILD-TYPE 
              6             387 
[1] "LIPH MUTATION ANALYSIS"
[1] 3
  LIPH MUTATED LIPH WILD-TYPE 
             7            386 
  LIPH MUTATED LIPH WILD-TYPE 
             7            386 
[1] "FBXO43 MUTATION ANALYSIS"
[1] 3
  FBXO43 MUTATED FBXO43 WILD-TYPE 
              10              383 
  FBXO43 MUTATED FBXO43 WILD-TYPE 
              10              383 
[1] "HOXB7 MUTATION ANALYSIS"
[1] 3
  HOXB7 MUTATED HOXB7 WILD-TYPE 
              6             387 
  HOXB7 MUTATED HOXB7 WILD-TYPE 
              6             387 
[1] "AGAP6 MUTATION ANALYSIS"
[1] 3
  AGAP6 MUTATED AGAP6 WILD-TYPE 
             10             383 
  AGAP6 MUTATED AGAP6 WILD-TYPE 
             10             383 
[1] "GPR160 MUTATION ANALYSIS"
[1] 3
  GPR160 MUTATED GPR160 WILD-TYPE 
               8              385 
  GPR160 MUTATED GPR160 WILD-TYPE 
               8              385 
[1] "FAM46D MUTATION ANALYSIS"
[1] 3
  FAM46D MUTATED FAM46D WILD-TYPE 
              10              383 
  FAM46D MUTATED FAM46D WILD-TYPE 
              10              383 
[1] "CSF3R MUTATION ANALYSIS"
[1] 3
  CSF3R MUTATED CSF3R WILD-TYPE 
             12             381 
  CSF3R MUTATED CSF3R WILD-TYPE 
             12             381 
[1] "PRMT3 MUTATION ANALYSIS"
[1] 3
  PRMT3 MUTATED PRMT3 WILD-TYPE 
              9             384 
  PRMT3 MUTATED PRMT3 WILD-TYPE 
              9             384 
[1] "FGF7 MUTATION ANALYSIS"
[1] 3
  FGF7 MUTATED FGF7 WILD-TYPE 
             5            388 
  FGF7 MUTATED FGF7 WILD-TYPE 
             5            388 
[1] "AGAP5 MUTATION ANALYSIS"
[1] 3
  AGAP5 MUTATED AGAP5 WILD-TYPE 
              8             385 
  AGAP5 MUTATED AGAP5 WILD-TYPE 
              8             385 
[1] "STEAP2 MUTATION ANALYSIS"
[1] 3
  STEAP2 MUTATED STEAP2 WILD-TYPE 
               6              387 
  STEAP2 MUTATED STEAP2 WILD-TYPE 
               6              387 
[1] "CDKL3 MUTATION ANALYSIS"
[1] 3
  CDKL3 MUTATED CDKL3 WILD-TYPE 
              7             386 
  CDKL3 MUTATED CDKL3 WILD-TYPE 
              7             386 
[1] "FAM113A MUTATION ANALYSIS"
[1] 3
  FAM113A MUTATED FAM113A WILD-TYPE 
                9               384 
  FAM113A MUTATED FAM113A WILD-TYPE 
                9               384 
[1] "ZNF207 MUTATION ANALYSIS"
[1] 3
  ZNF207 MUTATED ZNF207 WILD-TYPE 
               8              385 
  ZNF207 MUTATED ZNF207 WILD-TYPE 
               8              385 
[1] "ICAM3 MUTATION ANALYSIS"
[1] 3
  ICAM3 MUTATED ICAM3 WILD-TYPE 
              4             389 
  ICAM3 MUTATED ICAM3 WILD-TYPE 
              4             389 
[1] "MKL1 MUTATION ANALYSIS"
[1] 3
  MKL1 MUTATED MKL1 WILD-TYPE 
            15            378 
  MKL1 MUTATED MKL1 WILD-TYPE 
            15            378 
[1] "HSP90AA1 MUTATION ANALYSIS"
[1] 3
  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE 
                12                381 
  HSP90AA1 MUTATED HSP90AA1 WILD-TYPE 
                12                381 
[1] "PRPF4B MUTATION ANALYSIS"
[1] 3
  PRPF4B MUTATED PRPF4B WILD-TYPE 
              10              383 
  PRPF4B MUTATED PRPF4B WILD-TYPE 
              10              383 
[1] "BRCA2 MUTATION ANALYSIS"
[1] 3
  BRCA2 MUTATED BRCA2 WILD-TYPE 
             33             360 
  BRCA2 MUTATED BRCA2 WILD-TYPE 
             33             360 
[1] "MAP3K1 MUTATION ANALYSIS"
[1] 3
  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
              15              378 
  MAP3K1 MUTATED MAP3K1 WILD-TYPE 
              15              378 
[1] "ASPN MUTATION ANALYSIS"
[1] 3
  ASPN MUTATED ASPN WILD-TYPE 
             6            387 
  ASPN MUTATED ASPN WILD-TYPE 
             6            387 
[1] "PHACTR1 MUTATION ANALYSIS"
[1] 3
  PHACTR1 MUTATED PHACTR1 WILD-TYPE 
               10               383 
  PHACTR1 MUTATED PHACTR1 WILD-TYPE 
               10               383 
[1] "DNAJB13 MUTATION ANALYSIS"
[1] 3
  DNAJB13 MUTATED DNAJB13 WILD-TYPE 
                6               387 
  DNAJB13 MUTATED DNAJB13 WILD-TYPE 
                6               387 
[1] "KDM3B MUTATION ANALYSIS"
[1] 3
  KDM3B MUTATED KDM3B WILD-TYPE 
             20             373 
  KDM3B MUTATED KDM3B WILD-TYPE 
             20             373 
[1] "PDCD1 MUTATION ANALYSIS"
[1] 3
  PDCD1 MUTATED PDCD1 WILD-TYPE 
              5             388 
  PDCD1 MUTATED PDCD1 WILD-TYPE 
              5             388 
[1] "SYCP2L MUTATION ANALYSIS"
[1] 3
  SYCP2L MUTATED SYCP2L WILD-TYPE 
              13              380 
  SYCP2L MUTATED SYCP2L WILD-TYPE 
              13              380 
[1] "RNF111 MUTATION ANALYSIS"
[1] 3
  RNF111 MUTATED RNF111 WILD-TYPE 
              11              382 
  RNF111 MUTATED RNF111 WILD-TYPE 
              11              382 
[1] "OPLAH MUTATION ANALYSIS"
[1] 3
  OPLAH MUTATED OPLAH WILD-TYPE 
             23             370 
  OPLAH MUTATED OPLAH WILD-TYPE 
             23             370 
[1] "DYX1C1 MUTATION ANALYSIS"
[1] 3
  DYX1C1 MUTATED DYX1C1 WILD-TYPE 
              12              381 
  DYX1C1 MUTATED DYX1C1 WILD-TYPE 
              12              381 
[1] "RSF1 MUTATION ANALYSIS"
[1] 3
  RSF1 MUTATED RSF1 WILD-TYPE 
            15            378 
  RSF1 MUTATED RSF1 WILD-TYPE 
            15            378 
[1] "PRICKLE4 MUTATION ANALYSIS"
[1] 3
  PRICKLE4 MUTATED PRICKLE4 WILD-TYPE 
                 6                387 
  PRICKLE4 MUTATED PRICKLE4 WILD-TYPE 
                 6                387 
[1] "ANTXR1 MUTATION ANALYSIS"
[1] 3
  ANTXR1 MUTATED ANTXR1 WILD-TYPE 
              10              383 
  ANTXR1 MUTATED ANTXR1 WILD-TYPE 
              10              383 
[1] "DNAJA1 MUTATION ANALYSIS"
[1] 3
  DNAJA1 MUTATED DNAJA1 WILD-TYPE 
               9              384 
  DNAJA1 MUTATED DNAJA1 WILD-TYPE 
               9              384 
[1] "C11ORF80 MUTATION ANALYSIS"
[1] 3
  C11ORF80 MUTATED C11ORF80 WILD-TYPE 
                 6                387 
  C11ORF80 MUTATED C11ORF80 WILD-TYPE 
                 6                387 
[1] "CLCA4 MUTATION ANALYSIS"
[1] 3
  CLCA4 MUTATED CLCA4 WILD-TYPE 
             17             376 
  CLCA4 MUTATED CLCA4 WILD-TYPE 
             17             376 
[1] "ANAPC1 MUTATION ANALYSIS"
[1] 3
  ANAPC1 MUTATED ANAPC1 WILD-TYPE 
              16              377 
  ANAPC1 MUTATED ANAPC1 WILD-TYPE 
              16              377 
[1] "SYT4 MUTATION ANALYSIS"
[1] 3
  SYT4 MUTATED SYT4 WILD-TYPE 
            14            379 
  SYT4 MUTATED SYT4 WILD-TYPE 
            14            379 
[1] "TAF6 MUTATION ANALYSIS"
[1] 3
  TAF6 MUTATED TAF6 WILD-TYPE 
            14            379 
  TAF6 MUTATED TAF6 WILD-TYPE 
            14            379 
[1] "C9ORF41 MUTATION ANALYSIS"
[1] 3
  C9ORF41 MUTATED C9ORF41 WILD-TYPE 
                5               388 
  C9ORF41 MUTATED C9ORF41 WILD-TYPE 
                5               388 
[1] "MARCH7 MUTATION ANALYSIS"
[1] 3
  MARCH7 MUTATED MARCH7 WILD-TYPE 
               6              387 
  MARCH7 MUTATED MARCH7 WILD-TYPE 
               6              387 
[1] "TAPT1 MUTATION ANALYSIS"
[1] 3
  TAPT1 MUTATED TAPT1 WILD-TYPE 
              6             387 
  TAPT1 MUTATED TAPT1 WILD-TYPE 
              6             387 
[1] "SDAD1 MUTATION ANALYSIS"
[1] 3
  SDAD1 MUTATED SDAD1 WILD-TYPE 
              8             385 
  SDAD1 MUTATED SDAD1 WILD-TYPE 
              8             385 
[1] "PPIAL4A MUTATION ANALYSIS"
[1] 3
  PPIAL4A MUTATED PPIAL4A WILD-TYPE 
                3               390 
  PPIAL4A MUTATED PPIAL4A WILD-TYPE 
                3               390 
[1] "SCN10A MUTATION ANALYSIS"
[1] 3
  SCN10A MUTATED SCN10A WILD-TYPE 
              39              354 
  SCN10A MUTATED SCN10A WILD-TYPE 
              39              354 
[1] "PSD MUTATION ANALYSIS"
[1] 3
  PSD MUTATED PSD WILD-TYPE 
           18           375 
  PSD MUTATED PSD WILD-TYPE 
           18           375 
[1] "PODN MUTATION ANALYSIS"
[1] 3
  PODN MUTATED PODN WILD-TYPE 
            12            381 
  PODN MUTATED PODN WILD-TYPE 
            12            381 
[1] "NUFIP2 MUTATION ANALYSIS"
[1] 3
  NUFIP2 MUTATED NUFIP2 WILD-TYPE 
               8              385 
  NUFIP2 MUTATED NUFIP2 WILD-TYPE 
               8              385 
[1] "FRYL MUTATION ANALYSIS"
[1] 3
  FRYL MUTATED FRYL WILD-TYPE 
            24            369 
  FRYL MUTATED FRYL WILD-TYPE 
            24            369 
[1] "MYCN MUTATION ANALYSIS"
[1] 3
  MYCN MUTATED MYCN WILD-TYPE 
             7            386 
  MYCN MUTATED MYCN WILD-TYPE 
             7            386 
[1] "TNK2 MUTATION ANALYSIS"
[1] 3
  TNK2 MUTATED TNK2 WILD-TYPE 
            18            375 
  TNK2 MUTATED TNK2 WILD-TYPE 
            18            375 
[1] "C2ORF42 MUTATION ANALYSIS"
[1] 3
  C2ORF42 MUTATED C2ORF42 WILD-TYPE 
               12               381 
  C2ORF42 MUTATED C2ORF42 WILD-TYPE 
               12               381 
[1] "ADCY10 MUTATION ANALYSIS"
[1] 3
  ADCY10 MUTATED ADCY10 WILD-TYPE 
              20              373 
  ADCY10 MUTATED ADCY10 WILD-TYPE 
              20              373 
[1] "QRFPR MUTATION ANALYSIS"
[1] 3
  QRFPR MUTATED QRFPR WILD-TYPE 
             12             381 
  QRFPR MUTATED QRFPR WILD-TYPE 
             12             381 
[1] "C19ORF26 MUTATION ANALYSIS"
[1] 3
  C19ORF26 MUTATED C19ORF26 WILD-TYPE 
                10                383 
  C19ORF26 MUTATED C19ORF26 WILD-TYPE 
                10                383 
[1] "SPANXC MUTATION ANALYSIS"
[1] 3
  SPANXC MUTATED SPANXC WILD-TYPE 
               8              385 
  SPANXC MUTATED SPANXC WILD-TYPE 
               8              385 
[1] "XRN1 MUTATION ANALYSIS"
[1] 3
  XRN1 MUTATED XRN1 WILD-TYPE 
            24            369 
  XRN1 MUTATED XRN1 WILD-TYPE 
            24            369 
[1] "SORBS2 MUTATION ANALYSIS"
[1] 3
  SORBS2 MUTATED SORBS2 WILD-TYPE 
              21              372 
  SORBS2 MUTATED SORBS2 WILD-TYPE 
              21              372 
[1] "LRP12 MUTATION ANALYSIS"
[1] 3
  LRP12 MUTATED LRP12 WILD-TYPE 
             30             363 
  LRP12 MUTATED LRP12 WILD-TYPE 
             30             363 
[1] "KIF13A MUTATION ANALYSIS"
[1] 3
  KIF13A MUTATED KIF13A WILD-TYPE 
              19              374 
  KIF13A MUTATED KIF13A WILD-TYPE 
              19              374 
[1] "C6 MUTATION ANALYSIS"
[1] 3
  C6 MUTATED C6 WILD-TYPE 
          11          382 
  C6 MUTATED C6 WILD-TYPE 
          11          382 
[1] "HIVEP3 MUTATION ANALYSIS"
[1] 3
  HIVEP3 MUTATED HIVEP3 WILD-TYPE 
              30              363 
  HIVEP3 MUTATED HIVEP3 WILD-TYPE 
              30              363 
[1] "FAM123C MUTATION ANALYSIS"
[1] 3
  FAM123C MUTATED FAM123C WILD-TYPE 
               13               380 
  FAM123C MUTATED FAM123C WILD-TYPE 
               13               380 
[1] "EPHB6 MUTATION ANALYSIS"
[1] 3
  EPHB6 MUTATED EPHB6 WILD-TYPE 
             17             376 
  EPHB6 MUTATED EPHB6 WILD-TYPE 
             17             376 
[1] "PTPN13 MUTATION ANALYSIS"
[1] 3
  PTPN13 MUTATED PTPN13 WILD-TYPE 
              29              364 
  PTPN13 MUTATED PTPN13 WILD-TYPE 
              29              364 
[1] "CALCRL MUTATION ANALYSIS"
[1] 3
  CALCRL MUTATED CALCRL WILD-TYPE 
              10              383 
  CALCRL MUTATED CALCRL WILD-TYPE 
              10              383 
[1] "AZGP1 MUTATION ANALYSIS"
[1] 3
  AZGP1 MUTATED AZGP1 WILD-TYPE 
              4             389 
  AZGP1 MUTATED AZGP1 WILD-TYPE 
              4             389 
[1] "DOK1 MUTATION ANALYSIS"
[1] 3
  DOK1 MUTATED DOK1 WILD-TYPE 
             5            388 
  DOK1 MUTATED DOK1 WILD-TYPE 
             5            388 
[1] "CDC5L MUTATION ANALYSIS"
[1] 3
  CDC5L MUTATED CDC5L WILD-TYPE 
             16             377 
  CDC5L MUTATED CDC5L WILD-TYPE 
             16             377 
[1] "KIF2B MUTATION ANALYSIS"
[1] 3
  KIF2B MUTATED KIF2B WILD-TYPE 
             32             361 
  KIF2B MUTATED KIF2B WILD-TYPE 
             32             361 
[1] "NOBOX MUTATION ANALYSIS"
[1] 3
  NOBOX MUTATED NOBOX WILD-TYPE 
             10             383 
  NOBOX MUTATED NOBOX WILD-TYPE 
             10             383 
[1] "GPR45 MUTATION ANALYSIS"
[1] 3
  GPR45 MUTATED GPR45 WILD-TYPE 
             16             377 
  GPR45 MUTATED GPR45 WILD-TYPE 
             16             377 
[1] "ACTR8 MUTATION ANALYSIS"
[1] 3
  ACTR8 MUTATED ACTR8 WILD-TYPE 
             11             382 
  ACTR8 MUTATED ACTR8 WILD-TYPE 
             11             382 
[1] "SCAMP2 MUTATION ANALYSIS"
[1] 3
  SCAMP2 MUTATED SCAMP2 WILD-TYPE 
               7              386 
  SCAMP2 MUTATED SCAMP2 WILD-TYPE 
               7              386 
[1] "HMGCLL1 MUTATION ANALYSIS"
[1] 3
  HMGCLL1 MUTATED HMGCLL1 WILD-TYPE 
               10               383 
  HMGCLL1 MUTATED HMGCLL1 WILD-TYPE 
               10               383 
[1] "COL11A1 MUTATION ANALYSIS"
[1] 3
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               41               352 
  COL11A1 MUTATED COL11A1 WILD-TYPE 
               41               352 
[1] "BIN3 MUTATION ANALYSIS"
[1] 3
  BIN3 MUTATED BIN3 WILD-TYPE 
             4            389 
  BIN3 MUTATED BIN3 WILD-TYPE 
             4            389 
[1] "SLC25A17 MUTATION ANALYSIS"
[1] 3
  SLC25A17 MUTATED SLC25A17 WILD-TYPE 
                 4                389 
  SLC25A17 MUTATED SLC25A17 WILD-TYPE 
                 4                389 
[1] "CTSO MUTATION ANALYSIS"
[1] 3
  CTSO MUTATED CTSO WILD-TYPE 
             6            387 
  CTSO MUTATED CTSO WILD-TYPE 
             6            387 
[1] "PAM MUTATION ANALYSIS"
[1] 3
  PAM MUTATED PAM WILD-TYPE 
            9           384 
  PAM MUTATED PAM WILD-TYPE 
            9           384 
[1] "TLE1 MUTATION ANALYSIS"
[1] 3
  TLE1 MUTATED TLE1 WILD-TYPE 
            12            381 
  TLE1 MUTATED TLE1 WILD-TYPE 
            12            381 
[1] "ZNF285 MUTATION ANALYSIS"
[1] 3
  ZNF285 MUTATED ZNF285 WILD-TYPE 
               9              384 
  ZNF285 MUTATED ZNF285 WILD-TYPE 
               9              384 
[1] "PTOV1 MUTATION ANALYSIS"
[1] 3
  PTOV1 MUTATED PTOV1 WILD-TYPE 
             11             382 
  PTOV1 MUTATED PTOV1 WILD-TYPE 
             11             382 
[1] "SLC6A11 MUTATION ANALYSIS"
[1] 3
  SLC6A11 MUTATED SLC6A11 WILD-TYPE 
               10               383 
  SLC6A11 MUTATED SLC6A11 WILD-TYPE 
               10               383 
[1] "BRCA1 MUTATION ANALYSIS"
[1] 3
  BRCA1 MUTATED BRCA1 WILD-TYPE 
             15             378 
  BRCA1 MUTATED BRCA1 WILD-TYPE 
             15             378 
[1] "HAUS6 MUTATION ANALYSIS"
[1] 3
  HAUS6 MUTATED HAUS6 WILD-TYPE 
             13             380 
  HAUS6 MUTATED HAUS6 WILD-TYPE 
             13             380 
[1] "ARHGEF11 MUTATION ANALYSIS"
[1] 3
  ARHGEF11 MUTATED ARHGEF11 WILD-TYPE 
                21                372 
  ARHGEF11 MUTATED ARHGEF11 WILD-TYPE 
                21                372 
[1] "MGST2 MUTATION ANALYSIS"
[1] 3
  MGST2 MUTATED MGST2 WILD-TYPE 
              3             390 
  MGST2 MUTATED MGST2 WILD-TYPE 
              3             390 
[1] "CD4 MUTATION ANALYSIS"
[1] 3
  CD4 MUTATED CD4 WILD-TYPE 
           11           382 
  CD4 MUTATED CD4 WILD-TYPE 
           11           382 
[1] "RP1L1 MUTATION ANALYSIS"
[1] 3
  RP1L1 MUTATED RP1L1 WILD-TYPE 
             31             362 
  RP1L1 MUTATED RP1L1 WILD-TYPE 
             31             362 
[1] "UVRAG MUTATION ANALYSIS"
[1] 3
  UVRAG MUTATED UVRAG WILD-TYPE 
             12             381 
  UVRAG MUTATED UVRAG WILD-TYPE 
             12             381 
[1] "CHD1 MUTATION ANALYSIS"
[1] 3
  CHD1 MUTATED CHD1 WILD-TYPE 
            13            380 
  CHD1 MUTATED CHD1 WILD-TYPE 
            13            380 
[1] "ZMYND8 MUTATION ANALYSIS"
[1] 3
  ZMYND8 MUTATED ZMYND8 WILD-TYPE 
              19              374 
  ZMYND8 MUTATED ZMYND8 WILD-TYPE 
              19              374 
[1] "GPATCH4 MUTATION ANALYSIS"
[1] 3
  GPATCH4 MUTATED GPATCH4 WILD-TYPE 
                9               384 
  GPATCH4 MUTATED GPATCH4 WILD-TYPE 
                9               384 
[1] "MASTL MUTATION ANALYSIS"
[1] 3
  MASTL MUTATED MASTL WILD-TYPE 
             13             380 
  MASTL MUTATED MASTL WILD-TYPE 
             13             380 
[1] "KIRREL2 MUTATION ANALYSIS"
[1] 3
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               16               377 
  KIRREL2 MUTATED KIRREL2 WILD-TYPE 
               16               377 
[1] "HSPB8 MUTATION ANALYSIS"
[1] 3
  HSPB8 MUTATED HSPB8 WILD-TYPE 
              6             387 
  HSPB8 MUTATED HSPB8 WILD-TYPE 
              6             387 
[1] "GTF3C4 MUTATION ANALYSIS"
[1] 3
  GTF3C4 MUTATED GTF3C4 WILD-TYPE 
              13              380 
  GTF3C4 MUTATED GTF3C4 WILD-TYPE 
              13              380 
[1] "PPP3CA MUTATION ANALYSIS"
[1] 3
  PPP3CA MUTATED PPP3CA WILD-TYPE 
              12              381 
  PPP3CA MUTATED PPP3CA WILD-TYPE 
              12              381 
[1] "NOB1 MUTATION ANALYSIS"
[1] 3
  NOB1 MUTATED NOB1 WILD-TYPE 
             7            386 
  NOB1 MUTATED NOB1 WILD-TYPE 
             7            386 
[1] "C15ORF52 MUTATION ANALYSIS"
[1] 3
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
                 6                387 
  C15ORF52 MUTATED C15ORF52 WILD-TYPE 
                 6                387 
[1] "MEN1 MUTATION ANALYSIS"
[1] 3
  MEN1 MUTATED MEN1 WILD-TYPE 
            10            383 
  MEN1 MUTATED MEN1 WILD-TYPE 
            10            383 
[1] "MAPK15 MUTATION ANALYSIS"
[1] 3
  MAPK15 MUTATED MAPK15 WILD-TYPE 
               8              385 
  MAPK15 MUTATED MAPK15 WILD-TYPE 
               8              385 
[1] "DDX50 MUTATION ANALYSIS"
[1] 3
  DDX50 MUTATED DDX50 WILD-TYPE 
             12             381 
  DDX50 MUTATED DDX50 WILD-TYPE 
             12             381 
[1] "ATP6V1H MUTATION ANALYSIS"
[1] 3
  ATP6V1H MUTATED ATP6V1H WILD-TYPE 
               13               380 
  ATP6V1H MUTATED ATP6V1H WILD-TYPE 
               13               380 
[1] "KIAA1609 MUTATION ANALYSIS"
[1] 3
  KIAA1609 MUTATED KIAA1609 WILD-TYPE 
                 8                385 
  KIAA1609 MUTATED KIAA1609 WILD-TYPE 
                 8                385 
[1] "ITPR2 MUTATION ANALYSIS"
[1] 3
  ITPR2 MUTATED ITPR2 WILD-TYPE 
             27             366 
  ITPR2 MUTATED ITPR2 WILD-TYPE 
             27             366 
[1] "NUP35 MUTATION ANALYSIS"
[1] 3
  NUP35 MUTATED NUP35 WILD-TYPE 
              6             387 
  NUP35 MUTATED NUP35 WILD-TYPE 
              6             387 
[1] "LIMCH1 MUTATION ANALYSIS"
[1] 3
  LIMCH1 MUTATED LIMCH1 WILD-TYPE 
              12              381 
  LIMCH1 MUTATED LIMCH1 WILD-TYPE 
              12              381 
[1] "NAGPA MUTATION ANALYSIS"
[1] 3
  NAGPA MUTATED NAGPA WILD-TYPE 
              7             386 
  NAGPA MUTATED NAGPA WILD-TYPE 
              7             386 
[1] "PDS5A MUTATION ANALYSIS"
[1] 3
  PDS5A MUTATED PDS5A WILD-TYPE 
             17             376 
  PDS5A MUTATED PDS5A WILD-TYPE 
             17             376 
[1] "CEP110 MUTATION ANALYSIS"
[1] 3
  CEP110 MUTATED CEP110 WILD-TYPE 
              15              378 
  CEP110 MUTATED CEP110 WILD-TYPE 
              15              378 
[1] "DPAGT1 MUTATION ANALYSIS"
[1] 3
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
               6              387 
  DPAGT1 MUTATED DPAGT1 WILD-TYPE 
               6              387 
[1] "KCNH4 MUTATION ANALYSIS"
[1] 3
  KCNH4 MUTATED KCNH4 WILD-TYPE 
             11             382 
  KCNH4 MUTATED KCNH4 WILD-TYPE 
             11             382 
[1] "TCF20 MUTATION ANALYSIS"
[1] 3
  TCF20 MUTATED TCF20 WILD-TYPE 
             17             376 
  TCF20 MUTATED TCF20 WILD-TYPE 
             17             376 
[1] "EPB41 MUTATION ANALYSIS"
[1] 3
  EPB41 MUTATED EPB41 WILD-TYPE 
             13             380 
  EPB41 MUTATED EPB41 WILD-TYPE 
             13             380 
[1] "ARSJ MUTATION ANALYSIS"
[1] 3
  ARSJ MUTATED ARSJ WILD-TYPE 
             6            387 
  ARSJ MUTATED ARSJ WILD-TYPE 
             6            387 
[1] "PNMT MUTATION ANALYSIS"
[1] 3
  PNMT MUTATED PNMT WILD-TYPE 
            11            382 
  PNMT MUTATED PNMT WILD-TYPE 
            11            382 
[1] "AP3M2 MUTATION ANALYSIS"
[1] 3
  AP3M2 MUTATED AP3M2 WILD-TYPE 
             12             381 
  AP3M2 MUTATED AP3M2 WILD-TYPE 
             12             381 
[1] "EHBP1 MUTATION ANALYSIS"
[1] 3
  EHBP1 MUTATED EHBP1 WILD-TYPE 
             14             379 
  EHBP1 MUTATED EHBP1 WILD-TYPE 
             14             379 
[1] "CRAT MUTATION ANALYSIS"
[1] 3
  CRAT MUTATED CRAT WILD-TYPE 
            12            381 
  CRAT MUTATED CRAT WILD-TYPE 
            12            381 
[1] "SMAP2 MUTATION ANALYSIS"
[1] 3
  SMAP2 MUTATED SMAP2 WILD-TYPE 
              5             388 
  SMAP2 MUTATED SMAP2 WILD-TYPE 
              5             388 
[1] "APITD1 MUTATION ANALYSIS"
[1] 3
  APITD1 MUTATED APITD1 WILD-TYPE 
               5              388 
  APITD1 MUTATED APITD1 WILD-TYPE 
               5              388 
[1] "KIFAP3 MUTATION ANALYSIS"
[1] 3
  KIFAP3 MUTATED KIFAP3 WILD-TYPE 
              14              379 
  KIFAP3 MUTATED KIFAP3 WILD-TYPE 
              14              379 
[1] "ELL2 MUTATION ANALYSIS"
[1] 3
  ELL2 MUTATED ELL2 WILD-TYPE 
            15            378 
  ELL2 MUTATED ELL2 WILD-TYPE 
            15            378 
[1] "CEP290 MUTATION ANALYSIS"
[1] 3
  CEP290 MUTATED CEP290 WILD-TYPE 
              14              379 
  CEP290 MUTATED CEP290 WILD-TYPE 
              14              379 
[1] "MBD2 MUTATION ANALYSIS"
[1] 3
  MBD2 MUTATED MBD2 WILD-TYPE 
             9            384 
  MBD2 MUTATED MBD2 WILD-TYPE 
             9            384 
[1] "DDX43 MUTATION ANALYSIS"
[1] 3
  DDX43 MUTATED DDX43 WILD-TYPE 
             13             380 
  DDX43 MUTATED DDX43 WILD-TYPE 
             13             380 
[1] "DDHD1 MUTATION ANALYSIS"
[1] 3
  DDHD1 MUTATED DDHD1 WILD-TYPE 
             13             380 
  DDHD1 MUTATED DDHD1 WILD-TYPE 
             13             380 
[1] "TMEM64 MUTATION ANALYSIS"
[1] 3
  TMEM64 MUTATED TMEM64 WILD-TYPE 
               7              386 
  TMEM64 MUTATED TMEM64 WILD-TYPE 
               7              386 
[1] "ECSIT MUTATION ANALYSIS"
[1] 3
  ECSIT MUTATED ECSIT WILD-TYPE 
              6             387 
  ECSIT MUTATED ECSIT WILD-TYPE 
              6             387 
[1] "KIAA1543 MUTATION ANALYSIS"
[1] 3
  KIAA1543 MUTATED KIAA1543 WILD-TYPE 
                17                376 
  KIAA1543 MUTATED KIAA1543 WILD-TYPE 
                17                376 
[1] "UPK2 MUTATION ANALYSIS"
[1] 3
  UPK2 MUTATED UPK2 WILD-TYPE 
             4            389 
  UPK2 MUTATED UPK2 WILD-TYPE 
             4            389 
[1] "IGFBP7 MUTATION ANALYSIS"
[1] 3
  IGFBP7 MUTATED IGFBP7 WILD-TYPE 
               4              389 
  IGFBP7 MUTATED IGFBP7 WILD-TYPE 
               4              389 
[1] "ARPC5L MUTATION ANALYSIS"
[1] 3
  ARPC5L MUTATED ARPC5L WILD-TYPE 
               3              390 
  ARPC5L MUTATED ARPC5L WILD-TYPE 
               3              390 
[1] "TEX13A MUTATION ANALYSIS"
[1] 3
  TEX13A MUTATED TEX13A WILD-TYPE 
               5              388 
  TEX13A MUTATED TEX13A WILD-TYPE 
               5              388 
[1] "KCNQ1 MUTATION ANALYSIS"
[1] 3
  KCNQ1 MUTATED KCNQ1 WILD-TYPE 
              6             387 
  KCNQ1 MUTATED KCNQ1 WILD-TYPE 
              6             387 
[1] "HAPLN1 MUTATION ANALYSIS"
[1] 3
  HAPLN1 MUTATED HAPLN1 WILD-TYPE 
               9              384 
  HAPLN1 MUTATED HAPLN1 WILD-TYPE 
               9              384 
[1] "AXIN1 MUTATION ANALYSIS"
[1] 3
  AXIN1 MUTATED AXIN1 WILD-TYPE 
             14             379 
  AXIN1 MUTATED AXIN1 WILD-TYPE 
             14             379 
[1] "AOC3 MUTATION ANALYSIS"
[1] 3
  AOC3 MUTATED AOC3 WILD-TYPE 
            11            382 
  AOC3 MUTATED AOC3 WILD-TYPE 
            11            382 
[1] "ANKRD23 MUTATION ANALYSIS"
[1] 3
  ANKRD23 MUTATED ANKRD23 WILD-TYPE 
                6               387 
  ANKRD23 MUTATED ANKRD23 WILD-TYPE 
                6               387 
[1] "SOHLH2 MUTATION ANALYSIS"
[1] 3
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
              17              376 
  SOHLH2 MUTATED SOHLH2 WILD-TYPE 
              17              376 
[1] "SLC26A7 MUTATION ANALYSIS"
[1] 3
  SLC26A7 MUTATED SLC26A7 WILD-TYPE 
               15               378 
  SLC26A7 MUTATED SLC26A7 WILD-TYPE 
               15               378 
[1] "RHOBTB2 MUTATION ANALYSIS"
[1] 3
  RHOBTB2 MUTATED RHOBTB2 WILD-TYPE 
               20               373 
  RHOBTB2 MUTATED RHOBTB2 WILD-TYPE 
               20               373 
[1] "DGKA MUTATION ANALYSIS"
[1] 3
  DGKA MUTATED DGKA WILD-TYPE 
             9            384 
  DGKA MUTATED DGKA WILD-TYPE 
             9            384 
[1] "KIAA1797 MUTATION ANALYSIS"
[1] 3
  KIAA1797 MUTATED KIAA1797 WILD-TYPE 
                19                374 
  KIAA1797 MUTATED KIAA1797 WILD-TYPE 
                19                374 
[1] "SERPINB10 MUTATION ANALYSIS"
[1] 3
  SERPINB10 MUTATED SERPINB10 WILD-TYPE 
                  8                 385 
  SERPINB10 MUTATED SERPINB10 WILD-TYPE 
                  8                 385 
[1] "SMCHD1 MUTATION ANALYSIS"
[1] 3
  SMCHD1 MUTATED SMCHD1 WILD-TYPE 
              14              379 
  SMCHD1 MUTATED SMCHD1 WILD-TYPE 
              14              379 
[1] "MOCS2 MUTATION ANALYSIS"
[1] 3
  MOCS2 MUTATED MOCS2 WILD-TYPE 
              5             388 
  MOCS2 MUTATED MOCS2 WILD-TYPE 
              5             388 
[1] "DGKD MUTATION ANALYSIS"
[1] 3
  DGKD MUTATED DGKD WILD-TYPE 
             6            387 
  DGKD MUTATED DGKD WILD-TYPE 
             6            387 
[1] "THEMIS MUTATION ANALYSIS"
[1] 3
  THEMIS MUTATED THEMIS WILD-TYPE 
              11              382 
  THEMIS MUTATED THEMIS WILD-TYPE 
              11              382 
[1] "BMPR2 MUTATION ANALYSIS"
[1] 3
  BMPR2 MUTATED BMPR2 WILD-TYPE 
             19             374 
  BMPR2 MUTATED BMPR2 WILD-TYPE 
             19             374 
[1] "R3HDM2 MUTATION ANALYSIS"
[1] 3
  R3HDM2 MUTATED R3HDM2 WILD-TYPE 
               9              384 
  R3HDM2 MUTATED R3HDM2 WILD-TYPE 
               9              384 
[1] "BLMH MUTATION ANALYSIS"
[1] 3
  BLMH MUTATED BLMH WILD-TYPE 
             5            388 
  BLMH MUTATED BLMH WILD-TYPE 
             5            388 
[1] "PLEKHO1 MUTATION ANALYSIS"
[1] 3
  PLEKHO1 MUTATED PLEKHO1 WILD-TYPE 
                7               386 
  PLEKHO1 MUTATED PLEKHO1 WILD-TYPE 
                7               386 
[1] "INPP5F MUTATION ANALYSIS"
[1] 3
  INPP5F MUTATED INPP5F WILD-TYPE 
              15              378 
  INPP5F MUTATED INPP5F WILD-TYPE 
              15              378 
[1] "NLRC5 MUTATION ANALYSIS"
[1] 3
  NLRC5 MUTATED NLRC5 WILD-TYPE 
             23             370 
  NLRC5 MUTATED NLRC5 WILD-TYPE 
             23             370 
[1] "MYCT1 MUTATION ANALYSIS"
[1] 3
  MYCT1 MUTATED MYCT1 WILD-TYPE 
              8             385 
  MYCT1 MUTATED MYCT1 WILD-TYPE 
              8             385 
[1] "CDC6 MUTATION ANALYSIS"
[1] 3
  CDC6 MUTATED CDC6 WILD-TYPE 
             8            385 
  CDC6 MUTATED CDC6 WILD-TYPE 
             8            385 
[1] "CDX2 MUTATION ANALYSIS"
[1] 3
  CDX2 MUTATED CDX2 WILD-TYPE 
             4            389 
  CDX2 MUTATED CDX2 WILD-TYPE 
             4            389 
[1] "EFHA1 MUTATION ANALYSIS"
[1] 3
  EFHA1 MUTATED EFHA1 WILD-TYPE 
             14             379 
  EFHA1 MUTATED EFHA1 WILD-TYPE 
             14             379 
[1] "GPR124 MUTATION ANALYSIS"
[1] 3
  GPR124 MUTATED GPR124 WILD-TYPE 
              17              376 
  GPR124 MUTATED GPR124 WILD-TYPE 
              17              376 
[1] "TEX15 MUTATION ANALYSIS"
[1] 3
  TEX15 MUTATED TEX15 WILD-TYPE 
             27             366 
  TEX15 MUTATED TEX15 WILD-TYPE 
             27             366 
[1] "CD33 MUTATION ANALYSIS"
[1] 3
  CD33 MUTATED CD33 WILD-TYPE 
             9            384 
  CD33 MUTATED CD33 WILD-TYPE 
             9            384 
[1] "GIPC3 MUTATION ANALYSIS"
[1] 3
  GIPC3 MUTATED GIPC3 WILD-TYPE 
              7             386 
  GIPC3 MUTATED GIPC3 WILD-TYPE 
              7             386 
[1] "PRAMEF14 MUTATION ANALYSIS"
[1] 3
  PRAMEF14 MUTATED PRAMEF14 WILD-TYPE 
                 5                388 
  PRAMEF14 MUTATED PRAMEF14 WILD-TYPE 
                 5                388 
[1] "PYGO2 MUTATION ANALYSIS"
[1] 3
  PYGO2 MUTATED PYGO2 WILD-TYPE 
              8             385 
  PYGO2 MUTATED PYGO2 WILD-TYPE 
              8             385 
[1] "AVEN MUTATION ANALYSIS"
[1] 3
  AVEN MUTATED AVEN WILD-TYPE 
             7            386 
  AVEN MUTATED AVEN WILD-TYPE 
             7            386 
[1] "BAT4 MUTATION ANALYSIS"
[1] 3
  BAT4 MUTATED BAT4 WILD-TYPE 
             5            388 
  BAT4 MUTATED BAT4 WILD-TYPE 
             5            388 
[1] "GPR1 MUTATION ANALYSIS"
[1] 3
  GPR1 MUTATED GPR1 WILD-TYPE 
             6            387 
  GPR1 MUTATED GPR1 WILD-TYPE 
             6            387 
[1] "KCTD9 MUTATION ANALYSIS"
[1] 3
  KCTD9 MUTATED KCTD9 WILD-TYPE 
             11             382 
  KCTD9 MUTATED KCTD9 WILD-TYPE 
             11             382 
[1] "ZNF514 MUTATION ANALYSIS"
[1] 3
  ZNF514 MUTATED ZNF514 WILD-TYPE 
               9              384 
  ZNF514 MUTATED ZNF514 WILD-TYPE 
               9              384 
[1] "AFP MUTATION ANALYSIS"
[1] 3
  AFP MUTATED AFP WILD-TYPE 
            4           389 
  AFP MUTATED AFP WILD-TYPE 
            4           389 
[1] "TRIOBP MUTATION ANALYSIS"
[1] 3
  TRIOBP MUTATED TRIOBP WILD-TYPE 
              30              363 
  TRIOBP MUTATED TRIOBP WILD-TYPE 
              30              363 
[1] "CCAR1 MUTATION ANALYSIS"
[1] 3
  CCAR1 MUTATED CCAR1 WILD-TYPE 
             19             374 
  CCAR1 MUTATED CCAR1 WILD-TYPE 
             19             374 
[1] "TMEM127 MUTATION ANALYSIS"
[1] 3
  TMEM127 MUTATED TMEM127 WILD-TYPE 
                5               388 
  TMEM127 MUTATED TMEM127 WILD-TYPE 
                5               388 
[1] "ZNF142 MUTATION ANALYSIS"
[1] 3
  ZNF142 MUTATED ZNF142 WILD-TYPE 
              19              374 
  ZNF142 MUTATED ZNF142 WILD-TYPE 
              19              374 
[1] "MRPS5 MUTATION ANALYSIS"
[1] 3
  MRPS5 MUTATED MRPS5 WILD-TYPE 
              7             386 
  MRPS5 MUTATED MRPS5 WILD-TYPE 
              7             386 
[1] "CEP250 MUTATION ANALYSIS"
[1] 3
  CEP250 MUTATED CEP250 WILD-TYPE 
              21              372 
  CEP250 MUTATED CEP250 WILD-TYPE 
              21              372 
[1] "ARMC4 MUTATION ANALYSIS"
[1] 3
  ARMC4 MUTATED ARMC4 WILD-TYPE 
             18             375 
  ARMC4 MUTATED ARMC4 WILD-TYPE 
             18             375 
[1] "PCF11 MUTATION ANALYSIS"
[1] 3
  PCF11 MUTATED PCF11 WILD-TYPE 
             22             371 
  PCF11 MUTATED PCF11 WILD-TYPE 
             22             371 
[1] "C2ORF76 MUTATION ANALYSIS"
[1] 3
  C2ORF76 MUTATED C2ORF76 WILD-TYPE 
                4               389 
  C2ORF76 MUTATED C2ORF76 WILD-TYPE 
                4               389 
[1] "MBNL2 MUTATION ANALYSIS"
[1] 3
  MBNL2 MUTATED MBNL2 WILD-TYPE 
             11             382 
  MBNL2 MUTATED MBNL2 WILD-TYPE 
             11             382 
[1] "ITGAE MUTATION ANALYSIS"
[1] 3
  ITGAE MUTATED ITGAE WILD-TYPE 
             15             378 
  ITGAE MUTATED ITGAE WILD-TYPE 
             15             378 
[1] "KIF6 MUTATION ANALYSIS"
[1] 3
  KIF6 MUTATED KIF6 WILD-TYPE 
            12            381 
  KIF6 MUTATED KIF6 WILD-TYPE 
            12            381 
[1] "TNFSF13 MUTATION ANALYSIS"
[1] 3
  TNFSF13 MUTATED TNFSF13 WILD-TYPE 
                3               390 
  TNFSF13 MUTATED TNFSF13 WILD-TYPE 
                3               390 
[1] "CASKIN2 MUTATION ANALYSIS"
[1] 3
  CASKIN2 MUTATED CASKIN2 WILD-TYPE 
               15               378 
  CASKIN2 MUTATED CASKIN2 WILD-TYPE 
               15               378 
[1] "ALPK1 MUTATION ANALYSIS"
[1] 3
  ALPK1 MUTATED ALPK1 WILD-TYPE 
             19             374 
  ALPK1 MUTATED ALPK1 WILD-TYPE 
             19             374 
[1] "SUCLG2 MUTATION ANALYSIS"
[1] 3
  SUCLG2 MUTATED SUCLG2 WILD-TYPE 
               7              386 
  SUCLG2 MUTATED SUCLG2 WILD-TYPE 
               7              386 
[1] "NOS1 MUTATION ANALYSIS"
[1] 3
  NOS1 MUTATED NOS1 WILD-TYPE 
            31            362 
  NOS1 MUTATED NOS1 WILD-TYPE 
            31            362 
[1] "SLA MUTATION ANALYSIS"
[1] 3
  SLA MUTATED SLA WILD-TYPE 
            6           387 
  SLA MUTATED SLA WILD-TYPE 
            6           387 
[1] "C9ORF98 MUTATION ANALYSIS"
[1] 3
  C9ORF98 MUTATED C9ORF98 WILD-TYPE 
               10               383 
  C9ORF98 MUTATED C9ORF98 WILD-TYPE 
               10               383 
[1] "TOPBP1 MUTATION ANALYSIS"
[1] 3
  TOPBP1 MUTATED TOPBP1 WILD-TYPE 
              16              377 
  TOPBP1 MUTATED TOPBP1 WILD-TYPE 
              16              377 
[1] "KCNH2 MUTATION ANALYSIS"
[1] 3
  KCNH2 MUTATED KCNH2 WILD-TYPE 
             14             379 
  KCNH2 MUTATED KCNH2 WILD-TYPE 
             14             379 
[1] "FAHD2A MUTATION ANALYSIS"
[1] 3
  FAHD2A MUTATED FAHD2A WILD-TYPE 
               8              385 
  FAHD2A MUTATED FAHD2A WILD-TYPE 
               8              385 
[1] "PTPN3 MUTATION ANALYSIS"
[1] 3
  PTPN3 MUTATED PTPN3 WILD-TYPE 
             15             378 
  PTPN3 MUTATED PTPN3 WILD-TYPE 
             15             378 
[1] "E2F5 MUTATION ANALYSIS"
[1] 3
  E2F5 MUTATED E2F5 WILD-TYPE 
             4            389 
  E2F5 MUTATED E2F5 WILD-TYPE 
             4            389 
[1] "PABPC4 MUTATION ANALYSIS"
[1] 3
  PABPC4 MUTATED PABPC4 WILD-TYPE 
               9              384 
  PABPC4 MUTATED PABPC4 WILD-TYPE 
               9              384 
[1] "ERV3 MUTATION ANALYSIS"
[1] 3
  ERV3 MUTATED ERV3 WILD-TYPE 
             5            388 
  ERV3 MUTATED ERV3 WILD-TYPE 
             5            388 
[1] "SLC39A8 MUTATION ANALYSIS"
[1] 3
  SLC39A8 MUTATED SLC39A8 WILD-TYPE 
                7               386 
  SLC39A8 MUTATED SLC39A8 WILD-TYPE 
                7               386 
[1] "RIMKLB MUTATION ANALYSIS"
[1] 3
  RIMKLB MUTATED RIMKLB WILD-TYPE 
              11              382 
  RIMKLB MUTATED RIMKLB WILD-TYPE 
              11              382 
[1] "UGT1A4 MUTATION ANALYSIS"
[1] 3
  UGT1A4 MUTATED UGT1A4 WILD-TYPE 
              10              383 
  UGT1A4 MUTATED UGT1A4 WILD-TYPE 
              10              383 
[1] "PLA2G15 MUTATION ANALYSIS"
[1] 3
  PLA2G15 MUTATED PLA2G15 WILD-TYPE 
               10               383 
  PLA2G15 MUTATED PLA2G15 WILD-TYPE 
               10               383 
[1] "MNS1 MUTATION ANALYSIS"
[1] 3
  MNS1 MUTATED MNS1 WILD-TYPE 
             8            385 
  MNS1 MUTATED MNS1 WILD-TYPE 
             8            385 
[1] "ZNF800 MUTATION ANALYSIS"
[1] 3
  ZNF800 MUTATED ZNF800 WILD-TYPE 
              12              381 
  ZNF800 MUTATED ZNF800 WILD-TYPE 
              12              381 
[1] "PHACTR2 MUTATION ANALYSIS"
[1] 3
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
               15               378 
  PHACTR2 MUTATED PHACTR2 WILD-TYPE 
               15               378 
[1] "PLK2 MUTATION ANALYSIS"
[1] 3
  PLK2 MUTATED PLK2 WILD-TYPE 
             8            385 
  PLK2 MUTATED PLK2 WILD-TYPE 
             8            385 
[1] "SERPINB7 MUTATION ANALYSIS"
[1] 3
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 6                387 
  SERPINB7 MUTATED SERPINB7 WILD-TYPE 
                 6                387 
[1] "ZNF295 MUTATION ANALYSIS"
[1] 3
  ZNF295 MUTATED ZNF295 WILD-TYPE 
              18              375 
  ZNF295 MUTATED ZNF295 WILD-TYPE 
              18              375 
[1] "RINT1 MUTATION ANALYSIS"
[1] 3
  RINT1 MUTATED RINT1 WILD-TYPE 
              7             386 
  RINT1 MUTATED RINT1 WILD-TYPE 
              7             386 
[1] "PDS5B MUTATION ANALYSIS"
[1] 3
  PDS5B MUTATED PDS5B WILD-TYPE 
             19             374 
  PDS5B MUTATED PDS5B WILD-TYPE 
             19             374 
[1] "YBX2 MUTATION ANALYSIS"
[1] 3
  YBX2 MUTATED YBX2 WILD-TYPE 
             6            387 
  YBX2 MUTATED YBX2 WILD-TYPE 
             6            387 
[1] "CNOT6 MUTATION ANALYSIS"
[1] 3
  CNOT6 MUTATED CNOT6 WILD-TYPE 
              8             385 
  CNOT6 MUTATED CNOT6 WILD-TYPE 
              8             385 
[1] "ESRP1 MUTATION ANALYSIS"
[1] 3
  ESRP1 MUTATED ESRP1 WILD-TYPE 
              9             384 
  ESRP1 MUTATED ESRP1 WILD-TYPE 
              9             384 
[1] "LCE1A MUTATION ANALYSIS"
[1] 3
  LCE1A MUTATED LCE1A WILD-TYPE 
              4             389 
  LCE1A MUTATED LCE1A WILD-TYPE 
              4             389 
[1] "PPARGC1B MUTATION ANALYSIS"
[1] 3
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
                10                383 
  PPARGC1B MUTATED PPARGC1B WILD-TYPE 
                10                383 
[1] "MRPL24 MUTATION ANALYSIS"
[1] 3
  MRPL24 MUTATED MRPL24 WILD-TYPE 
               6              387 
  MRPL24 MUTATED MRPL24 WILD-TYPE 
               6              387 
[1] "F8 MUTATION ANALYSIS"
[1] 3
  F8 MUTATED F8 WILD-TYPE 
          30          363 
  F8 MUTATED F8 WILD-TYPE 
          30          363 
[1] "GOLT1B MUTATION ANALYSIS"
[1] 3
  GOLT1B MUTATED GOLT1B WILD-TYPE 
               5              388 
  GOLT1B MUTATED GOLT1B WILD-TYPE 
               5              388 
[1] "HOOK1 MUTATION ANALYSIS"
[1] 3
  HOOK1 MUTATED HOOK1 WILD-TYPE 
              7             386 
  HOOK1 MUTATED HOOK1 WILD-TYPE 
              7             386 
[1] "ARHGEF5 MUTATION ANALYSIS"
[1] 3
  ARHGEF5 MUTATED ARHGEF5 WILD-TYPE 
                7               386 
  ARHGEF5 MUTATED ARHGEF5 WILD-TYPE 
                7               386 
[1] "CIB3 MUTATION ANALYSIS"
[1] 3
  CIB3 MUTATED CIB3 WILD-TYPE 
             5            388 
  CIB3 MUTATED CIB3 WILD-TYPE 
             5            388 
[1] "TBL1XR1 MUTATION ANALYSIS"
[1] 3
  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE 
                8               385 
  TBL1XR1 MUTATED TBL1XR1 WILD-TYPE 
                8               385 
[1] "WHSC1L1 MUTATION ANALYSIS"
[1] 3
  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE 
               18               375 
  WHSC1L1 MUTATED WHSC1L1 WILD-TYPE 
               18               375 
[1] "C1ORF14 MUTATION ANALYSIS"
[1] 3
  C1ORF14 MUTATED C1ORF14 WILD-TYPE 
               14               379 
  C1ORF14 MUTATED C1ORF14 WILD-TYPE 
               14               379 
[1] "CUL1 MUTATION ANALYSIS"
[1] 3
  CUL1 MUTATED CUL1 WILD-TYPE 
            20            373 
  CUL1 MUTATED CUL1 WILD-TYPE 
            20            373 
[1] "C9ORF46 MUTATION ANALYSIS"
[1] 3
  C9ORF46 MUTATED C9ORF46 WILD-TYPE 
                4               389 
  C9ORF46 MUTATED C9ORF46 WILD-TYPE 
                4               389 
[1] "VPRBP MUTATION ANALYSIS"
[1] 3
  VPRBP MUTATED VPRBP WILD-TYPE 
              8             385 
  VPRBP MUTATED VPRBP WILD-TYPE 
              8             385 
[1] "INO80D MUTATION ANALYSIS"
[1] 3
  INO80D MUTATED INO80D WILD-TYPE 
              16              377 
  INO80D MUTATED INO80D WILD-TYPE 
              16              377 
[1] "B4GALNT4 MUTATION ANALYSIS"
[1] 3
  B4GALNT4 MUTATED B4GALNT4 WILD-TYPE 
                18                375 
  B4GALNT4 MUTATED B4GALNT4 WILD-TYPE 
                18                375 
[1] "PTX4 MUTATION ANALYSIS"
[1] 3
  PTX4 MUTATED PTX4 WILD-TYPE 
            12            381 
  PTX4 MUTATED PTX4 WILD-TYPE 
            12            381 
[1] "ARHGEF17 MUTATION ANALYSIS"
[1] 3
  ARHGEF17 MUTATED ARHGEF17 WILD-TYPE 
                22                371 
  ARHGEF17 MUTATED ARHGEF17 WILD-TYPE 
                22                371 
[1] "GPR137B MUTATION ANALYSIS"
[1] 3
  GPR137B MUTATED GPR137B WILD-TYPE 
                6               387 
  GPR137B MUTATED GPR137B WILD-TYPE 
                6               387 
[1] "FAM109B MUTATION ANALYSIS"
[1] 3
  FAM109B MUTATED FAM109B WILD-TYPE 
                7               386 
  FAM109B MUTATED FAM109B WILD-TYPE 
                7               386 
[1] "HGF MUTATION ANALYSIS"
[1] 3
  HGF MUTATED HGF WILD-TYPE 
           18           375 
  HGF MUTATED HGF WILD-TYPE 
           18           375 
[1] "GPR114 MUTATION ANALYSIS"
[1] 3
  GPR114 MUTATED GPR114 WILD-TYPE 
               9              384 
  GPR114 MUTATED GPR114 WILD-TYPE 
               9              384 
[1] "DHRS9 MUTATION ANALYSIS"
[1] 3
  DHRS9 MUTATED DHRS9 WILD-TYPE 
              9             384 
  DHRS9 MUTATED DHRS9 WILD-TYPE 
              9             384 
[1] "RGS12 MUTATION ANALYSIS"
[1] 3
  RGS12 MUTATED RGS12 WILD-TYPE 
             30             363 
  RGS12 MUTATED RGS12 WILD-TYPE 
             30             363 
[1] "TRIP10 MUTATION ANALYSIS"
[1] 3
  TRIP10 MUTATED TRIP10 WILD-TYPE 
               9              384 
  TRIP10 MUTATED TRIP10 WILD-TYPE 
               9              384 
[1] "BTBD12 MUTATION ANALYSIS"
[1] 3
  BTBD12 MUTATED BTBD12 WILD-TYPE 
              25              368 
  BTBD12 MUTATED BTBD12 WILD-TYPE 
              25              368 
[1] "WAPAL MUTATION ANALYSIS"
[1] 3
  WAPAL MUTATED WAPAL WILD-TYPE 
             16             377 
  WAPAL MUTATED WAPAL WILD-TYPE 
             16             377 
[1] "CAB39L MUTATION ANALYSIS"
[1] 3
  CAB39L MUTATED CAB39L WILD-TYPE 
               7              386 
  CAB39L MUTATED CAB39L WILD-TYPE 
               7              386 
[1] "ZCCHC2 MUTATION ANALYSIS"
[1] 3
  ZCCHC2 MUTATED ZCCHC2 WILD-TYPE 
               6              387 
  ZCCHC2 MUTATED ZCCHC2 WILD-TYPE 
               6              387 
[1] "WDR90 MUTATION ANALYSIS"
[1] 3
  WDR90 MUTATED WDR90 WILD-TYPE 
             20             373 
  WDR90 MUTATED WDR90 WILD-TYPE 
             20             373 
[1] "UGT2A3 MUTATION ANALYSIS"
[1] 3
  UGT2A3 MUTATED UGT2A3 WILD-TYPE 
               7              386 
  UGT2A3 MUTATED UGT2A3 WILD-TYPE 
               7              386 
[1] "BRF1 MUTATION ANALYSIS"
[1] 3
  BRF1 MUTATED BRF1 WILD-TYPE 
            11            382 
  BRF1 MUTATED BRF1 WILD-TYPE 
            11            382 
[1] "PLK1 MUTATION ANALYSIS"
[1] 3
  PLK1 MUTATED PLK1 WILD-TYPE 
            16            377 
  PLK1 MUTATED PLK1 WILD-TYPE 
            16            377 
[1] "DUSP9 MUTATION ANALYSIS"
[1] 3
  DUSP9 MUTATED DUSP9 WILD-TYPE 
              8             385 
  DUSP9 MUTATED DUSP9 WILD-TYPE 
              8             385 
[1] "KIAA0427 MUTATION ANALYSIS"
[1] 3
  KIAA0427 MUTATED KIAA0427 WILD-TYPE 
                16                377 
  KIAA0427 MUTATED KIAA0427 WILD-TYPE 
                16                377 
[1] "UBXN6 MUTATION ANALYSIS"
[1] 3
  UBXN6 MUTATED UBXN6 WILD-TYPE 
             12             381 
  UBXN6 MUTATED UBXN6 WILD-TYPE 
             12             381 
[1] "EEF2K MUTATION ANALYSIS"
[1] 3
  EEF2K MUTATED EEF2K WILD-TYPE 
             10             383 
  EEF2K MUTATED EEF2K WILD-TYPE 
             10             383 
[1] "PYHIN1 MUTATION ANALYSIS"
[1] 3
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
              11              382 
  PYHIN1 MUTATED PYHIN1 WILD-TYPE 
              11              382 
[1] "C9ORF25 MUTATION ANALYSIS"
[1] 3
  C9ORF25 MUTATED C9ORF25 WILD-TYPE 
                5               388 
  C9ORF25 MUTATED C9ORF25 WILD-TYPE 
                5               388 
[1] "CD58 MUTATION ANALYSIS"
[1] 3
  CD58 MUTATED CD58 WILD-TYPE 
             7            386 
  CD58 MUTATED CD58 WILD-TYPE 
             7            386 
[1] "C20ORF7 MUTATION ANALYSIS"
[1] 3
  C20ORF7 MUTATED C20ORF7 WILD-TYPE 
                6               387 
  C20ORF7 MUTATED C20ORF7 WILD-TYPE 
                6               387 
[1] "POLE3 MUTATION ANALYSIS"
[1] 3
  POLE3 MUTATED POLE3 WILD-TYPE 
              3             390 
  POLE3 MUTATED POLE3 WILD-TYPE 
              3             390 
[1] "CHMP7 MUTATION ANALYSIS"
[1] 3
  CHMP7 MUTATED CHMP7 WILD-TYPE 
              5             388 
  CHMP7 MUTATED CHMP7 WILD-TYPE 
              5             388 
[1] "AMELX MUTATION ANALYSIS"
[1] 3
  AMELX MUTATED AMELX WILD-TYPE 
              5             388 
  AMELX MUTATED AMELX WILD-TYPE 
              5             388 
[1] "NEK8 MUTATION ANALYSIS"
[1] 3
  NEK8 MUTATED NEK8 WILD-TYPE 
            11            382 
  NEK8 MUTATED NEK8 WILD-TYPE 
            11            382 
[1] "POMGNT1 MUTATION ANALYSIS"
[1] 3
  POMGNT1 MUTATED POMGNT1 WILD-TYPE 
               10               383 
  POMGNT1 MUTATED POMGNT1 WILD-TYPE 
               10               383 
[1] "ATP2B4 MUTATION ANALYSIS"
[1] 3
  ATP2B4 MUTATED ATP2B4 WILD-TYPE 
              15              378 
  ATP2B4 MUTATED ATP2B4 WILD-TYPE 
              15              378 
[1] "KIAA1539 MUTATION ANALYSIS"
[1] 3
  KIAA1539 MUTATED KIAA1539 WILD-TYPE 
                10                383 
  KIAA1539 MUTATED KIAA1539 WILD-TYPE 
                10                383 
[1] "SEZ6 MUTATION ANALYSIS"
[1] 3
  SEZ6 MUTATED SEZ6 WILD-TYPE 
            13            380 
  SEZ6 MUTATED SEZ6 WILD-TYPE 
            13            380 
[1] "NARG2 MUTATION ANALYSIS"
[1] 3
  NARG2 MUTATED NARG2 WILD-TYPE 
             13             380 
  NARG2 MUTATED NARG2 WILD-TYPE 
             13             380 
[1] "CHD3 MUTATION ANALYSIS"
[1] 3
  CHD3 MUTATED CHD3 WILD-TYPE 
            28            365 
  CHD3 MUTATED CHD3 WILD-TYPE 
            28            365 
[1] "THSD1 MUTATION ANALYSIS"
[1] 3
  THSD1 MUTATED THSD1 WILD-TYPE 
             22             371 
  THSD1 MUTATED THSD1 WILD-TYPE 
             22             371 
[1] "CTNNA1 MUTATION ANALYSIS"
[1] 3
  CTNNA1 MUTATED CTNNA1 WILD-TYPE 
              15              378 
  CTNNA1 MUTATED CTNNA1 WILD-TYPE 
              15              378 
[1] "BANK1 MUTATION ANALYSIS"
[1] 3
  BANK1 MUTATED BANK1 WILD-TYPE 
             11             382 
  BANK1 MUTATED BANK1 WILD-TYPE 
             11             382 
[1] "ZNF441 MUTATION ANALYSIS"
[1] 3
  ZNF441 MUTATED ZNF441 WILD-TYPE 
               9              384 
  ZNF441 MUTATED ZNF441 WILD-TYPE 
               9              384 
[1] "TBC1D8B MUTATION ANALYSIS"
[1] 3
  TBC1D8B MUTATED TBC1D8B WILD-TYPE 
                9               384 
  TBC1D8B MUTATED TBC1D8B WILD-TYPE 
                9               384 
[1] "CD3EAP MUTATION ANALYSIS"
[1] 3
  CD3EAP MUTATED CD3EAP WILD-TYPE 
              10              383 
  CD3EAP MUTATED CD3EAP WILD-TYPE 
              10              383 
[1] "EFNA4 MUTATION ANALYSIS"
[1] 3
  EFNA4 MUTATED EFNA4 WILD-TYPE 
              5             388 
  EFNA4 MUTATED EFNA4 WILD-TYPE 
              5             388 
[1] "COL20A1 MUTATION ANALYSIS"
[1] 3
  COL20A1 MUTATED COL20A1 WILD-TYPE 
               20               373 
  COL20A1 MUTATED COL20A1 WILD-TYPE 
               20               373 
[1] "SEC16B MUTATION ANALYSIS"
[1] 3
  SEC16B MUTATED SEC16B WILD-TYPE 
               7              386 
  SEC16B MUTATED SEC16B WILD-TYPE 
               7              386 
[1] "SIX3 MUTATION ANALYSIS"
[1] 3
  SIX3 MUTATED SIX3 WILD-TYPE 
            10            383 
  SIX3 MUTATED SIX3 WILD-TYPE 
            10            383 
[1] "SLC7A13 MUTATION ANALYSIS"
[1] 3
  SLC7A13 MUTATED SLC7A13 WILD-TYPE 
               11               382 
  SLC7A13 MUTATED SLC7A13 WILD-TYPE 
               11               382 
[1] "EMILIN3 MUTATION ANALYSIS"
[1] 3
  EMILIN3 MUTATED EMILIN3 WILD-TYPE 
               14               379 
  EMILIN3 MUTATED EMILIN3 WILD-TYPE 
               14               379 
[1] "EPB41L5 MUTATION ANALYSIS"
[1] 3
  EPB41L5 MUTATED EPB41L5 WILD-TYPE 
               10               383 
  EPB41L5 MUTATED EPB41L5 WILD-TYPE 
               10               383 
[1] "UTY MUTATION ANALYSIS"
[1] 3
  UTY MUTATED UTY WILD-TYPE 
            3           390 
  UTY MUTATED UTY WILD-TYPE 
            3           390 
[1] "CCT6A MUTATION ANALYSIS"
[1] 3
  CCT6A MUTATED CCT6A WILD-TYPE 
              8             385 
  CCT6A MUTATED CCT6A WILD-TYPE 
              8             385 
[1] "DGAT1 MUTATION ANALYSIS"
[1] 3
  DGAT1 MUTATED DGAT1 WILD-TYPE 
              9             384 
  DGAT1 MUTATED DGAT1 WILD-TYPE 
              9             384 
[1] "VWA1 MUTATION ANALYSIS"
[1] 3
  VWA1 MUTATED VWA1 WILD-TYPE 
             7            386 
  VWA1 MUTATED VWA1 WILD-TYPE 
             7            386 
[1] "ABCA5 MUTATION ANALYSIS"
[1] 3
  ABCA5 MUTATED ABCA5 WILD-TYPE 
             21             372 
  ABCA5 MUTATED ABCA5 WILD-TYPE 
             21             372 
[1] "LONRF1 MUTATION ANALYSIS"
[1] 3
  LONRF1 MUTATED LONRF1 WILD-TYPE 
               6              387 
  LONRF1 MUTATED LONRF1 WILD-TYPE 
               6              387 
[1] "PHF10 MUTATION ANALYSIS"
[1] 3
  PHF10 MUTATED PHF10 WILD-TYPE 
              4             389 
  PHF10 MUTATED PHF10 WILD-TYPE 
              4             389 
[1] "CYP4B1 MUTATION ANALYSIS"
[1] 3
  CYP4B1 MUTATED CYP4B1 WILD-TYPE 
              10              383 
  CYP4B1 MUTATED CYP4B1 WILD-TYPE 
              10              383 
[1] "EXO1 MUTATION ANALYSIS"
[1] 3
  EXO1 MUTATED EXO1 WILD-TYPE 
            17            376 
  EXO1 MUTATED EXO1 WILD-TYPE 
            17            376 
[1] "THYN1 MUTATION ANALYSIS"
[1] 3
  THYN1 MUTATED THYN1 WILD-TYPE 
              8             385 
  THYN1 MUTATED THYN1 WILD-TYPE 
              8             385 
[1] "FOXQ1 MUTATION ANALYSIS"
[1] 3
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              3             390 
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              3             390 
[1] "HIVEP1 MUTATION ANALYSIS"
[1] 3
  HIVEP1 MUTATED HIVEP1 WILD-TYPE 
              24              369 
  HIVEP1 MUTATED HIVEP1 WILD-TYPE 
              24              369 
[1] "ZNF687 MUTATION ANALYSIS"
[1] 3
  ZNF687 MUTATED ZNF687 WILD-TYPE 
              11              382 
  ZNF687 MUTATED ZNF687 WILD-TYPE 
              11              382 
[1] "PTPN23 MUTATION ANALYSIS"
[1] 3
  PTPN23 MUTATED PTPN23 WILD-TYPE 
              21              372 
  PTPN23 MUTATED PTPN23 WILD-TYPE 
              21              372 
[1] "ADAM7 MUTATION ANALYSIS"
[1] 3
  ADAM7 MUTATED ADAM7 WILD-TYPE 
             16             377 
  ADAM7 MUTATED ADAM7 WILD-TYPE 
             16             377 
[1] "NOP2 MUTATION ANALYSIS"
[1] 3
  NOP2 MUTATED NOP2 WILD-TYPE 
             8            385 
  NOP2 MUTATED NOP2 WILD-TYPE 
             8            385 
[1] "FAM26E MUTATION ANALYSIS"
[1] 3
  FAM26E MUTATED FAM26E WILD-TYPE 
               3              390 
  FAM26E MUTATED FAM26E WILD-TYPE 
               3              390 
[1] "OTX2 MUTATION ANALYSIS"
[1] 3
  OTX2 MUTATED OTX2 WILD-TYPE 
             9            384 
  OTX2 MUTATED OTX2 WILD-TYPE 
             9            384 
[1] "TMEM116 MUTATION ANALYSIS"
[1] 3
  TMEM116 MUTATED TMEM116 WILD-TYPE 
                3               390 
  TMEM116 MUTATED TMEM116 WILD-TYPE 
                3               390 
[1] "IRS4 MUTATION ANALYSIS"
[1] 3
  IRS4 MUTATED IRS4 WILD-TYPE 
            24            369 
  IRS4 MUTATED IRS4 WILD-TYPE 
            24            369 
[1] "C9ORF152 MUTATION ANALYSIS"
[1] 3
  C9ORF152 MUTATED C9ORF152 WILD-TYPE 
                 3                390 
  C9ORF152 MUTATED C9ORF152 WILD-TYPE 
                 3                390 
[1] "YIF1A MUTATION ANALYSIS"
[1] 3
  YIF1A MUTATED YIF1A WILD-TYPE 
              5             388 
  YIF1A MUTATED YIF1A WILD-TYPE 
              5             388 
[1] "RUSC1 MUTATION ANALYSIS"
[1] 3
  RUSC1 MUTATED RUSC1 WILD-TYPE 
             19             374 
  RUSC1 MUTATED RUSC1 WILD-TYPE 
             19             374 
[1] "CNTLN MUTATION ANALYSIS"
[1] 3
  CNTLN MUTATED CNTLN WILD-TYPE 
             36             357 
  CNTLN MUTATED CNTLN WILD-TYPE 
             36             357 
[1] "NUAK1 MUTATION ANALYSIS"
[1] 3
  NUAK1 MUTATED NUAK1 WILD-TYPE 
             18             375 
  NUAK1 MUTATED NUAK1 WILD-TYPE 
             18             375 
[1] "GCG MUTATION ANALYSIS"
[1] 3
  GCG MUTATED GCG WILD-TYPE 
            7           386 
  GCG MUTATED GCG WILD-TYPE 
            7           386 
[1] "VPS4B MUTATION ANALYSIS"
[1] 3
  VPS4B MUTATED VPS4B WILD-TYPE 
              8             385 
  VPS4B MUTATED VPS4B WILD-TYPE 
              8             385 
[1] "C12ORF40 MUTATION ANALYSIS"
[1] 3
  C12ORF40 MUTATED C12ORF40 WILD-TYPE 
                 7                386 
  C12ORF40 MUTATED C12ORF40 WILD-TYPE 
                 7                386 
[1] "NHSL2 MUTATION ANALYSIS"
[1] 3
  NHSL2 MUTATED NHSL2 WILD-TYPE 
              6             387 
  NHSL2 MUTATED NHSL2 WILD-TYPE 
              6             387 
[1] "MYO9B MUTATION ANALYSIS"
[1] 3
  MYO9B MUTATED MYO9B WILD-TYPE 
             20             373 
  MYO9B MUTATED MYO9B WILD-TYPE 
             20             373 
[1] "PCLO MUTATION ANALYSIS"
[1] 3
  PCLO MUTATED PCLO WILD-TYPE 
            80            313 
  PCLO MUTATED PCLO WILD-TYPE 
            80            313 
[1] "KCNK13 MUTATION ANALYSIS"
[1] 3
  KCNK13 MUTATED KCNK13 WILD-TYPE 
              11              382 
  KCNK13 MUTATED KCNK13 WILD-TYPE 
              11              382 
[1] "SHMT2 MUTATION ANALYSIS"
[1] 3
  SHMT2 MUTATED SHMT2 WILD-TYPE 
             10             383 
  SHMT2 MUTATED SHMT2 WILD-TYPE 
             10             383 
[1] "TBC1D22B MUTATION ANALYSIS"
[1] 3
  TBC1D22B MUTATED TBC1D22B WILD-TYPE 
                 7                386 
  TBC1D22B MUTATED TBC1D22B WILD-TYPE 
                 7                386 
[1] "TACC2 MUTATION ANALYSIS"
[1] 3
  TACC2 MUTATED TACC2 WILD-TYPE 
             33             360 
  TACC2 MUTATED TACC2 WILD-TYPE 
             33             360 
[1] "EXOC3L2 MUTATION ANALYSIS"
[1] 3
  EXOC3L2 MUTATED EXOC3L2 WILD-TYPE 
                3               390 
  EXOC3L2 MUTATED EXOC3L2 WILD-TYPE 
                3               390 
[1] "BAG4 MUTATION ANALYSIS"
[1] 3
  BAG4 MUTATED BAG4 WILD-TYPE 
             5            388 
  BAG4 MUTATED BAG4 WILD-TYPE 
             5            388 
[1] "SLC26A8 MUTATION ANALYSIS"
[1] 3
  SLC26A8 MUTATED SLC26A8 WILD-TYPE 
               10               383 
  SLC26A8 MUTATED SLC26A8 WILD-TYPE 
               10               383 
[1] "MBOAT2 MUTATION ANALYSIS"
[1] 3
  MBOAT2 MUTATED MBOAT2 WILD-TYPE 
               3              390 
  MBOAT2 MUTATED MBOAT2 WILD-TYPE 
               3              390 
[1] "GIMAP7 MUTATION ANALYSIS"
[1] 3
  GIMAP7 MUTATED GIMAP7 WILD-TYPE 
               5              388 
  GIMAP7 MUTATED GIMAP7 WILD-TYPE 
               5              388 
[1] "C2CD3 MUTATION ANALYSIS"
[1] 3
  C2CD3 MUTATED C2CD3 WILD-TYPE 
             23             370 
  C2CD3 MUTATED C2CD3 WILD-TYPE 
             23             370 
[1] "TAF1D MUTATION ANALYSIS"
[1] 3
  TAF1D MUTATED TAF1D WILD-TYPE 
              7             386 
  TAF1D MUTATED TAF1D WILD-TYPE 
              7             386 
[1] "CEP120 MUTATION ANALYSIS"
[1] 3
  CEP120 MUTATED CEP120 WILD-TYPE 
              12              381 
  CEP120 MUTATED CEP120 WILD-TYPE 
              12              381 
[1] "OR2M5 MUTATION ANALYSIS"
[1] 3
  OR2M5 MUTATED OR2M5 WILD-TYPE 
             15             378 
  OR2M5 MUTATED OR2M5 WILD-TYPE 
             15             378 
[1] "ANKMY2 MUTATION ANALYSIS"
[1] 3
  ANKMY2 MUTATED ANKMY2 WILD-TYPE 
               4              389 
  ANKMY2 MUTATED ANKMY2 WILD-TYPE 
               4              389 
[1] "TYRO3 MUTATION ANALYSIS"
[1] 3
  TYRO3 MUTATED TYRO3 WILD-TYPE 
             11             382 
  TYRO3 MUTATED TYRO3 WILD-TYPE 
             11             382 
[1] "VASH1 MUTATION ANALYSIS"
[1] 3
  VASH1 MUTATED VASH1 WILD-TYPE 
              7             386 
  VASH1 MUTATED VASH1 WILD-TYPE 
              7             386 
[1] "MCM4 MUTATION ANALYSIS"
[1] 3
  MCM4 MUTATED MCM4 WILD-TYPE 
            15            378 
  MCM4 MUTATED MCM4 WILD-TYPE 
            15            378 
[1] "PPP1R12C MUTATION ANALYSIS"
[1] 3
  PPP1R12C MUTATED PPP1R12C WILD-TYPE 
                 9                384 
  PPP1R12C MUTATED PPP1R12C WILD-TYPE 
                 9                384 
[1] "PRB1 MUTATION ANALYSIS"
[1] 3
  PRB1 MUTATED PRB1 WILD-TYPE 
             3            390 
  PRB1 MUTATED PRB1 WILD-TYPE 
             3            390 
[1] "TPD52L1 MUTATION ANALYSIS"
[1] 3
  TPD52L1 MUTATED TPD52L1 WILD-TYPE 
               10               383 
  TPD52L1 MUTATED TPD52L1 WILD-TYPE 
               10               383 
[1] "IGFALS MUTATION ANALYSIS"
[1] 3
  IGFALS MUTATED IGFALS WILD-TYPE 
               9              384 
  IGFALS MUTATED IGFALS WILD-TYPE 
               9              384 
[1] "PAPOLB MUTATION ANALYSIS"
[1] 3
  PAPOLB MUTATED PAPOLB WILD-TYPE 
              14              379 
  PAPOLB MUTATED PAPOLB WILD-TYPE 
              14              379 
[1] "SMAD2 MUTATION ANALYSIS"
[1] 3
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              9             384 
  SMAD2 MUTATED SMAD2 WILD-TYPE 
              9             384 
[1] "ZMYND19 MUTATION ANALYSIS"
[1] 3
  ZMYND19 MUTATED ZMYND19 WILD-TYPE 
                8               385 
  ZMYND19 MUTATED ZMYND19 WILD-TYPE 
                8               385 
[1] "UBE2Q1 MUTATION ANALYSIS"
[1] 3
  UBE2Q1 MUTATED UBE2Q1 WILD-TYPE 
               7              386 
  UBE2Q1 MUTATED UBE2Q1 WILD-TYPE 
               7              386 
[1] "RYR2 MUTATION ANALYSIS"
[1] 3
  RYR2 MUTATED RYR2 WILD-TYPE 
            77            316 
  RYR2 MUTATED RYR2 WILD-TYPE 
            77            316 
[1] "STAU1 MUTATION ANALYSIS"
[1] 3
  STAU1 MUTATED STAU1 WILD-TYPE 
             10             383 
  STAU1 MUTATED STAU1 WILD-TYPE 
             10             383 
[1] "DLL1 MUTATION ANALYSIS"
[1] 3
  DLL1 MUTATED DLL1 WILD-TYPE 
            15            378 
  DLL1 MUTATED DLL1 WILD-TYPE 
            15            378 
[1] "E2F7 MUTATION ANALYSIS"
[1] 3
  E2F7 MUTATED E2F7 WILD-TYPE 
            20            373 
  E2F7 MUTATED E2F7 WILD-TYPE 
            20            373 
[1] "MYOCD MUTATION ANALYSIS"
[1] 3
  MYOCD MUTATED MYOCD WILD-TYPE 
             17             376 
  MYOCD MUTATED MYOCD WILD-TYPE 
             17             376 
[1] "EVI2B MUTATION ANALYSIS"
[1] 3
  EVI2B MUTATED EVI2B WILD-TYPE 
              9             384 
  EVI2B MUTATED EVI2B WILD-TYPE 
              9             384 
[1] "NRIP3 MUTATION ANALYSIS"
[1] 3
  NRIP3 MUTATED NRIP3 WILD-TYPE 
              7             386 
  NRIP3 MUTATED NRIP3 WILD-TYPE 
              7             386 
[1] "ABCA7 MUTATION ANALYSIS"
[1] 3
  ABCA7 MUTATED ABCA7 WILD-TYPE 
             20             373 
  ABCA7 MUTATED ABCA7 WILD-TYPE 
             20             373 
[1] "CWF19L2 MUTATION ANALYSIS"
[1] 3
  CWF19L2 MUTATED CWF19L2 WILD-TYPE 
               14               379 
  CWF19L2 MUTATED CWF19L2 WILD-TYPE 
               14               379 
[1] "FIBP MUTATION ANALYSIS"
[1] 3
  FIBP MUTATED FIBP WILD-TYPE 
            11            382 
  FIBP MUTATED FIBP WILD-TYPE 
            11            382 
[1] "PLEKHH3 MUTATION ANALYSIS"
[1] 3
  PLEKHH3 MUTATED PLEKHH3 WILD-TYPE 
               10               383 
  PLEKHH3 MUTATED PLEKHH3 WILD-TYPE 
               10               383 
[1] "MAP7D2 MUTATION ANALYSIS"
[1] 3
  MAP7D2 MUTATED MAP7D2 WILD-TYPE 
               5              388 
  MAP7D2 MUTATED MAP7D2 WILD-TYPE 
               5              388 
[1] "ZDHHC7 MUTATION ANALYSIS"
[1] 3
  ZDHHC7 MUTATED ZDHHC7 WILD-TYPE 
               7              386 
  ZDHHC7 MUTATED ZDHHC7 WILD-TYPE 
               7              386 
[1] "HTRA2 MUTATION ANALYSIS"
[1] 3
  HTRA2 MUTATED HTRA2 WILD-TYPE 
              7             386 
  HTRA2 MUTATED HTRA2 WILD-TYPE 
              7             386 
[1] "INSIG2 MUTATION ANALYSIS"
[1] 3
  INSIG2 MUTATED INSIG2 WILD-TYPE 
               7              386 
  INSIG2 MUTATED INSIG2 WILD-TYPE 
               7              386 
[1] "CLSTN1 MUTATION ANALYSIS"
[1] 3
  CLSTN1 MUTATED CLSTN1 WILD-TYPE 
              10              383 
  CLSTN1 MUTATED CLSTN1 WILD-TYPE 
              10              383 
[1] "HNF1B MUTATION ANALYSIS"
[1] 3
  HNF1B MUTATED HNF1B WILD-TYPE 
              5             388 
  HNF1B MUTATED HNF1B WILD-TYPE 
              5             388 
[1] "IBTK MUTATION ANALYSIS"
[1] 3
  IBTK MUTATED IBTK WILD-TYPE 
            19            374 
  IBTK MUTATED IBTK WILD-TYPE 
            19            374 
[1] "SALL2 MUTATION ANALYSIS"
[1] 3
  SALL2 MUTATED SALL2 WILD-TYPE 
             14             379 
  SALL2 MUTATED SALL2 WILD-TYPE 
             14             379 
[1] "ELMO1 MUTATION ANALYSIS"
[1] 3
  ELMO1 MUTATED ELMO1 WILD-TYPE 
             23             370 
  ELMO1 MUTATED ELMO1 WILD-TYPE 
             23             370 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
            18            375 
  BRAF MUTATED BRAF WILD-TYPE 
            18            375 
[1] "NFAT5 MUTATION ANALYSIS"
[1] 3
  NFAT5 MUTATED NFAT5 WILD-TYPE 
             12             381 
  NFAT5 MUTATED NFAT5 WILD-TYPE 
             12             381 
[1] "ESRP2 MUTATION ANALYSIS"
[1] 3
  ESRP2 MUTATED ESRP2 WILD-TYPE 
              8             385 
  ESRP2 MUTATED ESRP2 WILD-TYPE 
              8             385 
[1] "DHX36 MUTATION ANALYSIS"
[1] 3
  DHX36 MUTATED DHX36 WILD-TYPE 
             20             373 
  DHX36 MUTATED DHX36 WILD-TYPE 
             20             373 
[1] "ZCCHC6 MUTATION ANALYSIS"
[1] 3
  ZCCHC6 MUTATED ZCCHC6 WILD-TYPE 
              12              381 
  ZCCHC6 MUTATED ZCCHC6 WILD-TYPE 
              12              381 
[1] "C8ORF38 MUTATION ANALYSIS"
[1] 3
  C8ORF38 MUTATED C8ORF38 WILD-TYPE 
                8               385 
  C8ORF38 MUTATED C8ORF38 WILD-TYPE 
                8               385 
[1] "NTAN1 MUTATION ANALYSIS"
[1] 3
  NTAN1 MUTATED NTAN1 WILD-TYPE 
              5             388 
  NTAN1 MUTATED NTAN1 WILD-TYPE 
              5             388 
[1] "MLXIPL MUTATION ANALYSIS"
[1] 3
  MLXIPL MUTATED MLXIPL WILD-TYPE 
              13              380 
  MLXIPL MUTATED MLXIPL WILD-TYPE 
              13              380 
[1] "SFRS18 MUTATION ANALYSIS"
[1] 3
  SFRS18 MUTATED SFRS18 WILD-TYPE 
              15              378 
  SFRS18 MUTATED SFRS18 WILD-TYPE 
              15              378 
[1] "PADI3 MUTATION ANALYSIS"
[1] 3
  PADI3 MUTATED PADI3 WILD-TYPE 
             13             380 
  PADI3 MUTATED PADI3 WILD-TYPE 
             13             380 
[1] "SLC38A6 MUTATION ANALYSIS"
[1] 3
  SLC38A6 MUTATED SLC38A6 WILD-TYPE 
                8               385 
  SLC38A6 MUTATED SLC38A6 WILD-TYPE 
                8               385 
[1] "RGS22 MUTATION ANALYSIS"
[1] 3
  RGS22 MUTATED RGS22 WILD-TYPE 
             21             372 
  RGS22 MUTATED RGS22 WILD-TYPE 
             21             372 
[1] "EVI5 MUTATION ANALYSIS"
[1] 3
  EVI5 MUTATED EVI5 WILD-TYPE 
            10            383 
  EVI5 MUTATED EVI5 WILD-TYPE 
            10            383 
[1] "POU5F1B MUTATION ANALYSIS"
[1] 3
  POU5F1B MUTATED POU5F1B WILD-TYPE 
                8               385 
  POU5F1B MUTATED POU5F1B WILD-TYPE 
                8               385 
[1] "NEIL1 MUTATION ANALYSIS"
[1] 3
  NEIL1 MUTATED NEIL1 WILD-TYPE 
              7             386 
  NEIL1 MUTATED NEIL1 WILD-TYPE 
              7             386 
[1] "LRRFIP2 MUTATION ANALYSIS"
[1] 3
  LRRFIP2 MUTATED LRRFIP2 WILD-TYPE 
                8               385 
  LRRFIP2 MUTATED LRRFIP2 WILD-TYPE 
                8               385 
[1] "IGDCC4 MUTATION ANALYSIS"
[1] 3
  IGDCC4 MUTATED IGDCC4 WILD-TYPE 
              13              380 
  IGDCC4 MUTATED IGDCC4 WILD-TYPE 
              13              380 
[1] "TRPM6 MUTATION ANALYSIS"
[1] 3
  TRPM6 MUTATED TRPM6 WILD-TYPE 
             22             371 
  TRPM6 MUTATED TRPM6 WILD-TYPE 
             22             371 
[1] "IL1F7 MUTATION ANALYSIS"
[1] 3
  IL1F7 MUTATED IL1F7 WILD-TYPE 
              3             390 
  IL1F7 MUTATED IL1F7 WILD-TYPE 
              3             390 
[1] "BRPF3 MUTATION ANALYSIS"
[1] 3
  BRPF3 MUTATED BRPF3 WILD-TYPE 
             11             382 
  BRPF3 MUTATED BRPF3 WILD-TYPE 
             11             382 
[1] "ACACB MUTATION ANALYSIS"
[1] 3
  ACACB MUTATED ACACB WILD-TYPE 
             32             361 
  ACACB MUTATED ACACB WILD-TYPE 
             32             361 
[1] "PIGZ MUTATION ANALYSIS"
[1] 3
  PIGZ MUTATED PIGZ WILD-TYPE 
             9            384 
  PIGZ MUTATED PIGZ WILD-TYPE 
             9            384 
[1] "SPATA2L MUTATION ANALYSIS"
[1] 3
  SPATA2L MUTATED SPATA2L WILD-TYPE 
                6               387 
  SPATA2L MUTATED SPATA2L WILD-TYPE 
                6               387 
[1] "SLC9A1 MUTATION ANALYSIS"
[1] 3
  SLC9A1 MUTATED SLC9A1 WILD-TYPE 
              12              381 
  SLC9A1 MUTATED SLC9A1 WILD-TYPE 
              12              381 
[1] "PAQR9 MUTATION ANALYSIS"
[1] 3
  PAQR9 MUTATED PAQR9 WILD-TYPE 
             16             377 
  PAQR9 MUTATED PAQR9 WILD-TYPE 
             16             377 
[1] "BTBD10 MUTATION ANALYSIS"
[1] 3
  BTBD10 MUTATED BTBD10 WILD-TYPE 
               5              388 
  BTBD10 MUTATED BTBD10 WILD-TYPE 
               5              388 
[1] "RAB40B MUTATION ANALYSIS"
[1] 3
  RAB40B MUTATED RAB40B WILD-TYPE 
               8              385 
  RAB40B MUTATED RAB40B WILD-TYPE 
               8              385 
[1] "CSNK1G3 MUTATION ANALYSIS"
[1] 3
  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE 
                9               384 
  CSNK1G3 MUTATED CSNK1G3 WILD-TYPE 
                9               384 
[1] "ITGB8 MUTATION ANALYSIS"
[1] 3
  ITGB8 MUTATED ITGB8 WILD-TYPE 
             15             378 
  ITGB8 MUTATED ITGB8 WILD-TYPE 
             15             378 
[1] "ADAMTS18 MUTATION ANALYSIS"
[1] 3
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                29                364 
  ADAMTS18 MUTATED ADAMTS18 WILD-TYPE 
                29                364 
[1] "NPR3 MUTATION ANALYSIS"
[1] 3
  NPR3 MUTATED NPR3 WILD-TYPE 
            10            383 
  NPR3 MUTATED NPR3 WILD-TYPE 
            10            383 
[1] "MTSS1L MUTATION ANALYSIS"
[1] 3
  MTSS1L MUTATED MTSS1L WILD-TYPE 
              10              383 
  MTSS1L MUTATED MTSS1L WILD-TYPE 
              10              383 
[1] "MINA MUTATION ANALYSIS"
[1] 3
  MINA MUTATED MINA WILD-TYPE 
             8            385 
  MINA MUTATED MINA WILD-TYPE 
             8            385 
[1] "CYTH3 MUTATION ANALYSIS"
[1] 3
  CYTH3 MUTATED CYTH3 WILD-TYPE 
              6             387 
  CYTH3 MUTATED CYTH3 WILD-TYPE 
              6             387 
[1] "PCDH19 MUTATION ANALYSIS"
[1] 3
  PCDH19 MUTATED PCDH19 WILD-TYPE 
              26              367 
  PCDH19 MUTATED PCDH19 WILD-TYPE 
              26              367 
[1] "C11ORF88 MUTATION ANALYSIS"
[1] 3
  C11ORF88 MUTATED C11ORF88 WILD-TYPE 
                 7                386 
  C11ORF88 MUTATED C11ORF88 WILD-TYPE 
                 7                386 
[1] "MON2 MUTATION ANALYSIS"
[1] 3
  MON2 MUTATED MON2 WILD-TYPE 
            16            377 
  MON2 MUTATED MON2 WILD-TYPE 
            16            377 
[1] "AKD1 MUTATION ANALYSIS"
[1] 3
  AKD1 MUTATED AKD1 WILD-TYPE 
            15            378 
  AKD1 MUTATED AKD1 WILD-TYPE 
            15            378 
[1] "EXOSC8 MUTATION ANALYSIS"
[1] 3
  EXOSC8 MUTATED EXOSC8 WILD-TYPE 
               6              387 
  EXOSC8 MUTATED EXOSC8 WILD-TYPE 
               6              387 
[1] "CDH11 MUTATION ANALYSIS"
[1] 3
  CDH11 MUTATED CDH11 WILD-TYPE 
             32             361 
  CDH11 MUTATED CDH11 WILD-TYPE 
             32             361 
[1] "HCRTR1 MUTATION ANALYSIS"
[1] 3
  HCRTR1 MUTATED HCRTR1 WILD-TYPE 
               6              387 
  HCRTR1 MUTATED HCRTR1 WILD-TYPE 
               6              387 
[1] "ANKRD12 MUTATION ANALYSIS"
[1] 3
  ANKRD12 MUTATED ANKRD12 WILD-TYPE 
               20               373 
  ANKRD12 MUTATED ANKRD12 WILD-TYPE 
               20               373 
[1] "BMPR1B MUTATION ANALYSIS"
[1] 3
  BMPR1B MUTATED BMPR1B WILD-TYPE 
               9              384 
  BMPR1B MUTATED BMPR1B WILD-TYPE 
               9              384 
[1] "CRYBG3 MUTATION ANALYSIS"
[1] 3
  CRYBG3 MUTATED CRYBG3 WILD-TYPE 
              14              379 
  CRYBG3 MUTATED CRYBG3 WILD-TYPE 
              14              379 
[1] "KIDINS220 MUTATION ANALYSIS"
[1] 3
  KIDINS220 MUTATED KIDINS220 WILD-TYPE 
                 18                 375 
  KIDINS220 MUTATED KIDINS220 WILD-TYPE 
                 18                 375 
[1] "INSM2 MUTATION ANALYSIS"
[1] 3
  INSM2 MUTATED INSM2 WILD-TYPE 
             12             381 
  INSM2 MUTATED INSM2 WILD-TYPE 
             12             381 
[1] "ELOVL2 MUTATION ANALYSIS"
[1] 3
  ELOVL2 MUTATED ELOVL2 WILD-TYPE 
               7              386 
  ELOVL2 MUTATED ELOVL2 WILD-TYPE 
               7              386 
[1] "GON4L MUTATION ANALYSIS"
[1] 3
  GON4L MUTATED GON4L WILD-TYPE 
             12             381 
  GON4L MUTATED GON4L WILD-TYPE 
             12             381 
[1] "MSL3 MUTATION ANALYSIS"
[1] 3
  MSL3 MUTATED MSL3 WILD-TYPE 
             9            384 
  MSL3 MUTATED MSL3 WILD-TYPE 
             9            384 
[1] "FANCA MUTATION ANALYSIS"
[1] 3
  FANCA MUTATED FANCA WILD-TYPE 
             12             381 
  FANCA MUTATED FANCA WILD-TYPE 
             12             381 
[1] "SMPD1 MUTATION ANALYSIS"
[1] 3
  SMPD1 MUTATED SMPD1 WILD-TYPE 
              6             387 
  SMPD1 MUTATED SMPD1 WILD-TYPE 
              6             387 
[1] "IKBIP MUTATION ANALYSIS"
[1] 3
  IKBIP MUTATED IKBIP WILD-TYPE 
              3             390 
  IKBIP MUTATED IKBIP WILD-TYPE 
              3             390 
[1] "LEFTY1 MUTATION ANALYSIS"
[1] 3
  LEFTY1 MUTATED LEFTY1 WILD-TYPE 
               3              390 
  LEFTY1 MUTATED LEFTY1 WILD-TYPE 
               3              390 
[1] "PIWIL2 MUTATION ANALYSIS"
[1] 3
  PIWIL2 MUTATED PIWIL2 WILD-TYPE 
               9              384 
  PIWIL2 MUTATED PIWIL2 WILD-TYPE 
               9              384 
[1] "ZNF7 MUTATION ANALYSIS"
[1] 3
  ZNF7 MUTATED ZNF7 WILD-TYPE 
             9            384 
  ZNF7 MUTATED ZNF7 WILD-TYPE 
             9            384 
[1] "CHST4 MUTATION ANALYSIS"
[1] 3
  CHST4 MUTATED CHST4 WILD-TYPE 
              7             386 
  CHST4 MUTATED CHST4 WILD-TYPE 
              7             386 
[1] "SCGB1A1 MUTATION ANALYSIS"
[1] 3
  SCGB1A1 MUTATED SCGB1A1 WILD-TYPE 
                3               390 
  SCGB1A1 MUTATED SCGB1A1 WILD-TYPE 
                3               390 
[1] "ZIM3 MUTATION ANALYSIS"
[1] 3
  ZIM3 MUTATED ZIM3 WILD-TYPE 
            11            382 
  ZIM3 MUTATED ZIM3 WILD-TYPE 
            11            382 
[1] "ACTG2 MUTATION ANALYSIS"
[1] 3
  ACTG2 MUTATED ACTG2 WILD-TYPE 
             10             383 
  ACTG2 MUTATED ACTG2 WILD-TYPE 
             10             383 
[1] "PIK3CB MUTATION ANALYSIS"
[1] 3
  PIK3CB MUTATED PIK3CB WILD-TYPE 
              11              382 
  PIK3CB MUTATED PIK3CB WILD-TYPE 
              11              382 
[1] "LAT2 MUTATION ANALYSIS"
[1] 3
  LAT2 MUTATED LAT2 WILD-TYPE 
             8            385 
  LAT2 MUTATED LAT2 WILD-TYPE 
             8            385 
[1] "ZBTB40 MUTATION ANALYSIS"
[1] 3
  ZBTB40 MUTATED ZBTB40 WILD-TYPE 
              11              382 
  ZBTB40 MUTATED ZBTB40 WILD-TYPE 
              11              382 
[1] "PIGO MUTATION ANALYSIS"
[1] 3
  PIGO MUTATED PIGO WILD-TYPE 
             9            384 
  PIGO MUTATED PIGO WILD-TYPE 
             9            384 
[1] "NAA16 MUTATION ANALYSIS"
[1] 3
  NAA16 MUTATED NAA16 WILD-TYPE 
              9             384 
  NAA16 MUTATED NAA16 WILD-TYPE 
              9             384 
[1] "NRN1 MUTATION ANALYSIS"
[1] 3
  NRN1 MUTATED NRN1 WILD-TYPE 
             3            390 
  NRN1 MUTATED NRN1 WILD-TYPE 
             3            390 
[1] "EPN1 MUTATION ANALYSIS"
[1] 3
  EPN1 MUTATED EPN1 WILD-TYPE 
             8            385 
  EPN1 MUTATED EPN1 WILD-TYPE 
             8            385 
[1] "PPARG MUTATION ANALYSIS"
[1] 3
  PPARG MUTATED PPARG WILD-TYPE 
              4             389 
  PPARG MUTATED PPARG WILD-TYPE 
              4             389 
[1] "C1ORF141 MUTATION ANALYSIS"
[1] 3
  C1ORF141 MUTATED C1ORF141 WILD-TYPE 
                12                381 
  C1ORF141 MUTATED C1ORF141 WILD-TYPE 
                12                381 
[1] "EXOSC10 MUTATION ANALYSIS"
[1] 3
  EXOSC10 MUTATED EXOSC10 WILD-TYPE 
               12               381 
  EXOSC10 MUTATED EXOSC10 WILD-TYPE 
               12               381 
[1] "ARID3A MUTATION ANALYSIS"
[1] 3
  ARID3A MUTATED ARID3A WILD-TYPE 
               6              387 
  ARID3A MUTATED ARID3A WILD-TYPE 
               6              387 
[1] "RAB14 MUTATION ANALYSIS"
[1] 3
  RAB14 MUTATED RAB14 WILD-TYPE 
              6             387 
  RAB14 MUTATED RAB14 WILD-TYPE 
              6             387 
[1] "IGSF9B MUTATION ANALYSIS"
[1] 3
  IGSF9B MUTATED IGSF9B WILD-TYPE 
              20              373 
  IGSF9B MUTATED IGSF9B WILD-TYPE 
              20              373 
[1] "ARNT MUTATION ANALYSIS"
[1] 3
  ARNT MUTATED ARNT WILD-TYPE 
             8            385 
  ARNT MUTATED ARNT WILD-TYPE 
             8            385 
[1] "CSNK2A2 MUTATION ANALYSIS"
[1] 3
  CSNK2A2 MUTATED CSNK2A2 WILD-TYPE 
                8               385 
  CSNK2A2 MUTATED CSNK2A2 WILD-TYPE 
                8               385 
[1] "HOXA1 MUTATION ANALYSIS"
[1] 3
  HOXA1 MUTATED HOXA1 WILD-TYPE 
             10             383 
  HOXA1 MUTATED HOXA1 WILD-TYPE 
             10             383 
[1] "SYNJ1 MUTATION ANALYSIS"
[1] 3
  SYNJ1 MUTATED SYNJ1 WILD-TYPE 
             11             382 
  SYNJ1 MUTATED SYNJ1 WILD-TYPE 
             11             382 
[1] "ABCC2 MUTATION ANALYSIS"
[1] 3
  ABCC2 MUTATED ABCC2 WILD-TYPE 
             16             377 
  ABCC2 MUTATED ABCC2 WILD-TYPE 
             16             377 
[1] "HEPACAM2 MUTATION ANALYSIS"
[1] 3
  HEPACAM2 MUTATED HEPACAM2 WILD-TYPE 
                 8                385 
  HEPACAM2 MUTATED HEPACAM2 WILD-TYPE 
                 8                385 
[1] "MAP4K4 MUTATION ANALYSIS"
[1] 3
  MAP4K4 MUTATED MAP4K4 WILD-TYPE 
              13              380 
  MAP4K4 MUTATED MAP4K4 WILD-TYPE 
              13              380 
[1] "B4GALT6 MUTATION ANALYSIS"
[1] 3
  B4GALT6 MUTATED B4GALT6 WILD-TYPE 
                6               387 
  B4GALT6 MUTATED B4GALT6 WILD-TYPE 
                6               387 
[1] "NAA25 MUTATION ANALYSIS"
[1] 3
  NAA25 MUTATED NAA25 WILD-TYPE 
             15             378 
  NAA25 MUTATED NAA25 WILD-TYPE 
             15             378 
[1] "SAFB MUTATION ANALYSIS"
[1] 3
  SAFB MUTATED SAFB WILD-TYPE 
             8            385 
  SAFB MUTATED SAFB WILD-TYPE 
             8            385 
[1] "ABLIM2 MUTATION ANALYSIS"
[1] 3
  ABLIM2 MUTATED ABLIM2 WILD-TYPE 
              14              379 
  ABLIM2 MUTATED ABLIM2 WILD-TYPE 
              14              379 
[1] "CEL MUTATION ANALYSIS"
[1] 3
  CEL MUTATED CEL WILD-TYPE 
           15           378 
  CEL MUTATED CEL WILD-TYPE 
           15           378 
[1] "FAM178A MUTATION ANALYSIS"
[1] 3
  FAM178A MUTATED FAM178A WILD-TYPE 
               11               382 
  FAM178A MUTATED FAM178A WILD-TYPE 
               11               382 
[1] "BUB1B MUTATION ANALYSIS"
[1] 3
  BUB1B MUTATED BUB1B WILD-TYPE 
             12             381 
  BUB1B MUTATED BUB1B WILD-TYPE 
             12             381 
[1] "EEA1 MUTATION ANALYSIS"
[1] 3
  EEA1 MUTATED EEA1 WILD-TYPE 
            14            379 
  EEA1 MUTATED EEA1 WILD-TYPE 
            14            379 
[1] "KCNH3 MUTATION ANALYSIS"
[1] 3
  KCNH3 MUTATED KCNH3 WILD-TYPE 
             17             376 
  KCNH3 MUTATED KCNH3 WILD-TYPE 
             17             376 
[1] "DIP2C MUTATION ANALYSIS"
[1] 3
  DIP2C MUTATED DIP2C WILD-TYPE 
             22             371 
  DIP2C MUTATED DIP2C WILD-TYPE 
             22             371 
[1] "KLHL1 MUTATION ANALYSIS"
[1] 3
  KLHL1 MUTATED KLHL1 WILD-TYPE 
             15             378 
  KLHL1 MUTATED KLHL1 WILD-TYPE 
             15             378 
[1] "ZC3H3 MUTATION ANALYSIS"
[1] 3
  ZC3H3 MUTATED ZC3H3 WILD-TYPE 
             19             374 
  ZC3H3 MUTATED ZC3H3 WILD-TYPE 
             19             374 
[1] "SLC22A16 MUTATION ANALYSIS"
[1] 3
  SLC22A16 MUTATED SLC22A16 WILD-TYPE 
                11                382 
  SLC22A16 MUTATED SLC22A16 WILD-TYPE 
                11                382 
[1] "NHLRC2 MUTATION ANALYSIS"
[1] 3
  NHLRC2 MUTATED NHLRC2 WILD-TYPE 
               7              386 
  NHLRC2 MUTATED NHLRC2 WILD-TYPE 
               7              386 
[1] "CEACAM3 MUTATION ANALYSIS"
[1] 3
  CEACAM3 MUTATED CEACAM3 WILD-TYPE 
                9               384 
  CEACAM3 MUTATED CEACAM3 WILD-TYPE 
                9               384 
[1] "THBS3 MUTATION ANALYSIS"
[1] 3
  THBS3 MUTATED THBS3 WILD-TYPE 
             10             383 
  THBS3 MUTATED THBS3 WILD-TYPE 
             10             383 
[1] "GPC4 MUTATION ANALYSIS"
[1] 3
  GPC4 MUTATED GPC4 WILD-TYPE 
             8            385 
  GPC4 MUTATED GPC4 WILD-TYPE 
             8            385 
[1] "ABTB1 MUTATION ANALYSIS"
[1] 3
  ABTB1 MUTATED ABTB1 WILD-TYPE 
             10             383 
  ABTB1 MUTATED ABTB1 WILD-TYPE 
             10             383 
[1] "NEK7 MUTATION ANALYSIS"
[1] 3
  NEK7 MUTATED NEK7 WILD-TYPE 
             6            387 
  NEK7 MUTATED NEK7 WILD-TYPE 
             6            387 
[1] "QTRTD1 MUTATION ANALYSIS"
[1] 3
  QTRTD1 MUTATED QTRTD1 WILD-TYPE 
               6              387 
  QTRTD1 MUTATED QTRTD1 WILD-TYPE 
               6              387 
[1] "UACA MUTATION ANALYSIS"
[1] 3
  UACA MUTATED UACA WILD-TYPE 
            14            379 
  UACA MUTATED UACA WILD-TYPE 
            14            379 
[1] "TMEM206 MUTATION ANALYSIS"
[1] 3
  TMEM206 MUTATED TMEM206 WILD-TYPE 
                7               386 
  TMEM206 MUTATED TMEM206 WILD-TYPE 
                7               386 
[1] "CDKN2AIP MUTATION ANALYSIS"
[1] 3
  CDKN2AIP MUTATED CDKN2AIP WILD-TYPE 
                 3                390 
  CDKN2AIP MUTATED CDKN2AIP WILD-TYPE 
                 3                390 
[1] "CLGN MUTATION ANALYSIS"
[1] 3
  CLGN MUTATED CLGN WILD-TYPE 
             9            384 
  CLGN MUTATED CLGN WILD-TYPE 
             9            384 
[1] "ACAA2 MUTATION ANALYSIS"
[1] 3
  ACAA2 MUTATED ACAA2 WILD-TYPE 
              8             385 
  ACAA2 MUTATED ACAA2 WILD-TYPE 
              8             385 
[1] "SLC25A45 MUTATION ANALYSIS"
[1] 3
  SLC25A45 MUTATED SLC25A45 WILD-TYPE 
                 9                384 
  SLC25A45 MUTATED SLC25A45 WILD-TYPE 
                 9                384 
[1] "TMEFF2 MUTATION ANALYSIS"
[1] 3
  TMEFF2 MUTATED TMEFF2 WILD-TYPE 
              10              383 
  TMEFF2 MUTATED TMEFF2 WILD-TYPE 
              10              383 
[1] "IFNA17 MUTATION ANALYSIS"
[1] 3
  IFNA17 MUTATED IFNA17 WILD-TYPE 
               4              389 
  IFNA17 MUTATED IFNA17 WILD-TYPE 
               4              389 
[1] "PGBD1 MUTATION ANALYSIS"
[1] 3
  PGBD1 MUTATED PGBD1 WILD-TYPE 
             14             379 
  PGBD1 MUTATED PGBD1 WILD-TYPE 
             14             379 
[1] "FCN2 MUTATION ANALYSIS"
[1] 3
  FCN2 MUTATED FCN2 WILD-TYPE 
            10            383 
  FCN2 MUTATED FCN2 WILD-TYPE 
            10            383 
[1] "PTPRJ MUTATION ANALYSIS"
[1] 3
  PTPRJ MUTATED PTPRJ WILD-TYPE 
             28             365 
  PTPRJ MUTATED PTPRJ WILD-TYPE 
             28             365 
[1] "C11ORF63 MUTATION ANALYSIS"
[1] 3
  C11ORF63 MUTATED C11ORF63 WILD-TYPE 
                20                373 
  C11ORF63 MUTATED C11ORF63 WILD-TYPE 
                20                373 
[1] "HSF4 MUTATION ANALYSIS"
[1] 3
  HSF4 MUTATED HSF4 WILD-TYPE 
             8            385 
  HSF4 MUTATED HSF4 WILD-TYPE 
             8            385 
[1] "CNPY4 MUTATION ANALYSIS"
[1] 3
  CNPY4 MUTATED CNPY4 WILD-TYPE 
              4             389 
  CNPY4 MUTATED CNPY4 WILD-TYPE 
              4             389 
[1] "FAM167A MUTATION ANALYSIS"
[1] 3
  FAM167A MUTATED FAM167A WILD-TYPE 
                8               385 
  FAM167A MUTATED FAM167A WILD-TYPE 
                8               385 
[1] "DMC1 MUTATION ANALYSIS"
[1] 3
  DMC1 MUTATED DMC1 WILD-TYPE 
             8            385 
  DMC1 MUTATED DMC1 WILD-TYPE 
             8            385 
[1] "DENND4C MUTATION ANALYSIS"
[1] 3
  DENND4C MUTATED DENND4C WILD-TYPE 
               16               377 
  DENND4C MUTATED DENND4C WILD-TYPE 
               16               377 
[1] "DEK MUTATION ANALYSIS"
[1] 3
  DEK MUTATED DEK WILD-TYPE 
            8           385 
  DEK MUTATED DEK WILD-TYPE 
            8           385 
[1] "SP140 MUTATION ANALYSIS"
[1] 3
  SP140 MUTATED SP140 WILD-TYPE 
             16             377 
  SP140 MUTATED SP140 WILD-TYPE 
             16             377 
[1] "EGR1 MUTATION ANALYSIS"
[1] 3
  EGR1 MUTATED EGR1 WILD-TYPE 
            12            381 
  EGR1 MUTATED EGR1 WILD-TYPE 
            12            381 
[1] "PKD2L2 MUTATION ANALYSIS"
[1] 3
  PKD2L2 MUTATED PKD2L2 WILD-TYPE 
              10              383 
  PKD2L2 MUTATED PKD2L2 WILD-TYPE 
              10              383 
[1] "FGF13 MUTATION ANALYSIS"
[1] 3
  FGF13 MUTATED FGF13 WILD-TYPE 
             15             378 
  FGF13 MUTATED FGF13 WILD-TYPE 
             15             378 
[1] "MAP4K5 MUTATION ANALYSIS"
[1] 3
  MAP4K5 MUTATED MAP4K5 WILD-TYPE 
               4              389 
  MAP4K5 MUTATED MAP4K5 WILD-TYPE 
               4              389 
[1] "ARID5B MUTATION ANALYSIS"
[1] 3
  ARID5B MUTATED ARID5B WILD-TYPE 
              15              378 
  ARID5B MUTATED ARID5B WILD-TYPE 
              15              378 
[1] "CCDC92 MUTATION ANALYSIS"
[1] 3
  CCDC92 MUTATED CCDC92 WILD-TYPE 
               7              386 
  CCDC92 MUTATED CCDC92 WILD-TYPE 
               7              386 
[1] "CNGA1 MUTATION ANALYSIS"
[1] 3
  CNGA1 MUTATED CNGA1 WILD-TYPE 
             10             383 
  CNGA1 MUTATED CNGA1 WILD-TYPE 
             10             383 
[1] "RAE1 MUTATION ANALYSIS"
[1] 3
  RAE1 MUTATED RAE1 WILD-TYPE 
             8            385 
  RAE1 MUTATED RAE1 WILD-TYPE 
             8            385 
[1] "ZC3H8 MUTATION ANALYSIS"
[1] 3
  ZC3H8 MUTATED ZC3H8 WILD-TYPE 
              4             389 
  ZC3H8 MUTATED ZC3H8 WILD-TYPE 
              4             389 
[1] "WDR53 MUTATION ANALYSIS"
[1] 3
  WDR53 MUTATED WDR53 WILD-TYPE 
              6             387 
  WDR53 MUTATED WDR53 WILD-TYPE 
              6             387 
[1] "EPB41L4B MUTATION ANALYSIS"
[1] 3
  EPB41L4B MUTATED EPB41L4B WILD-TYPE 
                18                375 
  EPB41L4B MUTATED EPB41L4B WILD-TYPE 
                18                375 
[1] "RNMT MUTATION ANALYSIS"
[1] 3
  RNMT MUTATED RNMT WILD-TYPE 
             8            385 
  RNMT MUTATED RNMT WILD-TYPE 
             8            385 
[1] "SUCNR1 MUTATION ANALYSIS"
[1] 3
  SUCNR1 MUTATED SUCNR1 WILD-TYPE 
               4              389 
  SUCNR1 MUTATED SUCNR1 WILD-TYPE 
               4              389 
[1] "NYNRIN MUTATION ANALYSIS"
[1] 3
  NYNRIN MUTATED NYNRIN WILD-TYPE 
              17              376 
  NYNRIN MUTATED NYNRIN WILD-TYPE 
              17              376 
[1] "PHTF1 MUTATION ANALYSIS"
[1] 3
  PHTF1 MUTATED PHTF1 WILD-TYPE 
             11             382 
  PHTF1 MUTATED PHTF1 WILD-TYPE 
             11             382 
[1] "CARD14 MUTATION ANALYSIS"
[1] 3
  CARD14 MUTATED CARD14 WILD-TYPE 
              13              380 
  CARD14 MUTATED CARD14 WILD-TYPE 
              13              380 
[1] "CASKIN1 MUTATION ANALYSIS"
[1] 3
  CASKIN1 MUTATED CASKIN1 WILD-TYPE 
               17               376 
  CASKIN1 MUTATED CASKIN1 WILD-TYPE 
               17               376 
[1] "C13ORF18 MUTATION ANALYSIS"
[1] 3
  C13ORF18 MUTATED C13ORF18 WILD-TYPE 
                10                383 
  C13ORF18 MUTATED C13ORF18 WILD-TYPE 
                10                383 
[1] "CCDC37 MUTATION ANALYSIS"
[1] 3
  CCDC37 MUTATED CCDC37 WILD-TYPE 
              14              379 
  CCDC37 MUTATED CCDC37 WILD-TYPE 
              14              379 
[1] "ETV1 MUTATION ANALYSIS"
[1] 3
  ETV1 MUTATED ETV1 WILD-TYPE 
             8            385 
  ETV1 MUTATED ETV1 WILD-TYPE 
             8            385 
[1] "TSPAN13 MUTATION ANALYSIS"
[1] 3
  TSPAN13 MUTATED TSPAN13 WILD-TYPE 
                4               389 
  TSPAN13 MUTATED TSPAN13 WILD-TYPE 
                4               389 
[1] "MAP1A MUTATION ANALYSIS"
[1] 3
  MAP1A MUTATED MAP1A WILD-TYPE 
             19             374 
  MAP1A MUTATED MAP1A WILD-TYPE 
             19             374 
[1] "FBXO32 MUTATION ANALYSIS"
[1] 3
  FBXO32 MUTATED FBXO32 WILD-TYPE 
               7              386 
  FBXO32 MUTATED FBXO32 WILD-TYPE 
               7              386 
[1] "PRAMEF2 MUTATION ANALYSIS"
[1] 3
  PRAMEF2 MUTATED PRAMEF2 WILD-TYPE 
               10               383 
  PRAMEF2 MUTATED PRAMEF2 WILD-TYPE 
               10               383 
[1] "C20ORF195 MUTATION ANALYSIS"
[1] 3
  C20ORF195 MUTATED C20ORF195 WILD-TYPE 
                  9                 384 
  C20ORF195 MUTATED C20ORF195 WILD-TYPE 
                  9                 384 
[1] "RERE MUTATION ANALYSIS"
[1] 3
  RERE MUTATED RERE WILD-TYPE 
            24            369 
  RERE MUTATED RERE WILD-TYPE 
            24            369 
[1] "WFIKKN2 MUTATION ANALYSIS"
[1] 3
  WFIKKN2 MUTATED WFIKKN2 WILD-TYPE 
               16               377 
  WFIKKN2 MUTATED WFIKKN2 WILD-TYPE 
               16               377 
[1] "OR1L3 MUTATION ANALYSIS"
[1] 3
  OR1L3 MUTATED OR1L3 WILD-TYPE 
              7             386 
  OR1L3 MUTATED OR1L3 WILD-TYPE 
              7             386 
[1] "MORC1 MUTATION ANALYSIS"
[1] 3
  MORC1 MUTATED MORC1 WILD-TYPE 
             13             380 
  MORC1 MUTATED MORC1 WILD-TYPE 
             13             380 
[1] "AP3B1 MUTATION ANALYSIS"
[1] 3
  AP3B1 MUTATED AP3B1 WILD-TYPE 
              9             384 
  AP3B1 MUTATED AP3B1 WILD-TYPE 
              9             384 
[1] "OSBPL6 MUTATION ANALYSIS"
[1] 3
  OSBPL6 MUTATED OSBPL6 WILD-TYPE 
              18              375 
  OSBPL6 MUTATED OSBPL6 WILD-TYPE 
              18              375 
[1] "EFHC1 MUTATION ANALYSIS"
[1] 3
  EFHC1 MUTATED EFHC1 WILD-TYPE 
             10             383 
  EFHC1 MUTATED EFHC1 WILD-TYPE 
             10             383 
[1] "DTNBP1 MUTATION ANALYSIS"
[1] 3
  DTNBP1 MUTATED DTNBP1 WILD-TYPE 
               6              387 
  DTNBP1 MUTATED DTNBP1 WILD-TYPE 
               6              387 
[1] "KCNH1 MUTATION ANALYSIS"
[1] 3
  KCNH1 MUTATED KCNH1 WILD-TYPE 
             20             373 
  KCNH1 MUTATED KCNH1 WILD-TYPE 
             20             373 
[1] "BBS10 MUTATION ANALYSIS"
[1] 3
  BBS10 MUTATED BBS10 WILD-TYPE 
              9             384 
  BBS10 MUTATED BBS10 WILD-TYPE 
              9             384 
[1] "SMARCC2 MUTATION ANALYSIS"
[1] 3
  SMARCC2 MUTATED SMARCC2 WILD-TYPE 
               18               375 
  SMARCC2 MUTATED SMARCC2 WILD-TYPE 
               18               375 
[1] "NRK MUTATION ANALYSIS"
[1] 3
  NRK MUTATED NRK WILD-TYPE 
           26           367 
  NRK MUTATED NRK WILD-TYPE 
           26           367 
[1] "WBP11 MUTATION ANALYSIS"
[1] 3
  WBP11 MUTATED WBP11 WILD-TYPE 
              5             388 
  WBP11 MUTATED WBP11 WILD-TYPE 
              5             388 
[1] "WSB2 MUTATION ANALYSIS"
[1] 3
  WSB2 MUTATED WSB2 WILD-TYPE 
             9            384 
  WSB2 MUTATED WSB2 WILD-TYPE 
             9            384 
[1] "SET MUTATION ANALYSIS"
[1] 3
  SET MUTATED SET WILD-TYPE 
            7           386 
  SET MUTATED SET WILD-TYPE 
            7           386 
[1] "CASC5 MUTATION ANALYSIS"
[1] 3
  CASC5 MUTATED CASC5 WILD-TYPE 
             21             372 
  CASC5 MUTATED CASC5 WILD-TYPE 
             21             372 
[1] "BEND5 MUTATION ANALYSIS"
[1] 3
  BEND5 MUTATED BEND5 WILD-TYPE 
              6             387 
  BEND5 MUTATED BEND5 WILD-TYPE 
              6             387 
[1] "FGF22 MUTATION ANALYSIS"
[1] 3
  FGF22 MUTATED FGF22 WILD-TYPE 
              4             389 
  FGF22 MUTATED FGF22 WILD-TYPE 
              4             389 
[1] "EIF2AK3 MUTATION ANALYSIS"
[1] 3
  EIF2AK3 MUTATED EIF2AK3 WILD-TYPE 
               19               374 
  EIF2AK3 MUTATED EIF2AK3 WILD-TYPE 
               19               374 
[1] "GALK1 MUTATION ANALYSIS"
[1] 3
  GALK1 MUTATED GALK1 WILD-TYPE 
              4             389 
  GALK1 MUTATED GALK1 WILD-TYPE 
              4             389 
[1] "ZNF334 MUTATION ANALYSIS"
[1] 3
  ZNF334 MUTATED ZNF334 WILD-TYPE 
              13              380 
  ZNF334 MUTATED ZNF334 WILD-TYPE 
              13              380 
[1] "HORMAD1 MUTATION ANALYSIS"
[1] 3
  HORMAD1 MUTATED HORMAD1 WILD-TYPE 
                7               386 
  HORMAD1 MUTATED HORMAD1 WILD-TYPE 
                7               386 
[1] "CSNK1G1 MUTATION ANALYSIS"
[1] 3
  CSNK1G1 MUTATED CSNK1G1 WILD-TYPE 
                7               386 
  CSNK1G1 MUTATED CSNK1G1 WILD-TYPE 
                7               386 
[1] "HIST1H1B MUTATION ANALYSIS"
[1] 3
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                11                382 
  HIST1H1B MUTATED HIST1H1B WILD-TYPE 
                11                382 
[1] "KIF20B MUTATION ANALYSIS"
[1] 3
  KIF20B MUTATED KIF20B WILD-TYPE 
              13              380 
  KIF20B MUTATED KIF20B WILD-TYPE 
              13              380 
[1] "SASH3 MUTATION ANALYSIS"
[1] 3
  SASH3 MUTATED SASH3 WILD-TYPE 
              8             385 
  SASH3 MUTATED SASH3 WILD-TYPE 
              8             385 
[1] "TCERG1 MUTATION ANALYSIS"
[1] 3
  TCERG1 MUTATED TCERG1 WILD-TYPE 
              12              381 
  TCERG1 MUTATED TCERG1 WILD-TYPE 
              12              381 
[1] "FBXL22 MUTATION ANALYSIS"
[1] 3
  FBXL22 MUTATED FBXL22 WILD-TYPE 
               5              388 
  FBXL22 MUTATED FBXL22 WILD-TYPE 
               5              388 
[1] "PARP15 MUTATION ANALYSIS"
[1] 3
  PARP15 MUTATED PARP15 WILD-TYPE 
               5              388 
  PARP15 MUTATED PARP15 WILD-TYPE 
               5              388 
[1] "NCAN MUTATION ANALYSIS"
[1] 3
  NCAN MUTATED NCAN WILD-TYPE 
            25            368 
  NCAN MUTATED NCAN WILD-TYPE 
            25            368 
[1] "SLC30A3 MUTATION ANALYSIS"
[1] 3
  SLC30A3 MUTATED SLC30A3 WILD-TYPE 
                9               384 
  SLC30A3 MUTATED SLC30A3 WILD-TYPE 
                9               384 
[1] "LRP1B MUTATION ANALYSIS"
[1] 3
  LRP1B MUTATED LRP1B WILD-TYPE 
            104             289 
  LRP1B MUTATED LRP1B WILD-TYPE 
            104             289 
[1] "GNAS MUTATION ANALYSIS"
[1] 3
  GNAS MUTATED GNAS WILD-TYPE 
            34            359 
  GNAS MUTATED GNAS WILD-TYPE 
            34            359 
[1] "FER MUTATION ANALYSIS"
[1] 3
  FER MUTATED FER WILD-TYPE 
           13           380 
  FER MUTATED FER WILD-TYPE 
           13           380 
[1] "GPATCH2 MUTATION ANALYSIS"
[1] 3
  GPATCH2 MUTATED GPATCH2 WILD-TYPE 
                9               384 
  GPATCH2 MUTATED GPATCH2 WILD-TYPE 
                9               384 
[1] "GFOD1 MUTATION ANALYSIS"
[1] 3
  GFOD1 MUTATED GFOD1 WILD-TYPE 
             13             380 
  GFOD1 MUTATED GFOD1 WILD-TYPE 
             13             380 
[1] "C3ORF33 MUTATION ANALYSIS"
[1] 3
  C3ORF33 MUTATED C3ORF33 WILD-TYPE 
                7               386 
  C3ORF33 MUTATED C3ORF33 WILD-TYPE 
                7               386 
[1] "MYCL1 MUTATION ANALYSIS"
[1] 3
  MYCL1 MUTATED MYCL1 WILD-TYPE 
              8             385 
  MYCL1 MUTATED MYCL1 WILD-TYPE 
              8             385 
[1] "SERPING1 MUTATION ANALYSIS"
[1] 3
  SERPING1 MUTATED SERPING1 WILD-TYPE 
                 8                385 
  SERPING1 MUTATED SERPING1 WILD-TYPE 
                 8                385 
[1] "TNFRSF13B MUTATION ANALYSIS"
[1] 3
  TNFRSF13B MUTATED TNFRSF13B WILD-TYPE 
                  7                 386 
  TNFRSF13B MUTATED TNFRSF13B WILD-TYPE 
                  7                 386 
[1] "ABCC1 MUTATION ANALYSIS"
[1] 3
  ABCC1 MUTATED ABCC1 WILD-TYPE 
             14             379 
  ABCC1 MUTATED ABCC1 WILD-TYPE 
             14             379 
[1] "CD1E MUTATION ANALYSIS"
[1] 3
  CD1E MUTATED CD1E WILD-TYPE 
            11            382 
  CD1E MUTATED CD1E WILD-TYPE 
            11            382 
[1] "ATG9A MUTATION ANALYSIS"
[1] 3
  ATG9A MUTATED ATG9A WILD-TYPE 
             11             382 
  ATG9A MUTATED ATG9A WILD-TYPE 
             11             382 
[1] "IGBP1 MUTATION ANALYSIS"
[1] 3
  IGBP1 MUTATED IGBP1 WILD-TYPE 
              6             387 
  IGBP1 MUTATED IGBP1 WILD-TYPE 
              6             387 
[1] "HIVEP2 MUTATION ANALYSIS"
[1] 3
  HIVEP2 MUTATED HIVEP2 WILD-TYPE 
              27              366 
  HIVEP2 MUTATED HIVEP2 WILD-TYPE 
              27              366 
[1] "FAM60A MUTATION ANALYSIS"
[1] 3
  FAM60A MUTATED FAM60A WILD-TYPE 
               3              390 
  FAM60A MUTATED FAM60A WILD-TYPE 
               3              390 
[1] "ARV1 MUTATION ANALYSIS"
[1] 3
  ARV1 MUTATED ARV1 WILD-TYPE 
             5            388 
  ARV1 MUTATED ARV1 WILD-TYPE 
             5            388 
[1] "ERI1 MUTATION ANALYSIS"
[1] 3
  ERI1 MUTATED ERI1 WILD-TYPE 
             4            389 
  ERI1 MUTATED ERI1 WILD-TYPE 
             4            389 
[1] "TM9SF3 MUTATION ANALYSIS"
[1] 3
  TM9SF3 MUTATED TM9SF3 WILD-TYPE 
              13              380 
  TM9SF3 MUTATED TM9SF3 WILD-TYPE 
              13              380 
[1] "ATP2C1 MUTATION ANALYSIS"
[1] 3
  ATP2C1 MUTATED ATP2C1 WILD-TYPE 
              13              380 
  ATP2C1 MUTATED ATP2C1 WILD-TYPE 
              13              380 
[1] "STK36 MUTATION ANALYSIS"
[1] 3
  STK36 MUTATED STK36 WILD-TYPE 
              8             385 
  STK36 MUTATED STK36 WILD-TYPE 
              8             385 
[1] "ISM1 MUTATION ANALYSIS"
[1] 3
  ISM1 MUTATED ISM1 WILD-TYPE 
            13            380 
  ISM1 MUTATED ISM1 WILD-TYPE 
            13            380 
[1] "GLTPD1 MUTATION ANALYSIS"
[1] 3
  GLTPD1 MUTATED GLTPD1 WILD-TYPE 
               4              389 
  GLTPD1 MUTATED GLTPD1 WILD-TYPE 
               4              389 
[1] "CLDN5 MUTATION ANALYSIS"
[1] 3
  CLDN5 MUTATED CLDN5 WILD-TYPE 
              4             389 
  CLDN5 MUTATED CLDN5 WILD-TYPE 
              4             389 
[1] "D4S234E MUTATION ANALYSIS"
[1] 3
  D4S234E MUTATED D4S234E WILD-TYPE 
                7               386 
  D4S234E MUTATED D4S234E WILD-TYPE 
                7               386 
[1] "EGLN1 MUTATION ANALYSIS"
[1] 3
  EGLN1 MUTATED EGLN1 WILD-TYPE 
              5             388 
  EGLN1 MUTATED EGLN1 WILD-TYPE 
              5             388 
[1] "C1ORF131 MUTATION ANALYSIS"
[1] 3
  C1ORF131 MUTATED C1ORF131 WILD-TYPE 
                 5                388 
  C1ORF131 MUTATED C1ORF131 WILD-TYPE 
                 5                388 
[1] "CSF1 MUTATION ANALYSIS"
[1] 3
  CSF1 MUTATED CSF1 WILD-TYPE 
             5            388 
  CSF1 MUTATED CSF1 WILD-TYPE 
             5            388 
[1] "TBC1D5 MUTATION ANALYSIS"
[1] 3
  TBC1D5 MUTATED TBC1D5 WILD-TYPE 
               9              384 
  TBC1D5 MUTATED TBC1D5 WILD-TYPE 
               9              384 
[1] "ZNF428 MUTATION ANALYSIS"
[1] 3
  ZNF428 MUTATED ZNF428 WILD-TYPE 
               5              388 
  ZNF428 MUTATED ZNF428 WILD-TYPE 
               5              388 
[1] "SLC38A1 MUTATION ANALYSIS"
[1] 3
  SLC38A1 MUTATED SLC38A1 WILD-TYPE 
                7               386 
  SLC38A1 MUTATED SLC38A1 WILD-TYPE 
                7               386 
[1] "ZNF570 MUTATION ANALYSIS"
[1] 3
  ZNF570 MUTATED ZNF570 WILD-TYPE 
              12              381 
  ZNF570 MUTATED ZNF570 WILD-TYPE 
              12              381 
[1] "GPR115 MUTATION ANALYSIS"
[1] 3
  GPR115 MUTATED GPR115 WILD-TYPE 
               5              388 
  GPR115 MUTATED GPR115 WILD-TYPE 
               5              388 
[1] "SLC45A4 MUTATION ANALYSIS"
[1] 3
  SLC45A4 MUTATED SLC45A4 WILD-TYPE 
               19               374 
  SLC45A4 MUTATED SLC45A4 WILD-TYPE 
               19               374 
[1] "NKX2-3 MUTATION ANALYSIS"
[1] 3
  NKX2-3 MUTATED NKX2-3 WILD-TYPE 
               8              385 
  NKX2-3 MUTATED NKX2-3 WILD-TYPE 
               8              385 
[1] "EPHA3 MUTATION ANALYSIS"
[1] 3
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             28             365 
  EPHA3 MUTATED EPHA3 WILD-TYPE 
             28             365 
[1] "GABRG3 MUTATION ANALYSIS"
[1] 3
  GABRG3 MUTATED GABRG3 WILD-TYPE 
               9              384 
  GABRG3 MUTATED GABRG3 WILD-TYPE 
               9              384 
[1] "EPHA10 MUTATION ANALYSIS"
[1] 3
  EPHA10 MUTATED EPHA10 WILD-TYPE 
              17              376 
  EPHA10 MUTATED EPHA10 WILD-TYPE 
              17              376 
[1] "SLC44A4 MUTATION ANALYSIS"
[1] 3
  SLC44A4 MUTATED SLC44A4 WILD-TYPE 
               15               378 
  SLC44A4 MUTATED SLC44A4 WILD-TYPE 
               15               378 
[1] "PPL MUTATION ANALYSIS"
[1] 3
  PPL MUTATED PPL WILD-TYPE 
           18           375 
  PPL MUTATED PPL WILD-TYPE 
           18           375 
[1] "TMEM63A MUTATION ANALYSIS"
[1] 3
  TMEM63A MUTATED TMEM63A WILD-TYPE 
               13               380 
  TMEM63A MUTATED TMEM63A WILD-TYPE 
               13               380 
[1] "ANKRD42 MUTATION ANALYSIS"
[1] 3
  ANKRD42 MUTATED ANKRD42 WILD-TYPE 
                8               385 
  ANKRD42 MUTATED ANKRD42 WILD-TYPE 
                8               385 
[1] "AVPR1A MUTATION ANALYSIS"
[1] 3
  AVPR1A MUTATED AVPR1A WILD-TYPE 
              15              378 
  AVPR1A MUTATED AVPR1A WILD-TYPE 
              15              378 
[1] "VILL MUTATION ANALYSIS"
[1] 3
  VILL MUTATED VILL WILD-TYPE 
            11            382 
  VILL MUTATED VILL WILD-TYPE 
            11            382 
[1] "ARRDC5 MUTATION ANALYSIS"
[1] 3
  ARRDC5 MUTATED ARRDC5 WILD-TYPE 
               4              389 
  ARRDC5 MUTATED ARRDC5 WILD-TYPE 
               4              389 
[1] "P2RY12 MUTATION ANALYSIS"
[1] 3
  P2RY12 MUTATED P2RY12 WILD-TYPE 
               9              384 
  P2RY12 MUTATED P2RY12 WILD-TYPE 
               9              384 
[1] "KIAA1217 MUTATION ANALYSIS"
[1] 3
  KIAA1217 MUTATED KIAA1217 WILD-TYPE 
                27                366 
  KIAA1217 MUTATED KIAA1217 WILD-TYPE 
                27                366 
[1] "MEPCE MUTATION ANALYSIS"
[1] 3
  MEPCE MUTATED MEPCE WILD-TYPE 
              8             385 
  MEPCE MUTATED MEPCE WILD-TYPE 
              8             385 
[1] "TRIM27 MUTATION ANALYSIS"
[1] 3
  TRIM27 MUTATED TRIM27 WILD-TYPE 
               5              388 
  TRIM27 MUTATED TRIM27 WILD-TYPE 
               5              388 
[1] "PTPN12 MUTATION ANALYSIS"
[1] 3
  PTPN12 MUTATED PTPN12 WILD-TYPE 
              12              381 
  PTPN12 MUTATED PTPN12 WILD-TYPE 
              12              381 
[1] "ITGAV MUTATION ANALYSIS"
[1] 3
  ITGAV MUTATED ITGAV WILD-TYPE 
             18             375 
  ITGAV MUTATED ITGAV WILD-TYPE 
             18             375 
[1] "PATL1 MUTATION ANALYSIS"
[1] 3
  PATL1 MUTATED PATL1 WILD-TYPE 
              7             386 
  PATL1 MUTATED PATL1 WILD-TYPE 
              7             386 
[1] "KCNE1 MUTATION ANALYSIS"
[1] 3
  KCNE1 MUTATED KCNE1 WILD-TYPE 
              4             389 
  KCNE1 MUTATED KCNE1 WILD-TYPE 
              4             389 
[1] "TLR4 MUTATION ANALYSIS"
[1] 3
  TLR4 MUTATED TLR4 WILD-TYPE 
            27            366 
  TLR4 MUTATED TLR4 WILD-TYPE 
            27            366 
[1] "XRCC2 MUTATION ANALYSIS"
[1] 3
  XRCC2 MUTATED XRCC2 WILD-TYPE 
              6             387 
  XRCC2 MUTATED XRCC2 WILD-TYPE 
              6             387 
[1] "CRYBB1 MUTATION ANALYSIS"
[1] 3
  CRYBB1 MUTATED CRYBB1 WILD-TYPE 
              10              383 
  CRYBB1 MUTATED CRYBB1 WILD-TYPE 
              10              383 
[1] "MED23 MUTATION ANALYSIS"
[1] 3
  MED23 MUTATED MED23 WILD-TYPE 
             18             375 
  MED23 MUTATED MED23 WILD-TYPE 
             18             375 
[1] "SFRS2 MUTATION ANALYSIS"
[1] 3
  SFRS2 MUTATED SFRS2 WILD-TYPE 
              4             389 
  SFRS2 MUTATED SFRS2 WILD-TYPE 
              4             389 
[1] "SGK196 MUTATION ANALYSIS"
[1] 3
  SGK196 MUTATED SGK196 WILD-TYPE 
               7              386 
  SGK196 MUTATED SGK196 WILD-TYPE 
               7              386 
[1] "TDG MUTATION ANALYSIS"
[1] 3
  TDG MUTATED TDG WILD-TYPE 
            6           387 
  TDG MUTATED TDG WILD-TYPE 
            6           387 
[1] "KIAA0408 MUTATION ANALYSIS"
[1] 3
  KIAA0408 MUTATED KIAA0408 WILD-TYPE 
                14                379 
  KIAA0408 MUTATED KIAA0408 WILD-TYPE 
                14                379 
[1] "PIAS1 MUTATION ANALYSIS"
[1] 3
  PIAS1 MUTATED PIAS1 WILD-TYPE 
              9             384 
  PIAS1 MUTATED PIAS1 WILD-TYPE 
              9             384 
[1] "FLJ10357 MUTATION ANALYSIS"
[1] 3
  FLJ10357 MUTATED FLJ10357 WILD-TYPE 
                20                373 
  FLJ10357 MUTATED FLJ10357 WILD-TYPE 
                20                373 
[1] "SMC5 MUTATION ANALYSIS"
[1] 3
  SMC5 MUTATED SMC5 WILD-TYPE 
            10            383 
  SMC5 MUTATED SMC5 WILD-TYPE 
            10            383 
[1] "ATOH1 MUTATION ANALYSIS"
[1] 3
  ATOH1 MUTATED ATOH1 WILD-TYPE 
              6             387 
  ATOH1 MUTATED ATOH1 WILD-TYPE 
              6             387 
[1] "AAMP MUTATION ANALYSIS"
[1] 3
  AAMP MUTATED AAMP WILD-TYPE 
             3            390 
  AAMP MUTATED AAMP WILD-TYPE 
             3            390 
[1] "SYBU MUTATION ANALYSIS"
[1] 3
  SYBU MUTATED SYBU WILD-TYPE 
            15            378 
  SYBU MUTATED SYBU WILD-TYPE 
            15            378 
[1] "CPT2 MUTATION ANALYSIS"
[1] 3
  CPT2 MUTATED CPT2 WILD-TYPE 
             6            387 
  CPT2 MUTATED CPT2 WILD-TYPE 
             6            387 
[1] "SCNN1D MUTATION ANALYSIS"
[1] 3
  SCNN1D MUTATED SCNN1D WILD-TYPE 
              10              383 
  SCNN1D MUTATED SCNN1D WILD-TYPE 
              10              383 
[1] "OLFM3 MUTATION ANALYSIS"
[1] 3
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              8             385 
  OLFM3 MUTATED OLFM3 WILD-TYPE 
              8             385 
[1] "LRRC43 MUTATION ANALYSIS"
[1] 3
  LRRC43 MUTATED LRRC43 WILD-TYPE 
              12              381 
  LRRC43 MUTATED LRRC43 WILD-TYPE 
              12              381 
[1] "TMC2 MUTATION ANALYSIS"
[1] 3
  TMC2 MUTATED TMC2 WILD-TYPE 
            17            376 
  TMC2 MUTATED TMC2 WILD-TYPE 
            17            376 
[1] "USP30 MUTATION ANALYSIS"
[1] 3
  USP30 MUTATED USP30 WILD-TYPE 
              9             384 
  USP30 MUTATED USP30 WILD-TYPE 
              9             384 
[1] "TRIP6 MUTATION ANALYSIS"
[1] 3
  TRIP6 MUTATED TRIP6 WILD-TYPE 
              8             385 
  TRIP6 MUTATED TRIP6 WILD-TYPE 
              8             385 
[1] "PBX2 MUTATION ANALYSIS"
[1] 3
  PBX2 MUTATED PBX2 WILD-TYPE 
            10            383 
  PBX2 MUTATED PBX2 WILD-TYPE 
            10            383 
[1] "TNNT3 MUTATION ANALYSIS"
[1] 3
  TNNT3 MUTATED TNNT3 WILD-TYPE 
              7             386 
  TNNT3 MUTATED TNNT3 WILD-TYPE 
              7             386 
[1] "OSTALPHA MUTATION ANALYSIS"
[1] 3
  OSTALPHA MUTATED OSTALPHA WILD-TYPE 
                 4                389 
  OSTALPHA MUTATED OSTALPHA WILD-TYPE 
                 4                389 
[1] "OXCT2 MUTATION ANALYSIS"
[1] 3
  OXCT2 MUTATED OXCT2 WILD-TYPE 
              5             388 
  OXCT2 MUTATED OXCT2 WILD-TYPE 
              5             388 
[1] "XIRP2 MUTATION ANALYSIS"
[1] 3
  XIRP2 MUTATED XIRP2 WILD-TYPE 
             56             337 
  XIRP2 MUTATED XIRP2 WILD-TYPE 
             56             337 
[1] "CREBBP MUTATION ANALYSIS"
[1] 3
  CREBBP MUTATED CREBBP WILD-TYPE 
              36              357 
  CREBBP MUTATED CREBBP WILD-TYPE 
              36              357 
[1] "TJP2 MUTATION ANALYSIS"
[1] 3
  TJP2 MUTATED TJP2 WILD-TYPE 
            14            379 
  TJP2 MUTATED TJP2 WILD-TYPE 
            14            379 
[1] "PTPN11 MUTATION ANALYSIS"
[1] 3
  PTPN11 MUTATED PTPN11 WILD-TYPE 
               8              385 
  PTPN11 MUTATED PTPN11 WILD-TYPE 
               8              385 
[1] "ASCL4 MUTATION ANALYSIS"
[1] 3
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              7             386 
  ASCL4 MUTATED ASCL4 WILD-TYPE 
              7             386 
[1] "TESK1 MUTATION ANALYSIS"
[1] 3
  TESK1 MUTATED TESK1 WILD-TYPE 
             12             381 
  TESK1 MUTATED TESK1 WILD-TYPE 
             12             381 
[1] "ORC2L MUTATION ANALYSIS"
[1] 3
  ORC2L MUTATED ORC2L WILD-TYPE 
              7             386 
  ORC2L MUTATED ORC2L WILD-TYPE 
              7             386 
[1] "DHX15 MUTATION ANALYSIS"
[1] 3
  DHX15 MUTATED DHX15 WILD-TYPE 
             11             382 
  DHX15 MUTATED DHX15 WILD-TYPE 
             11             382 
[1] "LRRC4 MUTATION ANALYSIS"
[1] 3
  LRRC4 MUTATED LRRC4 WILD-TYPE 
             21             372 
  LRRC4 MUTATED LRRC4 WILD-TYPE 
             21             372 
[1] "FIGNL1 MUTATION ANALYSIS"
[1] 3
  FIGNL1 MUTATED FIGNL1 WILD-TYPE 
               9              384 
  FIGNL1 MUTATED FIGNL1 WILD-TYPE 
               9              384 
[1] "CD6 MUTATION ANALYSIS"
[1] 3
  CD6 MUTATED CD6 WILD-TYPE 
           10           383 
  CD6 MUTATED CD6 WILD-TYPE 
           10           383 
[1] "POGZ MUTATION ANALYSIS"
[1] 3
  POGZ MUTATED POGZ WILD-TYPE 
            24            369 
  POGZ MUTATED POGZ WILD-TYPE 
            24            369 
[1] "RBM16 MUTATION ANALYSIS"
[1] 3
  RBM16 MUTATED RBM16 WILD-TYPE 
             13             380 
  RBM16 MUTATED RBM16 WILD-TYPE 
             13             380 
[1] "SPOCK1 MUTATION ANALYSIS"
[1] 3
  SPOCK1 MUTATED SPOCK1 WILD-TYPE 
              13              380 
  SPOCK1 MUTATED SPOCK1 WILD-TYPE 
              13              380 
[1] "FAH MUTATION ANALYSIS"
[1] 3
  FAH MUTATED FAH WILD-TYPE 
            7           386 
  FAH MUTATED FAH WILD-TYPE 
            7           386 
[1] "SERPINB8 MUTATION ANALYSIS"
[1] 3
  SERPINB8 MUTATED SERPINB8 WILD-TYPE 
                 8                385 
  SERPINB8 MUTATED SERPINB8 WILD-TYPE 
                 8                385 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 393 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 393 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED      133     26     25      2
  TP53 WILD-TYPE     71    111     22      1
D1V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1          133             71
  CLUS_2           26            111
  CLUS_3           25             22
  CLUS_4            2              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       17     50      6     70     26
  TP53 WILD-TYPE     22     46     38     18     54
D1V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           17             22
  CLUS_2           50             46
  CLUS_3            6             38
  CLUS_4           70             18
  CLUS_5           26             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       15     41     35     36     25
  TP53 WILD-TYPE     11     38     38     46     33
D1V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           15             11
  CLUS_2           41             38
  CLUS_3           35             38
  CLUS_4           36             46
  CLUS_5           25             33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       67     22     33     30
  TP53 WILD-TYPE     60     29     38     39
D1V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           67             60
  CLUS_2           22             29
  CLUS_3           33             38
  CLUS_4           30             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       60     29     31     29     27
  TP53 WILD-TYPE     24     56     54     40     20
D1V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           60             24
  CLUS_2           29             56
  CLUS_3           31             54
  CLUS_4           29             40
  CLUS_5           27             20
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       45     20     64     47
  TP53 WILD-TYPE     50     54     57     33
D1V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           45             50
  CLUS_2           20             54
  CLUS_3           64             57
  CLUS_4           47             33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53 MUTATED       30     23     33     37     18     46
  TP53 WILD-TYPE     22     41     39     67     22     13
D1V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           30             22
  CLUS_2           23             41
  CLUS_3           33             39
  CLUS_4           37             67
  CLUS_5           18             22
  CLUS_6           46             13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       91     23     73
  TP53 WILD-TYPE    126     52     26
D1V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           91            126
  CLUS_2           23             52
  CLUS_3           73             26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       68     49     32
  TP53 WILD-TYPE     53     59     40
D1V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           68             53
  CLUS_2           49             59
  CLUS_3           32             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53 MUTATED       37     23     21     42     26
  TP53 WILD-TYPE     51     43     24     13     21
D1V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           37             51
  CLUS_2           23             43
  CLUS_3           21             24
  CLUS_4           42             13
  CLUS_5           26             21
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = ARID1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       19     66     13      0
  ARID1A WILD-TYPE    185     71     34      3
D2V1, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             19              185
  CLUS_2             66               71
  CLUS_3             13               34
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        9     37     19      7     11
  ARID1A WILD-TYPE     30     59     25     81     69
D2V2, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              9               30
  CLUS_2             37               59
  CLUS_3             19               25
  CLUS_4              7               81
  CLUS_5             11               69
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED        4     25     20     13     17
  ARID1A WILD-TYPE     22     54     53     69     41
D2V3, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1              4               22
  CLUS_2             25               54
  CLUS_3             20               53
  CLUS_4             13               69
  CLUS_5             17               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       23     23     18     15
  ARID1A WILD-TYPE    104     28     53     54
D2V4, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             23              104
  CLUS_2             23               28
  CLUS_3             18               53
  CLUS_4             15               54
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED       11     21     37     15     10
  ARID1A WILD-TYPE     73     64     48     54     37
D2V5, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             11               73
  CLUS_2             21               64
  CLUS_3             37               48
  CLUS_4             15               54
  CLUS_5             10               37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1A MUTATED       26     20     20     28
  ARID1A WILD-TYPE     69     54    101     52
D2V6, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             26               69
  CLUS_2             20               54
  CLUS_3             20              101
  CLUS_4             28               52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID1A MUTATED       18     25     19     26      6      5
  ARID1A WILD-TYPE     34     39     53     78     34     54
D2V7, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             18               34
  CLUS_2             25               39
  CLUS_3             19               53
  CLUS_4             26               78
  CLUS_5              6               34
  CLUS_6              5               54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       67     16     16
  ARID1A WILD-TYPE    150     59     83
D2V8, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             67              150
  CLUS_2             16               59
  CLUS_3             16               83
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1A MUTATED       33     19     20
  ARID1A WILD-TYPE     88     89     52
D2V9, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             33               88
  CLUS_2             19               89
  CLUS_3             20               52
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1A MUTATED       24     12      9      7     20
  ARID1A WILD-TYPE     64     54     36     48     27
D2V10, multiclass
        clus
vv       ARID1A MUTATED ARID1A WILD-TYPE
  CLUS_1             24               64
  CLUS_2             12               54
  CLUS_3              9               36
  CLUS_4              7               48
  CLUS_5             20               27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = RNF43 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF43 MUTATED        4     36      5      0
  RNF43 WILD-TYPE    200    101     42      3
D3V1, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            36             101
  CLUS_3             5              42
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF43 MUTATED        2     25      5      1      2
  RNF43 WILD-TYPE     37     71     39     87     78
D3V2, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            25              71
  CLUS_3             5              39
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF43 MUTATED        3     17     10      3      6
  RNF43 WILD-TYPE     23     62     63     79     52
D3V3, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             3              23
  CLUS_2            17              62
  CLUS_3            10              63
  CLUS_4             3              79
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF43 MUTATED        9     17     10      3
  RNF43 WILD-TYPE    118     34     61     66
D3V4, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             9             118
  CLUS_2            17              34
  CLUS_3            10              61
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF43 MUTATED        1      8     17      6      9
  RNF43 WILD-TYPE     83     77     68     63     38
D3V5, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             8              77
  CLUS_3            17              68
  CLUS_4             6              63
  CLUS_5             9              38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF43 MUTATED       11      4      2     24
  RNF43 WILD-TYPE     84     70    119     56
D3V6, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1            11              84
  CLUS_2             4              70
  CLUS_3             2             119
  CLUS_4            24              56
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNF43 MUTATED       13     14      9      7      2      0
  RNF43 WILD-TYPE     39     50     63     97     38     59
D3V7, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1            13              39
  CLUS_2            14              50
  CLUS_3             9              63
  CLUS_4             7              97
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED       38      4      3
  RNF43 WILD-TYPE    179     71     96
D3V8, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1            38             179
  CLUS_2             4              71
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RNF43 MUTATED       14      5     10
  RNF43 WILD-TYPE    107    103     62
D3V9, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1            14             107
  CLUS_2             5             103
  CLUS_3            10              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF43 MUTATED       11      2      6      0     10
  RNF43 WILD-TYPE     77     64     39     55     37
D3V10, multiclass
        clus
vv       RNF43 MUTATED RNF43 WILD-TYPE
  CLUS_1            11              77
  CLUS_2             2              64
  CLUS_3             6              39
  CLUS_4             0              55
  CLUS_5            10              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = XYLT2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XYLT2 MUTATED        3     29      5      0
  XYLT2 WILD-TYPE    201    108     42      3
D4V1, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            29             108
  CLUS_3             5              42
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XYLT2 MUTATED        2     24      5      1      1
  XYLT2 WILD-TYPE     37     72     39     87     79
D4V2, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            24              72
  CLUS_3             5              39
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XYLT2 MUTATED        1     11     12      1      7
  XYLT2 WILD-TYPE     25     68     61     81     51
D4V3, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2            11              68
  CLUS_3            12              61
  CLUS_4             1              81
  CLUS_5             7              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XYLT2 MUTATED        7     15      8      2
  XYLT2 WILD-TYPE    120     36     63     67
D4V4, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             7             120
  CLUS_2            15              36
  CLUS_3             8              63
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XYLT2 MUTATED        2      8     17      5      3
  XYLT2 WILD-TYPE     82     77     68     64     44
D4V5, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             8              77
  CLUS_3            17              68
  CLUS_4             5              64
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XYLT2 MUTATED       10      4      2     19
  XYLT2 WILD-TYPE     85     70    119     61
D4V6, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1            10              85
  CLUS_2             4              70
  CLUS_3             2             119
  CLUS_4            19              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XYLT2 MUTATED       10     10      9      5      2      2
  XYLT2 WILD-TYPE     42     54     63     99     38     57
D4V7, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1            10              42
  CLUS_2            10              54
  CLUS_3             9              63
  CLUS_4             5              99
  CLUS_5             2              38
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XYLT2 MUTATED       30      3      5
  XYLT2 WILD-TYPE    187     72     94
D4V8, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1            30             187
  CLUS_2             3              72
  CLUS_3             5              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XYLT2 MUTATED       13      5     10
  XYLT2 WILD-TYPE    108    103     62
D4V9, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1            13             108
  CLUS_2             5             103
  CLUS_3            10              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XYLT2 MUTATED       10      2      4      1     11
  XYLT2 WILD-TYPE     78     64     41     54     36
D4V10, multiclass
        clus
vv       XYLT2 MUTATED XYLT2 WILD-TYPE
  CLUS_1            10              78
  CLUS_2             2              64
  CLUS_3             4              41
  CLUS_4             1              54
  CLUS_5            11              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = KRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        9     23      5      0
  KRAS WILD-TYPE    195    114     42      3
D5V1, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            9            195
  CLUS_2           23            114
  CLUS_3            5             42
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED        6     13      6      2      2
  KRAS WILD-TYPE     33     83     38     86     78
D5V2, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            6             33
  CLUS_2           13             83
  CLUS_3            6             38
  CLUS_4            2             86
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED        1      9     10      7      5
  KRAS WILD-TYPE     25     70     63     75     53
D5V3, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            1             25
  CLUS_2            9             70
  CLUS_3           10             63
  CLUS_4            7             75
  CLUS_5            5             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        9     13      5      5
  KRAS WILD-TYPE    118     38     66     64
D5V4, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            9            118
  CLUS_2           13             38
  CLUS_3            5             66
  CLUS_4            5             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED        2      6     18      2      5
  KRAS WILD-TYPE     82     79     67     67     42
D5V5, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            2             82
  CLUS_2            6             79
  CLUS_3           18             67
  CLUS_4            2             67
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRAS MUTATED        6      8      3     16
  KRAS WILD-TYPE     89     66    118     64
D5V6, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            6             89
  CLUS_2            8             66
  CLUS_3            3            118
  CLUS_4           16             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRAS MUTATED        9     10     10      6      0      2
  KRAS WILD-TYPE     43     54     62     98     40     57
D5V7, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1            9             43
  CLUS_2           10             54
  CLUS_3           10             62
  CLUS_4            6             98
  CLUS_5            0             40
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       27      5      5
  KRAS WILD-TYPE    190     70     94
D5V8, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           27            190
  CLUS_2            5             70
  CLUS_3            5             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KRAS MUTATED       15      7      2
  KRAS WILD-TYPE    106    101     70
D5V9, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           15            106
  CLUS_2            7            101
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRAS MUTATED       11      3      2      4      4
  KRAS WILD-TYPE     77     63     43     51     43
D5V10, multiclass
        clus
vv       KRAS MUTATED KRAS WILD-TYPE
  CLUS_1           11             77
  CLUS_2            3             63
  CLUS_3            2             43
  CLUS_4            4             51
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = LARP4B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP4B MUTATED        4     24      2      0
  LARP4B WILD-TYPE    200    113     45      3
D6V1, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              4              200
  CLUS_2             24              113
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP4B MUTATED        2     17      2      0      2
  LARP4B WILD-TYPE     37     79     42     88     78
D6V2, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              2               37
  CLUS_2             17               79
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP4B MUTATED        1      9      7      1      8
  LARP4B WILD-TYPE     25     70     66     81     50
D6V3, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              1               25
  CLUS_2              9               70
  CLUS_3              7               66
  CLUS_4              1               81
  CLUS_5              8               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP4B MUTATED        5     13      7      1
  LARP4B WILD-TYPE    122     38     64     68
D6V4, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              5              122
  CLUS_2             13               38
  CLUS_3              7               64
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP4B MUTATED        2      4     12      4      6
  LARP4B WILD-TYPE     82     81     73     65     41
D6V5, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              2               82
  CLUS_2              4               81
  CLUS_3             12               73
  CLUS_4              4               65
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP4B MUTATED        6      4      3     15
  LARP4B WILD-TYPE     89     70    118     65
D6V6, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              6               89
  CLUS_2              4               70
  CLUS_3              3              118
  CLUS_4             15               65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LARP4B MUTATED        7     11      6      4      1      1
  LARP4B WILD-TYPE     45     53     66    100     39     58
D6V7, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              7               45
  CLUS_2             11               53
  CLUS_3              6               66
  CLUS_4              4              100
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP4B MUTATED       25      2      3
  LARP4B WILD-TYPE    192     73     96
D6V8, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1             25              192
  CLUS_2              2               73
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP4B MUTATED       13      2      7
  LARP4B WILD-TYPE    108    106     65
D6V9, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1             13              108
  CLUS_2              2              106
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP4B MUTATED        5      2      3      1     11
  LARP4B WILD-TYPE     83     64     42     54     36
D6V10, multiclass
        clus
vv       LARP4B MUTATED LARP4B WILD-TYPE
  CLUS_1              5               83
  CLUS_2              2               64
  CLUS_3              3               42
  CLUS_4              1               54
  CLUS_5             11               36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = HLA-B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        2     24      2      0
  HLA-B WILD-TYPE    202    113     45      3
D7V1, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             2             202
  CLUS_2            24             113
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-B MUTATED        1     11      8      1      1
  HLA-B WILD-TYPE     38     85     36     87     79
D7V2, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             1              38
  CLUS_2            11              85
  CLUS_3             8              36
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-B MUTATED        3     10      5      0      6
  HLA-B WILD-TYPE     23     69     68     82     52
D7V3, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             3              23
  CLUS_2            10              69
  CLUS_3             5              68
  CLUS_4             0              82
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        7     10      6      1
  HLA-B WILD-TYPE    120     41     65     68
D7V4, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             7             120
  CLUS_2            10              41
  CLUS_3             6              65
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-B MUTATED        1      4     14      5      3
  HLA-B WILD-TYPE     83     81     71     64     44
D7V5, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             1              83
  CLUS_2             4              81
  CLUS_3            14              71
  CLUS_4             5              64
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-B MUTATED        7      4      3     13
  HLA-B WILD-TYPE     88     70    118     67
D7V6, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             7              88
  CLUS_2             4              70
  CLUS_3             3             118
  CLUS_4            13              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HLA-B MUTATED        3     11      6      5      2      1
  HLA-B WILD-TYPE     49     53     66     99     38     58
D7V7, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             3              49
  CLUS_2            11              53
  CLUS_3             6              66
  CLUS_4             5              99
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED       22      2      4
  HLA-B WILD-TYPE    195     73     95
D7V8, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1            22             195
  CLUS_2             2              73
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-B MUTATED        6      3      8
  HLA-B WILD-TYPE    115    105     64
D7V9, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             6             115
  CLUS_2             3             105
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-B MUTATED        7      2      4      0      4
  HLA-B WILD-TYPE     81     64     41     55     43
D7V10, multiclass
        clus
vv       HLA-B MUTATED HLA-B WILD-TYPE
  CLUS_1             7              81
  CLUS_2             2              64
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = RHOA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        4     14      1      0
  RHOA WILD-TYPE    200    123     46      3
D8V1, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            4            200
  CLUS_2           14            123
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED        1      6      3      2      5
  RHOA WILD-TYPE     38     90     41     86     75
D8V2, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             38
  CLUS_2            6             90
  CLUS_3            3             41
  CLUS_4            2             86
  CLUS_5            5             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED        1      4      4      4      3
  RHOA WILD-TYPE     25     75     69     78     55
D8V3, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             75
  CLUS_3            4             69
  CLUS_4            4             78
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        5      3      5      3
  RHOA WILD-TYPE    122     48     66     66
D8V4, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            5            122
  CLUS_2            3             48
  CLUS_3            5             66
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED        1      5      4      3      4
  RHOA WILD-TYPE     83     80     81     66     43
D8V5, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            1             83
  CLUS_2            5             80
  CLUS_3            4             81
  CLUS_4            3             66
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOA MUTATED        5      6      2      4
  RHOA WILD-TYPE     90     68    119     76
D8V6, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            5             90
  CLUS_2            6             68
  CLUS_3            2            119
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RHOA MUTATED        3      2      3     10      1      0
  RHOA WILD-TYPE     49     62     69     94     39     59
D8V7, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            3             49
  CLUS_2            2             62
  CLUS_3            3             69
  CLUS_4           10             94
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED       13      5      1
  RHOA WILD-TYPE    204     70     98
D8V8, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1           13            204
  CLUS_2            5             70
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOA MUTATED        5      5      4
  RHOA WILD-TYPE    116    103     68
D8V9, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            5            116
  CLUS_2            5            103
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOA MUTATED        5      5      3      0      1
  RHOA WILD-TYPE     83     61     42     55     46
D8V10, multiclass
        clus
vv       RHOA MUTATED RHOA WILD-TYPE
  CLUS_1            5             83
  CLUS_2            5             61
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = SMAD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED       13      9      6      0
  SMAD4 WILD-TYPE    191    128     41      3
D9V1, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            13             191
  CLUS_2             9             128
  CLUS_3             6              41
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        5      7      3      4      5
  SMAD4 WILD-TYPE     34     89     41     84     75
D9V2, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             5              34
  CLUS_2             7              89
  CLUS_3             3              41
  CLUS_4             4              84
  CLUS_5             5              75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        1      8      2      8      3
  SMAD4 WILD-TYPE     25     71     71     74     55
D9V3, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             8              71
  CLUS_3             2              71
  CLUS_4             8              74
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED        4      5      5      8
  SMAD4 WILD-TYPE    123     46     66     61
D9V4, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             5              46
  CLUS_3             5              66
  CLUS_4             8              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        4      4      8      7      3
  SMAD4 WILD-TYPE     80     81     77     62     44
D9V5, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             4              80
  CLUS_2             4              81
  CLUS_3             8              77
  CLUS_4             7              62
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD4 MUTATED        8      4      7      7
  SMAD4 WILD-TYPE     87     70    114     73
D9V6, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             8              87
  CLUS_2             4              70
  CLUS_3             7             114
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMAD4 MUTATED        6      3      8     10      0      1
  SMAD4 WILD-TYPE     46     61     64     94     40     58
D9V7, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             3              61
  CLUS_3             8              64
  CLUS_4            10              94
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       17      6      5
  SMAD4 WILD-TYPE    200     69     94
D9V8, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            17             200
  CLUS_2             6              69
  CLUS_3             5              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD4 MUTATED       11      6      3
  SMAD4 WILD-TYPE    110    102     69
D9V9, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1            11             110
  CLUS_2             6             102
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD4 MUTATED        5      5      1      3      6
  SMAD4 WILD-TYPE     83     61     44     52     41
D9V10, multiclass
        clus
vv       SMAD4 MUTATED SMAD4 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             5              61
  CLUS_3             1              44
  CLUS_4             3              52
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = B2M MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B2M MUTATED        1     14      3      0
  B2M WILD-TYPE    203    123     44      3
D10V1, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           1           203
  CLUS_2          14           123
  CLUS_3           3            44
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B2M MUTATED        2     11      3      0      1
  B2M WILD-TYPE     37     85     41     88     79
D10V2, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           2            37
  CLUS_2          11            85
  CLUS_3           3            41
  CLUS_4           0            88
  CLUS_5           1            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B2M MUTATED        1      5      3      1      4
  B2M WILD-TYPE     25     74     70     81     54
D10V3, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           1            25
  CLUS_2           5            74
  CLUS_3           3            70
  CLUS_4           1            81
  CLUS_5           4            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B2M MUTATED        3      6      4      1
  B2M WILD-TYPE    124     45     67     68
D10V4, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           3           124
  CLUS_2           6            45
  CLUS_3           4            67
  CLUS_4           1            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B2M MUTATED        0      1     10      3      3
  B2M WILD-TYPE     84     84     75     66     44
D10V5, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           0            84
  CLUS_2           1            84
  CLUS_3          10            75
  CLUS_4           3            66
  CLUS_5           3            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B2M MUTATED        4      2      2      9
  B2M WILD-TYPE     91     72    119     71
D10V6, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           4            91
  CLUS_2           2            72
  CLUS_3           2           119
  CLUS_4           9            71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  B2M MUTATED        7      4      2      3      2      0
  B2M WILD-TYPE     45     60     70    101     38     59
D10V7, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           7            45
  CLUS_2           4            60
  CLUS_3           2            70
  CLUS_4           3           101
  CLUS_5           2            38
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED       15      3      0
  B2M WILD-TYPE    202     72     99
D10V8, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1          15           202
  CLUS_2           3            72
  CLUS_3           0            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  B2M MUTATED        7      3      7
  B2M WILD-TYPE    114    105     65
D10V9, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           7           114
  CLUS_2           3           105
  CLUS_3           7            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B2M MUTATED        5      2      3      0      7
  B2M WILD-TYPE     83     64     42     55     40
D10V10, multiclass
        clus
vv       B2M MUTATED B2M WILD-TYPE
  CLUS_1           5            83
  CLUS_2           2            64
  CLUS_3           3            42
  CLUS_4           0            55
  CLUS_5           7            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = C7ORF50 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF50 MUTATED        1     11      0      0
  C7ORF50 WILD-TYPE    203    126     47      3
D11V1, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               1               203
  CLUS_2              11               126
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF50 MUTATED        1     10      0      0      0
  C7ORF50 WILD-TYPE     38     86     44     88     80
D11V2, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               1                38
  CLUS_2              10                86
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF50 MUTATED        2      3      3      1      1
  C7ORF50 WILD-TYPE     24     76     70     81     57
D11V3, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               3                76
  CLUS_3               3                70
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF50 MUTATED        2      6      1      1
  C7ORF50 WILD-TYPE    125     45     70     68
D11V4, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               6                45
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF50 MUTATED        1      1      5      2      2
  C7ORF50 WILD-TYPE     83     84     80     67     45
D11V5, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               5                80
  CLUS_4               2                67
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF50 MUTATED        4      2      0      5
  C7ORF50 WILD-TYPE     91     72    121     75
D11V6, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               2                72
  CLUS_3               0               121
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C7ORF50 MUTATED        4      3      2      1      1      1
  C7ORF50 WILD-TYPE     48     61     70    103     39     58
D11V7, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               3                61
  CLUS_3               2                70
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF50 MUTATED        9      2      1
  C7ORF50 WILD-TYPE    208     73     98
D11V8, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               9               208
  CLUS_2               2                73
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF50 MUTATED        4      1      6
  C7ORF50 WILD-TYPE    117    107     66
D11V9, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               1               107
  CLUS_3               6                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF50 MUTATED        2      1      2      0      6
  C7ORF50 WILD-TYPE     86     65     43     55     41
D11V10, multiclass
        clus
vv       C7ORF50 MUTATED C7ORF50 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               6                41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = MLL4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED        3     33      8      0
  MLL4 WILD-TYPE    201    104     39      3
D12V1, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            3            201
  CLUS_2           33            104
  CLUS_3            8             39
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL4 MUTATED        3     26      6      1      2
  MLL4 WILD-TYPE     36     70     38     87     78
D12V2, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            3             36
  CLUS_2           26             70
  CLUS_3            6             38
  CLUS_4            1             87
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL4 MUTATED        2     13     12      3     10
  MLL4 WILD-TYPE     24     66     61     79     48
D12V3, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            2             24
  CLUS_2           13             66
  CLUS_3           12             61
  CLUS_4            3             79
  CLUS_5           10             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED       10     16      9      5
  MLL4 WILD-TYPE    117     35     62     64
D12V4, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           10            117
  CLUS_2           16             35
  CLUS_3            9             62
  CLUS_4            5             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL4 MUTATED        0      8     22      6      7
  MLL4 WILD-TYPE     84     77     63     63     40
D12V5, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            8             77
  CLUS_3           22             63
  CLUS_4            6             63
  CLUS_5            7             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL4 MUTATED       10      5      3     25
  MLL4 WILD-TYPE     85     69    118     55
D12V6, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           10             85
  CLUS_2            5             69
  CLUS_3            3            118
  CLUS_4           25             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL4 MUTATED       11     13     11      7      3      0
  MLL4 WILD-TYPE     41     51     61     97     37     59
D12V7, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           11             41
  CLUS_2           13             51
  CLUS_3           11             61
  CLUS_4            7             97
  CLUS_5            3             37
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED       37      3      5
  MLL4 WILD-TYPE    180     72     94
D12V8, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           37            180
  CLUS_2            3             72
  CLUS_3            5             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL4 MUTATED       14      6     13
  MLL4 WILD-TYPE    107    102     59
D12V9, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           14            107
  CLUS_2            6            102
  CLUS_3           13             59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL4 MUTATED       13      1      7      1     11
  MLL4 WILD-TYPE     75     65     38     54     36
D12V10, multiclass
        clus
vv       MLL4 MUTATED MLL4 WILD-TYPE
  CLUS_1           13             75
  CLUS_2            1             65
  CLUS_3            7             38
  CLUS_4            1             54
  CLUS_5           11             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED       10     16      3      0
  PTEN WILD-TYPE    194    121     44      3
D13V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           10            194
  CLUS_2           16            121
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        3      8      9      3      1
  PTEN WILD-TYPE     36     88     35     85     79
D13V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            3             36
  CLUS_2            8             88
  CLUS_3            9             35
  CLUS_4            3             85
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        0      9      7      1      6
  PTEN WILD-TYPE     26     70     66     81     52
D13V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            0             26
  CLUS_2            9             70
  CLUS_3            7             66
  CLUS_4            1             81
  CLUS_5            6             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED       10      7      5      1
  PTEN WILD-TYPE    117     44     66     68
D13V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           10            117
  CLUS_2            7             44
  CLUS_3            5             66
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED        4      4     11      6      3
  PTEN WILD-TYPE     80     81     74     63     44
D13V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4             80
  CLUS_2            4             81
  CLUS_3           11             74
  CLUS_4            6             63
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED        8      4      8      8
  PTEN WILD-TYPE     87     70    113     72
D13V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            8             87
  CLUS_2            4             70
  CLUS_3            8            113
  CLUS_4            8             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTEN MUTATED        4      9     10      5      1      1
  PTEN WILD-TYPE     48     55     62     99     39     58
D13V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1            4             48
  CLUS_2            9             55
  CLUS_3           10             62
  CLUS_4            5             99
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       24      3      3
  PTEN WILD-TYPE    193     72     96
D13V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           24            193
  CLUS_2            3             72
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       13      4      7
  PTEN WILD-TYPE    108    104     65
D13V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           13            108
  CLUS_2            4            104
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTEN MUTATED       12      2      4      2      4
  PTEN WILD-TYPE     76     64     41     53     43
D13V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           12             76
  CLUS_2            2             64
  CLUS_3            4             41
  CLUS_4            2             53
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = CDH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED        5     18      8      0
  CDH1 WILD-TYPE    199    119     39      3
D14V1, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            5            199
  CLUS_2           18            119
  CLUS_3            8             39
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH1 MUTATED        5      7      1      2     13
  CDH1 WILD-TYPE     34     89     43     86     67
D14V2, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            5             34
  CLUS_2            7             89
  CLUS_3            1             43
  CLUS_4            2             86
  CLUS_5           13             67
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH1 MUTATED        0      4      7     13      5
  CDH1 WILD-TYPE     26     75     66     69     53
D14V3, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            7             66
  CLUS_4           13             69
  CLUS_5            5             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED        7      5      6     11
  CDH1 WILD-TYPE    120     46     65     58
D14V4, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            7            120
  CLUS_2            5             46
  CLUS_3            6             65
  CLUS_4           11             58
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH1 MUTATED        1     15      4      3      6
  CDH1 WILD-TYPE     83     70     81     66     41
D14V5, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            1             83
  CLUS_2           15             70
  CLUS_3            4             81
  CLUS_4            3             66
  CLUS_5            6             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH1 MUTATED        6     15      2      6
  CDH1 WILD-TYPE     89     59    119     74
D14V6, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            6             89
  CLUS_2           15             59
  CLUS_3            2            119
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDH1 MUTATED        3      7      3     16      2      1
  CDH1 WILD-TYPE     49     57     69     88     38     58
D14V7, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            7             57
  CLUS_3            3             69
  CLUS_4           16             88
  CLUS_5            2             38
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED       15     15      2
  CDH1 WILD-TYPE    202     60     97
D14V8, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1           15            202
  CLUS_2           15             60
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDH1 MUTATED        6     13      7
  CDH1 WILD-TYPE    115     95     65
D14V9, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            6            115
  CLUS_2           13             95
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH1 MUTATED        8     11      4      1      2
  CDH1 WILD-TYPE     80     55     41     54     45
D14V10, multiclass
        clus
vv       CDH1 MUTATED CDH1 WILD-TYPE
  CLUS_1            8             80
  CLUS_2           11             55
  CLUS_3            4             41
  CLUS_4            1             54
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = GNG12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNG12 MUTATED        0     10      2      0
  GNG12 WILD-TYPE    204    127     45      3
D15V1, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            10             127
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNG12 MUTATED        0      5      2      0      1
  GNG12 WILD-TYPE     39     91     42     88     79
D15V2, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNG12 MUTATED        1      3      1      1      5
  GNG12 WILD-TYPE     25     76     72     81     53
D15V3, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNG12 MUTATED        2      6      1      2
  GNG12 WILD-TYPE    125     45     70     67
D15V4, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             6              45
  CLUS_3             1              70
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNG12 MUTATED        0      2      7      0      2
  GNG12 WILD-TYPE     84     83     78     69     45
D15V5, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             7              78
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNG12 MUTATED        2      2      1      6
  GNG12 WILD-TYPE     93     72    120     74
D15V6, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GNG12 MUTATED        1      8      3      0      0      0
  GNG12 WILD-TYPE     51     56     69    104     40     59
D15V7, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             8              56
  CLUS_3             3              69
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNG12 MUTATED       12      0      0
  GNG12 WILD-TYPE    205     75     99
D15V8, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GNG12 MUTATED        4      0      4
  GNG12 WILD-TYPE    117    108     68
D15V9, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNG12 MUTATED        3      0      2      0      3
  GNG12 WILD-TYPE     85     66     43     55     44
D15V10, multiclass
        clus
vv       GNG12 MUTATED GNG12 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = PGM5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGM5 MUTATED        1     33      4      0
  PGM5 WILD-TYPE    203    104     43      3
D16V1, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            1            203
  CLUS_2           33            104
  CLUS_3            4             43
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGM5 MUTATED        1     24      3      0      2
  PGM5 WILD-TYPE     38     72     41     88     78
D16V2, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            1             38
  CLUS_2           24             72
  CLUS_3            3             41
  CLUS_4            0             88
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGM5 MUTATED        1     11     10      0      9
  PGM5 WILD-TYPE     25     68     63     82     49
D16V3, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            1             25
  CLUS_2           11             68
  CLUS_3           10             63
  CLUS_4            0             82
  CLUS_5            9             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGM5 MUTATED        4     17      7      3
  PGM5 WILD-TYPE    123     34     64     66
D16V4, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            4            123
  CLUS_2           17             34
  CLUS_3            7             64
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGM5 MUTATED        1      5     19      6      7
  PGM5 WILD-TYPE     83     80     66     63     40
D16V5, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            5             80
  CLUS_3           19             66
  CLUS_4            6             63
  CLUS_5            7             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGM5 MUTATED       11      5      1     21
  PGM5 WILD-TYPE     84     69    120     59
D16V6, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           11             84
  CLUS_2            5             69
  CLUS_3            1            120
  CLUS_4           21             59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PGM5 MUTATED       14     13      7      3      1      1
  PGM5 WILD-TYPE     38     51     65    101     39     58
D16V7, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           14             38
  CLUS_2           13             51
  CLUS_3            7             65
  CLUS_4            3            101
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED       33      2      4
  PGM5 WILD-TYPE    184     73     95
D16V8, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           33            184
  CLUS_2            2             73
  CLUS_3            4             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PGM5 MUTATED       16      3      7
  PGM5 WILD-TYPE    105    105     65
D16V9, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1           16            105
  CLUS_2            3            105
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGM5 MUTATED        9      2      3      0     12
  PGM5 WILD-TYPE     79     64     42     55     35
D16V10, multiclass
        clus
vv       PGM5 MUTATED PGM5 WILD-TYPE
  CLUS_1            9             79
  CLUS_2            2             64
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5           12             35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = CBWD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBWD1 MUTATED        0     17      4      0
  CBWD1 WILD-TYPE    204    120     43      3
D17V1, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            17             120
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBWD1 MUTATED        1     13      3      0      0
  CBWD1 WILD-TYPE     38     83     41     88     80
D17V2, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2            13              83
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBWD1 MUTATED        0      7      4      1      7
  CBWD1 WILD-TYPE     26     72     69     81     51
D17V3, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             7              72
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             7              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBWD1 MUTATED        4      9      5      1
  CBWD1 WILD-TYPE    123     42     66     68
D17V4, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             9              42
  CLUS_3             5              66
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBWD1 MUTATED        0      3     11      2      4
  CBWD1 WILD-TYPE     84     82     74     67     43
D17V5, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3            11              74
  CLUS_4             2              67
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBWD1 MUTATED        5      3      0     12
  CBWD1 WILD-TYPE     90     71    121     68
D17V6, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             3              71
  CLUS_3             0             121
  CLUS_4            12              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CBWD1 MUTATED        3      9      4      5      0      0
  CBWD1 WILD-TYPE     49     55     68     99     40     59
D17V7, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             9              55
  CLUS_3             4              68
  CLUS_4             5              99
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD1 MUTATED       19      1      1
  CBWD1 WILD-TYPE    198     74     98
D17V8, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1            19             198
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD1 MUTATED        5      4      6
  CBWD1 WILD-TYPE    116    104     66
D17V9, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             4             104
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBWD1 MUTATED        8      1      4      0      2
  CBWD1 WILD-TYPE     80     65     41     55     45
D17V10, multiclass
        clus
vv       CBWD1 MUTATED CBWD1 WILD-TYPE
  CLUS_1             8              80
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = ZBTB20 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        1     33      3      0
  ZBTB20 WILD-TYPE    203    104     44      3
D18V1, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             33              104
  CLUS_3              3               44
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB20 MUTATED        0     23      1      0      4
  ZBTB20 WILD-TYPE     39     73     43     88     76
D18V2, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              0               39
  CLUS_2             23               73
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              4               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB20 MUTATED        2      9      9      4      6
  ZBTB20 WILD-TYPE     24     70     64     78     52
D18V3, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              9               70
  CLUS_3              9               64
  CLUS_4              4               78
  CLUS_5              6               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        4     15      6      5
  ZBTB20 WILD-TYPE    123     36     65     64
D18V4, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              4              123
  CLUS_2             15               36
  CLUS_3              6               65
  CLUS_4              5               64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB20 MUTATED        0      6     19      5      6
  ZBTB20 WILD-TYPE     84     79     66     64     41
D18V5, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              6               79
  CLUS_3             19               66
  CLUS_4              5               64
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB20 MUTATED        8      4      3     21
  ZBTB20 WILD-TYPE     87     70    118     59
D18V6, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              8               87
  CLUS_2              4               70
  CLUS_3              3              118
  CLUS_4             21               59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZBTB20 MUTATED       12     12      8      3      2      0
  ZBTB20 WILD-TYPE     40     52     64    101     38     59
D18V7, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1             12               40
  CLUS_2             12               52
  CLUS_3              8               64
  CLUS_4              3              101
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED       30      4      3
  ZBTB20 WILD-TYPE    187     71     96
D18V8, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1             30              187
  CLUS_2              4               71
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB20 MUTATED       10      4     10
  ZBTB20 WILD-TYPE    111    104     62
D18V9, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1             10              111
  CLUS_2              4              104
  CLUS_3             10               62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB20 MUTATED        9      0      5      0     10
  ZBTB20 WILD-TYPE     79     66     40     55     37
D18V10, multiclass
        clus
vv       ZBTB20 MUTATED ZBTB20 WILD-TYPE
  CLUS_1              9               79
  CLUS_2              0               66
  CLUS_3              5               40
  CLUS_4              0               55
  CLUS_5             10               37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = ARID4A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID4A MUTATED        3     16      2      0
  ARID4A WILD-TYPE    201    121     45      3
D19V1, multiclass
        clus
vv       ARID4A MUTATED ARID4A WILD-TYPE
  CLUS_1              3              201
  CLUS_2             16              121
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID4A MUTATED        2     11      2      0      3
  ARID4A WILD-TYPE     37     85     42     88     77
D19V2, multiclass
        clus
vv       ARID4A MUTATED ARID4A WILD-TYPE
  CLUS_1              2               37
  CLUS_2             11               85
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID4A MUTATED        2      5      7      3      3
  ARID4A WILD-TYPE     24     74     66     79     55
D19V3, multiclass
        clus
vv       ARID4A MUTATED ARID4A WILD-TYPE
  CLUS_1              2               24
  CLUS_2              5               74
  CLUS_3              7               66
  CLUS_4              3               79
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID4A MUTATED        6      7      5      2
  ARID4A WILD-TYPE    121     44     66     67
D19V4, multiclass
        clus
vv       ARID4A MUTATED ARID4A WILD-TYPE
  CLUS_1              6              121
  CLUS_2              7               44
  CLUS_3              5               66
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID4A MUTATED        2      4     11      2      2
  ARID4A WILD-TYPE     82     81     74     67     45
D19V5, multiclass
        clus
vv       ARID4A MUTATED ARID4A WILD-TYPE
  CLUS_1              2               82
  CLUS_2              4               81
  CLUS_3             11               74
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID4A MUTATED        5      5      3      8
  ARID4A WILD-TYPE     90     69    118     72
D19V6, multiclass
        clus
vv       ARID4A MUTATED ARID4A WILD-TYPE
  CLUS_1              5               90
  CLUS_2              5               69
  CLUS_3              3              118
  CLUS_4              8               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID4A MUTATED        6      7      1      6      1      1
  ARID4A WILD-TYPE     46     57     71     98     39     58
D19V7, multiclass
        clus
vv       ARID4A MUTATED ARID4A WILD-TYPE
  CLUS_1              6               46
  CLUS_2              7               57
  CLUS_3              1               71
  CLUS_4              6               98
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID4A MUTATED       14      5      3
  ARID4A WILD-TYPE    203     70     96
D19V8, multiclass
        clus
vv       ARID4A MUTATED ARID4A WILD-TYPE
  CLUS_1             14              203
  CLUS_2              5               70
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID4A MUTATED        6      2      7
  ARID4A WILD-TYPE    115    106     65
D19V9, multiclass
        clus
vv       ARID4A MUTATED ARID4A WILD-TYPE
  CLUS_1              6              115
  CLUS_2              2              106
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID4A MUTATED        5      2      4      0      4
  ARID4A WILD-TYPE     83     64     41     55     43
D19V10, multiclass
        clus
vv       ARID4A MUTATED ARID4A WILD-TYPE
  CLUS_1              5               83
  CLUS_2              2               64
  CLUS_3              4               41
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = MLL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       11     47      9      0
  MLL2 WILD-TYPE    193     90     38      3
D20V1, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           11            193
  CLUS_2           47             90
  CLUS_3            9             38
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL2 MUTATED        4     31     11      2      4
  MLL2 WILD-TYPE     35     65     33     86     76
D20V2, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            4             35
  CLUS_2           31             65
  CLUS_3           11             33
  CLUS_4            2             86
  CLUS_5            4             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL2 MUTATED        3     19     17      3     15
  MLL2 WILD-TYPE     23     60     56     79     43
D20V3, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            3             23
  CLUS_2           19             60
  CLUS_3           17             56
  CLUS_4            3             79
  CLUS_5           15             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       17     25     10      5
  MLL2 WILD-TYPE    110     26     61     64
D20V4, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           17            110
  CLUS_2           25             26
  CLUS_3           10             61
  CLUS_4            5             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL2 MUTATED        5      8     29     14      8
  MLL2 WILD-TYPE     79     77     56     55     39
D20V5, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1            5             79
  CLUS_2            8             77
  CLUS_3           29             56
  CLUS_4           14             55
  CLUS_5            8             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL2 MUTATED       18      9     10     27
  MLL2 WILD-TYPE     77     65    111     53
D20V6, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           18             77
  CLUS_2            9             65
  CLUS_3           10            111
  CLUS_4           27             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL2 MUTATED       13     20     18      7      5      4
  MLL2 WILD-TYPE     39     44     54     97     35     55
D20V7, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           13             39
  CLUS_2           20             44
  CLUS_3           18             54
  CLUS_4            7             97
  CLUS_5            5             35
  CLUS_6            4             55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       53      6      8
  MLL2 WILD-TYPE    164     69     91
D20V8, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           53            164
  CLUS_2            6             69
  CLUS_3            8             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL2 MUTATED       22      5     17
  MLL2 WILD-TYPE     99    103     55
D20V9, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           22             99
  CLUS_2            5            103
  CLUS_3           17             55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL2 MUTATED       16      3      9      0     16
  MLL2 WILD-TYPE     72     63     36     55     31
D20V10, multiclass
        clus
vv       MLL2 MUTATED MLL2 WILD-TYPE
  CLUS_1           16             72
  CLUS_2            3             63
  CLUS_3            9             36
  CLUS_4            0             55
  CLUS_5           16             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = FBXW7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        4     26      2      0
  FBXW7 WILD-TYPE    200    111     45      3
D21V1, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            26             111
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        1     18      3      4      3
  FBXW7 WILD-TYPE     38     78     41     84     77
D21V2, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              38
  CLUS_2            18              78
  CLUS_3             3              41
  CLUS_4             4              84
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        1     10      8      4      5
  FBXW7 WILD-TYPE     25     69     65     78     53
D21V3, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             1              25
  CLUS_2            10              69
  CLUS_3             8              65
  CLUS_4             4              78
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        5      9      9      5
  FBXW7 WILD-TYPE    122     42     62     64
D21V4, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             9              42
  CLUS_3             9              62
  CLUS_4             5              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED        3      5     16      1      3
  FBXW7 WILD-TYPE     81     80     69     68     44
D21V5, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             5              80
  CLUS_3            16              69
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXW7 MUTATED        4      5      5     14
  FBXW7 WILD-TYPE     91     69    116     66
D21V6, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             5              69
  CLUS_3             5             116
  CLUS_4            14              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXW7 MUTATED        8      6      7      5      3      3
  FBXW7 WILD-TYPE     44     58     65     99     37     56
D21V7, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1             8              44
  CLUS_2             6              58
  CLUS_3             7              65
  CLUS_4             5              99
  CLUS_5             3              37
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       20      5      7
  FBXW7 WILD-TYPE    197     70     92
D21V8, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            20             197
  CLUS_2             5              70
  CLUS_3             7              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FBXW7 MUTATED       14      3      9
  FBXW7 WILD-TYPE    107    105     63
D21V9, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            14             107
  CLUS_2             3             105
  CLUS_3             9              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXW7 MUTATED       10      2      4      3      7
  FBXW7 WILD-TYPE     78     64     41     52     40
D21V10, multiclass
        clus
vv       FBXW7 MUTATED FBXW7 WILD-TYPE
  CLUS_1            10              78
  CLUS_2             2              64
  CLUS_3             4              41
  CLUS_4             3              52
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = MBD6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD6 MUTATED        4     16      3      0
  MBD6 WILD-TYPE    200    121     44      3
D22V1, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            4            200
  CLUS_2           16            121
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD6 MUTATED        2     11      2      2      1
  MBD6 WILD-TYPE     37     85     42     86     79
D22V2, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            2             37
  CLUS_2           11             85
  CLUS_3            2             42
  CLUS_4            2             86
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD6 MUTATED        0     10      3      0      6
  MBD6 WILD-TYPE     26     69     70     82     52
D22V3, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            0             26
  CLUS_2           10             69
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            6             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD6 MUTATED        3      9      7      0
  MBD6 WILD-TYPE    124     42     64     69
D22V4, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            9             42
  CLUS_3            7             64
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD6 MUTATED        0      2     14      1      5
  MBD6 WILD-TYPE     84     83     71     68     42
D22V5, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3           14             71
  CLUS_4            1             68
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD6 MUTATED        4      1      1     16
  MBD6 WILD-TYPE     91     73    120     64
D22V6, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4           16             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MBD6 MUTATED        6      9      4      3      2      0
  MBD6 WILD-TYPE     46     55     68    101     38     59
D22V7, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            6             46
  CLUS_2            9             55
  CLUS_3            4             68
  CLUS_4            3            101
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD6 MUTATED       19      2      3
  MBD6 WILD-TYPE    198     73     96
D22V8, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1           19            198
  CLUS_2            2             73
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD6 MUTATED        6      2      6
  MBD6 WILD-TYPE    115    106     66
D22V9, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            6            115
  CLUS_2            2            106
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD6 MUTATED        3      1      3      0      7
  MBD6 WILD-TYPE     85     65     42     55     40
D22V10, multiclass
        clus
vv       MBD6 MUTATED MBD6 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            7             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = MUC6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC6 MUTATED       18     21      6      1
  MUC6 WILD-TYPE    186    116     41      2
D23V1, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1           18            186
  CLUS_2           21            116
  CLUS_3            6             41
  CLUS_4            1              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC6 MUTATED        4     14      5     10      7
  MUC6 WILD-TYPE     35     82     39     78     73
D23V2, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            4             35
  CLUS_2           14             82
  CLUS_3            5             39
  CLUS_4           10             78
  CLUS_5            7             73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC6 MUTATED        3     12     10      3      6
  MUC6 WILD-TYPE     23     67     63     79     52
D23V3, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            3             23
  CLUS_2           12             67
  CLUS_3           10             63
  CLUS_4            3             79
  CLUS_5            6             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC6 MUTATED       11     13      8      2
  MUC6 WILD-TYPE    116     38     63     67
D23V4, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1           11            116
  CLUS_2           13             38
  CLUS_3            8             63
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC6 MUTATED        7      6     19      7      6
  MUC6 WILD-TYPE     77     79     66     62     41
D23V5, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            7             77
  CLUS_2            6             79
  CLUS_3           19             66
  CLUS_4            7             62
  CLUS_5            6             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MUC6 MUTATED       13      4     12     16
  MUC6 WILD-TYPE     82     70    109     64
D23V6, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1           13             82
  CLUS_2            4             70
  CLUS_3           12            109
  CLUS_4           16             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MUC6 MUTATED        7     11     10      7      3      7
  MUC6 WILD-TYPE     45     53     62     97     37     52
D23V7, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1            7             45
  CLUS_2           11             53
  CLUS_3           10             62
  CLUS_4            7             97
  CLUS_5            3             37
  CLUS_6            7             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED       31      4     10
  MUC6 WILD-TYPE    186     71     89
D23V8, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1           31            186
  CLUS_2            4             71
  CLUS_3           10             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MUC6 MUTATED       17     10      7
  MUC6 WILD-TYPE    104     98     65
D23V9, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1           17            104
  CLUS_2           10             98
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MUC6 MUTATED       10      4      5      8      7
  MUC6 WILD-TYPE     78     62     40     47     40
D23V10, multiclass
        clus
vv       MUC6 MUTATED MUC6 WILD-TYPE
  CLUS_1           10             78
  CLUS_2            4             62
  CLUS_3            5             40
  CLUS_4            8             47
  CLUS_5            7             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = DDX17 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX17 MUTATED        2     12      1      0
  DDX17 WILD-TYPE    202    125     46      3
D24V1, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            12             125
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX17 MUTATED        0      7      4      0      1
  DDX17 WILD-TYPE     39     89     40     88     79
D24V2, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              89
  CLUS_3             4              40
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX17 MUTATED        1      5      3      0      4
  DDX17 WILD-TYPE     25     74     70     82     54
D24V3, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX17 MUTATED        3      6      3      1
  DDX17 WILD-TYPE    124     45     68     68
D24V4, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             6              45
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX17 MUTATED        0      4      5      4      1
  DDX17 WILD-TYPE     84     81     80     65     46
D24V5, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             4              81
  CLUS_3             5              80
  CLUS_4             4              65
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX17 MUTATED        4      1      0      9
  DDX17 WILD-TYPE     91     73    121     71
D24V6, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX17 MUTATED        2      7      3      3      0      0
  DDX17 WILD-TYPE     50     57     69    101     40     59
D24V7, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             7              57
  CLUS_3             3              69
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX17 MUTATED       13      0      2
  DDX17 WILD-TYPE    204     75     97
D24V8, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1            13             204
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX17 MUTATED        4      2      4
  DDX17 WILD-TYPE    117    106     68
D24V9, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX17 MUTATED        4      0      2      1      3
  DDX17 WILD-TYPE     84     66     43     54     44
D24V10, multiclass
        clus
vv       DDX17 MUTATED DDX17 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = HOXD8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXD8 MUTATED        1     11      1      0
  HOXD8 WILD-TYPE    203    126     46      3
D25V1, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXD8 MUTATED        0      8      1      0      1
  HOXD8 WILD-TYPE     39     88     43     88     79
D25V2, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             8              88
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXD8 MUTATED        1      4      3      0      3
  HOXD8 WILD-TYPE     25     75     70     82     55
D25V3, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXD8 MUTATED        3      6      2      0
  HOXD8 WILD-TYPE    124     45     69     69
D25V4, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             6              45
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXD8 MUTATED        0      2      8      1      1
  HOXD8 WILD-TYPE     84     83     77     68     46
D25V5, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             8              77
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXD8 MUTATED        3      1      2      6
  HOXD8 WILD-TYPE     92     73    119     74
D25V6, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HOXD8 MUTATED        3      6      3      0      1      0
  HOXD8 WILD-TYPE     49     58     69    104     39     59
D25V7, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             6              58
  CLUS_3             3              69
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOXD8 MUTATED       11      0      2
  HOXD8 WILD-TYPE    206     75     97
D25V8, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOXD8 MUTATED        3      1      6
  HOXD8 WILD-TYPE    118    107     66
D25V9, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXD8 MUTATED        2      0      4      0      4
  HOXD8 WILD-TYPE     86     66     41     55     43
D25V10, multiclass
        clus
vv       HOXD8 MUTATED HOXD8 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = ZBTB7C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB7C MUTATED        1     15      1      0
  ZBTB7C WILD-TYPE    203    122     46      3
D26V1, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              1              203
  CLUS_2             15              122
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB7C MUTATED        0     13      3      0      0
  ZBTB7C WILD-TYPE     39     83     41     88     80
D26V2, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              0               39
  CLUS_2             13               83
  CLUS_3              3               41
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB7C MUTATED        1      3      6      0      2
  ZBTB7C WILD-TYPE     25     76     67     82     56
D26V3, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              6               67
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB7C MUTATED        2      7      2      1
  ZBTB7C WILD-TYPE    125     44     69     68
D26V4, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              2              125
  CLUS_2              7               44
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB7C MUTATED        0      3      5      3      4
  ZBTB7C WILD-TYPE     84     82     80     66     43
D26V5, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3              5               80
  CLUS_4              3               66
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB7C MUTATED        6      1      0      8
  ZBTB7C WILD-TYPE     89     73    121     72
D26V6, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              6               89
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              8               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZBTB7C MUTATED        6      4      2      2      3      0
  ZBTB7C WILD-TYPE     46     60     70    102     37     59
D26V7, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              6               46
  CLUS_2              4               60
  CLUS_3              2               70
  CLUS_4              2              102
  CLUS_5              3               37
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB7C MUTATED       14      1      2
  ZBTB7C WILD-TYPE    203     74     97
D26V8, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1             14              203
  CLUS_2              1               74
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB7C MUTATED        8      2      6
  ZBTB7C WILD-TYPE    113    106     66
D26V9, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              8              113
  CLUS_2              2              106
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB7C MUTATED        4      1      2      0      9
  ZBTB7C WILD-TYPE     84     65     43     55     38
D26V10, multiclass
        clus
vv       ZBTB7C MUTATED ZBTB7C WILD-TYPE
  CLUS_1              4               84
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              9               38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = KLF3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF3 MUTATED        3     12      4      0
  KLF3 WILD-TYPE    201    125     43      3
D27V1, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            3            201
  CLUS_2           12            125
  CLUS_3            4             43
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLF3 MUTATED        1     11      3      2      1
  KLF3 WILD-TYPE     38     85     41     86     79
D27V2, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            1             38
  CLUS_2           11             85
  CLUS_3            3             41
  CLUS_4            2             86
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLF3 MUTATED        0      3      3      2      7
  KLF3 WILD-TYPE     26     76     70     80     51
D27V3, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            3             70
  CLUS_4            2             80
  CLUS_5            7             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF3 MUTATED        3      6      3      3
  KLF3 WILD-TYPE    124     45     68     66
D27V4, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            6             45
  CLUS_3            3             68
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLF3 MUTATED        2      7      7      2      1
  KLF3 WILD-TYPE     82     78     78     67     46
D27V5, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            7             78
  CLUS_3            7             78
  CLUS_4            2             67
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLF3 MUTATED        2      5      2     10
  KLF3 WILD-TYPE     93     69    119     70
D27V6, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            5             69
  CLUS_3            2            119
  CLUS_4           10             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLF3 MUTATED        2      4      5      7      1      0
  KLF3 WILD-TYPE     50     60     67     97     39     59
D27V7, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            4             60
  CLUS_3            5             67
  CLUS_4            7             97
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF3 MUTATED       12      2      5
  KLF3 WILD-TYPE    205     73     94
D27V8, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1           12            205
  CLUS_2            2             73
  CLUS_3            5             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLF3 MUTATED        7      6      5
  KLF3 WILD-TYPE    114    102     67
D27V9, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            7            114
  CLUS_2            6            102
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLF3 MUTATED        8      3      2      1      4
  KLF3 WILD-TYPE     80     63     43     54     43
D27V10, multiclass
        clus
vv       KLF3 MUTATED KLF3 WILD-TYPE
  CLUS_1            8             80
  CLUS_2            3             63
  CLUS_3            2             43
  CLUS_4            1             54
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = TENC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TENC1 MUTATED        3     12      5      0
  TENC1 WILD-TYPE    201    125     42      3
D28V1, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            12             125
  CLUS_3             5              42
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TENC1 MUTATED        2      9      2      2      1
  TENC1 WILD-TYPE     37     87     42     86     79
D28V2, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             9              87
  CLUS_3             2              42
  CLUS_4             2              86
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TENC1 MUTATED        2      6      6      1      3
  TENC1 WILD-TYPE     24     73     67     81     55
D28V3, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             6              73
  CLUS_3             6              67
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TENC1 MUTATED        4      8      5      1
  TENC1 WILD-TYPE    123     43     66     68
D28V4, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             8              43
  CLUS_3             5              66
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TENC1 MUTATED        2      4     10      1      3
  TENC1 WILD-TYPE     82     81     75     68     44
D28V5, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             4              81
  CLUS_3            10              75
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TENC1 MUTATED        3      5      1     11
  TENC1 WILD-TYPE     92     69    120     69
D28V6, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             5              69
  CLUS_3             1             120
  CLUS_4            11              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TENC1 MUTATED        3      5      3      4      2      2
  TENC1 WILD-TYPE     49     59     69    100     38     57
D28V7, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             5              59
  CLUS_3             3              69
  CLUS_4             4             100
  CLUS_5             2              38
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TENC1 MUTATED       13      1      5
  TENC1 WILD-TYPE    204     74     94
D28V8, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1            13             204
  CLUS_2             1              74
  CLUS_3             5              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TENC1 MUTATED        4      2      6
  TENC1 WILD-TYPE    117    106     66
D28V9, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             2             106
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TENC1 MUTATED        2      2      4      0      4
  TENC1 WILD-TYPE     86     64     41     55     43
D28V10, multiclass
        clus
vv       TENC1 MUTATED TENC1 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             2              64
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = MTG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTG1 MUTATED        0      8      0      0
  MTG1 WILD-TYPE    204    129     47      3
D29V1, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            8            129
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTG1 MUTATED        1      5      1      0      0
  MTG1 WILD-TYPE     38     91     43     88     80
D29V2, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            5             91
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTG1 MUTATED        0      3      3      0      2
  MTG1 WILD-TYPE     26     76     70     82     56
D29V3, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTG1 MUTATED        1      4      2      1
  MTG1 WILD-TYPE    126     47     69     68
D29V4, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            4             47
  CLUS_3            2             69
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTG1 MUTATED        0      3      3      1      1
  MTG1 WILD-TYPE     84     82     82     68     46
D29V5, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            3             82
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTG1 MUTATED        1      2      0      5
  MTG1 WILD-TYPE     94     72    121     75
D29V6, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MTG1 MUTATED        2      3      2      1      1      0
  MTG1 WILD-TYPE     50     61     70    103     39     59
D29V7, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            3             61
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTG1 MUTATED        6      1      2
  MTG1 WILD-TYPE    211     74     97
D29V8, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            6            211
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MTG1 MUTATED        4      1      1
  MTG1 WILD-TYPE    117    107     71
D29V9, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            1            107
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTG1 MUTATED        1      1      0      0      4
  MTG1 WILD-TYPE     87     65     45     55     43
D29V10, multiclass
        clus
vv       MTG1 MUTATED MTG1 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = LARP7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP7 MUTATED        5     12      1      0
  LARP7 WILD-TYPE    199    125     46      3
D30V1, multiclass
        clus
vv       LARP7 MUTATED LARP7 WILD-TYPE
  CLUS_1             5             199
  CLUS_2            12             125
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP7 MUTATED        1      9      1      2      2
  LARP7 WILD-TYPE     38     87     43     86     78
D30V2, multiclass
        clus
vv       LARP7 MUTATED LARP7 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             9              87
  CLUS_3             1              43
  CLUS_4             2              86
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP7 MUTATED        0      6      3      2      4
  LARP7 WILD-TYPE     26     73     70     80     54
D30V3, multiclass
        clus
vv       LARP7 MUTATED LARP7 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             6              73
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP7 MUTATED        2      7      4      2
  LARP7 WILD-TYPE    125     44     67     67
D30V4, multiclass
        clus
vv       LARP7 MUTATED LARP7 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             7              44
  CLUS_3             4              67
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP7 MUTATED        3      3      8      2      1
  LARP7 WILD-TYPE     81     82     77     67     46
D30V5, multiclass
        clus
vv       LARP7 MUTATED LARP7 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             3              82
  CLUS_3             8              77
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP7 MUTATED        4      2      3      8
  LARP7 WILD-TYPE     91     72    118     72
D30V6, multiclass
        clus
vv       LARP7 MUTATED LARP7 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             3             118
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LARP7 MUTATED        2      4      6      2      2      2
  LARP7 WILD-TYPE     50     60     66    102     38     57
D30V7, multiclass
        clus
vv       LARP7 MUTATED LARP7 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             4              60
  CLUS_3             6              66
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LARP7 MUTATED       12      2      4
  LARP7 WILD-TYPE    205     73     95
D30V8, multiclass
        clus
vv       LARP7 MUTATED LARP7 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             2              73
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LARP7 MUTATED        7      3      5
  LARP7 WILD-TYPE    114    105     67
D30V9, multiclass
        clus
vv       LARP7 MUTATED LARP7 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             3             105
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP7 MUTATED        5      1      1      3      5
  LARP7 WILD-TYPE     83     65     44     52     42
D30V10, multiclass
        clus
vv       LARP7 MUTATED LARP7 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             3              52
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = MVK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MVK MUTATED        2     11      2      0
  MVK WILD-TYPE    202    126     45      3
D31V1, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           2           202
  CLUS_2          11           126
  CLUS_3           2            45
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MVK MUTATED        0     10      1      0      0
  MVK WILD-TYPE     39     86     43     88     80
D31V2, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           0            39
  CLUS_2          10            86
  CLUS_3           1            43
  CLUS_4           0            88
  CLUS_5           0            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MVK MUTATED        0      7      4      0      1
  MVK WILD-TYPE     26     72     69     82     57
D31V3, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           0            26
  CLUS_2           7            72
  CLUS_3           4            69
  CLUS_4           0            82
  CLUS_5           1            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MVK MUTATED        1      9      2      0
  MVK WILD-TYPE    126     42     69     69
D31V4, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           1           126
  CLUS_2           9            42
  CLUS_3           2            69
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MVK MUTATED        0      2      8      1      2
  MVK WILD-TYPE     84     83     77     68     45
D31V5, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           0            84
  CLUS_2           2            83
  CLUS_3           8            77
  CLUS_4           1            68
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MVK MUTATED        3      1      1      8
  MVK WILD-TYPE     92     73    120     72
D31V6, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           3            92
  CLUS_2           1            73
  CLUS_3           1           120
  CLUS_4           8            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MVK MUTATED        4      4      5      1      1      0
  MVK WILD-TYPE     48     60     67    103     39     59
D31V7, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           4            48
  CLUS_2           4            60
  CLUS_3           5            67
  CLUS_4           1           103
  CLUS_5           1            39
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MVK MUTATED       12      1      2
  MVK WILD-TYPE    205     74     97
D31V8, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1          12           205
  CLUS_2           1            74
  CLUS_3           2            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MVK MUTATED        3      2      2
  MVK WILD-TYPE    118    106     70
D31V9, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           3           118
  CLUS_2           2           106
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MVK MUTATED        2      1      1      0      3
  MVK WILD-TYPE     86     65     44     55     44
D31V10, multiclass
        clus
vv       MVK MUTATED MVK WILD-TYPE
  CLUS_1           2            86
  CLUS_2           1            65
  CLUS_3           1            44
  CLUS_4           0            55
  CLUS_5           3            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = KIAA0406 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0406 MUTATED        4     17      2      0
  KIAA0406 WILD-TYPE    200    120     45      3
D32V1, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                4                200
  CLUS_2               17                120
  CLUS_3                2                 45
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0406 MUTATED        2     10      5      2      0
  KIAA0406 WILD-TYPE     37     86     39     86     80
D32V2, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                2                 37
  CLUS_2               10                 86
  CLUS_3                5                 39
  CLUS_4                2                 86
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0406 MUTATED        1      8      3      4      5
  KIAA0406 WILD-TYPE     25     71     70     78     53
D32V3, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                8                 71
  CLUS_3                3                 70
  CLUS_4                4                 78
  CLUS_5                5                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0406 MUTATED        4      8      5      4
  KIAA0406 WILD-TYPE    123     43     66     65
D32V4, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                4                123
  CLUS_2                8                 43
  CLUS_3                5                 66
  CLUS_4                4                 65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0406 MUTATED        3      5     10      3      1
  KIAA0406 WILD-TYPE     81     80     75     66     46
D32V5, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                3                 81
  CLUS_2                5                 80
  CLUS_3               10                 75
  CLUS_4                3                 66
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0406 MUTATED        5      4      5      8
  KIAA0406 WILD-TYPE     90     70    116     72
D32V6, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                5                 90
  CLUS_2                4                 70
  CLUS_3                5                116
  CLUS_4                8                 72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0406 MUTATED        3      7      5      4      2      2
  KIAA0406 WILD-TYPE     49     57     67    100     38     57
D32V7, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                7                 57
  CLUS_3                5                 67
  CLUS_4                4                100
  CLUS_5                2                 38
  CLUS_6                2                 57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0406 MUTATED       16      4      3
  KIAA0406 WILD-TYPE    201     71     96
D32V8, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1               16                201
  CLUS_2                4                 71
  CLUS_3                3                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0406 MUTATED        8      2      7
  KIAA0406 WILD-TYPE    113    106     65
D32V9, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                8                113
  CLUS_2                2                106
  CLUS_3                7                 65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0406 MUTATED        6      2      2      2      5
  KIAA0406 WILD-TYPE     82     64     43     53     42
D32V10, multiclass
        clus
vv       KIAA0406 MUTATED KIAA0406 WILD-TYPE
  CLUS_1                6                 82
  CLUS_2                2                 64
  CLUS_3                2                 43
  CLUS_4                2                 53
  CLUS_5                5                 42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = FRMD4A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMD4A MUTATED        5     14      1      0
  FRMD4A WILD-TYPE    199    123     46      3
D33V1, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              5              199
  CLUS_2             14              123
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FRMD4A MUTATED        2     15      1      0      1
  FRMD4A WILD-TYPE     37     81     43     88     79
D33V2, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              2               37
  CLUS_2             15               81
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FRMD4A MUTATED        2      5      4      1      4
  FRMD4A WILD-TYPE     24     74     69     81     54
D33V3, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              2               24
  CLUS_2              5               74
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMD4A MUTATED        5      7      3      1
  FRMD4A WILD-TYPE    122     44     68     68
D33V4, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              5              122
  CLUS_2              7               44
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FRMD4A MUTATED        1      2     12      4      2
  FRMD4A WILD-TYPE     83     83     73     65     45
D33V5, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3             12               73
  CLUS_4              4               65
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRMD4A MUTATED        4      3      2     12
  FRMD4A WILD-TYPE     91     71    119     68
D33V6, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              4               91
  CLUS_2              3               71
  CLUS_3              2              119
  CLUS_4             12               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FRMD4A MUTATED        8      5      3      3      1      1
  FRMD4A WILD-TYPE     44     59     69    101     39     58
D33V7, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              8               44
  CLUS_2              5               59
  CLUS_3              3               69
  CLUS_4              3              101
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FRMD4A MUTATED       17      2      2
  FRMD4A WILD-TYPE    200     73     97
D33V8, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1             17              200
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FRMD4A MUTATED        9      2      6
  FRMD4A WILD-TYPE    112    106     66
D33V9, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              9              112
  CLUS_2              2              106
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FRMD4A MUTATED        5      1      3      1      7
  FRMD4A WILD-TYPE     83     65     42     54     40
D33V10, multiclass
        clus
vv       FRMD4A MUTATED FRMD4A WILD-TYPE
  CLUS_1              5               83
  CLUS_2              1               65
  CLUS_3              3               42
  CLUS_4              1               54
  CLUS_5              7               40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = MCM8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM8 MUTATED       11     14      0      0
  MCM8 WILD-TYPE    193    123     47      3
D34V1, multiclass
        clus
vv       MCM8 MUTATED MCM8 WILD-TYPE
  CLUS_1           11            193
  CLUS_2           14            123
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MCM8 MUTATED        2      8      5      5      4
  MCM8 WILD-TYPE     37     88     39     83     76
D34V2, multiclass
        clus
vv       MCM8 MUTATED MCM8 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            8             88
  CLUS_3            5             39
  CLUS_4            5             83
  CLUS_5            4             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MCM8 MUTATED        0      8      4      3      6
  MCM8 WILD-TYPE     26     71     69     79     52
D34V3, multiclass
        clus
vv       MCM8 MUTATED MCM8 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            8             71
  CLUS_3            4             69
  CLUS_4            3             79
  CLUS_5            6             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM8 MUTATED        7      6      5      3
  MCM8 WILD-TYPE    120     45     66     66
D34V4, multiclass
        clus
vv       MCM8 MUTATED MCM8 WILD-TYPE
  CLUS_1            7            120
  CLUS_2            6             45
  CLUS_3            5             66
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MCM8 MUTATED        5      6      8      4      1
  MCM8 WILD-TYPE     79     79     77     65     46
D34V5, multiclass
        clus
vv       MCM8 MUTATED MCM8 WILD-TYPE
  CLUS_1            5             79
  CLUS_2            6             79
  CLUS_3            8             77
  CLUS_4            4             65
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM8 MUTATED        6      4      8      6
  MCM8 WILD-TYPE     89     70    113     74
D34V6, multiclass
        clus
vv       MCM8 MUTATED MCM8 WILD-TYPE
  CLUS_1            6             89
  CLUS_2            4             70
  CLUS_3            8            113
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MCM8 MUTATED        4      4      7      7      0      3
  MCM8 WILD-TYPE     48     60     65     97     40     56
D34V7, multiclass
        clus
vv       MCM8 MUTATED MCM8 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            4             60
  CLUS_3            7             65
  CLUS_4            7             97
  CLUS_5            0             40
  CLUS_6            3             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCM8 MUTATED       16      1      8
  MCM8 WILD-TYPE    201     74     91
D34V8, multiclass
        clus
vv       MCM8 MUTATED MCM8 WILD-TYPE
  CLUS_1           16            201
  CLUS_2            1             74
  CLUS_3            8             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCM8 MUTATED        8      9      5
  MCM8 WILD-TYPE    113     99     67
D34V9, multiclass
        clus
vv       MCM8 MUTATED MCM8 WILD-TYPE
  CLUS_1            8            113
  CLUS_2            9             99
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MCM8 MUTATED        6      2      2      7      5
  MCM8 WILD-TYPE     82     64     43     48     42
D34V10, multiclass
        clus
vv       MCM8 MUTATED MCM8 WILD-TYPE
  CLUS_1            6             82
  CLUS_2            2             64
  CLUS_3            2             43
  CLUS_4            7             48
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = APC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED       18     24      6      0
  APC WILD-TYPE    186    113     41      3
D35V1, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          18           186
  CLUS_2          24           113
  CLUS_3           6            41
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APC MUTATED        4     15      4     10      5
  APC WILD-TYPE     35     81     40     78     75
D35V2, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           4            35
  CLUS_2          15            81
  CLUS_3           4            40
  CLUS_4          10            78
  CLUS_5           5            75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APC MUTATED        4     13      9      4      8
  APC WILD-TYPE     22     66     64     78     50
D35V3, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           4            22
  CLUS_2          13            66
  CLUS_3           9            64
  CLUS_4           4            78
  CLUS_5           8            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED        7     16     10      5
  APC WILD-TYPE    120     35     61     64
D35V4, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           7           120
  CLUS_2          16            35
  CLUS_3          10            61
  CLUS_4           5            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APC MUTATED       12      7     16      5      5
  APC WILD-TYPE     72     78     69     64     42
D35V5, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          12            72
  CLUS_2           7            78
  CLUS_3          16            69
  CLUS_4           5            64
  CLUS_5           5            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APC MUTATED       11      4     12     18
  APC WILD-TYPE     84     70    109     62
D35V6, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          11            84
  CLUS_2           4            70
  CLUS_3          12           109
  CLUS_4          18            62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  APC MUTATED        8     16     12      2      2      7
  APC WILD-TYPE     44     48     60    102     38     52
D35V7, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1           8            44
  CLUS_2          16            48
  CLUS_3          12            60
  CLUS_4           2           102
  CLUS_5           2            38
  CLUS_6           7            52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED       30      4     13
  APC WILD-TYPE    187     71     86
D35V8, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          30           187
  CLUS_2           4            71
  CLUS_3          13            86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  APC MUTATED       19      3     11
  APC WILD-TYPE    102    105     61
D35V9, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          19           102
  CLUS_2           3           105
  CLUS_3          11            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APC MUTATED       10      2      7      7      7
  APC WILD-TYPE     78     64     38     48     40
D35V10, multiclass
        clus
vv       APC MUTATED APC WILD-TYPE
  CLUS_1          10            78
  CLUS_2           2            64
  CLUS_3           7            38
  CLUS_4           7            48
  CLUS_5           7            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = TRIP4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP4 MUTATED        2      9      1      0
  TRIP4 WILD-TYPE    202    128     46      3
D36V1, multiclass
        clus
vv       TRIP4 MUTATED TRIP4 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             9             128
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP4 MUTATED        1      4      2      1      1
  TRIP4 WILD-TYPE     38     92     42     87     79
D36V2, multiclass
        clus
vv       TRIP4 MUTATED TRIP4 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              92
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP4 MUTATED        1      4      2      1      3
  TRIP4 WILD-TYPE     25     75     71     81     55
D36V3, multiclass
        clus
vv       TRIP4 MUTATED TRIP4 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP4 MUTATED        4      2      4      1
  TRIP4 WILD-TYPE    123     49     67     68
D36V4, multiclass
        clus
vv       TRIP4 MUTATED TRIP4 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             2              49
  CLUS_3             4              67
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP4 MUTATED        1      2      5      2      2
  TRIP4 WILD-TYPE     83     83     80     67     45
D36V5, multiclass
        clus
vv       TRIP4 MUTATED TRIP4 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP4 MUTATED        5      2      1      4
  TRIP4 WILD-TYPE     90     72    120     76
D36V6, multiclass
        clus
vv       TRIP4 MUTATED TRIP4 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIP4 MUTATED        4      4      1      2      0      1
  TRIP4 WILD-TYPE     48     60     71    102     40     58
D36V7, multiclass
        clus
vv       TRIP4 MUTATED TRIP4 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             4              60
  CLUS_3             1              71
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRIP4 MUTATED        9      1      2
  TRIP4 WILD-TYPE    208     74     97
D36V8, multiclass
        clus
vv       TRIP4 MUTATED TRIP4 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRIP4 MUTATED        3      2      3
  TRIP4 WILD-TYPE    118    106     69
D36V9, multiclass
        clus
vv       TRIP4 MUTATED TRIP4 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP4 MUTATED        4      0      2      1      1
  TRIP4 WILD-TYPE     84     66     43     54     46
D36V10, multiclass
        clus
vv       TRIP4 MUTATED TRIP4 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = CTNND1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNND1 MUTATED        3     19      2      0
  CTNND1 WILD-TYPE    201    118     45      3
D37V1, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             19              118
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNND1 MUTATED        1     15      3      2      1
  CTNND1 WILD-TYPE     38     81     41     86     79
D37V2, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2             15               81
  CLUS_3              3               41
  CLUS_4              2               86
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNND1 MUTATED        1      6     10      3      3
  CTNND1 WILD-TYPE     25     73     63     79     55
D37V3, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              6               73
  CLUS_3             10               63
  CLUS_4              3               79
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNND1 MUTATED        5     10      5      3
  CTNND1 WILD-TYPE    122     41     66     66
D37V4, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              5              122
  CLUS_2             10               41
  CLUS_3              5               66
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNND1 MUTATED        1      4     12      1      4
  CTNND1 WILD-TYPE     83     81     73     68     43
D37V5, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              4               81
  CLUS_3             12               73
  CLUS_4              1               68
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNND1 MUTATED        6      2      3     11
  CTNND1 WILD-TYPE     89     72    118     69
D37V6, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              6               89
  CLUS_2              2               72
  CLUS_3              3              118
  CLUS_4             11               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTNND1 MUTATED        7      6      4      4      2      1
  CTNND1 WILD-TYPE     45     58     68    100     38     58
D37V7, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              7               45
  CLUS_2              6               58
  CLUS_3              4               68
  CLUS_4              4              100
  CLUS_5              2               38
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNND1 MUTATED       20      1      3
  CTNND1 WILD-TYPE    197     74     96
D37V8, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1             20              197
  CLUS_2              1               74
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNND1 MUTATED        7      5      7
  CTNND1 WILD-TYPE    114    103     65
D37V9, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              7              114
  CLUS_2              5              103
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNND1 MUTATED        8      1      3      2      5
  CTNND1 WILD-TYPE     80     65     42     53     42
D37V10, multiclass
        clus
vv       CTNND1 MUTATED CTNND1 WILD-TYPE
  CLUS_1              8               80
  CLUS_2              1               65
  CLUS_3              3               42
  CLUS_4              2               53
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = FAM9A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM9A MUTATED        1     10      1      0
  FAM9A WILD-TYPE    203    127     46      3
D38V1, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             1             203
  CLUS_2            10             127
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM9A MUTATED        0      5      1      1      1
  FAM9A WILD-TYPE     39     91     43     87     79
D38V2, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM9A MUTATED        2      4      2      3      1
  FAM9A WILD-TYPE     24     75     71     79     57
D38V3, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             2              24
  CLUS_2             4              75
  CLUS_3             2              71
  CLUS_4             3              79
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM9A MUTATED        3      4      3      2
  FAM9A WILD-TYPE    124     47     68     67
D38V4, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             3             124
  CLUS_2             4              47
  CLUS_3             3              68
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM9A MUTATED        2      2      5      0      2
  FAM9A WILD-TYPE     82     83     80     69     45
D38V5, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             2              82
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM9A MUTATED        2      2      2      5
  FAM9A WILD-TYPE     93     72    119     75
D38V6, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM9A MUTATED        2      5      2      1      1      1
  FAM9A WILD-TYPE     50     59     70    103     39     58
D38V7, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             2              50
  CLUS_2             5              59
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FAM9A MUTATED       11      0      1
  FAM9A WILD-TYPE    206     75     98
D38V8, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1            11             206
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FAM9A MUTATED        2      2      4
  FAM9A WILD-TYPE    119    106     68
D38V9, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             2             119
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM9A MUTATED        2      1      2      0      3
  FAM9A WILD-TYPE     86     65     43     55     44
D38V10, multiclass
        clus
vv       FAM9A MUTATED FAM9A WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = SLC27A3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A3 MUTATED        1      6      2      0
  SLC27A3 WILD-TYPE    203    131     45      3
D39V1, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               6               131
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC27A3 MUTATED        1      5      0      1      0
  SLC27A3 WILD-TYPE     38     91     44     87     80
D39V2, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               5                91
  CLUS_3               0                44
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC27A3 MUTATED        0      2      2      1      4
  SLC27A3 WILD-TYPE     26     77     71     81     54
D39V3, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               2                71
  CLUS_4               1                81
  CLUS_5               4                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A3 MUTATED        2      5      1      1
  SLC27A3 WILD-TYPE    125     46     70     68
D39V4, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               5                46
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC27A3 MUTATED        0      0      5      1      3
  SLC27A3 WILD-TYPE     84     85     80     68     44
D39V5, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               5                80
  CLUS_4               1                68
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC27A3 MUTATED        2      1      0      6
  SLC27A3 WILD-TYPE     93     73    121     74
D39V6, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC27A3 MUTATED        4      2      1      2      0      0
  SLC27A3 WILD-TYPE     48     62     71    102     40     59
D39V7, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               2                62
  CLUS_3               1                71
  CLUS_4               2               102
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC27A3 MUTATED        8      0      1
  SLC27A3 WILD-TYPE    209     75     98
D39V8, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               8               209
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC27A3 MUTATED        2      2      2
  SLC27A3 WILD-TYPE    119    106     70
D39V9, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               2               106
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC27A3 MUTATED        2      0      0      1      3
  SLC27A3 WILD-TYPE     86     66     45     54     44
D39V10, multiclass
        clus
vv       SLC27A3 MUTATED SLC27A3 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               1                54
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = PAX6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX6 MUTATED        7     12      1      0
  PAX6 WILD-TYPE    197    125     46      3
D40V1, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            7            197
  CLUS_2           12            125
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAX6 MUTATED        0     11      2      1      3
  PAX6 WILD-TYPE     39     85     42     87     77
D40V2, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            0             39
  CLUS_2           11             85
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAX6 MUTATED        1      8      4      1      3
  PAX6 WILD-TYPE     25     71     69     81     55
D40V3, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            8             71
  CLUS_3            4             69
  CLUS_4            1             81
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX6 MUTATED        5      9      3      0
  PAX6 WILD-TYPE    122     42     68     69
D40V4, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            5            122
  CLUS_2            9             42
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAX6 MUTATED        0      1      9      4      4
  PAX6 WILD-TYPE     84     84     76     65     43
D40V5, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            9             76
  CLUS_4            4             65
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX6 MUTATED        5      1      1     11
  PAX6 WILD-TYPE     90     73    120     69
D40V6, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            5             90
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4           11             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAX6 MUTATED        6      7      3      3      0      0
  PAX6 WILD-TYPE     46     57     69    101     40     59
D40V7, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            6             46
  CLUS_2            7             57
  CLUS_3            3             69
  CLUS_4            3            101
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX6 MUTATED       16      1      2
  PAX6 WILD-TYPE    201     74     97
D40V8, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1           16            201
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX6 MUTATED        7      3      3
  PAX6 WILD-TYPE    114    105     69
D40V9, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            7            114
  CLUS_2            3            105
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAX6 MUTATED        5      0      3      1      4
  PAX6 WILD-TYPE     83     66     42     54     43
D40V10, multiclass
        clus
vv       PAX6 MUTATED PAX6 WILD-TYPE
  CLUS_1            5             83
  CLUS_2            0             66
  CLUS_3            3             42
  CLUS_4            1             54
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = KRT75 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT75 MUTATED       15     18      3      1
  KRT75 WILD-TYPE    189    119     44      2
D41V1, multiclass
        clus
vv       KRT75 MUTATED KRT75 WILD-TYPE
  CLUS_1            15             189
  CLUS_2            18             119
  CLUS_3             3              44
  CLUS_4             1               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT75 MUTATED        2     10      7      6      9
  KRT75 WILD-TYPE     37     86     37     82     71
D41V2, multiclass
        clus
vv       KRT75 MUTATED KRT75 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            10              86
  CLUS_3             7              37
  CLUS_4             6              82
  CLUS_5             9              71
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT75 MUTATED        1      9      4      8      5
  KRT75 WILD-TYPE     25     70     69     74     53
D41V3, multiclass
        clus
vv       KRT75 MUTATED KRT75 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             9              70
  CLUS_3             4              69
  CLUS_4             8              74
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT75 MUTATED       11      5      6      5
  KRT75 WILD-TYPE    116     46     65     64
D41V4, multiclass
        clus
vv       KRT75 MUTATED KRT75 WILD-TYPE
  CLUS_1            11             116
  CLUS_2             5              46
  CLUS_3             6              65
  CLUS_4             5              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT75 MUTATED        6     10      9      7      3
  KRT75 WILD-TYPE     78     75     76     62     44
D41V5, multiclass
        clus
vv       KRT75 MUTATED KRT75 WILD-TYPE
  CLUS_1             6              78
  CLUS_2            10              75
  CLUS_3             9              76
  CLUS_4             7              62
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT75 MUTATED        8      9     10      8
  KRT75 WILD-TYPE     87     65    111     72
D41V6, multiclass
        clus
vv       KRT75 MUTATED KRT75 WILD-TYPE
  CLUS_1             8              87
  CLUS_2             9              65
  CLUS_3            10             111
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRT75 MUTATED        4      5     10     11      2      5
  KRT75 WILD-TYPE     48     59     62     93     38     54
D41V7, multiclass
        clus
vv       KRT75 MUTATED KRT75 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             5              59
  CLUS_3            10              62
  CLUS_4            11              93
  CLUS_5             2              38
  CLUS_6             5              54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT75 MUTATED       23      4     10
  KRT75 WILD-TYPE    194     71     89
D41V8, multiclass
        clus
vv       KRT75 MUTATED KRT75 WILD-TYPE
  CLUS_1            23             194
  CLUS_2             4              71
  CLUS_3            10              89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KRT75 MUTATED       11     11      3
  KRT75 WILD-TYPE    110     97     69
D41V9, multiclass
        clus
vv       KRT75 MUTATED KRT75 WILD-TYPE
  CLUS_1            11             110
  CLUS_2            11              97
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT75 MUTATED        6      4      1      9      5
  KRT75 WILD-TYPE     82     62     44     46     42
D41V10, multiclass
        clus
vv       KRT75 MUTATED KRT75 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             4              62
  CLUS_3             1              44
  CLUS_4             9              46
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = P4HTM MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P4HTM MUTATED       15      9      2      0
  P4HTM WILD-TYPE    189    128     45      3
D42V1, multiclass
        clus
vv       P4HTM MUTATED P4HTM WILD-TYPE
  CLUS_1            15             189
  CLUS_2             9             128
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P4HTM MUTATED        3      5      4      4      6
  P4HTM WILD-TYPE     36     91     40     84     74
D42V2, multiclass
        clus
vv       P4HTM MUTATED P4HTM WILD-TYPE
  CLUS_1             3              36
  CLUS_2             5              91
  CLUS_3             4              40
  CLUS_4             4              84
  CLUS_5             6              74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P4HTM MUTATED        1      9      2      6      3
  P4HTM WILD-TYPE     25     70     71     76     55
D42V3, multiclass
        clus
vv       P4HTM MUTATED P4HTM WILD-TYPE
  CLUS_1             1              25
  CLUS_2             9              70
  CLUS_3             2              71
  CLUS_4             6              76
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P4HTM MUTATED       10      4      4      3
  P4HTM WILD-TYPE    117     47     67     66
D42V4, multiclass
        clus
vv       P4HTM MUTATED P4HTM WILD-TYPE
  CLUS_1            10             117
  CLUS_2             4              47
  CLUS_3             4              67
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P4HTM MUTATED        6      4      7      6      2
  P4HTM WILD-TYPE     78     81     78     63     45
D42V5, multiclass
        clus
vv       P4HTM MUTATED P4HTM WILD-TYPE
  CLUS_1             6              78
  CLUS_2             4              81
  CLUS_3             7              78
  CLUS_4             6              63
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P4HTM MUTATED        7      5      8      5
  P4HTM WILD-TYPE     88     69    113     75
D42V6, multiclass
        clus
vv       P4HTM MUTATED P4HTM WILD-TYPE
  CLUS_1             7              88
  CLUS_2             5              69
  CLUS_3             8             113
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  P4HTM MUTATED        2      5      6      7      2      4
  P4HTM WILD-TYPE     50     59     66     97     38     55
D42V7, multiclass
        clus
vv       P4HTM MUTATED P4HTM WILD-TYPE
  CLUS_1             2              50
  CLUS_2             5              59
  CLUS_3             6              66
  CLUS_4             7              97
  CLUS_5             2              38
  CLUS_6             4              55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P4HTM MUTATED       15      3      8
  P4HTM WILD-TYPE    202     72     91
D42V8, multiclass
        clus
vv       P4HTM MUTATED P4HTM WILD-TYPE
  CLUS_1            15             202
  CLUS_2             3              72
  CLUS_3             8              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P4HTM MUTATED        7      7      3
  P4HTM WILD-TYPE    114    101     69
D42V9, multiclass
        clus
vv       P4HTM MUTATED P4HTM WILD-TYPE
  CLUS_1             7             114
  CLUS_2             7             101
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P4HTM MUTATED        6      2      2      6      1
  P4HTM WILD-TYPE     82     64     43     49     46
D42V10, multiclass
        clus
vv       P4HTM MUTATED P4HTM WILD-TYPE
  CLUS_1             6              82
  CLUS_2             2              64
  CLUS_3             2              43
  CLUS_4             6              49
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = DSTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSTN MUTATED        2      4      0      0
  DSTN WILD-TYPE    202    133     47      3
D43V1, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            2            202
  CLUS_2            4            133
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DSTN MUTATED        0      5      0      0      1
  DSTN WILD-TYPE     39     91     44     88     79
D43V2, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            0             39
  CLUS_2            5             91
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DSTN MUTATED        0      1      1      2      1
  DSTN WILD-TYPE     26     78     72     80     57
D43V3, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            1             72
  CLUS_4            2             80
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSTN MUTATED        0      2      2      1
  DSTN WILD-TYPE    127     49     69     68
D43V4, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            0            127
  CLUS_2            2             49
  CLUS_3            2             69
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DSTN MUTATED        0      2      2      1      1
  DSTN WILD-TYPE     84     83     83     68     46
D43V5, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            2             83
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DSTN MUTATED        1      2      0      3
  DSTN WILD-TYPE     94     72    121     77
D43V6, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            1             94
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DSTN MUTATED        4      2      0      1      0      0
  DSTN WILD-TYPE     48     62     72    103     40     59
D43V7, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            4             48
  CLUS_2            2             62
  CLUS_3            0             72
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSTN MUTATED        7      0      0
  DSTN WILD-TYPE    210     75     99
D43V8, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            7            210
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DSTN MUTATED        3      1      1
  DSTN WILD-TYPE    118    107     71
D43V9, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            3            118
  CLUS_2            1            107
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DSTN MUTATED        0      1      1      0      3
  DSTN WILD-TYPE     88     65     44     55     44
D43V10, multiclass
        clus
vv       DSTN MUTATED DSTN WILD-TYPE
  CLUS_1            0             88
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = CIC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED       15     29      3      0
  CIC WILD-TYPE    189    108     44      3
D44V1, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          15           189
  CLUS_2          29           108
  CLUS_3           3            44
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIC MUTATED        5     20      5      5      7
  CIC WILD-TYPE     34     76     39     83     73
D44V2, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           5            34
  CLUS_2          20            76
  CLUS_3           5            39
  CLUS_4           5            83
  CLUS_5           7            73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIC MUTATED        1     11      8      7     10
  CIC WILD-TYPE     25     68     65     75     48
D44V3, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           1            25
  CLUS_2          11            68
  CLUS_3           8            65
  CLUS_4           7            75
  CLUS_5          10            48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        7     12     13      5
  CIC WILD-TYPE    120     39     58     64
D44V4, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           7           120
  CLUS_2          12            39
  CLUS_3          13            58
  CLUS_4           5            64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIC MUTATED        5      9     19      7      4
  CIC WILD-TYPE     79     76     66     62     43
D44V5, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           5            79
  CLUS_2           9            76
  CLUS_3          19            66
  CLUS_4           7            62
  CLUS_5           4            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIC MUTATED        8     11      8     17
  CIC WILD-TYPE     87     63    113     63
D44V6, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           8            87
  CLUS_2          11            63
  CLUS_3           8           113
  CLUS_4          17            63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CIC MUTATED        8     10     10     14      2      3
  CIC WILD-TYPE     44     54     62     90     38     56
D44V7, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           8            44
  CLUS_2          10            54
  CLUS_3          10            62
  CLUS_4          14            90
  CLUS_5           2            38
  CLUS_6           3            56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED       32      7      8
  CIC WILD-TYPE    185     68     91
D44V8, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          32           185
  CLUS_2           7            68
  CLUS_3           8            91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CIC MUTATED       13      9      8
  CIC WILD-TYPE    108     99     64
D44V9, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1          13           108
  CLUS_2           9            99
  CLUS_3           8            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIC MUTATED        6      4      3      6     11
  CIC WILD-TYPE     82     62     42     49     36
D44V10, multiclass
        clus
vv       CIC MUTATED CIC WILD-TYPE
  CLUS_1           6            82
  CLUS_2           4            62
  CLUS_3           3            42
  CLUS_4           6            49
  CLUS_5          11            36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = OSBP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBP2 MUTATED        2     10      3      0
  OSBP2 WILD-TYPE    202    127     44      3
D45V1, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            10             127
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBP2 MUTATED        3      8      1      0      0
  OSBP2 WILD-TYPE     36     88     43     88     80
D45V2, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             8              88
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBP2 MUTATED        1      4      3      1      4
  OSBP2 WILD-TYPE     25     75     70     81     54
D45V3, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBP2 MUTATED        2      7      3      1
  OSBP2 WILD-TYPE    125     44     68     68
D45V4, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             7              44
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBP2 MUTATED        1      1      7      3      3
  OSBP2 WILD-TYPE     83     84     78     66     44
D45V5, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             7              78
  CLUS_4             3              66
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBP2 MUTATED        4      2      1      8
  OSBP2 WILD-TYPE     91     72    120     72
D45V6, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OSBP2 MUTATED        5      6      2      0      2      0
  OSBP2 WILD-TYPE     47     58     70    104     38     59
D45V7, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             6              58
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OSBP2 MUTATED       14      0      1
  OSBP2 WILD-TYPE    203     75     98
D45V8, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OSBP2 MUTATED        7      1      3
  OSBP2 WILD-TYPE    114    107     69
D45V9, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBP2 MUTATED        4      0      3      0      4
  OSBP2 WILD-TYPE     84     66     42     55     43
D45V10, multiclass
        clus
vv       OSBP2 MUTATED OSBP2 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = CEP57 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP57 MUTATED        1     10      2      0
  CEP57 WILD-TYPE    203    127     45      3
D46V1, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            10             127
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP57 MUTATED        1      6      0      0      1
  CEP57 WILD-TYPE     38     90     44     88     79
D46V2, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP57 MUTATED        2      5      1      1      3
  CEP57 WILD-TYPE     24     74     72     81     55
D46V3, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             5              74
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP57 MUTATED        3      4      4      1
  CEP57 WILD-TYPE    124     47     67     68
D46V4, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             4              47
  CLUS_3             4              67
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP57 MUTATED        1      2      5      1      3
  CEP57 WILD-TYPE     83     83     80     68     44
D46V5, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP57 MUTATED        3      1      1      7
  CEP57 WILD-TYPE     92     73    120     73
D46V6, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEP57 MUTATED        2      6      2      1      1      1
  CEP57 WILD-TYPE     50     58     70    103     39     58
D46V7, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             6              58
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CEP57 MUTATED       10      1      2
  CEP57 WILD-TYPE    207     74     97
D46V8, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CEP57 MUTATED        3      1      3
  CEP57 WILD-TYPE    118    107     69
D46V9, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP57 MUTATED        3      0      2      0      2
  CEP57 WILD-TYPE     85     66     43     55     45
D46V10, multiclass
        clus
vv       CEP57 MUTATED CEP57 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = PRRG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG1 MUTATED        0      9      1      0
  PRRG1 WILD-TYPE    204    128     46      3
D47V1, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             9             128
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRRG1 MUTATED        0      5      2      0      0
  PRRG1 WILD-TYPE     39     91     42     88     80
D47V2, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRRG1 MUTATED        1      0      1      1      5
  PRRG1 WILD-TYPE     25     79     72     81     53
D47V3, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              79
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG1 MUTATED        1      5      0      2
  PRRG1 WILD-TYPE    126     46     71     67
D47V4, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             5              46
  CLUS_3             0              71
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRRG1 MUTATED        0      4      5      1      0
  PRRG1 WILD-TYPE     84     81     80     68     47
D47V5, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             4              81
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG1 MUTATED        2      2      0      6
  PRRG1 WILD-TYPE     93     72    121     74
D47V6, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRRG1 MUTATED        1      6      2      0      1      0
  PRRG1 WILD-TYPE     51     58     70    104     39     59
D47V7, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             6              58
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRG1 MUTATED        9      0      1
  PRRG1 WILD-TYPE    208     75     98
D47V8, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRG1 MUTATED        3      1      3
  PRRG1 WILD-TYPE    118    107     69
D47V9, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRRG1 MUTATED        3      0      1      0      3
  PRRG1 WILD-TYPE     85     66     44     55     44
D47V10, multiclass
        clus
vv       PRRG1 MUTATED PRRG1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = BCOR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCOR MUTATED        2     23      2      1
  BCOR WILD-TYPE    202    114     45      2
D48V1, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            2            202
  CLUS_2           23            114
  CLUS_3            2             45
  CLUS_4            1              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCOR MUTATED        1     11      7      1      2
  BCOR WILD-TYPE     38     85     37     87     78
D48V2, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            1             38
  CLUS_2           11             85
  CLUS_3            7             37
  CLUS_4            1             87
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCOR MUTATED        1      9      4      1      9
  BCOR WILD-TYPE     25     70     69     81     49
D48V3, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            1             25
  CLUS_2            9             70
  CLUS_3            4             69
  CLUS_4            1             81
  CLUS_5            9             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCOR MUTATED        8     12      3      1
  BCOR WILD-TYPE    119     39     68     68
D48V4, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            8            119
  CLUS_2           12             39
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCOR MUTATED        1      5     12      4      3
  BCOR WILD-TYPE     83     80     73     65     44
D48V5, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            1             83
  CLUS_2            5             80
  CLUS_3           12             73
  CLUS_4            4             65
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCOR MUTATED        4      4      7     10
  BCOR WILD-TYPE     91     70    114     70
D48V6, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            4             91
  CLUS_2            4             70
  CLUS_3            7            114
  CLUS_4           10             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCOR MUTATED        4     12      5      6      0      1
  BCOR WILD-TYPE     48     52     67     98     40     58
D48V7, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            4             48
  CLUS_2           12             52
  CLUS_3            5             67
  CLUS_4            6             98
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCOR MUTATED       22      4      2
  BCOR WILD-TYPE    195     71     97
D48V8, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1           22            195
  CLUS_2            4             71
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BCOR MUTATED        9      4      7
  BCOR WILD-TYPE    112    104     65
D48V9, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            9            112
  CLUS_2            4            104
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCOR MUTATED        4      4      6      1      5
  BCOR WILD-TYPE     84     62     39     54     42
D48V10, multiclass
        clus
vv       BCOR MUTATED BCOR WILD-TYPE
  CLUS_1            4             84
  CLUS_2            4             62
  CLUS_3            6             39
  CLUS_4            1             54
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = KIAA1967 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1967 MUTATED        2     18      2      0
  KIAA1967 WILD-TYPE    202    119     45      3
D49V1, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                2                202
  CLUS_2               18                119
  CLUS_3                2                 45
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1967 MUTATED        0     14      2      1      0
  KIAA1967 WILD-TYPE     39     82     42     87     80
D49V2, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2               14                 82
  CLUS_3                2                 42
  CLUS_4                1                 87
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1967 MUTATED        0     10      5      2      3
  KIAA1967 WILD-TYPE     26     69     68     80     55
D49V3, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2               10                 69
  CLUS_3                5                 68
  CLUS_4                2                 80
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1967 MUTATED        3      8      7      2
  KIAA1967 WILD-TYPE    124     43     64     67
D49V4, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                3                124
  CLUS_2                8                 43
  CLUS_3                7                 64
  CLUS_4                2                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1967 MUTATED        0      2     14      1      3
  KIAA1967 WILD-TYPE     84     83     71     68     44
D49V5, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                2                 83
  CLUS_3               14                 71
  CLUS_4                1                 68
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1967 MUTATED        5      4      0     11
  KIAA1967 WILD-TYPE     90     70    121     69
D49V6, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                5                 90
  CLUS_2                4                 70
  CLUS_3                0                121
  CLUS_4               11                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1967 MUTATED        4      8      6      3      1      0
  KIAA1967 WILD-TYPE     48     56     66    101     39     59
D49V7, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                8                 56
  CLUS_3                6                 66
  CLUS_4                3                101
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1967 MUTATED       18      2      2
  KIAA1967 WILD-TYPE    199     73     97
D49V8, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1               18                199
  CLUS_2                2                 73
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1967 MUTATED        7      2      5
  KIAA1967 WILD-TYPE    114    106     67
D49V9, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                7                114
  CLUS_2                2                106
  CLUS_3                5                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1967 MUTATED        5      1      3      1      4
  KIAA1967 WILD-TYPE     83     65     42     54     43
D49V10, multiclass
        clus
vv       KIAA1967 MUTATED KIAA1967 WILD-TYPE
  CLUS_1                5                 83
  CLUS_2                1                 65
  CLUS_3                3                 42
  CLUS_4                1                 54
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = KIAA1267 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1267 MUTATED        1     17      1      0
  KIAA1267 WILD-TYPE    203    120     46      3
D50V1, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                1                203
  CLUS_2               17                120
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1267 MUTATED        0      8      2      1      2
  KIAA1267 WILD-TYPE     39     88     42     87     78
D50V2, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                8                 88
  CLUS_3                2                 42
  CLUS_4                1                 87
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1267 MUTATED        1      8      5      1      2
  KIAA1267 WILD-TYPE     25     71     68     81     56
D50V3, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                8                 71
  CLUS_3                5                 68
  CLUS_4                1                 81
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1267 MUTATED        2      9      4      2
  KIAA1267 WILD-TYPE    125     42     67     67
D50V4, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                9                 42
  CLUS_3                4                 67
  CLUS_4                2                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1267 MUTATED        1      4     11      0      2
  KIAA1267 WILD-TYPE     83     81     74     69     45
D50V5, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                4                 81
  CLUS_3               11                 74
  CLUS_4                0                 69
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1267 MUTATED        2      7      0      9
  KIAA1267 WILD-TYPE     93     67    121     71
D50V6, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                7                 67
  CLUS_3                0                121
  CLUS_4                9                 71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1267 MUTATED        6      7      1      4      0      1
  KIAA1267 WILD-TYPE     46     57     71    100     40     58
D50V7, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                6                 46
  CLUS_2                7                 57
  CLUS_3                1                 71
  CLUS_4                4                100
  CLUS_5                0                 40
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1267 MUTATED       16      1      2
  KIAA1267 WILD-TYPE    201     74     97
D50V8, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1               16                201
  CLUS_2                1                 74
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1267 MUTATED        6      4      3
  KIAA1267 WILD-TYPE    115    104     69
D50V9, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                6                115
  CLUS_2                4                104
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1267 MUTATED        6      1      1      1      4
  KIAA1267 WILD-TYPE     82     65     44     54     43
D50V10, multiclass
        clus
vv       KIAA1267 MUTATED KIAA1267 WILD-TYPE
  CLUS_1                6                 82
  CLUS_2                1                 65
  CLUS_3                1                 44
  CLUS_4                1                 54
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = ZNF48 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF48 MUTATED        1     12      0      0
  ZNF48 WILD-TYPE    203    125     47      3
D51V1, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            12             125
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF48 MUTATED        1      7      3      0      0
  ZNF48 WILD-TYPE     38     89     41     88     80
D51V2, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             7              89
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF48 MUTATED        0      3      5      0      3
  ZNF48 WILD-TYPE     26     76     68     82     55
D51V3, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             5              68
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF48 MUTATED        1      6      2      2
  ZNF48 WILD-TYPE    126     45     69     67
D51V4, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             6              45
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF48 MUTATED        1      4      5      1      2
  ZNF48 WILD-TYPE     83     81     80     68     45
D51V5, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             4              81
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF48 MUTATED        4      2      1      6
  ZNF48 WILD-TYPE     91     72    120     74
D51V6, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF48 MUTATED        3      5      2      2      1      0
  ZNF48 WILD-TYPE     49     59     70    102     39     59
D51V7, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             5              59
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF48 MUTATED       10      2      1
  ZNF48 WILD-TYPE    207     73     98
D51V8, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF48 MUTATED        4      2      3
  ZNF48 WILD-TYPE    117    106     69
D51V9, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             2             106
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF48 MUTATED        2      1      2      0      4
  ZNF48 WILD-TYPE     86     65     43     55     43
D51V10, multiclass
        clus
vv       ZNF48 MUTATED ZNF48 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = WASF3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WASF3 MUTATED        4     14      1      0
  WASF3 WILD-TYPE    200    123     46      3
D52V1, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            14             123
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WASF3 MUTATED        0     12      4      1      0
  WASF3 WILD-TYPE     39     84     40     87     80
D52V2, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2            12              84
  CLUS_3             4              40
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WASF3 MUTATED        0      7      6      2      2
  WASF3 WILD-TYPE     26     72     67     80     56
D52V3, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             7              72
  CLUS_3             6              67
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WASF3 MUTATED        3      9      3      2
  WASF3 WILD-TYPE    124     42     68     67
D52V4, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             9              42
  CLUS_3             3              68
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WASF3 MUTATED        1      2     10      2      2
  WASF3 WILD-TYPE     83     83     75     67     45
D52V5, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3            10              75
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WASF3 MUTATED        3      3      3      8
  WASF3 WILD-TYPE     92     71    118     72
D52V6, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             3              71
  CLUS_3             3             118
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WASF3 MUTATED        7      5      3      2      1      1
  WASF3 WILD-TYPE     45     59     69    102     39     58
D52V7, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             7              45
  CLUS_2             5              59
  CLUS_3             3              69
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WASF3 MUTATED       14      2      3
  WASF3 WILD-TYPE    203     73     96
D52V8, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             2              73
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WASF3 MUTATED        6      3      6
  WASF3 WILD-TYPE    115    105     66
D52V9, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             3             105
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WASF3 MUTATED        6      2      3      1      3
  WASF3 WILD-TYPE     82     64     42     54     44
D52V10, multiclass
        clus
vv       WASF3 MUTATED WASF3 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             2              64
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = NLK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLK MUTATED        2     11      1      0
  NLK WILD-TYPE    202    126     46      3
D53V1, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           2           202
  CLUS_2          11           126
  CLUS_3           1            46
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLK MUTATED        0      7      1      2      0
  NLK WILD-TYPE     39     89     43     86     80
D53V2, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           0            39
  CLUS_2           7            89
  CLUS_3           1            43
  CLUS_4           2            86
  CLUS_5           0            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLK MUTATED        1      2      4      1      4
  NLK WILD-TYPE     25     77     69     81     54
D53V3, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           1            25
  CLUS_2           2            77
  CLUS_3           4            69
  CLUS_4           1            81
  CLUS_5           4            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLK MUTATED        4      7      0      1
  NLK WILD-TYPE    123     44     71     68
D53V4, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           4           123
  CLUS_2           7            44
  CLUS_3           0            71
  CLUS_4           1            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLK MUTATED        3      2      4      2      1
  NLK WILD-TYPE     81     83     81     67     46
D53V5, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           3            81
  CLUS_2           2            83
  CLUS_3           4            81
  CLUS_4           2            67
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLK MUTATED        4      1      2      5
  NLK WILD-TYPE     91     73    119     75
D53V6, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           4            91
  CLUS_2           1            73
  CLUS_3           2           119
  CLUS_4           5            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NLK MUTATED        2      5      3      2      0      2
  NLK WILD-TYPE     50     59     69    102     40     57
D53V7, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           2            50
  CLUS_2           5            59
  CLUS_3           3            69
  CLUS_4           2           102
  CLUS_5           0            40
  CLUS_6           2            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NLK MUTATED       12      0      2
  NLK WILD-TYPE    205     75     97
D53V8, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1          12           205
  CLUS_2           0            75
  CLUS_3           2            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NLK MUTATED        3      1      6
  NLK WILD-TYPE    118    107     66
D53V9, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           3           118
  CLUS_2           1           107
  CLUS_3           6            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLK MUTATED        2      1      1      1      5
  NLK WILD-TYPE     86     65     44     54     42
D53V10, multiclass
        clus
vv       NLK MUTATED NLK WILD-TYPE
  CLUS_1           2            86
  CLUS_2           1            65
  CLUS_3           1            44
  CLUS_4           1            54
  CLUS_5           5            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = CYP27B1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP27B1 MUTATED        2      5      2      0
  CYP27B1 WILD-TYPE    202    132     45      3
D54V1, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               5               132
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP27B1 MUTATED        2      4      1      1      0
  CYP27B1 WILD-TYPE     37     92     43     87     80
D54V2, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               2                37
  CLUS_2               4                92
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP27B1 MUTATED        0      4      1      2      2
  CYP27B1 WILD-TYPE     26     75     72     80     56
D54V3, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               4                75
  CLUS_3               1                72
  CLUS_4               2                80
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP27B1 MUTATED        0      4      3      2
  CYP27B1 WILD-TYPE    127     47     68     67
D54V4, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               4                47
  CLUS_3               3                68
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP27B1 MUTATED        0      0      5      1      0
  CYP27B1 WILD-TYPE     84     85     80     68     47
D54V5, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               5                80
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP27B1 MUTATED        2      2      0      2
  CYP27B1 WILD-TYPE     93     72    121     78
D54V6, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               2                72
  CLUS_3               0               121
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CYP27B1 MUTATED        1      2      2      2      2      0
  CYP27B1 WILD-TYPE     51     62     70    102     38     59
D54V7, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               2                62
  CLUS_3               2                70
  CLUS_4               2               102
  CLUS_5               2                38
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP27B1 MUTATED        6      2      1
  CYP27B1 WILD-TYPE    211     73     98
D54V8, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               2                73
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CYP27B1 MUTATED        2      1      5
  CYP27B1 WILD-TYPE    119    107     67
D54V9, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               1               107
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP27B1 MUTATED        2      1      1      1      3
  CYP27B1 WILD-TYPE     86     65     44     54     44
D54V10, multiclass
        clus
vv       CYP27B1 MUTATED CYP27B1 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               1                65
  CLUS_3               1                44
  CLUS_4               1                54
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = C14ORF43 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF43 MUTATED        3     21      2      0
  C14ORF43 WILD-TYPE    201    116     45      3
D55V1, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                3                201
  CLUS_2               21                116
  CLUS_3                2                 45
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF43 MUTATED        2     15      2      1      2
  C14ORF43 WILD-TYPE     37     81     42     87     78
D55V2, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                2                 37
  CLUS_2               15                 81
  CLUS_3                2                 42
  CLUS_4                1                 87
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF43 MUTATED        1      7      6      2      6
  C14ORF43 WILD-TYPE     25     72     67     80     52
D55V3, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                7                 72
  CLUS_3                6                 67
  CLUS_4                2                 80
  CLUS_5                6                 52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF43 MUTATED        3     13      3      3
  C14ORF43 WILD-TYPE    124     38     68     66
D55V4, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                3                124
  CLUS_2               13                 38
  CLUS_3                3                 68
  CLUS_4                3                 66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF43 MUTATED        1      3     13      3      4
  C14ORF43 WILD-TYPE     83     82     72     66     43
D55V5, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                3                 82
  CLUS_3               13                 72
  CLUS_4                3                 66
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF43 MUTATED        6      4      2     12
  C14ORF43 WILD-TYPE     89     70    119     68
D55V6, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                6                 89
  CLUS_2                4                 70
  CLUS_3                2                119
  CLUS_4               12                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C14ORF43 MUTATED        8      6      5      5      1      1
  C14ORF43 WILD-TYPE     44     58     67     99     39     58
D55V7, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                8                 44
  CLUS_2                6                 58
  CLUS_3                5                 67
  CLUS_4                5                 99
  CLUS_5                1                 39
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED       21      4      1
  C14ORF43 WILD-TYPE    196     71     98
D55V8, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1               21                196
  CLUS_2                4                 71
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF43 MUTATED       11      2      6
  C14ORF43 WILD-TYPE    110    106     66
D55V9, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1               11                110
  CLUS_2                2                106
  CLUS_3                6                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF43 MUTATED        4      3      2      0     10
  C14ORF43 WILD-TYPE     84     63     43     55     37
D55V10, multiclass
        clus
vv       C14ORF43 MUTATED C14ORF43 WILD-TYPE
  CLUS_1                4                 84
  CLUS_2                3                 63
  CLUS_3                2                 43
  CLUS_4                0                 55
  CLUS_5               10                 37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = PRSS36 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS36 MUTATED        2     12      2      0
  PRSS36 WILD-TYPE    202    125     45      3
D56V1, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              2              202
  CLUS_2             12              125
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRSS36 MUTATED        0      7      3      1      0
  PRSS36 WILD-TYPE     39     89     41     87     80
D56V2, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              7               89
  CLUS_3              3               41
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRSS36 MUTATED        1      5      3      2      4
  PRSS36 WILD-TYPE     25     74     70     80     54
D56V3, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              5               74
  CLUS_3              3               70
  CLUS_4              2               80
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS36 MUTATED        3      5      3      4
  PRSS36 WILD-TYPE    124     46     68     65
D56V4, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              5               46
  CLUS_3              3               68
  CLUS_4              4               65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRSS36 MUTATED        0      3      6      3      3
  PRSS36 WILD-TYPE     84     82     79     66     44
D56V5, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3              6               79
  CLUS_4              3               66
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRSS36 MUTATED        4      5      0      6
  PRSS36 WILD-TYPE     91     69    121     74
D56V6, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              5               69
  CLUS_3              0              121
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRSS36 MUTATED        1      8      1      3      3      0
  PRSS36 WILD-TYPE     51     56     71    101     37     59
D56V7, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              8               56
  CLUS_3              1               71
  CLUS_4              3              101
  CLUS_5              3               37
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRSS36 MUTATED       10      4      2
  PRSS36 WILD-TYPE    207     71     97
D56V8, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1             10              207
  CLUS_2              4               71
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRSS36 MUTATED        5      1      5
  PRSS36 WILD-TYPE    116    107     67
D56V9, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              1              107
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRSS36 MUTATED        4      2      3      0      2
  PRSS36 WILD-TYPE     84     64     42     55     45
D56V10, multiclass
        clus
vv       PRSS36 MUTATED PRSS36 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              2               64
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = FZD3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD3 MUTATED        1      9      1      0
  FZD3 WILD-TYPE    203    128     46      3
D57V1, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            9            128
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FZD3 MUTATED        0      7      2      0      1
  FZD3 WILD-TYPE     39     89     42     88     79
D57V2, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            7             89
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FZD3 MUTATED        0      4      1      2      2
  FZD3 WILD-TYPE     26     75     72     80     56
D57V3, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            1             72
  CLUS_4            2             80
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD3 MUTATED        2      4      2      1
  FZD3 WILD-TYPE    125     47     69     68
D57V4, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            4             47
  CLUS_3            2             69
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FZD3 MUTATED        0      3      4      0      2
  FZD3 WILD-TYPE     84     82     81     69     45
D57V5, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            4             81
  CLUS_4            0             69
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FZD3 MUTATED        1      1      2      5
  FZD3 WILD-TYPE     94     73    119     75
D57V6, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FZD3 MUTATED        2      4      2      1      2      0
  FZD3 WILD-TYPE     50     60     70    103     38     59
D57V7, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            4             60
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD3 MUTATED        8      2      1
  FZD3 WILD-TYPE    209     73     98
D57V8, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            8            209
  CLUS_2            2             73
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FZD3 MUTATED        3      2      5
  FZD3 WILD-TYPE    118    106     67
D57V9, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            2            106
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FZD3 MUTATED        4      0      2      0      4
  FZD3 WILD-TYPE     84     66     43     55     43
D57V10, multiclass
        clus
vv       FZD3 MUTATED FZD3 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = NFASC MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFASC MUTATED        6     20      4      0
  NFASC WILD-TYPE    198    117     43      3
D58V1, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             6             198
  CLUS_2            20             117
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFASC MUTATED        1     13      6      2      3
  NFASC WILD-TYPE     38     83     38     86     77
D58V2, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             1              38
  CLUS_2            13              83
  CLUS_3             6              38
  CLUS_4             2              86
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFASC MUTATED        1      9      4      0      9
  NFASC WILD-TYPE     25     70     69     82     49
D58V3, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             1              25
  CLUS_2             9              70
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             9              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFASC MUTATED        5     10      7      1
  NFASC WILD-TYPE    122     41     64     68
D58V4, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             5             122
  CLUS_2            10              41
  CLUS_3             7              64
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFASC MUTATED        1      3     17      6      3
  NFASC WILD-TYPE     83     82     68     63     44
D58V5, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3            17              68
  CLUS_4             6              63
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFASC MUTATED        9      2      5     14
  NFASC WILD-TYPE     86     72    116     66
D58V6, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             9              86
  CLUS_2             2              72
  CLUS_3             5             116
  CLUS_4            14              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NFASC MUTATED       10     11      6      2      0      2
  NFASC WILD-TYPE     42     53     66    102     40     57
D58V7, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1            10              42
  CLUS_2            11              53
  CLUS_3             6              66
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFASC MUTATED       27      1      3
  NFASC WILD-TYPE    190     74     96
D58V8, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1            27             190
  CLUS_2             1              74
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFASC MUTATED       14      4      4
  NFASC WILD-TYPE    107    104     68
D58V9, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1            14             107
  CLUS_2             4             104
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFASC MUTATED        8      1      4      1      8
  NFASC WILD-TYPE     80     65     41     54     39
D58V10, multiclass
        clus
vv       NFASC MUTATED NFASC WILD-TYPE
  CLUS_1             8              80
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             1              54
  CLUS_5             8              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = GRK4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRK4 MUTATED        2      8      0      0
  GRK4 WILD-TYPE    202    129     47      3
D59V1, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            2            202
  CLUS_2            8            129
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRK4 MUTATED        1      6      1      0      1
  GRK4 WILD-TYPE     38     90     43     88     79
D59V2, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            6             90
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRK4 MUTATED        1      6      2      0      0
  GRK4 WILD-TYPE     25     73     71     82     58
D59V3, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            6             73
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRK4 MUTATED        1      8      0      0
  GRK4 WILD-TYPE    126     43     71     69
D59V4, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            8             43
  CLUS_3            0             71
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRK4 MUTATED        1      0      8      0      0
  GRK4 WILD-TYPE     83     85     77     69     47
D59V5, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            0             85
  CLUS_3            8             77
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRK4 MUTATED        1      1      2      5
  GRK4 WILD-TYPE     94     73    119     75
D59V6, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GRK4 MUTATED        3      5      2      0      1      0
  GRK4 WILD-TYPE     49     59     70    104     39     59
D59V7, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            5             59
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRK4 MUTATED       11      0      0
  GRK4 WILD-TYPE    206     75     99
D59V8, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1           11            206
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GRK4 MUTATED        5      0      4
  GRK4 WILD-TYPE    116    108     68
D59V9, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            0            108
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRK4 MUTATED        1      0      3      0      5
  GRK4 WILD-TYPE     87     66     42     55     42
D59V10, multiclass
        clus
vv       GRK4 MUTATED GRK4 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = ATXN2L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN2L MUTATED        4     16      2      0
  ATXN2L WILD-TYPE    200    121     45      3
D60V1, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              4              200
  CLUS_2             16              121
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATXN2L MUTATED        1     15      1      1      0
  ATXN2L WILD-TYPE     38     81     43     87     80
D60V2, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              1               38
  CLUS_2             15               81
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATXN2L MUTATED        1      5      7      3      3
  ATXN2L WILD-TYPE     25     74     66     79     55
D60V3, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              1               25
  CLUS_2              5               74
  CLUS_3              7               66
  CLUS_4              3               79
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN2L MUTATED        3     11      3      2
  ATXN2L WILD-TYPE    124     40     68     67
D60V4, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              3              124
  CLUS_2             11               40
  CLUS_3              3               68
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATXN2L MUTATED        1      3     13      0      5
  ATXN2L WILD-TYPE     83     82     72     69     42
D60V5, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               82
  CLUS_3             13               72
  CLUS_4              0               69
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATXN2L MUTATED        5      4      0     13
  ATXN2L WILD-TYPE     90     70    121     67
D60V6, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              5               90
  CLUS_2              4               70
  CLUS_3              0              121
  CLUS_4             13               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATXN2L MUTATED        3      8      6      3      2      1
  ATXN2L WILD-TYPE     49     56     66    101     38     58
D60V7, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              3               49
  CLUS_2              8               56
  CLUS_3              6               66
  CLUS_4              3              101
  CLUS_5              2               38
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATXN2L MUTATED       17      2      4
  ATXN2L WILD-TYPE    200     73     95
D60V8, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1             17              200
  CLUS_2              2               73
  CLUS_3              4               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATXN2L MUTATED        7      4      5
  ATXN2L WILD-TYPE    114    104     67
D60V9, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              7              114
  CLUS_2              4              104
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATXN2L MUTATED        6      1      3      1      5
  ATXN2L WILD-TYPE     82     65     42     54     42
D60V10, multiclass
        clus
vv       ATXN2L MUTATED ATXN2L WILD-TYPE
  CLUS_1              6               82
  CLUS_2              1               65
  CLUS_3              3               42
  CLUS_4              1               54
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = GLI1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI1 MUTATED        3     16      1      0
  GLI1 WILD-TYPE    201    121     46      3
D61V1, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            3            201
  CLUS_2           16            121
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLI1 MUTATED        0     10      3      0      2
  GLI1 WILD-TYPE     39     86     41     88     78
D61V2, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2           10             86
  CLUS_3            3             41
  CLUS_4            0             88
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLI1 MUTATED        1      9      3      1      2
  GLI1 WILD-TYPE     25     70     70     81     56
D61V3, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            9             70
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI1 MUTATED        3      6      6      1
  GLI1 WILD-TYPE    124     45     65     68
D61V4, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            6             45
  CLUS_3            6             65
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLI1 MUTATED        0      4     11      2      1
  GLI1 WILD-TYPE     84     81     74     67     46
D61V5, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            4             81
  CLUS_3           11             74
  CLUS_4            2             67
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLI1 MUTATED        7      2      2      7
  GLI1 WILD-TYPE     88     72    119     73
D61V6, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            7             88
  CLUS_2            2             72
  CLUS_3            2            119
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLI1 MUTATED        2     10      3      4      1      0
  GLI1 WILD-TYPE     50     54     69    100     39     59
D61V7, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            2             50
  CLUS_2           10             54
  CLUS_3            3             69
  CLUS_4            4            100
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI1 MUTATED       16      3      1
  GLI1 WILD-TYPE    201     72     98
D61V8, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1           16            201
  CLUS_2            3             72
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GLI1 MUTATED        4      4      6
  GLI1 WILD-TYPE    117    104     66
D61V9, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            4            104
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLI1 MUTATED        4      2      4      0      4
  GLI1 WILD-TYPE     84     64     41     55     43
D61V10, multiclass
        clus
vv       GLI1 MUTATED GLI1 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            2             64
  CLUS_3            4             41
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = INPPL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPPL1 MUTATED        3     20      1      0
  INPPL1 WILD-TYPE    201    117     46      3
D62V1, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             20              117
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INPPL1 MUTATED        0      8      5      0      1
  INPPL1 WILD-TYPE     39     88     39     88     79
D62V2, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              8               88
  CLUS_3              5               39
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INPPL1 MUTATED        1     11      2      3      4
  INPPL1 WILD-TYPE     25     68     71     79     54
D62V3, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2             11               68
  CLUS_3              2               71
  CLUS_4              3               79
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPPL1 MUTATED        4     10      5      2
  INPPL1 WILD-TYPE    123     41     66     67
D62V4, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              4              123
  CLUS_2             10               41
  CLUS_3              5               66
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INPPL1 MUTATED        0      5     12      2      3
  INPPL1 WILD-TYPE     84     80     73     67     44
D62V5, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              5               80
  CLUS_3             12               73
  CLUS_4              2               67
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPPL1 MUTATED        9      3      2      8
  INPPL1 WILD-TYPE     86     71    119     72
D62V6, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              9               86
  CLUS_2              3               71
  CLUS_3              2              119
  CLUS_4              8               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  INPPL1 MUTATED        3     13      3      4      1      0
  INPPL1 WILD-TYPE     49     51     69    100     39     59
D62V7, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              3               49
  CLUS_2             13               51
  CLUS_3              3               69
  CLUS_4              4              100
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INPPL1 MUTATED       19      3      2
  INPPL1 WILD-TYPE    198     72     97
D62V8, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1             19              198
  CLUS_2              3               72
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INPPL1 MUTATED        5      3      5
  INPPL1 WILD-TYPE    116    105     67
D62V9, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              3              105
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INPPL1 MUTATED        5      2      3      0      3
  INPPL1 WILD-TYPE     83     64     42     55     44
D62V10, multiclass
        clus
vv       INPPL1 MUTATED INPPL1 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              2               64
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = SOX7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX7 MUTATED        5     13      0      1
  SOX7 WILD-TYPE    199    124     47      2
D63V1, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            5            199
  CLUS_2           13            124
  CLUS_3            0             47
  CLUS_4            1              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOX7 MUTATED        2      8      2      1      3
  SOX7 WILD-TYPE     37     88     42     87     77
D63V2, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            8             88
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOX7 MUTATED        4      7      2      0      3
  SOX7 WILD-TYPE     22     72     71     82     55
D63V3, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            4             22
  CLUS_2            7             72
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX7 MUTATED        5      3      6      2
  SOX7 WILD-TYPE    122     48     65     67
D63V4, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            5            122
  CLUS_2            3             48
  CLUS_3            6             65
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOX7 MUTATED        1      4      6      4      3
  SOX7 WILD-TYPE     83     81     79     65     44
D63V5, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            4             81
  CLUS_3            6             79
  CLUS_4            4             65
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOX7 MUTATED        8      3      2      5
  SOX7 WILD-TYPE     87     71    119     75
D63V6, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            8             87
  CLUS_2            3             71
  CLUS_3            2            119
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SOX7 MUTATED        5      7      2      1      3      1
  SOX7 WILD-TYPE     47     57     70    103     37     58
D63V7, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            5             47
  CLUS_2            7             57
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            3             37
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX7 MUTATED       16      1      2
  SOX7 WILD-TYPE    201     74     97
D63V8, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1           16            201
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOX7 MUTATED        4      4      7
  SOX7 WILD-TYPE    117    104     65
D63V9, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            4            104
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOX7 MUTATED        6      3      3      0      3
  SOX7 WILD-TYPE     82     63     42     55     44
D63V10, multiclass
        clus
vv       SOX7 MUTATED SOX7 WILD-TYPE
  CLUS_1            6             82
  CLUS_2            3             63
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = FHOD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD3 MUTATED        6     20      4      0
  FHOD3 WILD-TYPE    198    117     43      3
D64V1, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             6             198
  CLUS_2            20             117
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHOD3 MUTATED        1     13      5      1      0
  FHOD3 WILD-TYPE     38     83     39     87     80
D64V2, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2            13              83
  CLUS_3             5              39
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHOD3 MUTATED        2      5      7      3      6
  FHOD3 WILD-TYPE     24     74     66     79     52
D64V3, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             5              74
  CLUS_3             7              66
  CLUS_4             3              79
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD3 MUTATED        7      9      2      5
  FHOD3 WILD-TYPE    120     42     69     64
D64V4, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             7             120
  CLUS_2             9              42
  CLUS_3             2              69
  CLUS_4             5              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHOD3 MUTATED        3      6      8      5      5
  FHOD3 WILD-TYPE     81     79     77     64     42
D64V5, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             6              79
  CLUS_3             8              77
  CLUS_4             5              64
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHOD3 MUTATED        8      4      4     11
  FHOD3 WILD-TYPE     87     70    117     69
D64V6, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             8              87
  CLUS_2             4              70
  CLUS_3             4             117
  CLUS_4            11              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FHOD3 MUTATED       10     11      4      2      0      3
  FHOD3 WILD-TYPE     42     53     68    102     40     56
D64V7, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1            10              42
  CLUS_2            11              53
  CLUS_3             4              68
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHOD3 MUTATED       25      1      4
  FHOD3 WILD-TYPE    192     74     95
D64V8, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1            25             192
  CLUS_2             1              74
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHOD3 MUTATED       10      1      7
  FHOD3 WILD-TYPE    111    107     65
D64V9, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1            10             111
  CLUS_2             1             107
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHOD3 MUTATED        8      0      3      1      6
  FHOD3 WILD-TYPE     80     66     42     54     41
D64V10, multiclass
        clus
vv       FHOD3 MUTATED FHOD3 WILD-TYPE
  CLUS_1             8              80
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = RNF128 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF128 MUTATED        1     11      2      0
  RNF128 WILD-TYPE    203    126     45      3
D65V1, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             11              126
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF128 MUTATED        0      9      2      1      1
  RNF128 WILD-TYPE     39     87     42     87     79
D65V2, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              9               87
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF128 MUTATED        1      3      4      0      4
  RNF128 WILD-TYPE     25     76     69     82     54
D65V3, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              4               69
  CLUS_4              0               82
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF128 MUTATED        2      6      3      1
  RNF128 WILD-TYPE    125     45     68     68
D65V4, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              6               45
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF128 MUTATED        1      2      7      1      3
  RNF128 WILD-TYPE     83     83     78     68     44
D65V5, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              7               78
  CLUS_4              1               68
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF128 MUTATED        2      2      3      7
  RNF128 WILD-TYPE     93     72    118     73
D65V6, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              3              118
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNF128 MUTATED        5      4      3      1      0      1
  RNF128 WILD-TYPE     47     60     69    103     40     58
D65V7, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              4               60
  CLUS_3              3               69
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF128 MUTATED       13      0      1
  RNF128 WILD-TYPE    204     75     98
D65V8, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1             13              204
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF128 MUTATED        7      0      3
  RNF128 WILD-TYPE    114    108     69
D65V9, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              7              114
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF128 MUTATED        2      0      2      1      5
  RNF128 WILD-TYPE     86     66     43     54     42
D65V10, multiclass
        clus
vv       RNF128 MUTATED RNF128 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = HLA-A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        2     15      2      0
  HLA-A WILD-TYPE    202    122     45      3
D66V1, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2             202
  CLUS_2            15             122
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-A MUTATED        1      7      4      1      1
  HLA-A WILD-TYPE     38     89     40     87     79
D66V2, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              38
  CLUS_2             7              89
  CLUS_3             4              40
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-A MUTATED        0      9      3      0      4
  HLA-A WILD-TYPE     26     70     70     82     54
D66V3, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             0              26
  CLUS_2             9              70
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        1      9      6      0
  HLA-A WILD-TYPE    126     42     65     69
D66V4, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1             126
  CLUS_2             9              42
  CLUS_3             6              65
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-A MUTATED        1      3     10      2      3
  HLA-A WILD-TYPE     83     82     75     67     44
D66V5, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3            10              75
  CLUS_4             2              67
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HLA-A MUTATED        5      1      1     12
  HLA-A WILD-TYPE     90     73    120     68
D66V6, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             5              90
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4            12              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HLA-A MUTATED        4      8      5      1      0      1
  HLA-A WILD-TYPE     48     56     67    103     40     58
D66V7, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             4              48
  CLUS_2             8              56
  CLUS_3             5              67
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED       17      0      2
  HLA-A WILD-TYPE    200     75     97
D66V8, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1            17             200
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HLA-A MUTATED        9      0      4
  HLA-A WILD-TYPE    112    108     68
D66V9, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             9             112
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HLA-A MUTATED        2      0      2      0      9
  HLA-A WILD-TYPE     86     66     43     55     38
D66V10, multiclass
        clus
vv       HLA-A MUTATED HLA-A WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             9              38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = MFRP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFRP MUTATED        1     13      1      0
  MFRP WILD-TYPE    203    124     46      3
D67V1, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            1            203
  CLUS_2           13            124
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MFRP MUTATED        1      6      4      0      0
  MFRP WILD-TYPE     38     90     40     88     80
D67V2, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            1             38
  CLUS_2            6             90
  CLUS_3            4             40
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MFRP MUTATED        1      5      2      0      6
  MFRP WILD-TYPE     25     74     71     82     52
D67V3, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            1             25
  CLUS_2            5             74
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            6             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFRP MUTATED        3      7      4      0
  MFRP WILD-TYPE    124     44     67     69
D67V4, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            3            124
  CLUS_2            7             44
  CLUS_3            4             67
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MFRP MUTATED        1      3      8      1      1
  MFRP WILD-TYPE     83     82     77     68     46
D67V5, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            1             83
  CLUS_2            3             82
  CLUS_3            8             77
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFRP MUTATED        3      0      1     10
  MFRP WILD-TYPE     92     74    120     70
D67V6, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            3             92
  CLUS_2            0             74
  CLUS_3            1            120
  CLUS_4           10             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MFRP MUTATED        3      4      4      3      0      1
  MFRP WILD-TYPE     49     60     68    101     40     58
D67V7, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            3             49
  CLUS_2            4             60
  CLUS_3            4             68
  CLUS_4            3            101
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MFRP MUTATED       12      1      2
  MFRP WILD-TYPE    205     74     97
D67V8, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1           12            205
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MFRP MUTATED        4      2      3
  MFRP WILD-TYPE    117    106     69
D67V9, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            4            117
  CLUS_2            2            106
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MFRP MUTATED        3      1      1      0      4
  MFRP WILD-TYPE     85     65     44     55     43
D67V10, multiclass
        clus
vv       MFRP MUTATED MFRP WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = EIF5B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5B MUTATED        2     22      1      0
  EIF5B WILD-TYPE    202    115     46      3
D68V1, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             2             202
  CLUS_2            22             115
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF5B MUTATED        3     12      4      0      1
  EIF5B WILD-TYPE     36     84     40     88     79
D68V2, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             3              36
  CLUS_2            12              84
  CLUS_3             4              40
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF5B MUTATED        2      9      5      1      4
  EIF5B WILD-TYPE     24     70     68     81     54
D68V3, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             2              24
  CLUS_2             9              70
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5B MUTATED        2     12      6      1
  EIF5B WILD-TYPE    125     39     65     68
D68V4, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             2             125
  CLUS_2            12              39
  CLUS_3             6              65
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF5B MUTATED        0      1     15      3      4
  EIF5B WILD-TYPE     84     84     70     66     43
D68V5, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3            15              70
  CLUS_4             3              66
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5B MUTATED        4      2      3     14
  EIF5B WILD-TYPE     91     72    118     66
D68V6, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             3             118
  CLUS_4            14              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EIF5B MUTATED        7     10      4      2      2      0
  EIF5B WILD-TYPE     45     54     68    102     38     59
D68V7, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             7              45
  CLUS_2            10              54
  CLUS_3             4              68
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EIF5B MUTATED       22      2      1
  EIF5B WILD-TYPE    195     73     98
D68V8, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1            22             195
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EIF5B MUTATED        9      0      8
  EIF5B WILD-TYPE    112    108     64
D68V9, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             9             112
  CLUS_2             0             108
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF5B MUTATED        5      1      4      0      7
  EIF5B WILD-TYPE     83     65     41     55     40
D68V10, multiclass
        clus
vv       EIF5B MUTATED EIF5B WILD-TYPE
  CLUS_1             5              83
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = C9ORF131 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF131 MUTATED        2     16      1      0
  C9ORF131 WILD-TYPE    202    121     46      3
D69V1, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                2                202
  CLUS_2               16                121
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF131 MUTATED        1      9      2      1      2
  C9ORF131 WILD-TYPE     38     87     42     87     78
D69V2, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                9                 87
  CLUS_3                2                 42
  CLUS_4                1                 87
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF131 MUTATED        0      5      5      2      2
  C9ORF131 WILD-TYPE     26     74     68     80     56
D69V3, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                5                 74
  CLUS_3                5                 68
  CLUS_4                2                 80
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF131 MUTATED        1      7      4      2
  C9ORF131 WILD-TYPE    126     44     67     67
D69V4, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                1                126
  CLUS_2                7                 44
  CLUS_3                4                 67
  CLUS_4                2                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF131 MUTATED        0      4      8      3      1
  C9ORF131 WILD-TYPE     84     81     77     66     46
D69V5, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                4                 81
  CLUS_3                8                 77
  CLUS_4                3                 66
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF131 MUTATED        5      3      1      7
  C9ORF131 WILD-TYPE     90     71    120     73
D69V6, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                5                 90
  CLUS_2                3                 71
  CLUS_3                1                120
  CLUS_4                7                 73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C9ORF131 MUTATED        6      6      2      2      2      1
  C9ORF131 WILD-TYPE     46     58     70    102     38     58
D69V7, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                6                 46
  CLUS_2                6                 58
  CLUS_3                2                 70
  CLUS_4                2                102
  CLUS_5                2                 38
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF131 MUTATED       12      3      4
  C9ORF131 WILD-TYPE    205     72     95
D69V8, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1               12                205
  CLUS_2                3                 72
  CLUS_3                4                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF131 MUTATED        6      1      5
  C9ORF131 WILD-TYPE    115    107     67
D69V9, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                6                115
  CLUS_2                1                107
  CLUS_3                5                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF131 MUTATED        4      1      2      1      4
  C9ORF131 WILD-TYPE     84     65     43     54     43
D69V10, multiclass
        clus
vv       C9ORF131 MUTATED C9ORF131 WILD-TYPE
  CLUS_1                4                 84
  CLUS_2                1                 65
  CLUS_3                2                 43
  CLUS_4                1                 54
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = BCORL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCORL1 MUTATED        4     19      3      0
  BCORL1 WILD-TYPE    200    118     44      3
D70V1, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              4              200
  CLUS_2             19              118
  CLUS_3              3               44
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCORL1 MUTATED        3     11      4      2      2
  BCORL1 WILD-TYPE     36     85     40     86     78
D70V2, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              3               36
  CLUS_2             11               85
  CLUS_3              4               40
  CLUS_4              2               86
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCORL1 MUTATED        1      6      8      0      6
  BCORL1 WILD-TYPE     25     73     65     82     52
D70V3, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              6               73
  CLUS_3              8               65
  CLUS_4              0               82
  CLUS_5              6               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCORL1 MUTATED        5     10      5      1
  BCORL1 WILD-TYPE    122     41     66     68
D70V4, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              5              122
  CLUS_2             10               41
  CLUS_3              5               66
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCORL1 MUTATED        2      6     10      4      4
  BCORL1 WILD-TYPE     82     79     75     65     43
D70V5, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              6               79
  CLUS_3             10               75
  CLUS_4              4               65
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCORL1 MUTATED        7      2      3     14
  BCORL1 WILD-TYPE     88     72    118     66
D70V6, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              7               88
  CLUS_2              2               72
  CLUS_3              3              118
  CLUS_4             14               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCORL1 MUTATED        6      8      4      4      1      3
  BCORL1 WILD-TYPE     46     56     68    100     39     56
D70V7, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              6               46
  CLUS_2              8               56
  CLUS_3              4               68
  CLUS_4              4              100
  CLUS_5              1               39
  CLUS_6              3               56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCORL1 MUTATED       20      1      5
  BCORL1 WILD-TYPE    197     74     94
D70V8, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1             20              197
  CLUS_2              1               74
  CLUS_3              5               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCORL1 MUTATED        9      2      7
  BCORL1 WILD-TYPE    112    106     65
D70V9, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              9              112
  CLUS_2              2              106
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCORL1 MUTATED        6      0      3      1      8
  BCORL1 WILD-TYPE     82     66     42     54     39
D70V10, multiclass
        clus
vv       BCORL1 MUTATED BCORL1 WILD-TYPE
  CLUS_1              6               82
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              1               54
  CLUS_5              8               39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = PAFAH1B1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAFAH1B1 MUTATED        2     11      1      0
  PAFAH1B1 WILD-TYPE    202    126     46      3
D71V1, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                2                202
  CLUS_2               11                126
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAFAH1B1 MUTATED        1      8      0      0      3
  PAFAH1B1 WILD-TYPE     38     88     44     88     77
D71V2, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                8                 88
  CLUS_3                0                 44
  CLUS_4                0                 88
  CLUS_5                3                 77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAFAH1B1 MUTATED        1      1      6      1      4
  PAFAH1B1 WILD-TYPE     25     78     67     81     54
D71V3, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                 78
  CLUS_3                6                 67
  CLUS_4                1                 81
  CLUS_5                4                 54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAFAH1B1 MUTATED        4      7      1      1
  PAFAH1B1 WILD-TYPE    123     44     70     68
D71V4, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                4                123
  CLUS_2                7                 44
  CLUS_3                1                 70
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAFAH1B1 MUTATED        0      3      8      2      2
  PAFAH1B1 WILD-TYPE     84     82     77     67     45
D71V5, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                3                 82
  CLUS_3                8                 77
  CLUS_4                2                 67
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAFAH1B1 MUTATED        3      2      3      7
  PAFAH1B1 WILD-TYPE     92     72    118     73
D71V6, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                3                 92
  CLUS_2                2                 72
  CLUS_3                3                118
  CLUS_4                7                 73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAFAH1B1 MUTATED        4      6      2      2      1      0
  PAFAH1B1 WILD-TYPE     48     58     70    102     39     59
D71V7, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                6                 58
  CLUS_3                2                 70
  CLUS_4                2                102
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PAFAH1B1 MUTATED       13      1      1
  PAFAH1B1 WILD-TYPE    204     74     98
D71V8, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1               13                204
  CLUS_2                1                 74
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PAFAH1B1 MUTATED        4      2      5
  PAFAH1B1 WILD-TYPE    117    106     67
D71V9, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                2                106
  CLUS_3                5                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAFAH1B1 MUTATED        3      1      3      0      4
  PAFAH1B1 WILD-TYPE     85     65     42     55     43
D71V10, multiclass
        clus
vv       PAFAH1B1 MUTATED PAFAH1B1 WILD-TYPE
  CLUS_1                3                 85
  CLUS_2                1                 65
  CLUS_3                3                 42
  CLUS_4                0                 55
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = EPB49 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB49 MUTATED        2     11      0      0
  EPB49 WILD-TYPE    202    126     47      3
D72V1, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            11             126
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB49 MUTATED        0      6      1      0      2
  EPB49 WILD-TYPE     39     90     43     88     78
D72V2, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB49 MUTATED        0      3      3      0      4
  EPB49 WILD-TYPE     26     76     70     82     54
D72V3, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB49 MUTATED        2      5      3      0
  EPB49 WILD-TYPE    125     46     68     69
D72V4, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             5              46
  CLUS_3             3              68
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB49 MUTATED        0      3      7      1      2
  EPB49 WILD-TYPE     84     82     78     68     45
D72V5, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             7              78
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB49 MUTATED        4      2      1      6
  EPB49 WILD-TYPE     91     72    120     74
D72V6, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPB49 MUTATED        3      5      3      1      1      0
  EPB49 WILD-TYPE     49     59     69    103     39     59
D72V7, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             5              59
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPB49 MUTATED       10      2      1
  EPB49 WILD-TYPE    207     73     98
D72V8, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPB49 MUTATED        5      1      2
  EPB49 WILD-TYPE    116    107     70
D72V9, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB49 MUTATED        1      0      1      0      6
  EPB49 WILD-TYPE     87     66     44     55     41
D72V10, multiclass
        clus
vv       EPB49 MUTATED EPB49 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = DDC MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDC MUTATED        0      7      2      1
  DDC WILD-TYPE    204    130     45      2
D73V1, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           0           204
  CLUS_2           7           130
  CLUS_3           2            45
  CLUS_4           1             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDC MUTATED        1      3      2      0      1
  DDC WILD-TYPE     38     93     42     88     79
D73V2, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           1            38
  CLUS_2           3            93
  CLUS_3           2            42
  CLUS_4           0            88
  CLUS_5           1            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDC MUTATED        1      3      2      0      3
  DDC WILD-TYPE     25     76     71     82     55
D73V3, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           1            25
  CLUS_2           3            76
  CLUS_3           2            71
  CLUS_4           0            82
  CLUS_5           3            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDC MUTATED        3      3      2      1
  DDC WILD-TYPE    124     48     69     68
D73V4, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           3           124
  CLUS_2           3            48
  CLUS_3           2            69
  CLUS_4           1            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDC MUTATED        0      2      4      1      1
  DDC WILD-TYPE     84     83     81     68     46
D73V5, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           0            84
  CLUS_2           2            83
  CLUS_3           4            81
  CLUS_4           1            68
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDC MUTATED        3      1      2      2
  DDC WILD-TYPE     92     73    119     78
D73V6, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           3            92
  CLUS_2           1            73
  CLUS_3           2           119
  CLUS_4           2            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDC MUTATED        0      6      3      0      1      0
  DDC WILD-TYPE     52     58     69    104     39     59
D73V7, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           0            52
  CLUS_2           6            58
  CLUS_3           3            69
  CLUS_4           0           104
  CLUS_5           1            39
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DDC MUTATED       10      0      0
  DDC WILD-TYPE    207     75     99
D73V8, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1          10           207
  CLUS_2           0            75
  CLUS_3           0            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DDC MUTATED        4      0      3
  DDC WILD-TYPE    117    108     69
D73V9, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           4           117
  CLUS_2           0           108
  CLUS_3           3            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDC MUTATED        4      0      2      0      1
  DDC WILD-TYPE     84     66     43     55     46
D73V10, multiclass
        clus
vv       DDC MUTATED DDC WILD-TYPE
  CLUS_1           4            84
  CLUS_2           0            66
  CLUS_3           2            43
  CLUS_4           0            55
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = IWS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IWS1 MUTATED        3     10      1      0
  IWS1 WILD-TYPE    201    127     46      3
D74V1, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            3            201
  CLUS_2           10            127
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IWS1 MUTATED        1      7      2      0      1
  IWS1 WILD-TYPE     38     89     42     88     79
D74V2, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            7             89
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IWS1 MUTATED        0      6      4      0      2
  IWS1 WILD-TYPE     26     73     69     82     56
D74V3, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            6             73
  CLUS_3            4             69
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IWS1 MUTATED        1      6      5      0
  IWS1 WILD-TYPE    126     45     66     69
D74V4, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            6             45
  CLUS_3            5             66
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IWS1 MUTATED        0      2      8      1      1
  IWS1 WILD-TYPE     84     83     77     68     46
D74V5, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            8             77
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IWS1 MUTATED        2      1      2      7
  IWS1 WILD-TYPE     93     73    119     73
D74V6, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IWS1 MUTATED        4      6      3      1      0      0
  IWS1 WILD-TYPE     48     58     69    103     40     59
D74V7, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            6             58
  CLUS_3            3             69
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IWS1 MUTATED       12      1      1
  IWS1 WILD-TYPE    205     74     98
D74V8, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1           12            205
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IWS1 MUTATED        3      1      3
  IWS1 WILD-TYPE    118    107     69
D74V9, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            1            107
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IWS1 MUTATED        2      0      2      0      3
  IWS1 WILD-TYPE     86     66     43     55     44
D74V10, multiclass
        clus
vv       IWS1 MUTATED IWS1 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = LMAN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMAN1 MUTATED        0     11      2      0
  LMAN1 WILD-TYPE    204    126     45      3
D75V1, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            11             126
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LMAN1 MUTATED        2      5      2      0      1
  LMAN1 WILD-TYPE     37     91     42     88     79
D75V2, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             5              91
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LMAN1 MUTATED        0      5      1      1      2
  LMAN1 WILD-TYPE     26     74     72     81     56
D75V3, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             5              74
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMAN1 MUTATED        0      5      3      1
  LMAN1 WILD-TYPE    127     46     68     68
D75V4, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             5              46
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LMAN1 MUTATED        0      2      5      3      2
  LMAN1 WILD-TYPE     84     83     80     66     45
D75V5, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             3              66
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMAN1 MUTATED        4      1      0      7
  LMAN1 WILD-TYPE     91     73    121     73
D75V6, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LMAN1 MUTATED        3      4      4      1      1      0
  LMAN1 WILD-TYPE     49     60     68    103     39     59
D75V7, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             4              60
  CLUS_3             4              68
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMAN1 MUTATED       12      1      0
  LMAN1 WILD-TYPE    205     74     99
D75V8, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMAN1 MUTATED        6      0      3
  LMAN1 WILD-TYPE    115    108     69
D75V9, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             0             108
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LMAN1 MUTATED        3      1      0      0      5
  LMAN1 WILD-TYPE     85     65     45     55     42
D75V10, multiclass
        clus
vv       LMAN1 MUTATED LMAN1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(76) Variable = FAM116A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM116A MUTATED        1      6      2      0
  FAM116A WILD-TYPE    203    131     45      3
D76V1, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               1               203
  CLUS_2               6               131
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM116A MUTATED        2      3      1      0      0
  FAM116A WILD-TYPE     37     93     43     88     80
D76V2, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               2                37
  CLUS_2               3                93
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM116A MUTATED        0      3      4      0      2
  FAM116A WILD-TYPE     26     76     69     82     56
D76V3, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               0                26
  CLUS_2               3                76
  CLUS_3               4                69
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM116A MUTATED        3      5      1      0
  FAM116A WILD-TYPE    124     46     70     69
D76V4, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               3               124
  CLUS_2               5                46
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM116A MUTATED        0      1      4      2      2
  FAM116A WILD-TYPE     84     84     81     67     45
D76V5, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               4                81
  CLUS_4               2                67
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM116A MUTATED        3      2      0      4
  FAM116A WILD-TYPE     92     72    121     76
D76V6, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               3                92
  CLUS_2               2                72
  CLUS_3               0               121
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM116A MUTATED        3      3      0      1      2      0
  FAM116A WILD-TYPE     49     61     72    103     38     59
D76V7, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               3                49
  CLUS_2               3                61
  CLUS_3               0                72
  CLUS_4               1               103
  CLUS_5               2                38
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM116A MUTATED        7      1      1
  FAM116A WILD-TYPE    210     74     98
D76V8, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               7               210
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM116A MUTATED        4      1      0
  FAM116A WILD-TYPE    117    107     72
D76V9, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               4               117
  CLUS_2               1               107
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM116A MUTATED        2      1      0      0      2
  FAM116A WILD-TYPE     86     65     45     55     45
D76V10, multiclass
        clus
vv       FAM116A MUTATED FAM116A WILD-TYPE
  CLUS_1               2                86
  CLUS_2               1                65
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(77) Variable = KIAA0664 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0664 MUTATED        3     17      3      0
  KIAA0664 WILD-TYPE    201    120     44      3
D77V1, multiclass
        clus
vv       KIAA0664 MUTATED KIAA0664 WILD-TYPE
  CLUS_1                3                201
  CLUS_2               17                120
  CLUS_3                3                 44
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0664 MUTATED        2     12      3      1      1
  KIAA0664 WILD-TYPE     37     84     41     87     79
D77V2, multiclass
        clus
vv       KIAA0664 MUTATED KIAA0664 WILD-TYPE
  CLUS_1                2                 37
  CLUS_2               12                 84
  CLUS_3                3                 41
  CLUS_4                1                 87
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0664 MUTATED        2      5      8      1      4
  KIAA0664 WILD-TYPE     24     74     65     81     54
D77V3, multiclass
        clus
vv       KIAA0664 MUTATED KIAA0664 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                5                 74
  CLUS_3                8                 65
  CLUS_4                1                 81
  CLUS_5                4                 54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0664 MUTATED        3     14      1      2
  KIAA0664 WILD-TYPE    124     37     70     67
D77V4, multiclass
        clus
vv       KIAA0664 MUTATED KIAA0664 WILD-TYPE
  CLUS_1                3                124
  CLUS_2               14                 37
  CLUS_3                1                 70
  CLUS_4                2                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0664 MUTATED        1      5      9      3      2
  KIAA0664 WILD-TYPE     83     80     76     66     45
D77V5, multiclass
        clus
vv       KIAA0664 MUTATED KIAA0664 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                5                 80
  CLUS_3                9                 76
  CLUS_4                3                 66
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0664 MUTATED        6      3      3      8
  KIAA0664 WILD-TYPE     89     71    118     72
D77V6, multiclass
        clus
vv       KIAA0664 MUTATED KIAA0664 WILD-TYPE
  CLUS_1                6                 89
  CLUS_2                3                 71
  CLUS_3                3                118
  CLUS_4                8                 72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0664 MUTATED        5      9      5      2      2      0
  KIAA0664 WILD-TYPE     47     55     67    102     38     59
D77V7, multiclass
        clus
vv       KIAA0664 MUTATED KIAA0664 WILD-TYPE
  CLUS_1                5                 47
  CLUS_2                9                 55
  CLUS_3                5                 67
  CLUS_4                2                102
  CLUS_5                2                 38
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0664 MUTATED       19      2      2
  KIAA0664 WILD-TYPE    198     73     97
D77V8, multiclass
        clus
vv       KIAA0664 MUTATED KIAA0664 WILD-TYPE
  CLUS_1               19                198
  CLUS_2                2                 73
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0664 MUTATED        6      2      9
  KIAA0664 WILD-TYPE    115    106     63
D77V9, multiclass
        clus
vv       KIAA0664 MUTATED KIAA0664 WILD-TYPE
  CLUS_1                6                115
  CLUS_2                2                106
  CLUS_3                9                 63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0664 MUTATED        4      2      4      0      7
  KIAA0664 WILD-TYPE     84     64     41     55     40
D77V10, multiclass
        clus
vv       KIAA0664 MUTATED KIAA0664 WILD-TYPE
  CLUS_1                4                 84
  CLUS_2                2                 64
  CLUS_3                4                 41
  CLUS_4                0                 55
  CLUS_5                7                 40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(78) Variable = JARID2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JARID2 MUTATED        5     27      3      1
  JARID2 WILD-TYPE    199    110     44      2
D78V1, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1              5              199
  CLUS_2             27              110
  CLUS_3              3               44
  CLUS_4              1                2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JARID2 MUTATED        3     19      3      2      2
  JARID2 WILD-TYPE     36     77     41     86     78
D78V2, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1              3               36
  CLUS_2             19               77
  CLUS_3              3               41
  CLUS_4              2               86
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JARID2 MUTATED        1     12      7      1      5
  JARID2 WILD-TYPE     25     67     66     81     53
D78V3, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2             12               67
  CLUS_3              7               66
  CLUS_4              1               81
  CLUS_5              5               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JARID2 MUTATED        5     12      8      1
  JARID2 WILD-TYPE    122     39     63     68
D78V4, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1              5              122
  CLUS_2             12               39
  CLUS_3              8               63
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JARID2 MUTATED        0      3     20      7      5
  JARID2 WILD-TYPE     84     82     65     62     42
D78V5, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3             20               65
  CLUS_4              7               62
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JARID2 MUTATED       13      2      2     18
  JARID2 WILD-TYPE     82     72    119     62
D78V6, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1             13               82
  CLUS_2              2               72
  CLUS_3              2              119
  CLUS_4             18               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  JARID2 MUTATED       10     13      7      4      2      0
  JARID2 WILD-TYPE     42     51     65    100     38     59
D78V7, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1             10               42
  CLUS_2             13               51
  CLUS_3              7               65
  CLUS_4              4              100
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  JARID2 MUTATED       31      2      3
  JARID2 WILD-TYPE    186     73     96
D78V8, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1             31              186
  CLUS_2              2               73
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  JARID2 MUTATED       13      5      8
  JARID2 WILD-TYPE    108    103     64
D78V9, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1             13              108
  CLUS_2              5              103
  CLUS_3              8               64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JARID2 MUTATED        7      1      5      1     12
  JARID2 WILD-TYPE     81     65     40     54     35
D78V10, multiclass
        clus
vv       JARID2 MUTATED JARID2 WILD-TYPE
  CLUS_1              7               81
  CLUS_2              1               65
  CLUS_3              5               40
  CLUS_4              1               54
  CLUS_5             12               35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(79) Variable = SLC9A10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A10 MUTATED        1     12      0      0
  SLC9A10 WILD-TYPE    203    125     47      3
D79V1, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               1               203
  CLUS_2              12               125
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A10 MUTATED        1      7      2      1      2
  SLC9A10 WILD-TYPE     38     89     42     87     78
D79V2, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               7                89
  CLUS_3               2                42
  CLUS_4               1                87
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A10 MUTATED        1      3      3      1      3
  SLC9A10 WILD-TYPE     25     76     70     81     55
D79V3, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                76
  CLUS_3               3                70
  CLUS_4               1                81
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A10 MUTATED        1      6      2      2
  SLC9A10 WILD-TYPE    126     45     69     67
D79V4, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               6                45
  CLUS_3               2                69
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A10 MUTATED        0      2      8      0      2
  SLC9A10 WILD-TYPE     84     83     77     69     45
D79V5, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3               8                77
  CLUS_4               0                69
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A10 MUTATED        2      2      2      6
  SLC9A10 WILD-TYPE     93     72    119     74
D79V6, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               2                72
  CLUS_3               2               119
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC9A10 MUTATED        3      5      2      0      2      0
  SLC9A10 WILD-TYPE     49     59     70    104     38     59
D79V7, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               5                59
  CLUS_3               2                70
  CLUS_4               0               104
  CLUS_5               2                38
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC9A10 MUTATED        9      2      1
  SLC9A10 WILD-TYPE    208     73     98
D79V8, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               9               208
  CLUS_2               2                73
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC9A10 MUTATED        4      1      7
  SLC9A10 WILD-TYPE    117    107     65
D79V9, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               1               107
  CLUS_3               7                65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A10 MUTATED        5      0      3      0      4
  SLC9A10 WILD-TYPE     83     66     42     55     43
D79V10, multiclass
        clus
vv       SLC9A10 MUTATED SLC9A10 WILD-TYPE
  CLUS_1               5                83
  CLUS_2               0                66
  CLUS_3               3                42
  CLUS_4               0                55
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(80) Variable = ZFP36L2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        4      9      1      0
  ZFP36L2 WILD-TYPE    200    128     46      3
D80V1, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               4               200
  CLUS_2               9               128
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L2 MUTATED        1      9      0      1      1
  ZFP36L2 WILD-TYPE     38     87     44     87     79
D80V2, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               9                87
  CLUS_3               0                44
  CLUS_4               1                87
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L2 MUTATED        1      3      3      1      2
  ZFP36L2 WILD-TYPE     25     76     70     81     56
D80V3, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                76
  CLUS_3               3                70
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        3      5      0      2
  ZFP36L2 WILD-TYPE    124     46     71     67
D80V4, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               5                46
  CLUS_3               0                71
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L2 MUTATED        3      3      4      3      1
  ZFP36L2 WILD-TYPE     81     82     81     66     46
D80V5, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               3                81
  CLUS_2               3                82
  CLUS_3               4                81
  CLUS_4               3                66
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L2 MUTATED        4      2      3      5
  ZFP36L2 WILD-TYPE     91     72    118     75
D80V6, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               2                72
  CLUS_3               3               118
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFP36L2 MUTATED        5      1      2      4      1      1
  ZFP36L2 WILD-TYPE     47     63     70    100     39     58
D80V7, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               5                47
  CLUS_2               1                63
  CLUS_3               2                70
  CLUS_4               4               100
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED       10      1      3
  ZFP36L2 WILD-TYPE    207     74     96
D80V8, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1              10               207
  CLUS_2               1                74
  CLUS_3               3                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L2 MUTATED        6      2      1
  ZFP36L2 WILD-TYPE    115    106     71
D80V9, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               6               115
  CLUS_2               2               106
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L2 MUTATED        3      1      0      0      5
  ZFP36L2 WILD-TYPE     85     65     45     55     42
D80V10, multiclass
        clus
vv       ZFP36L2 MUTATED ZFP36L2 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               1                65
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(81) Variable = CTCF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        1     14      1      0
  CTCF WILD-TYPE    203    123     46      3
D81V1, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            1            203
  CLUS_2           14            123
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTCF MUTATED        2      6      3      0      4
  CTCF WILD-TYPE     37     90     41     88     76
D81V2, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            2             37
  CLUS_2            6             90
  CLUS_3            3             41
  CLUS_4            0             88
  CLUS_5            4             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTCF MUTATED        1      3      1      4      4
  CTCF WILD-TYPE     25     76     72     78     54
D81V3, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            1             72
  CLUS_4            4             78
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        3      4      2      4
  CTCF WILD-TYPE    124     47     69     65
D81V4, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            3            124
  CLUS_2            4             47
  CLUS_3            2             69
  CLUS_4            4             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTCF MUTATED        0      5      9      0      2
  CTCF WILD-TYPE     84     80     76     69     45
D81V5, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            0             84
  CLUS_2            5             80
  CLUS_3            9             76
  CLUS_4            0             69
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTCF MUTATED        1      3      3      9
  CTCF WILD-TYPE     94     71    118     71
D81V6, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            1             94
  CLUS_2            3             71
  CLUS_3            3            118
  CLUS_4            9             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTCF MUTATED        5      4      2      5      0      0
  CTCF WILD-TYPE     47     60     70     99     40     59
D81V7, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            5             47
  CLUS_2            4             60
  CLUS_3            2             70
  CLUS_4            5             99
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED       10      5      1
  CTCF WILD-TYPE    207     70     98
D81V8, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1           10            207
  CLUS_2            5             70
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTCF MUTATED        6      4      3
  CTCF WILD-TYPE    115    104     69
D81V9, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            6            115
  CLUS_2            4            104
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTCF MUTATED        6      2      2      0      3
  CTCF WILD-TYPE     82     64     43     55     44
D81V10, multiclass
        clus
vv       CTCF MUTATED CTCF WILD-TYPE
  CLUS_1            6             82
  CLUS_2            2             64
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(82) Variable = HDAC4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC4 MUTATED        2     20      4      0
  HDAC4 WILD-TYPE    202    117     43      3
D82V1, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            20             117
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDAC4 MUTATED        3     19      1      1      0
  HDAC4 WILD-TYPE     36     77     43     87     80
D82V2, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1             3              36
  CLUS_2            19              77
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDAC4 MUTATED        0      8      9      0      6
  HDAC4 WILD-TYPE     26     71     64     82     52
D82V3, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             8              71
  CLUS_3             9              64
  CLUS_4             0              82
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC4 MUTATED        4     15      4      0
  HDAC4 WILD-TYPE    123     36     67     69
D82V4, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1             4             123
  CLUS_2            15              36
  CLUS_3             4              67
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDAC4 MUTATED        1      2     14      3      5
  HDAC4 WILD-TYPE     83     83     71     66     42
D82V5, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3            14              71
  CLUS_4             3              66
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDAC4 MUTATED        4      2      1     18
  HDAC4 WILD-TYPE     91     72    120     62
D82V6, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4            18              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HDAC4 MUTATED        9      6      5      4      1      1
  HDAC4 WILD-TYPE     43     58     67    100     39     58
D82V7, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1             9              43
  CLUS_2             6              58
  CLUS_3             5              67
  CLUS_4             4             100
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC4 MUTATED       24      1      1
  HDAC4 WILD-TYPE    193     74     98
D82V8, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1            24             193
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDAC4 MUTATED       10      2      9
  HDAC4 WILD-TYPE    111    106     63
D82V9, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1            10             111
  CLUS_2             2             106
  CLUS_3             9              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDAC4 MUTATED        4      1      3      1     12
  HDAC4 WILD-TYPE     84     65     42     54     35
D82V10, multiclass
        clus
vv       HDAC4 MUTATED HDAC4 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5            12              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(83) Variable = NAPEPLD MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAPEPLD MUTATED        1      8      1      0
  NAPEPLD WILD-TYPE    203    129     46      3
D83V1, multiclass
        clus
vv       NAPEPLD MUTATED NAPEPLD WILD-TYPE
  CLUS_1               1               203
  CLUS_2               8               129
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAPEPLD MUTATED        2      5      0      0      2
  NAPEPLD WILD-TYPE     37     91     44     88     78
D83V2, multiclass
        clus
vv       NAPEPLD MUTATED NAPEPLD WILD-TYPE
  CLUS_1               2                37
  CLUS_2               5                91
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAPEPLD MUTATED        1      3      3      2      1
  NAPEPLD WILD-TYPE     25     76     70     80     57
D83V3, multiclass
        clus
vv       NAPEPLD MUTATED NAPEPLD WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                76
  CLUS_3               3                70
  CLUS_4               2                80
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAPEPLD MUTATED        2      3      3      2
  NAPEPLD WILD-TYPE    125     48     68     67
D83V4, multiclass
        clus
vv       NAPEPLD MUTATED NAPEPLD WILD-TYPE
  CLUS_1               2               125
  CLUS_2               3                48
  CLUS_3               3                68
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAPEPLD MUTATED        0      1      6      1      2
  NAPEPLD WILD-TYPE     84     84     79     68     45
D83V5, multiclass
        clus
vv       NAPEPLD MUTATED NAPEPLD WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               6                79
  CLUS_4               1                68
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAPEPLD MUTATED        2      2      1      5
  NAPEPLD WILD-TYPE     93     72    120     75
D83V6, multiclass
        clus
vv       NAPEPLD MUTATED NAPEPLD WILD-TYPE
  CLUS_1               2                93
  CLUS_2               2                72
  CLUS_3               1               120
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAPEPLD MUTATED        2      4      0      3      1      0
  NAPEPLD WILD-TYPE     50     60     72    101     39     59
D83V7, multiclass
        clus
vv       NAPEPLD MUTATED NAPEPLD WILD-TYPE
  CLUS_1               2                50
  CLUS_2               4                60
  CLUS_3               0                72
  CLUS_4               3               101
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NAPEPLD MUTATED        7      3      0
  NAPEPLD WILD-TYPE    210     72     99
D83V8, multiclass
        clus
vv       NAPEPLD MUTATED NAPEPLD WILD-TYPE
  CLUS_1               7               210
  CLUS_2               3                72
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NAPEPLD MUTATED        2      1      5
  NAPEPLD WILD-TYPE    119    107     67
D83V9, multiclass
        clus
vv       NAPEPLD MUTATED NAPEPLD WILD-TYPE
  CLUS_1               2               119
  CLUS_2               1               107
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAPEPLD MUTATED        2      1      3      0      2
  NAPEPLD WILD-TYPE     86     65     42     55     45
D83V10, multiclass
        clus
vv       NAPEPLD MUTATED NAPEPLD WILD-TYPE
  CLUS_1               2                86
  CLUS_2               1                65
  CLUS_3               3                42
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(84) Variable = RASA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED        4     11      4      0
  RASA1 WILD-TYPE    200    126     43      3
D84V1, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            11             126
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASA1 MUTATED        2      4      3      2      2
  RASA1 WILD-TYPE     37     92     41     86     78
D84V2, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             4              92
  CLUS_3             3              41
  CLUS_4             2              86
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASA1 MUTATED        3      4      2      2      7
  RASA1 WILD-TYPE     23     75     71     80     51
D84V3, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             4              75
  CLUS_3             2              71
  CLUS_4             2              80
  CLUS_5             7              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED        7      6      3      2
  RASA1 WILD-TYPE    120     45     68     67
D84V4, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             7             120
  CLUS_2             6              45
  CLUS_3             3              68
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASA1 MUTATED        1      2      5      7      4
  RASA1 WILD-TYPE     83     83     80     62     43
D84V5, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             7              62
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASA1 MUTATED       11      1      2      5
  RASA1 WILD-TYPE     84     73    119     75
D84V6, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1            11              84
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RASA1 MUTATED        3      8      2      1      4      1
  RASA1 WILD-TYPE     49     56     70    103     36     58
D84V7, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             8              56
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             4              36
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED       14      1      4
  RASA1 WILD-TYPE    203     74     95
D84V8, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             1              74
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RASA1 MUTATED        4      3      6
  RASA1 WILD-TYPE    117    105     66
D84V9, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             3             105
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASA1 MUTATED        6      0      4      0      3
  RASA1 WILD-TYPE     82     66     41     55     44
D84V10, multiclass
        clus
vv       RASA1 MUTATED RASA1 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             0              66
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(85) Variable = RHOQ MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOQ MUTATED        0      5      0      0
  RHOQ WILD-TYPE    204    132     47      3
D85V1, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            0            204
  CLUS_2            5            132
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOQ MUTATED        0      3      0      0      0
  RHOQ WILD-TYPE     39     93     44     88     80
D85V2, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOQ MUTATED        0      0      0      1      2
  RHOQ WILD-TYPE     26     79     73     81     56
D85V3, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             79
  CLUS_3            0             73
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOQ MUTATED        1      1      0      1
  RHOQ WILD-TYPE    126     50     71     68
D85V4, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            1            126
  CLUS_2            1             50
  CLUS_3            0             71
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOQ MUTATED        0      1      2      2      0
  RHOQ WILD-TYPE     84     84     83     67     47
D85V5, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            2             83
  CLUS_4            2             67
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOQ MUTATED        2      1      0      2
  RHOQ WILD-TYPE     93     73    121     78
D85V6, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            2             93
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RHOQ MUTATED        2      2      1      0      0      0
  RHOQ WILD-TYPE     50     62     71    104     40     59
D85V7, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            2             50
  CLUS_2            2             62
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOQ MUTATED        4      0      1
  RHOQ WILD-TYPE    213     75     98
D85V8, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            4            213
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RHOQ MUTATED        3      0      0
  RHOQ WILD-TYPE    118    108     72
D85V9, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOQ MUTATED        0      0      0      0      3
  RHOQ WILD-TYPE     88     66     45     55     44
D85V10, multiclass
        clus
vv       RHOQ MUTATED RHOQ WILD-TYPE
  CLUS_1            0             88
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(86) Variable = NT5M MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5M MUTATED        1      5      0      0
  NT5M WILD-TYPE    203    132     47      3
D86V1, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            1            203
  CLUS_2            5            132
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NT5M MUTATED        0      3      1      0      0
  NT5M WILD-TYPE     39     93     43     88     80
D86V2, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NT5M MUTATED        0      0      0      1      2
  NT5M WILD-TYPE     26     79     73     81     56
D86V3, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             79
  CLUS_3            0             73
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5M MUTATED        0      2      0      1
  NT5M WILD-TYPE    127     49     71     68
D86V4, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            0            127
  CLUS_2            2             49
  CLUS_3            0             71
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NT5M MUTATED        0      2      2      0      1
  NT5M WILD-TYPE     84     83     83     69     46
D86V5, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            2             83
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5M MUTATED        0      1      0      4
  NT5M WILD-TYPE     95     73    121     76
D86V6, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            0             95
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NT5M MUTATED        3      3      0      0      0      0
  NT5M WILD-TYPE     49     61     72    104     40     59
D86V7, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            3             49
  CLUS_2            3             61
  CLUS_3            0             72
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NT5M MUTATED        6      0      0
  NT5M WILD-TYPE    211     75     99
D86V8, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            6            211
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NT5M MUTATED        4      0      0
  NT5M WILD-TYPE    117    108     72
D86V9, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            4            117
  CLUS_2            0            108
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NT5M MUTATED        2      0      0      0      2
  NT5M WILD-TYPE     86     66     45     55     45
D86V10, multiclass
        clus
vv       NT5M MUTATED NT5M WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(87) Variable = CELSR1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CELSR1 MUTATED        5     29      3      0
  CELSR1 WILD-TYPE    199    108     44      3
D87V1, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              5              199
  CLUS_2             29              108
  CLUS_3              3               44
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CELSR1 MUTATED        3     17      6      2      2
  CELSR1 WILD-TYPE     36     79     38     86     78
D87V2, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              3               36
  CLUS_2             17               79
  CLUS_3              6               38
  CLUS_4              2               86
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CELSR1 MUTATED        3      8     11      3      6
  CELSR1 WILD-TYPE     23     71     62     79     52
D87V3, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              8               71
  CLUS_3             11               62
  CLUS_4              3               79
  CLUS_5              6               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CELSR1 MUTATED       12     11      6      2
  CELSR1 WILD-TYPE    115     40     65     67
D87V4, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1             12              115
  CLUS_2             11               40
  CLUS_3              6               65
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CELSR1 MUTATED        2      7     15      6      5
  CELSR1 WILD-TYPE     82     78     70     63     42
D87V5, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              7               78
  CLUS_3             15               70
  CLUS_4              6               63
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CELSR1 MUTATED       11      7      3     14
  CELSR1 WILD-TYPE     84     67    118     66
D87V6, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1             11               84
  CLUS_2              7               67
  CLUS_3              3              118
  CLUS_4             14               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CELSR1 MUTATED        6     13      5      8      3      2
  CELSR1 WILD-TYPE     46     51     67     96     37     57
D87V7, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              6               46
  CLUS_2             13               51
  CLUS_3              5               67
  CLUS_4              8               96
  CLUS_5              3               37
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CELSR1 MUTATED       26      4      7
  CELSR1 WILD-TYPE    191     71     92
D87V8, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1             26              191
  CLUS_2              4               71
  CLUS_3              7               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CELSR1 MUTATED       10      5     11
  CELSR1 WILD-TYPE    111    103     61
D87V9, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1             10              111
  CLUS_2              5              103
  CLUS_3             11               61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CELSR1 MUTATED        9      3      6      2      6
  CELSR1 WILD-TYPE     79     63     39     53     41
D87V10, multiclass
        clus
vv       CELSR1 MUTATED CELSR1 WILD-TYPE
  CLUS_1              9               79
  CLUS_2              3               63
  CLUS_3              6               39
  CLUS_4              2               53
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(88) Variable = YIPF2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF2 MUTATED        2      3      2      0
  YIPF2 WILD-TYPE    202    134     45      3
D88V1, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             3             134
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIPF2 MUTATED        1      3      0      1      0
  YIPF2 WILD-TYPE     38     93     44     87     80
D88V2, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIPF2 MUTATED        1      1      2      1      1
  YIPF2 WILD-TYPE     25     78     71     81     57
D88V3, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF2 MUTATED        2      3      0      1
  YIPF2 WILD-TYPE    125     48     71     68
D88V4, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             3              48
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIPF2 MUTATED        0      0      3      1      2
  YIPF2 WILD-TYPE     84     85     82     68     45
D88V5, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIPF2 MUTATED        2      1      0      3
  YIPF2 WILD-TYPE     93     73    121     77
D88V6, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  YIPF2 MUTATED        3      2      0      1      1      0
  YIPF2 WILD-TYPE     49     62     72    103     39     59
D88V7, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             2              62
  CLUS_3             0              72
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIPF2 MUTATED        5      0      2
  YIPF2 WILD-TYPE    212     75     97
D88V8, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIPF2 MUTATED        2      1      0
  YIPF2 WILD-TYPE    119    107     72
D88V9, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIPF2 MUTATED        1      0      0      1      1
  YIPF2 WILD-TYPE     87     66     45     54     46
D88V10, multiclass
        clus
vv       YIPF2 MUTATED YIPF2 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             1              54
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(89) Variable = CR1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR1 MUTATED        7     19      4      0
  CR1 WILD-TYPE    197    118     43      3
D89V1, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           7           197
  CLUS_2          19           118
  CLUS_3           4            43
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1 MUTATED        2     11      7      1      3
  CR1 WILD-TYPE     37     85     37     87     77
D89V2, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           2            37
  CLUS_2          11            85
  CLUS_3           7            37
  CLUS_4           1            87
  CLUS_5           3            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1 MUTATED        1     15      5      2      4
  CR1 WILD-TYPE     25     64     68     80     54
D89V3, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           1            25
  CLUS_2          15            64
  CLUS_3           5            68
  CLUS_4           2            80
  CLUS_5           4            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR1 MUTATED        5      9      9      4
  CR1 WILD-TYPE    122     42     62     65
D89V4, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           5           122
  CLUS_2           9            42
  CLUS_3           9            62
  CLUS_4           4            65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1 MUTATED        1      6     15      4      3
  CR1 WILD-TYPE     83     79     70     65     44
D89V5, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           1            83
  CLUS_2           6            79
  CLUS_3          15            70
  CLUS_4           4            65
  CLUS_5           3            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR1 MUTATED        8      4      3     14
  CR1 WILD-TYPE     87     70    118     66
D89V6, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           8            87
  CLUS_2           4            70
  CLUS_3           3           118
  CLUS_4          14            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CR1 MUTATED        6      8      7      6      3      0
  CR1 WILD-TYPE     46     56     65     98     37     59
D89V7, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           6            46
  CLUS_2           8            56
  CLUS_3           7            65
  CLUS_4           6            98
  CLUS_5           3            37
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CR1 MUTATED       25      4      1
  CR1 WILD-TYPE    192     71     98
D89V8, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1          25           192
  CLUS_2           4            71
  CLUS_3           1            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CR1 MUTATED        8      4      7
  CR1 WILD-TYPE    113    104     65
D89V9, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1           8           113
  CLUS_2           4           104
  CLUS_3           7            65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1 MUTATED       10      2      3      1      3
  CR1 WILD-TYPE     78     64     42     54     44
D89V10, multiclass
        clus
vv       CR1 MUTATED CR1 WILD-TYPE
  CLUS_1          10            78
  CLUS_2           2            64
  CLUS_3           3            42
  CLUS_4           1            54
  CLUS_5           3            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(90) Variable = C19ORF40 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF40 MUTATED        2      4      1      0
  C19ORF40 WILD-TYPE    202    133     46      3
D90V1, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                2                202
  CLUS_2                4                133
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF40 MUTATED        1      1      0      1      1
  C19ORF40 WILD-TYPE     38     95     44     87     79
D90V2, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                1                 95
  CLUS_3                0                 44
  CLUS_4                1                 87
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF40 MUTATED        2      4      1      0      0
  C19ORF40 WILD-TYPE     24     75     72     82     58
D90V3, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                4                 75
  CLUS_3                1                 72
  CLUS_4                0                 82
  CLUS_5                0                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF40 MUTATED        2      3      2      0
  C19ORF40 WILD-TYPE    125     48     69     69
D90V4, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                3                 48
  CLUS_3                2                 69
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF40 MUTATED        0      1      2      1      2
  C19ORF40 WILD-TYPE     84     84     83     68     45
D90V5, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                2                 83
  CLUS_4                1                 68
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF40 MUTATED        2      1      1      2
  C19ORF40 WILD-TYPE     93     73    120     78
D90V6, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                2                 78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C19ORF40 MUTATED        1      4      0      0      1      0
  C19ORF40 WILD-TYPE     51     60     72    104     39     59
D90V7, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                4                 60
  CLUS_3                0                 72
  CLUS_4                0                104
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF40 MUTATED        6      0      0
  C19ORF40 WILD-TYPE    211     75     99
D90V8, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                6                211
  CLUS_2                0                 75
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF40 MUTATED        2      0      1
  C19ORF40 WILD-TYPE    119    108     71
D90V9, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                2                119
  CLUS_2                0                108
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF40 MUTATED        0      0      1      0      2
  C19ORF40 WILD-TYPE     88     66     44     55     45
D90V10, multiclass
        clus
vv       C19ORF40 MUTATED C19ORF40 WILD-TYPE
  CLUS_1                0                 88
  CLUS_2                0                 66
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(91) Variable = WNT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT1 MUTATED        2      7      0      0
  WNT1 WILD-TYPE    202    130     47      3
D91V1, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            2            202
  CLUS_2            7            130
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT1 MUTATED        1      6      2      1      0
  WNT1 WILD-TYPE     38     90     42     87     80
D91V2, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            6             90
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT1 MUTATED        1      1      3      0      1
  WNT1 WILD-TYPE     25     78     70     82     57
D91V3, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             78
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT1 MUTATED        3      1      1      1
  WNT1 WILD-TYPE    124     50     70     68
D91V4, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            1             50
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT1 MUTATED        0      2      4      3      1
  WNT1 WILD-TYPE     84     83     81     66     46
D91V5, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            4             81
  CLUS_4            3             66
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT1 MUTATED        3      1      0      6
  WNT1 WILD-TYPE     92     73    121     74
D91V6, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WNT1 MUTATED        5      2      1      0      1      1
  WNT1 WILD-TYPE     47     62     71    104     39     58
D91V7, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            5             47
  CLUS_2            2             62
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT1 MUTATED        8      0      2
  WNT1 WILD-TYPE    209     75     97
D91V8, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            8            209
  CLUS_2            0             75
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT1 MUTATED        6      0      3
  WNT1 WILD-TYPE    115    108     69
D91V9, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            6            115
  CLUS_2            0            108
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT1 MUTATED        3      0      2      0      4
  WNT1 WILD-TYPE     85     66     43     55     43
D91V10, multiclass
        clus
vv       WNT1 MUTATED WNT1 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(92) Variable = IRF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRF2 MUTATED        4     15      0      0
  IRF2 WILD-TYPE    200    122     47      3
D92V1, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            4            200
  CLUS_2           15            122
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRF2 MUTATED        1      5      4      2      2
  IRF2 WILD-TYPE     38     91     40     86     78
D92V2, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            5             91
  CLUS_3            4             40
  CLUS_4            2             86
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRF2 MUTATED        1     10      2      3      2
  IRF2 WILD-TYPE     25     69     71     79     56
D92V3, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2           10             69
  CLUS_3            2             71
  CLUS_4            3             79
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRF2 MUTATED        3      7      6      2
  IRF2 WILD-TYPE    124     44     65     67
D92V4, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            7             44
  CLUS_3            6             65
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRF2 MUTATED        1      3      8      3      0
  IRF2 WILD-TYPE     83     82     77     66     47
D92V5, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            3             82
  CLUS_3            8             77
  CLUS_4            3             66
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRF2 MUTATED        5      4      1      5
  IRF2 WILD-TYPE     90     70    120     75
D92V6, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            5             90
  CLUS_2            4             70
  CLUS_3            1            120
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRF2 MUTATED        2      9      5      2      1      0
  IRF2 WILD-TYPE     50     55     67    102     39     59
D92V7, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            9             55
  CLUS_3            5             67
  CLUS_4            2            102
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED       18      1      0
  IRF2 WILD-TYPE    199     74     99
D92V8, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1           18            199
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRF2 MUTATED        5      2      6
  IRF2 WILD-TYPE    116    106     66
D92V9, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            2            106
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRF2 MUTATED        5      1      4      0      3
  IRF2 WILD-TYPE     83     65     41     55     44
D92V10, multiclass
        clus
vv       IRF2 MUTATED IRF2 WILD-TYPE
  CLUS_1            5             83
  CLUS_2            1             65
  CLUS_3            4             41
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(93) Variable = CR2 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR2 MUTATED        7     15      1      0
  CR2 WILD-TYPE    197    122     46      3
D93V1, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1           7           197
  CLUS_2          15           122
  CLUS_3           1            46
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR2 MUTATED        3     10      4      3      2
  CR2 WILD-TYPE     36     86     40     85     78
D93V2, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1           3            36
  CLUS_2          10            86
  CLUS_3           4            40
  CLUS_4           3            85
  CLUS_5           2            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR2 MUTATED        1      8      5      0      4
  CR2 WILD-TYPE     25     71     68     82     54
D93V3, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1           1            25
  CLUS_2           8            71
  CLUS_3           5            68
  CLUS_4           0            82
  CLUS_5           4            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR2 MUTATED        4      8      6      0
  CR2 WILD-TYPE    123     43     65     69
D93V4, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1           4           123
  CLUS_2           8            43
  CLUS_3           6            65
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR2 MUTATED        2      1     13      4      2
  CR2 WILD-TYPE     82     84     72     65     45
D93V5, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1           2            82
  CLUS_2           1            84
  CLUS_3          13            72
  CLUS_4           4            65
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR2 MUTATED        6      1      4     11
  CR2 WILD-TYPE     89     73    117     69
D93V6, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1           6            89
  CLUS_2           1            73
  CLUS_3           4           117
  CLUS_4          11            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CR2 MUTATED       10      6      4      0      1      2
  CR2 WILD-TYPE     42     58     68    104     39     57
D93V7, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1          10            42
  CLUS_2           6            58
  CLUS_3           4            68
  CLUS_4           0           104
  CLUS_5           1            39
  CLUS_6           2            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CR2 MUTATED       20      1      2
  CR2 WILD-TYPE    197     74     97
D93V8, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1          20           197
  CLUS_2           1            74
  CLUS_3           2            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CR2 MUTATED       12      2      4
  CR2 WILD-TYPE    109    106     68
D93V9, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1          12           109
  CLUS_2           2           106
  CLUS_3           4            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR2 MUTATED        6      0      4      1      7
  CR2 WILD-TYPE     82     66     41     54     40
D93V10, multiclass
        clus
vv       CR2 MUTATED CR2 WILD-TYPE
  CLUS_1           6            82
  CLUS_2           0            66
  CLUS_3           4            41
  CLUS_4           1            54
  CLUS_5           7            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(94) Variable = LEMD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEMD1 MUTATED        0      2      1      0
  LEMD1 WILD-TYPE    204    135     46      3
D94V1, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             2             135
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LEMD1 MUTATED        0      4      0      0      0
  LEMD1 WILD-TYPE     39     92     44     88     80
D94V2, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LEMD1 MUTATED        0      1      1      0      1
  LEMD1 WILD-TYPE     26     78     72     82     57
D94V3, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEMD1 MUTATED        0      3      0      0
  LEMD1 WILD-TYPE    127     48     71     69
D94V4, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             3              48
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LEMD1 MUTATED        0      0      3      0      0
  LEMD1 WILD-TYPE     84     85     82     69     47
D94V5, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEMD1 MUTATED        1      0      0      2
  LEMD1 WILD-TYPE     94     74    121     78
D94V6, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LEMD1 MUTATED        1      1      2      0      0      0
  LEMD1 WILD-TYPE     51     63     70    104     40     59
D94V7, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             1              63
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LEMD1 MUTATED        4      0      0
  LEMD1 WILD-TYPE    213     75     99
D94V8, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LEMD1 MUTATED        1      0      3
  LEMD1 WILD-TYPE    120    108     69
D94V9, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             0             108
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LEMD1 MUTATED        0      0      1      0      3
  LEMD1 WILD-TYPE     88     66     44     55     44
D94V10, multiclass
        clus
vv       LEMD1 MUTATED LEMD1 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(95) Variable = INF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INF2 MUTATED        3     13      3      0
  INF2 WILD-TYPE    201    124     44      3
D95V1, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            3            201
  CLUS_2           13            124
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INF2 MUTATED        2     10      1      1      2
  INF2 WILD-TYPE     37     86     43     87     78
D95V2, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            2             37
  CLUS_2           10             86
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INF2 MUTATED        3      4      1      1      6
  INF2 WILD-TYPE     23     75     72     81     52
D95V3, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            3             23
  CLUS_2            4             75
  CLUS_3            1             72
  CLUS_4            1             81
  CLUS_5            6             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INF2 MUTATED        6      5      2      2
  INF2 WILD-TYPE    121     46     69     67
D95V4, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            6            121
  CLUS_2            5             46
  CLUS_3            2             69
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INF2 MUTATED        3      2      9      3      2
  INF2 WILD-TYPE     81     83     76     66     45
D95V5, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            3             81
  CLUS_2            2             83
  CLUS_3            9             76
  CLUS_4            3             66
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INF2 MUTATED        5      1      4      9
  INF2 WILD-TYPE     90     73    117     71
D95V6, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            5             90
  CLUS_2            1             73
  CLUS_3            4            117
  CLUS_4            9             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  INF2 MUTATED        4      6      4      1      2      2
  INF2 WILD-TYPE     48     58     68    103     38     57
D95V7, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            6             58
  CLUS_3            4             68
  CLUS_4            1            103
  CLUS_5            2             38
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  INF2 MUTATED       14      2      3
  INF2 WILD-TYPE    203     73     96
D95V8, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1           14            203
  CLUS_2            2             73
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  INF2 MUTATED        6      2      5
  INF2 WILD-TYPE    115    106     67
D95V9, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            6            115
  CLUS_2            2            106
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INF2 MUTATED        3      0      4      1      5
  INF2 WILD-TYPE     85     66     41     54     42
D95V10, multiclass
        clus
vv       INF2 MUTATED INF2 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            4             41
  CLUS_4            1             54
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(96) Variable = CR1L MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR1L MUTATED        7      9      0      0
  CR1L WILD-TYPE    197    128     47      3
D96V1, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            7            197
  CLUS_2            9            128
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1L MUTATED        0      6      3      2      3
  CR1L WILD-TYPE     39     90     41     86     77
D96V2, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            0             39
  CLUS_2            6             90
  CLUS_3            3             41
  CLUS_4            2             86
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1L MUTATED        1      4      4      3      2
  CR1L WILD-TYPE     25     75     69     79     56
D96V3, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             75
  CLUS_3            4             69
  CLUS_4            3             79
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR1L MUTATED        6      3      2      3
  CR1L WILD-TYPE    121     48     69     66
D96V4, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            6            121
  CLUS_2            3             48
  CLUS_3            2             69
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1L MUTATED        2      3      7      3      1
  CR1L WILD-TYPE     82     82     78     66     46
D96V5, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            2             82
  CLUS_2            3             82
  CLUS_3            7             78
  CLUS_4            3             66
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CR1L MUTATED        4      5      4      3
  CR1L WILD-TYPE     91     69    117     77
D96V6, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            4             91
  CLUS_2            5             69
  CLUS_3            4            117
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CR1L MUTATED        4      7      0      1      2      2
  CR1L WILD-TYPE     48     57     72    103     38     57
D96V7, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            4             48
  CLUS_2            7             57
  CLUS_3            0             72
  CLUS_4            1            103
  CLUS_5            2             38
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CR1L MUTATED       10      3      3
  CR1L WILD-TYPE    207     72     96
D96V8, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1           10            207
  CLUS_2            3             72
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CR1L MUTATED        1      3      7
  CR1L WILD-TYPE    120    105     65
D96V9, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            1            120
  CLUS_2            3            105
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CR1L MUTATED        2      2      4      1      2
  CR1L WILD-TYPE     86     64     41     54     45
D96V10, multiclass
        clus
vv       CR1L MUTATED CR1L WILD-TYPE
  CLUS_1            2             86
  CLUS_2            2             64
  CLUS_3            4             41
  CLUS_4            1             54
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(97) Variable = NPHP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPHP1 MUTATED        0      8      1      1
  NPHP1 WILD-TYPE    204    129     46      2
D97V1, multiclass
        clus
vv       NPHP1 MUTATED NPHP1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             1               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPHP1 MUTATED        0      3      2      0      1
  NPHP1 WILD-TYPE     39     93     42     88     79
D97V2, multiclass
        clus
vv       NPHP1 MUTATED NPHP1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPHP1 MUTATED        0      3      0      1      2
  NPHP1 WILD-TYPE     26     76     73     81     56
D97V3, multiclass
        clus
vv       NPHP1 MUTATED NPHP1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             0              73
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPHP1 MUTATED        1      2      2      1
  NPHP1 WILD-TYPE    126     49     69     68
D97V4, multiclass
        clus
vv       NPHP1 MUTATED NPHP1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             2              49
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPHP1 MUTATED        0      1      5      2      1
  NPHP1 WILD-TYPE     84     84     80     67     46
D97V5, multiclass
        clus
vv       NPHP1 MUTATED NPHP1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             5              80
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPHP1 MUTATED        2      1      1      5
  NPHP1 WILD-TYPE     93     73    120     75
D97V6, multiclass
        clus
vv       NPHP1 MUTATED NPHP1 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NPHP1 MUTATED        1      5      3      1      0      0
  NPHP1 WILD-TYPE     51     59     69    103     40     59
D97V7, multiclass
        clus
vv       NPHP1 MUTATED NPHP1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             5              59
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NPHP1 MUTATED        9      0      1
  NPHP1 WILD-TYPE    208     75     98
D97V8, multiclass
        clus
vv       NPHP1 MUTATED NPHP1 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NPHP1 MUTATED        3      1      0
  NPHP1 WILD-TYPE    118    107     72
D97V9, multiclass
        clus
vv       NPHP1 MUTATED NPHP1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPHP1 MUTATED        2      0      0      0      2
  NPHP1 WILD-TYPE     86     66     45     55     45
D97V10, multiclass
        clus
vv       NPHP1 MUTATED NPHP1 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(98) Variable = ADAMDEC1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMDEC1 MUTATED        0     12      0      0
  ADAMDEC1 WILD-TYPE    204    125     47      3
D98V1, multiclass
        clus
vv       ADAMDEC1 MUTATED ADAMDEC1 WILD-TYPE
  CLUS_1                0                204
  CLUS_2               12                125
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAMDEC1 MUTATED        1      6      1      0      1
  ADAMDEC1 WILD-TYPE     38     90     43     88     79
D98V2, multiclass
        clus
vv       ADAMDEC1 MUTATED ADAMDEC1 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                6                 90
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAMDEC1 MUTATED        2      2      4      0      3
  ADAMDEC1 WILD-TYPE     24     77     69     82     55
D98V3, multiclass
        clus
vv       ADAMDEC1 MUTATED ADAMDEC1 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                2                 77
  CLUS_3                4                 69
  CLUS_4                0                 82
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMDEC1 MUTATED        4      5      2      0
  ADAMDEC1 WILD-TYPE    123     46     69     69
D98V4, multiclass
        clus
vv       ADAMDEC1 MUTATED ADAMDEC1 WILD-TYPE
  CLUS_1                4                123
  CLUS_2                5                 46
  CLUS_3                2                 69
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAMDEC1 MUTATED        1      2      5      0      3
  ADAMDEC1 WILD-TYPE     83     83     80     69     44
D98V5, multiclass
        clus
vv       ADAMDEC1 MUTATED ADAMDEC1 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 83
  CLUS_3                5                 80
  CLUS_4                0                 69
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMDEC1 MUTATED        3      1      1      6
  ADAMDEC1 WILD-TYPE     92     73    120     74
D98V6, multiclass
        clus
vv       ADAMDEC1 MUTATED ADAMDEC1 WILD-TYPE
  CLUS_1                3                 92
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                6                 74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADAMDEC1 MUTATED        4      3      2      2      0      1
  ADAMDEC1 WILD-TYPE     48     61     70    102     40     58
D98V7, multiclass
        clus
vv       ADAMDEC1 MUTATED ADAMDEC1 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                3                 61
  CLUS_3                2                 70
  CLUS_4                2                102
  CLUS_5                0                 40
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMDEC1 MUTATED        9      2      1
  ADAMDEC1 WILD-TYPE    208     73     98
D98V8, multiclass
        clus
vv       ADAMDEC1 MUTATED ADAMDEC1 WILD-TYPE
  CLUS_1                9                208
  CLUS_2                2                 73
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMDEC1 MUTATED        5      1      3
  ADAMDEC1 WILD-TYPE    116    107     69
D98V9, multiclass
        clus
vv       ADAMDEC1 MUTATED ADAMDEC1 WILD-TYPE
  CLUS_1                5                116
  CLUS_2                1                107
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAMDEC1 MUTATED        2      2      1      0      4
  ADAMDEC1 WILD-TYPE     86     64     44     55     43
D98V10, multiclass
        clus
vv       ADAMDEC1 MUTATED ADAMDEC1 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                2                 64
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(99) Variable = GXYLT1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GXYLT1 MUTATED        2     11      1      0
  GXYLT1 WILD-TYPE    202    126     46      3
D99V1, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              2              202
  CLUS_2             11              126
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GXYLT1 MUTATED        1      8      3      0      1
  GXYLT1 WILD-TYPE     38     88     41     88     79
D99V2, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              8               88
  CLUS_3              3               41
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GXYLT1 MUTATED        0      7      5      0      2
  GXYLT1 WILD-TYPE     26     72     68     82     56
D99V3, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              7               72
  CLUS_3              5               68
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GXYLT1 MUTATED        2      7      4      1
  GXYLT1 WILD-TYPE    125     44     67     68
D99V4, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              7               44
  CLUS_3              4               67
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GXYLT1 MUTATED        0      2      8      1      2
  GXYLT1 WILD-TYPE     84     83     77     68     45
D99V5, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              8               77
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GXYLT1 MUTATED        3      3      0      7
  GXYLT1 WILD-TYPE     92     71    121     73
D99V6, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              3               71
  CLUS_3              0              121
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GXYLT1 MUTATED        2      6      3      3      0      0
  GXYLT1 WILD-TYPE     50     58     69    101     40     59
D99V7, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              6               58
  CLUS_3              3               69
  CLUS_4              3              101
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GXYLT1 MUTATED       12      1      1
  GXYLT1 WILD-TYPE    205     74     98
D99V8, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1             12              205
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GXYLT1 MUTATED        3      3      6
  GXYLT1 WILD-TYPE    118    105     66
D99V9, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              3              105
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GXYLT1 MUTATED        3      1      3      1      4
  GXYLT1 WILD-TYPE     85     65     42     54     43
D99V10, multiclass
        clus
vv       GXYLT1 MUTATED GXYLT1 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              3               42
  CLUS_4              1               54
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(100) Variable = ENTPD2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTPD2 MUTATED        1      5      0      0
  ENTPD2 WILD-TYPE    203    132     47      3
D100V1, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENTPD2 MUTATED        0      4      1      0      0
  ENTPD2 WILD-TYPE     39     92     43     88     80
D100V2, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENTPD2 MUTATED        0      1      3      0      1
  ENTPD2 WILD-TYPE     26     78     70     82     57
D100V3, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTPD2 MUTATED        2      2      0      1
  ENTPD2 WILD-TYPE    125     49     71     68
D100V4, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              2               49
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENTPD2 MUTATED        0      2      2      2      0
  ENTPD2 WILD-TYPE     84     83     83     67     47
D100V5, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              2               83
  CLUS_4              2               67
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ENTPD2 MUTATED        2      3      0      1
  ENTPD2 WILD-TYPE     93     71    121     79
D100V6, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              3               71
  CLUS_3              0              121
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ENTPD2 MUTATED        1      2      0      1      2      0
  ENTPD2 WILD-TYPE     51     62     72    103     38     59
D100V7, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENTPD2 MUTATED        4      1      1
  ENTPD2 WILD-TYPE    213     74     98
D100V8, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              4              213
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ENTPD2 MUTATED        2      1      1
  ENTPD2 WILD-TYPE    119    107     71
D100V9, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              1              107
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ENTPD2 MUTATED        1      1      1      0      1
  ENTPD2 WILD-TYPE     87     65     44     55     46
D100V10, multiclass
        clus
vv       ENTPD2 MUTATED ENTPD2 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(101) Variable = EIF4G3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4G3 MUTATED        2     15      2      0
  EIF4G3 WILD-TYPE    202    122     45      3
D101V1, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              2              202
  CLUS_2             15              122
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF4G3 MUTATED        1     11      3      2      1
  EIF4G3 WILD-TYPE     38     85     41     86     79
D101V2, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              1               38
  CLUS_2             11               85
  CLUS_3              3               41
  CLUS_4              2               86
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF4G3 MUTATED        1      3      5      1      5
  EIF4G3 WILD-TYPE     25     76     68     81     53
D101V3, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              5               68
  CLUS_4              1               81
  CLUS_5              5               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4G3 MUTATED        2      6      3      4
  EIF4G3 WILD-TYPE    125     45     68     65
D101V4, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              6               45
  CLUS_3              3               68
  CLUS_4              4               65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF4G3 MUTATED        2      2     11      2      3
  EIF4G3 WILD-TYPE     82     83     74     67     44
D101V5, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              2               83
  CLUS_3             11               74
  CLUS_4              2               67
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF4G3 MUTATED        6      2      2     10
  EIF4G3 WILD-TYPE     89     72    119     70
D101V6, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              6               89
  CLUS_2              2               72
  CLUS_3              2              119
  CLUS_4             10               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EIF4G3 MUTATED        5      5      3      3      3      1
  EIF4G3 WILD-TYPE     47     59     69    101     37     58
D101V7, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              5               59
  CLUS_3              3               69
  CLUS_4              3              101
  CLUS_5              3               37
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF4G3 MUTATED       16      1      3
  EIF4G3 WILD-TYPE    201     74     96
D101V8, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1             16              201
  CLUS_2              1               74
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF4G3 MUTATED        9      3      6
  EIF4G3 WILD-TYPE    112    105     66
D101V9, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              9              112
  CLUS_2              3              105
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF4G3 MUTATED        9      0      2      1      6
  EIF4G3 WILD-TYPE     79     66     43     54     41
D101V10, multiclass
        clus
vv       EIF4G3 MUTATED EIF4G3 WILD-TYPE
  CLUS_1              9               79
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(102) Variable = PIGT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGT MUTATED        1      9      1      0
  PIGT WILD-TYPE    203    128     46      3
D102V1, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            1            203
  CLUS_2            9            128
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGT MUTATED        1      7      1      1      1
  PIGT WILD-TYPE     38     89     43     87     79
D102V2, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            1             38
  CLUS_2            7             89
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGT MUTATED        1      4      1      1      1
  PIGT WILD-TYPE     25     75     72     81     57
D102V3, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             75
  CLUS_3            1             72
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGT MUTATED        1      2      4      1
  PIGT WILD-TYPE    126     49     67     68
D102V4, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            1            126
  CLUS_2            2             49
  CLUS_3            4             67
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGT MUTATED        0      0      7      2      1
  PIGT WILD-TYPE     84     85     78     67     46
D102V5, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            7             78
  CLUS_4            2             67
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGT MUTATED        2      1      1      6
  PIGT WILD-TYPE     93     73    120     74
D102V6, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            2             93
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIGT MUTATED        3      3      2      3      0      0
  PIGT WILD-TYPE     49     61     70    101     40     59
D102V7, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            3             49
  CLUS_2            3             61
  CLUS_3            2             70
  CLUS_4            3            101
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGT MUTATED        7      2      2
  PIGT WILD-TYPE    210     73     97
D102V8, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            7            210
  CLUS_2            2             73
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGT MUTATED        2      2      6
  PIGT WILD-TYPE    119    106     66
D102V9, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            2            119
  CLUS_2            2            106
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGT MUTATED        1      1      2      1      5
  PIGT WILD-TYPE     87     65     43     54     42
D102V10, multiclass
        clus
vv       PIGT MUTATED PIGT WILD-TYPE
  CLUS_1            1             87
  CLUS_2            1             65
  CLUS_3            2             43
  CLUS_4            1             54
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(103) Variable = POLM MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLM MUTATED        1     12      0      0
  POLM WILD-TYPE    203    125     47      3
D103V1, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            1            203
  CLUS_2           12            125
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POLM MUTATED        0      7      2      1      1
  POLM WILD-TYPE     39     89     42     87     79
D103V2, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            0             39
  CLUS_2            7             89
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POLM MUTATED        0      4      5      0      1
  POLM WILD-TYPE     26     75     68     82     57
D103V3, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            5             68
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLM MUTATED        1      5      3      1
  POLM WILD-TYPE    126     46     68     68
D103V4, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            1            126
  CLUS_2            5             46
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POLM MUTATED        1      4      6      1      1
  POLM WILD-TYPE     83     81     79     68     46
D103V5, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            1             83
  CLUS_2            4             81
  CLUS_3            6             79
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLM MUTATED        3      2      2      6
  POLM WILD-TYPE     92     72    119     74
D103V6, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            3             92
  CLUS_2            2             72
  CLUS_3            2            119
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POLM MUTATED        5      5      1      1      1      0
  POLM WILD-TYPE     47     59     71    103     39     59
D103V7, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            5             47
  CLUS_2            5             59
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLM MUTATED       11      1      1
  POLM WILD-TYPE    206     74     98
D103V8, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1           11            206
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POLM MUTATED        3      2      4
  POLM WILD-TYPE    118    106     68
D103V9, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            3            118
  CLUS_2            2            106
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POLM MUTATED        4      0      2      0      3
  POLM WILD-TYPE     84     66     43     55     44
D103V10, multiclass
        clus
vv       POLM MUTATED POLM WILD-TYPE
  CLUS_1            4             84
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(104) Variable = CCDC108 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC108 MUTATED        4     20      1      0
  CCDC108 WILD-TYPE    200    117     46      3
D104V1, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               4               200
  CLUS_2              20               117
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC108 MUTATED        1     14      2      2      2
  CCDC108 WILD-TYPE     38     82     42     86     78
D104V2, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               1                38
  CLUS_2              14                82
  CLUS_3               2                42
  CLUS_4               2                86
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC108 MUTATED        2      9      7      0      3
  CCDC108 WILD-TYPE     24     70     66     82     55
D104V3, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               9                70
  CLUS_3               7                66
  CLUS_4               0                82
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC108 MUTATED        8      9      4      0
  CCDC108 WILD-TYPE    119     42     67     69
D104V4, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               8               119
  CLUS_2               9                42
  CLUS_3               4                67
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC108 MUTATED        1      0     16      3      5
  CCDC108 WILD-TYPE     83     85     69     66     42
D104V5, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                85
  CLUS_3              16                69
  CLUS_4               3                66
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC108 MUTATED        7      2      3     13
  CCDC108 WILD-TYPE     88     72    118     67
D104V6, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               7                88
  CLUS_2               2                72
  CLUS_3               3               118
  CLUS_4              13                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC108 MUTATED       11      9      3      1      0      2
  CCDC108 WILD-TYPE     41     55     69    103     40     57
D104V7, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1              11                41
  CLUS_2               9                55
  CLUS_3               3                69
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               2                57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC108 MUTATED       23      0      3
  CCDC108 WILD-TYPE    194     75     96
D104V8, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1              23               194
  CLUS_2               0                75
  CLUS_3               3                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC108 MUTATED       13      3      4
  CCDC108 WILD-TYPE    108    105     68
D104V9, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1              13               108
  CLUS_2               3               105
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC108 MUTATED        5      0      3      3      9
  CCDC108 WILD-TYPE     83     66     42     52     38
D104V10, multiclass
        clus
vv       CCDC108 MUTATED CCDC108 WILD-TYPE
  CLUS_1               5                83
  CLUS_2               0                66
  CLUS_3               3                42
  CLUS_4               3                52
  CLUS_5               9                38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(105) Variable = KIAA0195 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0195 MUTATED        1     15      3      0
  KIAA0195 WILD-TYPE    203    122     44      3
D105V1, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                1                203
  CLUS_2               15                122
  CLUS_3                3                 44
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0195 MUTATED        1     16      1      0      0
  KIAA0195 WILD-TYPE     38     80     43     88     80
D105V2, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2               16                 80
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0195 MUTATED        0      4      9      0      5
  KIAA0195 WILD-TYPE     26     75     64     82     53
D105V3, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                4                 75
  CLUS_3                9                 64
  CLUS_4                0                 82
  CLUS_5                5                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0195 MUTATED        3     14      1      0
  KIAA0195 WILD-TYPE    124     37     70     69
D105V4, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                3                124
  CLUS_2               14                 37
  CLUS_3                1                 70
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0195 MUTATED        0      3     12      1      4
  KIAA0195 WILD-TYPE     84     82     73     68     43
D105V5, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                3                 82
  CLUS_3               12                 73
  CLUS_4                1                 68
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0195 MUTATED        3      3      0     14
  KIAA0195 WILD-TYPE     92     71    121     66
D105V6, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                3                 92
  CLUS_2                3                 71
  CLUS_3                0                121
  CLUS_4               14                 66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0195 MUTATED       10      4      3      3      0      0
  KIAA0195 WILD-TYPE     42     60     69    101     40     59
D105V7, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1               10                 42
  CLUS_2                4                 60
  CLUS_3                3                 69
  CLUS_4                3                101
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0195 MUTATED       18      1      1
  KIAA0195 WILD-TYPE    199     74     98
D105V8, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1               18                199
  CLUS_2                1                 74
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0195 MUTATED        9      1      4
  KIAA0195 WILD-TYPE    112    107     68
D105V9, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                9                112
  CLUS_2                1                107
  CLUS_3                4                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0195 MUTATED        1      1      2      0     10
  KIAA0195 WILD-TYPE     87     65     43     55     37
D105V10, multiclass
        clus
vv       KIAA0195 MUTATED KIAA0195 WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                1                 65
  CLUS_3                2                 43
  CLUS_4                0                 55
  CLUS_5               10                 37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(106) Variable = CDH16 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH16 MUTATED        4     10      2      0
  CDH16 WILD-TYPE    200    127     45      3
D106V1, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            10             127
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH16 MUTATED        3      8      2      1      0
  CDH16 WILD-TYPE     36     88     42     87     80
D106V2, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             8              88
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH16 MUTATED        0      6      4      1      4
  CDH16 WILD-TYPE     26     73     69     81     54
D106V3, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             6              73
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH16 MUTATED        5      6      4      0
  CDH16 WILD-TYPE    122     45     67     69
D106V4, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             6              45
  CLUS_3             4              67
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH16 MUTATED        1      1      8      2      3
  CDH16 WILD-TYPE     83     84     77     67     44
D106V5, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             8              77
  CLUS_4             2              67
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH16 MUTATED        2      1      2     10
  CDH16 WILD-TYPE     93     73    119     70
D106V6, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4            10              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDH16 MUTATED        7      3      2      3      1      0
  CDH16 WILD-TYPE     45     61     70    101     39     59
D106V7, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             7              45
  CLUS_2             3              61
  CLUS_3             2              70
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH16 MUTATED       13      1      2
  CDH16 WILD-TYPE    204     74     97
D106V8, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1            13             204
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH16 MUTATED        6      1      3
  CDH16 WILD-TYPE    115    107     69
D106V9, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH16 MUTATED        4      0      2      0      4
  CDH16 WILD-TYPE     84     66     43     55     43
D106V10, multiclass
        clus
vv       CDH16 MUTATED CDH16 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(107) Variable = ARHGAP5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP5 MUTATED        4     15      3      0
  ARHGAP5 WILD-TYPE    200    122     44      3
D107V1, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               4               200
  CLUS_2              15               122
  CLUS_3               3                44
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP5 MUTATED        1     10      4      1      2
  ARHGAP5 WILD-TYPE     38     86     40     87     78
D107V2, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               1                38
  CLUS_2              10                86
  CLUS_3               4                40
  CLUS_4               1                87
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP5 MUTATED        0      7      5      4      3
  ARHGAP5 WILD-TYPE     26     72     68     78     55
D107V3, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               7                72
  CLUS_3               5                68
  CLUS_4               4                78
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP5 MUTATED        6      6      4      3
  ARHGAP5 WILD-TYPE    121     45     67     66
D107V4, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               6               121
  CLUS_2               6                45
  CLUS_3               4                67
  CLUS_4               3                66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP5 MUTATED        1      6     10      2      3
  ARHGAP5 WILD-TYPE     83     79     75     67     44
D107V5, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               6                79
  CLUS_3              10                75
  CLUS_4               2                67
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP5 MUTATED        4      4      3     11
  ARHGAP5 WILD-TYPE     91     70    118     69
D107V6, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               4                70
  CLUS_3               3               118
  CLUS_4              11                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARHGAP5 MUTATED        4      4      6      7      0      1
  ARHGAP5 WILD-TYPE     48     60     66     97     40     58
D107V7, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               4                60
  CLUS_3               6                66
  CLUS_4               7                97
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGAP5 MUTATED       16      3      3
  ARHGAP5 WILD-TYPE    201     72     96
D107V8, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1              16               201
  CLUS_2               3                72
  CLUS_3               3                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGAP5 MUTATED        6      6      3
  ARHGAP5 WILD-TYPE    115    102     69
D107V9, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               6               115
  CLUS_2               6               102
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP5 MUTATED        1      2      1      3      8
  ARHGAP5 WILD-TYPE     87     64     44     52     39
D107V10, multiclass
        clus
vv       ARHGAP5 MUTATED ARHGAP5 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               2                64
  CLUS_3               1                44
  CLUS_4               3                52
  CLUS_5               8                39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(108) Variable = STK38 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38 MUTATED        1      5      0      0
  STK38 WILD-TYPE    203    132     47      3
D108V1, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             5             132
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK38 MUTATED        0      4      0      0      1
  STK38 WILD-TYPE     39     92     44     88     79
D108V2, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK38 MUTATED        1      3      2      0      0
  STK38 WILD-TYPE     25     76     71     82     58
D108V3, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38 MUTATED        1      5      0      0
  STK38 WILD-TYPE    126     46     71     69
D108V4, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             5              46
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK38 MUTATED        0      0      4      0      2
  STK38 WILD-TYPE     84     85     81     69     45
D108V5, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             4              81
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK38 MUTATED        1      0      1      4
  STK38 WILD-TYPE     94     74    120     76
D108V6, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STK38 MUTATED        1      3      2      0      0      0
  STK38 WILD-TYPE     51     61     70    104     40     59
D108V7, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             3              61
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK38 MUTATED        6      0      0
  STK38 WILD-TYPE    211     75     99
D108V8, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK38 MUTATED        3      0      2
  STK38 WILD-TYPE    118    108     70
D108V9, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK38 MUTATED        1      0      2      0      2
  STK38 WILD-TYPE     87     66     43     55     45
D108V10, multiclass
        clus
vv       STK38 MUTATED STK38 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(109) Variable = CST1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CST1 MUTATED        2      4      1      0
  CST1 WILD-TYPE    202    133     46      3
D109V1, multiclass
        clus
vv       CST1 MUTATED CST1 WILD-TYPE
  CLUS_1            2            202
  CLUS_2            4            133
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CST1 MUTATED        1      2      0      2      1
  CST1 WILD-TYPE     38     94     44     86     79
D109V2, multiclass
        clus
vv       CST1 MUTATED CST1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            2             94
  CLUS_3            0             44
  CLUS_4            2             86
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CST1 MUTATED        2      1      1      1      1
  CST1 WILD-TYPE     24     78     72     81     57
D109V3, multiclass
        clus
vv       CST1 MUTATED CST1 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            1             78
  CLUS_3            1             72
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CST1 MUTATED        2      2      0      2
  CST1 WILD-TYPE    125     49     71     67
D109V4, multiclass
        clus
vv       CST1 MUTATED CST1 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            2             49
  CLUS_3            0             71
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CST1 MUTATED        2      1      2      2      0
  CST1 WILD-TYPE     82     84     83     67     47
D109V5, multiclass
        clus
vv       CST1 MUTATED CST1 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            1             84
  CLUS_3            2             83
  CLUS_4            2             67
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CST1 MUTATED        3      1      3      0
  CST1 WILD-TYPE     92     73    118     80
D109V6, multiclass
        clus
vv       CST1 MUTATED CST1 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            3            118
  CLUS_4            0             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CST1 MUTATED        1      1      1      1      2      1
  CST1 WILD-TYPE     51     63     71    103     38     58
D109V7, multiclass
        clus
vv       CST1 MUTATED CST1 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            1             63
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            2             38
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CST1 MUTATED        4      1      2
  CST1 WILD-TYPE    213     74     97
D109V8, multiclass
        clus
vv       CST1 MUTATED CST1 WILD-TYPE
  CLUS_1            4            213
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CST1 MUTATED        2      1      2
  CST1 WILD-TYPE    119    107     70
D109V9, multiclass
        clus
vv       CST1 MUTATED CST1 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CST1 MUTATED        2      0      1      1      1
  CST1 WILD-TYPE     86     66     44     54     46
D109V10, multiclass
        clus
vv       CST1 MUTATED CST1 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(110) Variable = PTCHD3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCHD3 MUTATED        2     16      1      0
  PTCHD3 WILD-TYPE    202    121     46      3
D110V1, multiclass
        clus
vv       PTCHD3 MUTATED PTCHD3 WILD-TYPE
  CLUS_1              2              202
  CLUS_2             16              121
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTCHD3 MUTATED        2      9      1      0      1
  PTCHD3 WILD-TYPE     37     87     43     88     79
D110V2, multiclass
        clus
vv       PTCHD3 MUTATED PTCHD3 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              9               87
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTCHD3 MUTATED        1      6      5      0      3
  PTCHD3 WILD-TYPE     25     73     68     82     55
D110V3, multiclass
        clus
vv       PTCHD3 MUTATED PTCHD3 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              6               73
  CLUS_3              5               68
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCHD3 MUTATED        3      8      3      1
  PTCHD3 WILD-TYPE    124     43     68     68
D110V4, multiclass
        clus
vv       PTCHD3 MUTATED PTCHD3 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              8               43
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTCHD3 MUTATED        0      3      9      1      4
  PTCHD3 WILD-TYPE     84     82     76     68     43
D110V5, multiclass
        clus
vv       PTCHD3 MUTATED PTCHD3 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3              9               76
  CLUS_4              1               68
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCHD3 MUTATED        4      4      2      7
  PTCHD3 WILD-TYPE     91     70    119     73
D110V6, multiclass
        clus
vv       PTCHD3 MUTATED PTCHD3 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              4               70
  CLUS_3              2              119
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTCHD3 MUTATED        6      8      2      2      1      0
  PTCHD3 WILD-TYPE     46     56     70    102     39     59
D110V7, multiclass
        clus
vv       PTCHD3 MUTATED PTCHD3 WILD-TYPE
  CLUS_1              6               46
  CLUS_2              8               56
  CLUS_3              2               70
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTCHD3 MUTATED       15      2      2
  PTCHD3 WILD-TYPE    202     73     97
D110V8, multiclass
        clus
vv       PTCHD3 MUTATED PTCHD3 WILD-TYPE
  CLUS_1             15              202
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTCHD3 MUTATED        7      2      3
  PTCHD3 WILD-TYPE    114    106     69
D110V9, multiclass
        clus
vv       PTCHD3 MUTATED PTCHD3 WILD-TYPE
  CLUS_1              7              114
  CLUS_2              2              106
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTCHD3 MUTATED        3      2      2      0      5
  PTCHD3 WILD-TYPE     85     64     43     55     42
D110V10, multiclass
        clus
vv       PTCHD3 MUTATED PTCHD3 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              2               64
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(111) Variable = TBX4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBX4 MUTATED        2     12      0      0
  TBX4 WILD-TYPE    202    125     47      3
D111V1, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            2            202
  CLUS_2           12            125
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBX4 MUTATED        1      6      2      0      1
  TBX4 WILD-TYPE     38     90     42     88     79
D111V2, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            6             90
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBX4 MUTATED        1      5      3      1      1
  TBX4 WILD-TYPE     25     74     70     81     57
D111V3, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            5             74
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBX4 MUTATED        2      4      4      1
  TBX4 WILD-TYPE    125     47     67     68
D111V4, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            4             47
  CLUS_3            4             67
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBX4 MUTATED        0      1      6      2      3
  TBX4 WILD-TYPE     84     84     79     67     44
D111V5, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            6             79
  CLUS_4            2             67
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBX4 MUTATED        2      2      1      7
  TBX4 WILD-TYPE     93     72    120     73
D111V6, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            2             72
  CLUS_3            1            120
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TBX4 MUTATED        3      7      1      2      1      0
  TBX4 WILD-TYPE     49     57     71    102     39     59
D111V7, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            7             57
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TBX4 MUTATED       13      1      0
  TBX4 WILD-TYPE    204     74     99
D111V8, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1           13            204
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TBX4 MUTATED        4      1      3
  TBX4 WILD-TYPE    117    107     69
D111V9, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            1            107
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBX4 MUTATED        3      1      1      0      3
  TBX4 WILD-TYPE     85     65     44     55     44
D111V10, multiclass
        clus
vv       TBX4 MUTATED TBX4 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(112) Variable = ZMYM4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM4 MUTATED        2     14      3      0
  ZMYM4 WILD-TYPE    202    123     44      3
D112V1, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            14             123
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM4 MUTATED        2      7      3      0      1
  ZMYM4 WILD-TYPE     37     89     41     88     79
D112V2, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             7              89
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM4 MUTATED        2      6      5      1      4
  ZMYM4 WILD-TYPE     24     73     68     81     54
D112V3, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             6              73
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM4 MUTATED        5      9      3      1
  ZMYM4 WILD-TYPE    122     42     68     68
D112V4, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             9              42
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM4 MUTATED        2      4      9      1      2
  ZMYM4 WILD-TYPE     82     81     76     68     45
D112V5, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             4              81
  CLUS_3             9              76
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM4 MUTATED        3      3      3      9
  ZMYM4 WILD-TYPE     92     71    118     71
D112V6, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             3              71
  CLUS_3             3             118
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMYM4 MUTATED        4      6      3      3      1      2
  ZMYM4 WILD-TYPE     48     58     69    101     39     57
D112V7, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             6              58
  CLUS_3             3              69
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM4 MUTATED       16      1      2
  ZMYM4 WILD-TYPE    201     74     97
D112V8, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1            16             201
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM4 MUTATED        5      4      3
  ZMYM4 WILD-TYPE    116    104     69
D112V9, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             4             104
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM4 MUTATED        6      1      2      0      3
  ZMYM4 WILD-TYPE     82     65     43     55     44
D112V10, multiclass
        clus
vv       ZMYM4 MUTATED ZMYM4 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(113) Variable = SPTY2D1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTY2D1 MUTATED        4     14      1      0
  SPTY2D1 WILD-TYPE    200    123     46      3
D113V1, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               4               200
  CLUS_2              14               123
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTY2D1 MUTATED        0     10      2      3      1
  SPTY2D1 WILD-TYPE     39     86     42     85     79
D113V2, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               0                39
  CLUS_2              10                86
  CLUS_3               2                42
  CLUS_4               3                85
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTY2D1 MUTATED        3      5      6      0      3
  SPTY2D1 WILD-TYPE     23     74     67     82     55
D113V3, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               3                23
  CLUS_2               5                74
  CLUS_3               6                67
  CLUS_4               0                82
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTY2D1 MUTATED        5      9      2      1
  SPTY2D1 WILD-TYPE    122     42     69     68
D113V4, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               5               122
  CLUS_2               9                42
  CLUS_3               2                69
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTY2D1 MUTATED        3      3      8      1      2
  SPTY2D1 WILD-TYPE     81     82     77     68     45
D113V5, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               3                81
  CLUS_2               3                82
  CLUS_3               8                77
  CLUS_4               1                68
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPTY2D1 MUTATED        3      1      4      9
  SPTY2D1 WILD-TYPE     92     73    117     71
D113V6, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               1                73
  CLUS_3               4               117
  CLUS_4               9                71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPTY2D1 MUTATED        3      5      4      3      2      2
  SPTY2D1 WILD-TYPE     49     59     68    101     38     57
D113V7, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               5                59
  CLUS_3               4                68
  CLUS_4               3               101
  CLUS_5               2                38
  CLUS_6               2                57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPTY2D1 MUTATED       12      1      6
  SPTY2D1 WILD-TYPE    205     74     93
D113V8, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1              12               205
  CLUS_2               1                74
  CLUS_3               6                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPTY2D1 MUTATED        7      3      5
  SPTY2D1 WILD-TYPE    114    105     67
D113V9, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               7               114
  CLUS_2               3               105
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPTY2D1 MUTATED        4      1      3      1      6
  SPTY2D1 WILD-TYPE     84     65     42     54     41
D113V10, multiclass
        clus
vv       SPTY2D1 MUTATED SPTY2D1 WILD-TYPE
  CLUS_1               4                84
  CLUS_2               1                65
  CLUS_3               3                42
  CLUS_4               1                54
  CLUS_5               6                41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(114) Variable = SLC12A9 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A9 MUTATED        1     16      3      0
  SLC12A9 WILD-TYPE    203    121     44      3
D114V1, multiclass
        clus
vv       SLC12A9 MUTATED SLC12A9 WILD-TYPE
  CLUS_1               1               203
  CLUS_2              16               121
  CLUS_3               3                44
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A9 MUTATED        1      9      2      1      1
  SLC12A9 WILD-TYPE     38     87     42     87     79
D114V2, multiclass
        clus
vv       SLC12A9 MUTATED SLC12A9 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               9                87
  CLUS_3               2                42
  CLUS_4               1                87
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A9 MUTATED        2      3      8      2      5
  SLC12A9 WILD-TYPE     24     76     65     80     53
D114V3, multiclass
        clus
vv       SLC12A9 MUTATED SLC12A9 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               3                76
  CLUS_3               8                65
  CLUS_4               2                80
  CLUS_5               5                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A9 MUTATED        7      7      2      4
  SLC12A9 WILD-TYPE    120     44     69     65
D114V4, multiclass
        clus
vv       SLC12A9 MUTATED SLC12A9 WILD-TYPE
  CLUS_1               7               120
  CLUS_2               7                44
  CLUS_3               2                69
  CLUS_4               4                65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A9 MUTATED        2      5      4      4      3
  SLC12A9 WILD-TYPE     82     80     81     65     44
D114V5, multiclass
        clus
vv       SLC12A9 MUTATED SLC12A9 WILD-TYPE
  CLUS_1               2                82
  CLUS_2               5                80
  CLUS_3               4                81
  CLUS_4               4                65
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A9 MUTATED        6      4      2      6
  SLC12A9 WILD-TYPE     89     70    119     74
D114V6, multiclass
        clus
vv       SLC12A9 MUTATED SLC12A9 WILD-TYPE
  CLUS_1               6                89
  CLUS_2               4                70
  CLUS_3               2               119
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC12A9 MUTATED        4      5      2      5      3      1
  SLC12A9 WILD-TYPE     48     59     70     99     37     58
D114V7, multiclass
        clus
vv       SLC12A9 MUTATED SLC12A9 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               5                59
  CLUS_3               2                70
  CLUS_4               5                99
  CLUS_5               3                37
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A9 MUTATED       14      3      3
  SLC12A9 WILD-TYPE    203     72     96
D114V8, multiclass
        clus
vv       SLC12A9 MUTATED SLC12A9 WILD-TYPE
  CLUS_1              14               203
  CLUS_2               3                72
  CLUS_3               3                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A9 MUTATED        6      3      4
  SLC12A9 WILD-TYPE    115    105     68
D114V9, multiclass
        clus
vv       SLC12A9 MUTATED SLC12A9 WILD-TYPE
  CLUS_1               6               115
  CLUS_2               3               105
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A9 MUTATED        3      2      1      1      6
  SLC12A9 WILD-TYPE     85     64     44     54     41
D114V10, multiclass
        clus
vv       SLC12A9 MUTATED SLC12A9 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               2                64
  CLUS_3               1                44
  CLUS_4               1                54
  CLUS_5               6                41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(115) Variable = ALPK2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPK2 MUTATED        0     22      2      0
  ALPK2 WILD-TYPE    204    115     45      3
D115V1, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            22             115
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALPK2 MUTATED        2     13      1      0      2
  ALPK2 WILD-TYPE     37     83     43     88     78
D115V2, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            13              83
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALPK2 MUTATED        2      8      4      2      3
  ALPK2 WILD-TYPE     24     71     69     80     55
D115V3, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             8              71
  CLUS_3             4              69
  CLUS_4             2              80
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPK2 MUTATED        3     10      5      1
  ALPK2 WILD-TYPE    124     41     66     68
D115V4, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             3             124
  CLUS_2            10              41
  CLUS_3             5              66
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALPK2 MUTATED        1      3     12      3      4
  ALPK2 WILD-TYPE     83     82     73     66     43
D115V5, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3            12              73
  CLUS_4             3              66
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPK2 MUTATED        7      3      1     12
  ALPK2 WILD-TYPE     88     71    120     68
D115V6, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             3              71
  CLUS_3             1             120
  CLUS_4            12              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ALPK2 MUTATED        8      6      5      3      1      1
  ALPK2 WILD-TYPE     44     58     67    101     39     58
D115V7, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             8              44
  CLUS_2             6              58
  CLUS_3             5              67
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALPK2 MUTATED       21      2      1
  ALPK2 WILD-TYPE    196     73     98
D115V8, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1            21             196
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALPK2 MUTATED        8      3      6
  ALPK2 WILD-TYPE    113    105     66
D115V9, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             8             113
  CLUS_2             3             105
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALPK2 MUTATED        5      1      3      0      8
  ALPK2 WILD-TYPE     83     65     42     55     39
D115V10, multiclass
        clus
vv       ALPK2 MUTATED ALPK2 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             8              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(116) Variable = CABP5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CABP5 MUTATED        1      4      0      0
  CABP5 WILD-TYPE    203    133     47      3
D116V1, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             4             133
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CABP5 MUTATED        0      5      0      0      0
  CABP5 WILD-TYPE     39     91     44     88     80
D116V2, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CABP5 MUTATED        0      1      3      0      0
  CABP5 WILD-TYPE     26     78     70     82     58
D116V3, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CABP5 MUTATED        0      4      0      0
  CABP5 WILD-TYPE    127     47     71     69
D116V4, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             4              47
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CABP5 MUTATED        0      1      4      0      1
  CABP5 WILD-TYPE     84     84     81     69     46
D116V5, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             4              81
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CABP5 MUTATED        2      1      0      3
  CABP5 WILD-TYPE     93     73    121     77
D116V6, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CABP5 MUTATED        2      2      0      1      1      0
  CABP5 WILD-TYPE     50     62     72    103     39     59
D116V7, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             0              72
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CABP5 MUTATED        5      1      0
  CABP5 WILD-TYPE    212     74     99
D116V8, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CABP5 MUTATED        3      1      1
  CABP5 WILD-TYPE    118    107     71
D116V9, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CABP5 MUTATED        1      1      1      0      2
  CABP5 WILD-TYPE     87     65     44     55     45
D116V10, multiclass
        clus
vv       CABP5 MUTATED CABP5 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(117) Variable = MED15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED15 MUTATED        2     15      1      0
  MED15 WILD-TYPE    202    122     46      3
D117V1, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            15             122
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED15 MUTATED        2      7      5      1      2
  MED15 WILD-TYPE     37     89     39     87     78
D117V2, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             7              89
  CLUS_3             5              39
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED15 MUTATED        2      6      4      2      1
  MED15 WILD-TYPE     24     73     69     80     57
D117V3, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             6              73
  CLUS_3             4              69
  CLUS_4             2              80
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED15 MUTATED        3      4      6      2
  MED15 WILD-TYPE    124     47     65     67
D117V4, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             4              47
  CLUS_3             6              65
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED15 MUTATED        1      3      9      3      1
  MED15 WILD-TYPE     83     82     76     66     46
D117V5, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             9              76
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED15 MUTATED        5      5      1      6
  MED15 WILD-TYPE     90     69    120     74
D117V6, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             5              69
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MED15 MUTATED        3      4      4      4      3      0
  MED15 WILD-TYPE     49     60     68    100     37     59
D117V7, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             4              60
  CLUS_3             4              68
  CLUS_4             4             100
  CLUS_5             3              37
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED       12      5      1
  MED15 WILD-TYPE    205     70     98
D117V8, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             5              70
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED15 MUTATED        4      3      7
  MED15 WILD-TYPE    117    105     65
D117V9, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             3             105
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED15 MUTATED        5      4      2      0      3
  MED15 WILD-TYPE     83     62     43     55     44
D117V10, multiclass
        clus
vv       MED15 MUTATED MED15 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             4              62
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(118) Variable = GYLTL1B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GYLTL1B MUTATED        0     15      1      0
  GYLTL1B WILD-TYPE    204    122     46      3
D118V1, multiclass
        clus
vv       GYLTL1B MUTATED GYLTL1B WILD-TYPE
  CLUS_1               0               204
  CLUS_2              15               122
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GYLTL1B MUTATED        0     10      2      0      3
  GYLTL1B WILD-TYPE     39     86     42     88     77
D118V2, multiclass
        clus
vv       GYLTL1B MUTATED GYLTL1B WILD-TYPE
  CLUS_1               0                39
  CLUS_2              10                86
  CLUS_3               2                42
  CLUS_4               0                88
  CLUS_5               3                77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GYLTL1B MUTATED        1      3      4      1      2
  GYLTL1B WILD-TYPE     25     76     69     81     56
D118V3, multiclass
        clus
vv       GYLTL1B MUTATED GYLTL1B WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                76
  CLUS_3               4                69
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GYLTL1B MUTATED        3      6      2      0
  GYLTL1B WILD-TYPE    124     45     69     69
D118V4, multiclass
        clus
vv       GYLTL1B MUTATED GYLTL1B WILD-TYPE
  CLUS_1               3               124
  CLUS_2               6                45
  CLUS_3               2                69
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GYLTL1B MUTATED        0      3      9      3      1
  GYLTL1B WILD-TYPE     84     82     76     66     46
D118V5, multiclass
        clus
vv       GYLTL1B MUTATED GYLTL1B WILD-TYPE
  CLUS_1               0                84
  CLUS_2               3                82
  CLUS_3               9                76
  CLUS_4               3                66
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GYLTL1B MUTATED        5      1      2      8
  GYLTL1B WILD-TYPE     90     73    119     72
D118V6, multiclass
        clus
vv       GYLTL1B MUTATED GYLTL1B WILD-TYPE
  CLUS_1               5                90
  CLUS_2               1                73
  CLUS_3               2               119
  CLUS_4               8                72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GYLTL1B MUTATED        6      7      1      2      1      0
  GYLTL1B WILD-TYPE     46     57     71    102     39     59
D118V7, multiclass
        clus
vv       GYLTL1B MUTATED GYLTL1B WILD-TYPE
  CLUS_1               6                46
  CLUS_2               7                57
  CLUS_3               1                71
  CLUS_4               2               102
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GYLTL1B MUTATED       12      2      3
  GYLTL1B WILD-TYPE    205     73     96
D118V8, multiclass
        clus
vv       GYLTL1B MUTATED GYLTL1B WILD-TYPE
  CLUS_1              12               205
  CLUS_2               2                73
  CLUS_3               3                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GYLTL1B MUTATED        5      3      4
  GYLTL1B WILD-TYPE    116    105     68
D118V9, multiclass
        clus
vv       GYLTL1B MUTATED GYLTL1B WILD-TYPE
  CLUS_1               5               116
  CLUS_2               3               105
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GYLTL1B MUTATED        3      1      4      0      4
  GYLTL1B WILD-TYPE     85     65     41     55     43
D118V10, multiclass
        clus
vv       GYLTL1B MUTATED GYLTL1B WILD-TYPE
  CLUS_1               3                85
  CLUS_2               1                65
  CLUS_3               4                41
  CLUS_4               0                55
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(119) Variable = IL2RG MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL2RG MUTATED        1      8      1      0
  IL2RG WILD-TYPE    203    129     46      3
D119V1, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             1             203
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL2RG MUTATED        2      4      1      1      0
  IL2RG WILD-TYPE     37     92     43     87     80
D119V2, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             2              37
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL2RG MUTATED        0      3      1      1      4
  IL2RG WILD-TYPE     26     76     72     81     54
D119V3, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL2RG MUTATED        3      4      1      1
  IL2RG WILD-TYPE    124     47     70     68
D119V4, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             3             124
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL2RG MUTATED        1      1      4      2      0
  IL2RG WILD-TYPE     83     84     81     67     47
D119V5, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             4              81
  CLUS_4             2              67
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL2RG MUTATED        3      1      1      3
  IL2RG WILD-TYPE     92     73    120     77
D119V6, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IL2RG MUTATED        3      3      1      2      0      1
  IL2RG WILD-TYPE     49     61     71    102     40     58
D119V7, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             3              49
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL2RG MUTATED        8      1      1
  IL2RG WILD-TYPE    209     74     98
D119V8, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             8             209
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL2RG MUTATED        4      0      3
  IL2RG WILD-TYPE    117    108     69
D119V9, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             4             117
  CLUS_2             0             108
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL2RG MUTATED        2      1      1      1      2
  IL2RG WILD-TYPE     86     65     44     54     45
D119V10, multiclass
        clus
vv       IL2RG MUTATED IL2RG WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(120) Variable = CCDC88A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC88A MUTATED        2     18      1      0
  CCDC88A WILD-TYPE    202    119     46      3
D120V1, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               2               202
  CLUS_2              18               119
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC88A MUTATED        2      9      4      0      1
  CCDC88A WILD-TYPE     37     87     40     88     79
D120V2, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               2                37
  CLUS_2               9                87
  CLUS_3               4                40
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC88A MUTATED        1      8      3      1      6
  CCDC88A WILD-TYPE     25     71     70     81     52
D120V3, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               1                25
  CLUS_2               8                71
  CLUS_3               3                70
  CLUS_4               1                81
  CLUS_5               6                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC88A MUTATED        3      8      6      2
  CCDC88A WILD-TYPE    124     43     65     67
D120V4, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               3               124
  CLUS_2               8                43
  CLUS_3               6                65
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC88A MUTATED        0      5     11      4      2
  CCDC88A WILD-TYPE     84     80     74     65     45
D120V5, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               0                84
  CLUS_2               5                80
  CLUS_3              11                74
  CLUS_4               4                65
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC88A MUTATED        4      6      2     10
  CCDC88A WILD-TYPE     91     68    119     70
D120V6, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               4                91
  CLUS_2               6                68
  CLUS_3               2               119
  CLUS_4              10                70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC88A MUTATED        6     14      1      1      0      0
  CCDC88A WILD-TYPE     46     50     71    103     40     59
D120V7, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               6                46
  CLUS_2              14                50
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC88A MUTATED       20      1      1
  CCDC88A WILD-TYPE    197     74     98
D120V8, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1              20               197
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC88A MUTATED        5      2      8
  CCDC88A WILD-TYPE    116    106     64
D120V9, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               5               116
  CLUS_2               2               106
  CLUS_3               8                64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC88A MUTATED        3      1      5      0      6
  CCDC88A WILD-TYPE     85     65     40     55     41
D120V10, multiclass
        clus
vv       CCDC88A MUTATED CCDC88A WILD-TYPE
  CLUS_1               3                85
  CLUS_2               1                65
  CLUS_3               5                40
  CLUS_4               0                55
  CLUS_5               6                41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(121) Variable = PIGB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGB MUTATED        0     10      0      0
  PIGB WILD-TYPE    204    127     47      3
D121V1, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            0            204
  CLUS_2           10            127
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGB MUTATED        0      4      2      0      1
  PIGB WILD-TYPE     39     92     42     88     79
D121V2, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGB MUTATED        1      4      2      0      1
  PIGB WILD-TYPE     25     75     71     82     57
D121V3, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             75
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGB MUTATED        2      5      1      0
  PIGB WILD-TYPE    125     46     70     69
D121V4, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            2            125
  CLUS_2            5             46
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGB MUTATED        0      2      6      1      1
  PIGB WILD-TYPE     84     83     79     68     46
D121V5, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            6             79
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGB MUTATED        2      3      2      3
  PIGB WILD-TYPE     93     71    119     77
D121V6, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            2             93
  CLUS_2            3             71
  CLUS_3            2            119
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIGB MUTATED        2      5      2      1      0      0
  PIGB WILD-TYPE     50     59     70    103     40     59
D121V7, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            2             50
  CLUS_2            5             59
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGB MUTATED        9      1      0
  PIGB WILD-TYPE    208     74     99
D121V8, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            9            208
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGB MUTATED        3      1      2
  PIGB WILD-TYPE    118    107     70
D121V9, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            3            118
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGB MUTATED        2      1      2      0      1
  PIGB WILD-TYPE     86     65     43     55     46
D121V10, multiclass
        clus
vv       PIGB MUTATED PIGB WILD-TYPE
  CLUS_1            2             86
  CLUS_2            1             65
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(122) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       14     42      9      0
  PIK3CA WILD-TYPE    190     95     38      3
D122V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             14              190
  CLUS_2             42               95
  CLUS_3              9               38
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        5     20     28      3      3
  PIK3CA WILD-TYPE     34     76     16     85     77
D122V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              5               34
  CLUS_2             20               76
  CLUS_3             28               16
  CLUS_4              3               85
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        3     20     18      3     14
  PIK3CA WILD-TYPE     23     59     55     79     44
D122V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              3               23
  CLUS_2             20               59
  CLUS_3             18               55
  CLUS_4              3               79
  CLUS_5             14               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       20     19     16      3
  PIK3CA WILD-TYPE    107     32     55     66
D122V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             20              107
  CLUS_2             19               32
  CLUS_3             16               55
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED        4     15     28      7      8
  PIK3CA WILD-TYPE     80     70     57     62     39
D122V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              4               80
  CLUS_2             15               70
  CLUS_3             28               57
  CLUS_4              7               62
  CLUS_5              8               39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       12      9     22     19
  PIK3CA WILD-TYPE     83     65     99     61
D122V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             12               83
  CLUS_2              9               65
  CLUS_3             22               99
  CLUS_4             19               61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3CA MUTATED        9     18     17     17      3      1
  PIK3CA WILD-TYPE     43     46     55     87     37     58
D122V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              9               43
  CLUS_2             18               46
  CLUS_3             17               55
  CLUS_4             17               87
  CLUS_5              3               37
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       48     12      5
  PIK3CA WILD-TYPE    169     63     94
D122V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             48              169
  CLUS_2             12               63
  CLUS_3              5               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       13     12     22
  PIK3CA WILD-TYPE    108     96     50
D122V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             13              108
  CLUS_2             12               96
  CLUS_3             22               50
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CA MUTATED       12      7     16      0     12
  PIK3CA WILD-TYPE     76     59     29     55     35
D122V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             12               76
  CLUS_2              7               59
  CLUS_3             16               29
  CLUS_4              0               55
  CLUS_5             12               35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(123) Variable = PPIG MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIG MUTATED        2     13      3      0
  PPIG WILD-TYPE    202    124     44      3
D123V1, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            2            202
  CLUS_2           13            124
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIG MUTATED        1     10      1      2      1
  PPIG WILD-TYPE     38     86     43     86     79
D123V2, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            1             38
  CLUS_2           10             86
  CLUS_3            1             43
  CLUS_4            2             86
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIG MUTATED        0      6      6      3      0
  PPIG WILD-TYPE     26     73     67     79     58
D123V3, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            0             26
  CLUS_2            6             73
  CLUS_3            6             67
  CLUS_4            3             79
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIG MUTATED        3      7      3      2
  PPIG WILD-TYPE    124     44     68     67
D123V4, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            3            124
  CLUS_2            7             44
  CLUS_3            3             68
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIG MUTATED        1      4      7      0      5
  PPIG WILD-TYPE     83     81     78     69     42
D123V5, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            1             83
  CLUS_2            4             81
  CLUS_3            7             78
  CLUS_4            0             69
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIG MUTATED        1      3      3     10
  PPIG WILD-TYPE     94     71    118     70
D123V6, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            1             94
  CLUS_2            3             71
  CLUS_3            3            118
  CLUS_4           10             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPIG MUTATED        6      5      2      3      1      1
  PPIG WILD-TYPE     46     59     70    101     39     58
D123V7, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            6             46
  CLUS_2            5             59
  CLUS_3            2             70
  CLUS_4            3            101
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PPIG MUTATED       13      3      2
  PPIG WILD-TYPE    204     72     97
D123V8, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1           13            204
  CLUS_2            3             72
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PPIG MUTATED        8      2      4
  PPIG WILD-TYPE    113    106     68
D123V9, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            8            113
  CLUS_2            2            106
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIG MUTATED        3      1      3      1      6
  PPIG WILD-TYPE     85     65     42     54     41
D123V10, multiclass
        clus
vv       PPIG MUTATED PPIG WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            3             42
  CLUS_4            1             54
  CLUS_5            6             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(124) Variable = ATP6V1B1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1B1 MUTATED        2     18      1      0
  ATP6V1B1 WILD-TYPE    202    119     46      3
D124V1, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                2                202
  CLUS_2               18                119
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1B1 MUTATED        1     11      3      0      1
  ATP6V1B1 WILD-TYPE     38     85     41     88     79
D124V2, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2               11                 85
  CLUS_3                3                 41
  CLUS_4                0                 88
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1B1 MUTATED        3      6      2      1      5
  ATP6V1B1 WILD-TYPE     23     73     71     81     53
D124V3, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                3                 23
  CLUS_2                6                 73
  CLUS_3                2                 71
  CLUS_4                1                 81
  CLUS_5                5                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1B1 MUTATED        4      7      4      2
  ATP6V1B1 WILD-TYPE    123     44     67     67
D124V4, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                4                123
  CLUS_2                7                 44
  CLUS_3                4                 67
  CLUS_4                2                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1B1 MUTATED        0      4     10      4      1
  ATP6V1B1 WILD-TYPE     84     81     75     65     46
D124V5, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                4                 81
  CLUS_3               10                 75
  CLUS_4                4                 65
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1B1 MUTATED        5      5      1      8
  ATP6V1B1 WILD-TYPE     90     69    120     72
D124V6, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                5                 90
  CLUS_2                5                 69
  CLUS_3                1                120
  CLUS_4                8                 72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP6V1B1 MUTATED        3     10      5      1      2      0
  ATP6V1B1 WILD-TYPE     49     54     67    103     38     59
D124V7, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                3                 49
  CLUS_2               10                 54
  CLUS_3                5                 67
  CLUS_4                1                103
  CLUS_5                2                 38
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V1B1 MUTATED       17      2      2
  ATP6V1B1 WILD-TYPE    200     73     97
D124V8, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1               17                200
  CLUS_2                2                 73
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V1B1 MUTATED        6      1      8
  ATP6V1B1 WILD-TYPE    115    107     64
D124V9, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                6                115
  CLUS_2                1                107
  CLUS_3                8                 64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1B1 MUTATED        5      1      4      0      5
  ATP6V1B1 WILD-TYPE     83     65     41     55     42
D124V10, multiclass
        clus
vv       ATP6V1B1 MUTATED ATP6V1B1 WILD-TYPE
  CLUS_1                5                 83
  CLUS_2                1                 65
  CLUS_3                4                 41
  CLUS_4                0                 55
  CLUS_5                5                 42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(125) Variable = PLEKHA6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA6 MUTATED        4     17      1      0
  PLEKHA6 WILD-TYPE    200    120     46      3
D125V1, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               4               200
  CLUS_2              17               120
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHA6 MUTATED        0     13      2      2      2
  PLEKHA6 WILD-TYPE     39     83     42     86     78
D125V2, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               0                39
  CLUS_2              13                83
  CLUS_3               2                42
  CLUS_4               2                86
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHA6 MUTATED        1      7      5      3      5
  PLEKHA6 WILD-TYPE     25     72     68     79     53
D125V3, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               7                72
  CLUS_3               5                68
  CLUS_4               3                79
  CLUS_5               5                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA6 MUTATED        6      8      3      4
  PLEKHA6 WILD-TYPE    121     43     68     65
D125V4, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               6               121
  CLUS_2               8                43
  CLUS_3               3                68
  CLUS_4               4                65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHA6 MUTATED        1      6      7      3      4
  PLEKHA6 WILD-TYPE     83     79     78     66     43
D125V5, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               6                79
  CLUS_3               7                78
  CLUS_4               3                66
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA6 MUTATED        4      5      2     10
  PLEKHA6 WILD-TYPE     91     69    119     70
D125V6, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               5                69
  CLUS_3               2               119
  CLUS_4              10                70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLEKHA6 MUTATED        6      9      2      4      2      0
  PLEKHA6 WILD-TYPE     46     55     70    100     38     59
D125V7, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               6                46
  CLUS_2               9                55
  CLUS_3               2                70
  CLUS_4               4               100
  CLUS_5               2                38
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA6 MUTATED       19      1      3
  PLEKHA6 WILD-TYPE    198     74     96
D125V8, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1              19               198
  CLUS_2               1                74
  CLUS_3               3                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA6 MUTATED        8      5      5
  PLEKHA6 WILD-TYPE    113    103     67
D125V9, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               8               113
  CLUS_2               5               103
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHA6 MUTATED        4      2      4      1      7
  PLEKHA6 WILD-TYPE     84     64     41     54     40
D125V10, multiclass
        clus
vv       PLEKHA6 MUTATED PLEKHA6 WILD-TYPE
  CLUS_1               4                84
  CLUS_2               2                64
  CLUS_3               4                41
  CLUS_4               1                54
  CLUS_5               7                40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(126) Variable = PLA2G1B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G1B MUTATED        4      2      0      0
  PLA2G1B WILD-TYPE    200    135     47      3
D126V1, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               4               200
  CLUS_2               2               135
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLA2G1B MUTATED        1      1      2      1      1
  PLA2G1B WILD-TYPE     38     95     42     87     79
D126V2, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               1                38
  CLUS_2               1                95
  CLUS_3               2                42
  CLUS_4               1                87
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLA2G1B MUTATED        0      1      0      2      2
  PLA2G1B WILD-TYPE     26     78     73     80     56
D126V3, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                78
  CLUS_3               0                73
  CLUS_4               2                80
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G1B MUTATED        3      0      1      1
  PLA2G1B WILD-TYPE    124     51     70     68
D126V4, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               3               124
  CLUS_2               0                51
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLA2G1B MUTATED        2      2      1      1      0
  PLA2G1B WILD-TYPE     82     83     84     68     47
D126V5, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               2                82
  CLUS_2               2                83
  CLUS_3               1                84
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G1B MUTATED        1      1      4      0
  PLA2G1B WILD-TYPE     94     73    117     80
D126V6, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               4               117
  CLUS_4               0                80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLA2G1B MUTATED        0      0      3      2      0      1
  PLA2G1B WILD-TYPE     52     64     69    102     40     58
D126V7, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               0                52
  CLUS_2               0                64
  CLUS_3               3                69
  CLUS_4               2               102
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G1B MUTATED        3      1      2
  PLA2G1B WILD-TYPE    214     74     97
D126V8, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               3               214
  CLUS_2               1                74
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G1B MUTATED        2      3      0
  PLA2G1B WILD-TYPE    119    105     72
D126V9, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               2               119
  CLUS_2               3               105
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLA2G1B MUTATED        2      1      0      2      0
  PLA2G1B WILD-TYPE     86     65     45     53     47
D126V10, multiclass
        clus
vv       PLA2G1B MUTATED PLA2G1B WILD-TYPE
  CLUS_1               2                86
  CLUS_2               1                65
  CLUS_3               0                45
  CLUS_4               2                53
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(127) Variable = RTKN2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTKN2 MUTATED        0     11      0      0
  RTKN2 WILD-TYPE    204    126     47      3
D127V1, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            11             126
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTKN2 MUTATED        0      5      1      0      3
  RTKN2 WILD-TYPE     39     91     43     88     77
D127V2, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTKN2 MUTATED        1      1      5      1      1
  RTKN2 WILD-TYPE     25     78     68     81     57
D127V3, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTKN2 MUTATED        2      4      1      2
  RTKN2 WILD-TYPE    125     47     70     67
D127V4, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTKN2 MUTATED        0      3      7      1      0
  RTKN2 WILD-TYPE     84     82     78     68     47
D127V5, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             7              78
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTKN2 MUTATED        3      3      1      4
  RTKN2 WILD-TYPE     92     71    120     76
D127V6, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             3              71
  CLUS_3             1             120
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RTKN2 MUTATED        1      5      2      2      1      0
  RTKN2 WILD-TYPE     51     59     70    102     39     59
D127V7, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             5              59
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RTKN2 MUTATED        8      0      3
  RTKN2 WILD-TYPE    209     75     96
D127V8, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             0              75
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RTKN2 MUTATED        5      1      2
  RTKN2 WILD-TYPE    116    107     70
D127V9, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTKN2 MUTATED        3      1      2      0      2
  RTKN2 WILD-TYPE     85     65     43     55     45
D127V10, multiclass
        clus
vv       RTKN2 MUTATED RTKN2 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(128) Variable = PAX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX2 MUTATED        1     10      1      0
  PAX2 WILD-TYPE    203    127     46      3
D128V1, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            1            203
  CLUS_2           10            127
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAX2 MUTATED        1      6      3      0      1
  PAX2 WILD-TYPE     38     90     41     88     79
D128V2, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            6             90
  CLUS_3            3             41
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAX2 MUTATED        0      4      7      0      1
  PAX2 WILD-TYPE     26     75     66     82     57
D128V3, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            7             66
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX2 MUTATED        2      7      3      0
  PAX2 WILD-TYPE    125     44     68     69
D128V4, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            7             44
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAX2 MUTATED        0      3      7      1      0
  PAX2 WILD-TYPE     84     82     78     68     47
D128V5, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            7             78
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAX2 MUTATED        2      3      1      5
  PAX2 WILD-TYPE     93     71    120     75
D128V6, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            3             71
  CLUS_3            1            120
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAX2 MUTATED        1      5      3      3      0      0
  PAX2 WILD-TYPE     51     59     69    101     40     59
D128V7, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            5             59
  CLUS_3            3             69
  CLUS_4            3            101
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX2 MUTATED        9      3      0
  PAX2 WILD-TYPE    208     72     99
D128V8, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            9            208
  CLUS_2            3             72
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PAX2 MUTATED        2      2      4
  PAX2 WILD-TYPE    119    106     68
D128V9, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            2            106
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAX2 MUTATED        2      2      4      0      0
  PAX2 WILD-TYPE     86     64     41     55     47
D128V10, multiclass
        clus
vv       PAX2 MUTATED PAX2 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            2             64
  CLUS_3            4             41
  CLUS_4            0             55
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(129) Variable = SERPINI1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINI1 MUTATED        1      8      0      0
  SERPINI1 WILD-TYPE    203    129     47      3
D129V1, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                8                129
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINI1 MUTATED        0      4      2      0      0
  SERPINI1 WILD-TYPE     39     92     42     88     80
D129V2, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                4                 92
  CLUS_3                2                 42
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINI1 MUTATED        1      4      2      0      2
  SERPINI1 WILD-TYPE     25     75     71     82     56
D129V3, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                4                 75
  CLUS_3                2                 71
  CLUS_4                0                 82
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINI1 MUTATED        2      6      1      0
  SERPINI1 WILD-TYPE    125     45     70     69
D129V4, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                6                 45
  CLUS_3                1                 70
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINI1 MUTATED        1      0      5      1      1
  SERPINI1 WILD-TYPE     83     85     80     68     46
D129V5, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                0                 85
  CLUS_3                5                 80
  CLUS_4                1                 68
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINI1 MUTATED        4      1      1      2
  SERPINI1 WILD-TYPE     91     73    120     78
D129V6, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                4                 91
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                2                 78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERPINI1 MUTATED        0      3      4      1      0      1
  SERPINI1 WILD-TYPE     52     61     68    103     40     58
D129V7, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                0                 52
  CLUS_2                3                 61
  CLUS_3                4                 68
  CLUS_4                1                103
  CLUS_5                0                 40
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINI1 MUTATED        7      0      2
  SERPINI1 WILD-TYPE    210     75     97
D129V8, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                7                210
  CLUS_2                0                 75
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINI1 MUTATED        2      0      3
  SERPINI1 WILD-TYPE    119    108     69
D129V9, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                2                119
  CLUS_2                0                108
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINI1 MUTATED        1      0      1      0      3
  SERPINI1 WILD-TYPE     87     66     44     55     44
D129V10, multiclass
        clus
vv       SERPINI1 MUTATED SERPINI1 WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                0                 66
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(130) Variable = TMEM41A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41A MUTATED        0      8      1      0
  TMEM41A WILD-TYPE    204    129     46      3
D130V1, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               0               204
  CLUS_2               8               129
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41A MUTATED        0      7      1      0      0
  TMEM41A WILD-TYPE     39     89     43     88     80
D130V2, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               0                39
  CLUS_2               7                89
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41A MUTATED        1      0      4      0      2
  TMEM41A WILD-TYPE     25     79     69     82     56
D130V3, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                79
  CLUS_3               4                69
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41A MUTATED        2      5      0      0
  TMEM41A WILD-TYPE    125     46     71     69
D130V4, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               2               125
  CLUS_2               5                46
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41A MUTATED        0      2      6      1      0
  TMEM41A WILD-TYPE     84     83     79     68     47
D130V5, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3               6                79
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41A MUTATED        2      1      0      6
  TMEM41A WILD-TYPE     93     73    121     74
D130V6, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM41A MUTATED        3      4      1      1      0      0
  TMEM41A WILD-TYPE     49     60     71    103     40     59
D130V7, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               3                49
  CLUS_2               4                60
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41A MUTATED        7      1      1
  TMEM41A WILD-TYPE    210     74     98
D130V8, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               7               210
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41A MUTATED        3      1      3
  TMEM41A WILD-TYPE    118    107     69
D130V9, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               3               118
  CLUS_2               1               107
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41A MUTATED        1      1      2      0      3
  TMEM41A WILD-TYPE     87     65     43     55     44
D130V10, multiclass
        clus
vv       TMEM41A MUTATED TMEM41A WILD-TYPE
  CLUS_1               1                87
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(131) Variable = ADAM30 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM30 MUTATED        3     12      1      0
  ADAM30 WILD-TYPE    201    125     46      3
D131V1, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             12              125
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM30 MUTATED        1      7      1      2      0
  ADAM30 WILD-TYPE     38     89     43     86     80
D131V2, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              7               89
  CLUS_3              1               43
  CLUS_4              2               86
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM30 MUTATED        0      6      6      2      2
  ADAM30 WILD-TYPE     26     73     67     80     56
D131V3, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              6               73
  CLUS_3              6               67
  CLUS_4              2               80
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM30 MUTATED        3      8      3      2
  ADAM30 WILD-TYPE    124     43     68     67
D131V4, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              8               43
  CLUS_3              3               68
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM30 MUTATED        1      2      7      2      3
  ADAM30 WILD-TYPE     83     83     78     67     44
D131V5, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              7               78
  CLUS_4              2               67
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM30 MUTATED        3      4      1      7
  ADAM30 WILD-TYPE     92     70    120     73
D131V6, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              4               70
  CLUS_3              1              120
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADAM30 MUTATED        5      6      1      2      1      1
  ADAM30 WILD-TYPE     47     58     71    102     39     58
D131V7, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              6               58
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM30 MUTATED       12      0      4
  ADAM30 WILD-TYPE    205     75     95
D131V8, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1             12              205
  CLUS_2              0               75
  CLUS_3              4               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADAM30 MUTATED        2      3      3
  ADAM30 WILD-TYPE    119    105     69
D131V9, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              3              105
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM30 MUTATED        2      0      1      2      3
  ADAM30 WILD-TYPE     86     66     44     53     44
D131V10, multiclass
        clus
vv       ADAM30 MUTATED ADAM30 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              2               53
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(132) Variable = B3GNT5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GNT5 MUTATED        2      8      1      0
  B3GNT5 WILD-TYPE    202    129     46      3
D132V1, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              8              129
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B3GNT5 MUTATED        2      4      1      0      2
  B3GNT5 WILD-TYPE     37     92     43     88     78
D132V2, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B3GNT5 MUTATED        1      3      4      1      1
  B3GNT5 WILD-TYPE     25     76     69     81     57
D132V3, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GNT5 MUTATED        3      4      2      1
  B3GNT5 WILD-TYPE    124     47     69     68
D132V4, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              4               47
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B3GNT5 MUTATED        0      2      7      1      1
  B3GNT5 WILD-TYPE     84     83     78     68     46
D132V5, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              7               78
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B3GNT5 MUTATED        2      1      2      6
  B3GNT5 WILD-TYPE     93     73    119     74
D132V6, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  B3GNT5 MUTATED        5      4      0      1      1      0
  B3GNT5 WILD-TYPE     47     60     72    103     39     59
D132V7, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              4               60
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  B3GNT5 MUTATED       10      1      0
  B3GNT5 WILD-TYPE    207     74     99
D132V8, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1             10              207
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  B3GNT5 MUTATED        5      1      2
  B3GNT5 WILD-TYPE    116    107     70
D132V9, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B3GNT5 MUTATED        2      0      2      0      4
  B3GNT5 WILD-TYPE     86     66     43     55     43
D132V10, multiclass
        clus
vv       B3GNT5 MUTATED B3GNT5 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(133) Variable = PAPD4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAPD4 MUTATED        2      6      3      0
  PAPD4 WILD-TYPE    202    131     44      3
D133V1, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             6             131
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAPD4 MUTATED        2      6      1      1      0
  PAPD4 WILD-TYPE     37     90     43     87     80
D133V2, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAPD4 MUTATED        1      3      4      0      2
  PAPD4 WILD-TYPE     25     76     69     82     56
D133V3, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAPD4 MUTATED        3      4      3      0
  PAPD4 WILD-TYPE    124     47     68     69
D133V4, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             4              47
  CLUS_3             3              68
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAPD4 MUTATED        1      2      3      4      1
  PAPD4 WILD-TYPE     83     83     82     65     46
D133V5, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             3              82
  CLUS_4             4              65
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAPD4 MUTATED        5      1      1      4
  PAPD4 WILD-TYPE     90     73    120     76
D133V6, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAPD4 MUTATED        3      2      1      3      1      1
  PAPD4 WILD-TYPE     49     62     71    101     39     58
D133V7, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAPD4 MUTATED        9      1      1
  PAPD4 WILD-TYPE    208     74     98
D133V8, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAPD4 MUTATED        5      2      2
  PAPD4 WILD-TYPE    116    106     70
D133V9, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAPD4 MUTATED        3      1      1      1      3
  PAPD4 WILD-TYPE     85     65     44     54     44
D133V10, multiclass
        clus
vv       PAPD4 MUTATED PAPD4 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(134) Variable = DTX3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DTX3 MUTATED        2      4      0      0
  DTX3 WILD-TYPE    202    133     47      3
D134V1, multiclass
        clus
vv       DTX3 MUTATED DTX3 WILD-TYPE
  CLUS_1            2            202
  CLUS_2            4            133
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DTX3 MUTATED        0      3      2      1      0
  DTX3 WILD-TYPE     39     93     42     87     80
D134V2, multiclass
        clus
vv       DTX3 MUTATED DTX3 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DTX3 MUTATED        0      4      1      0      0
  DTX3 WILD-TYPE     26     75     72     82     58
D134V3, multiclass
        clus
vv       DTX3 MUTATED DTX3 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DTX3 MUTATED        1      1      3      0
  DTX3 WILD-TYPE    126     50     68     69
D134V4, multiclass
        clus
vv       DTX3 MUTATED DTX3 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            1             50
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DTX3 MUTATED        2      0      3      0      1
  DTX3 WILD-TYPE     82     85     82     69     46
D134V5, multiclass
        clus
vv       DTX3 MUTATED DTX3 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            0             85
  CLUS_3            3             82
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DTX3 MUTATED        0      1      2      3
  DTX3 WILD-TYPE     95     73    119     77
D134V6, multiclass
        clus
vv       DTX3 MUTATED DTX3 WILD-TYPE
  CLUS_1            0             95
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DTX3 MUTATED        2      2      1      1      0      1
  DTX3 WILD-TYPE     50     62     71    103     40     58
D134V7, multiclass
        clus
vv       DTX3 MUTATED DTX3 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            2             62
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DTX3 MUTATED        4      1      2
  DTX3 WILD-TYPE    213     74     97
D134V8, multiclass
        clus
vv       DTX3 MUTATED DTX3 WILD-TYPE
  CLUS_1            4            213
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DTX3 MUTATED        5      0      1
  DTX3 WILD-TYPE    116    108     71
D134V9, multiclass
        clus
vv       DTX3 MUTATED DTX3 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            0            108
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DTX3 MUTATED        1      1      0      1      3
  DTX3 WILD-TYPE     87     65     45     54     44
D134V10, multiclass
        clus
vv       DTX3 MUTATED DTX3 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(135) Variable = BTBD11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD11 MUTATED        4     17      5      0
  BTBD11 WILD-TYPE    200    120     42      3
D135V1, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              4              200
  CLUS_2             17              120
  CLUS_3              5               42
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD11 MUTATED        2     13      4      0      1
  BTBD11 WILD-TYPE     37     83     40     88     79
D135V2, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              2               37
  CLUS_2             13               83
  CLUS_3              4               40
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD11 MUTATED        2      8      7      2      2
  BTBD11 WILD-TYPE     24     71     66     80     56
D135V3, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              8               71
  CLUS_3              7               66
  CLUS_4              2               80
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD11 MUTATED        6      7      5      3
  BTBD11 WILD-TYPE    121     44     66     66
D135V4, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              6              121
  CLUS_2              7               44
  CLUS_3              5               66
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD11 MUTATED        2      2     11      5      6
  BTBD11 WILD-TYPE     82     83     74     64     41
D135V5, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              2               83
  CLUS_3             11               74
  CLUS_4              5               64
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD11 MUTATED       11      2      4      9
  BTBD11 WILD-TYPE     84     72    117     71
D135V6, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1             11               84
  CLUS_2              2               72
  CLUS_3              4              117
  CLUS_4              9               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTBD11 MUTATED        6      7      7      1      5      0
  BTBD11 WILD-TYPE     46     57     65    103     35     59
D135V7, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1              6               46
  CLUS_2              7               57
  CLUS_3              7               65
  CLUS_4              1              103
  CLUS_5              5               35
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTBD11 MUTATED       24      0      2
  BTBD11 WILD-TYPE    193     75     97
D135V8, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1             24              193
  CLUS_2              0               75
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTBD11 MUTATED       10      3      7
  BTBD11 WILD-TYPE    111    105     65
D135V9, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1             10              111
  CLUS_2              3              105
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD11 MUTATED       10      0      5      0      5
  BTBD11 WILD-TYPE     78     66     40     55     42
D135V10, multiclass
        clus
vv       BTBD11 MUTATED BTBD11 WILD-TYPE
  CLUS_1             10               78
  CLUS_2              0               66
  CLUS_3              5               40
  CLUS_4              0               55
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(136) Variable = ART1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ART1 MUTATED        1      7      0      0
  ART1 WILD-TYPE    203    130     47      3
D136V1, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            7            130
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ART1 MUTATED        1      2      2      1      0
  ART1 WILD-TYPE     38     94     42     87     80
D136V2, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            2             94
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ART1 MUTATED        1      4      1      0      0
  ART1 WILD-TYPE     25     75     72     82     58
D136V3, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             75
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ART1 MUTATED        1      3      2      0
  ART1 WILD-TYPE    126     48     69     69
D136V4, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            3             48
  CLUS_3            2             69
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ART1 MUTATED        1      0      4      1      2
  ART1 WILD-TYPE     83     85     81     68     45
D136V5, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            0             85
  CLUS_3            4             81
  CLUS_4            1             68
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ART1 MUTATED        3      0      1      4
  ART1 WILD-TYPE     92     74    120     76
D136V6, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            0             74
  CLUS_3            1            120
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ART1 MUTATED        2      5      0      0      0      1
  ART1 WILD-TYPE     50     59     72    104     40     58
D136V7, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            5             59
  CLUS_3            0             72
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ART1 MUTATED        7      0      1
  ART1 WILD-TYPE    210     75     98
D136V8, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ART1 MUTATED        2      0      4
  ART1 WILD-TYPE    119    108     68
D136V9, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            0            108
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ART1 MUTATED        1      0      3      0      2
  ART1 WILD-TYPE     87     66     42     55     45
D136V10, multiclass
        clus
vv       ART1 MUTATED ART1 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(137) Variable = BRD8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD8 MUTATED       13     17      2      0
  BRD8 WILD-TYPE    191    120     45      3
D137V1, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1           13            191
  CLUS_2           17            120
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRD8 MUTATED        4     10      4      7      5
  BRD8 WILD-TYPE     35     86     40     81     75
D137V2, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            4             35
  CLUS_2           10             86
  CLUS_3            4             40
  CLUS_4            7             81
  CLUS_5            5             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRD8 MUTATED        1      6      5      3      7
  BRD8 WILD-TYPE     25     73     68     79     51
D137V3, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            6             73
  CLUS_3            5             68
  CLUS_4            3             79
  CLUS_5            7             51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD8 MUTATED        9      5      4      4
  BRD8 WILD-TYPE    118     46     67     65
D137V4, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            9            118
  CLUS_2            5             46
  CLUS_3            4             67
  CLUS_4            4             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRD8 MUTATED        8      9      6      6      1
  BRD8 WILD-TYPE     76     76     79     63     46
D137V5, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            8             76
  CLUS_2            9             76
  CLUS_3            6             79
  CLUS_4            6             63
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRD8 MUTATED        8      4     10      8
  BRD8 WILD-TYPE     87     70    111     72
D137V6, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            8             87
  CLUS_2            4             70
  CLUS_3           10            111
  CLUS_4            8             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRD8 MUTATED        3      5      8      8      1      7
  BRD8 WILD-TYPE     49     59     64     96     39     52
D137V7, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            5             59
  CLUS_3            8             64
  CLUS_4            8             96
  CLUS_5            1             39
  CLUS_6            7             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD8 MUTATED       17      4     11
  BRD8 WILD-TYPE    200     71     88
D137V8, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1           17            200
  CLUS_2            4             71
  CLUS_3           11             88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRD8 MUTATED       12      9      5
  BRD8 WILD-TYPE    109     99     67
D137V9, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1           12            109
  CLUS_2            9             99
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRD8 MUTATED        8      3      3      8      4
  BRD8 WILD-TYPE     80     63     42     47     43
D137V10, multiclass
        clus
vv       BRD8 MUTATED BRD8 WILD-TYPE
  CLUS_1            8             80
  CLUS_2            3             63
  CLUS_3            3             42
  CLUS_4            8             47
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(138) Variable = FOXN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXN3 MUTATED        0     11      2      0
  FOXN3 WILD-TYPE    204    126     45      3
D138V1, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            11             126
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXN3 MUTATED        0      8      2      0      1
  FOXN3 WILD-TYPE     39     88     42     88     79
D138V2, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             8              88
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXN3 MUTATED        1      6      2      0      2
  FOXN3 WILD-TYPE     25     73     71     82     56
D138V3, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             6              73
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXN3 MUTATED        1      7      2      1
  FOXN3 WILD-TYPE    126     44     69     68
D138V4, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             7              44
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXN3 MUTATED        0      4      5      0      2
  FOXN3 WILD-TYPE     84     81     80     69     45
D138V5, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             4              81
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXN3 MUTATED        2      3      1      5
  FOXN3 WILD-TYPE     93     71    120     75
D138V6, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             3              71
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXN3 MUTATED        1      6      3      1      2      0
  FOXN3 WILD-TYPE     51     58     69    103     38     59
D138V7, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             6              58
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXN3 MUTATED       11      0      2
  FOXN3 WILD-TYPE    206     75     97
D138V8, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXN3 MUTATED        3      2      6
  FOXN3 WILD-TYPE    118    106     66
D138V9, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXN3 MUTATED        4      0      4      0      3
  FOXN3 WILD-TYPE     84     66     41     55     44
D138V10, multiclass
        clus
vv       FOXN3 MUTATED FOXN3 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(139) Variable = SPG20 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPG20 MUTATED        4     16      2      0
  SPG20 WILD-TYPE    200    121     45      3
D139V1, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            16             121
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPG20 MUTATED        0      9      4      0      2
  SPG20 WILD-TYPE     39     87     40     88     78
D139V2, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             9              87
  CLUS_3             4              40
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPG20 MUTATED        1      9      2      3      4
  SPG20 WILD-TYPE     25     70     71     79     54
D139V3, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             9              70
  CLUS_3             2              71
  CLUS_4             3              79
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPG20 MUTATED        4      8      5      2
  SPG20 WILD-TYPE    123     43     66     67
D139V4, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             8              43
  CLUS_3             5              66
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPG20 MUTATED        1      4     12      1      3
  SPG20 WILD-TYPE     83     81     73     68     44
D139V5, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             4              81
  CLUS_3            12              73
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPG20 MUTATED        4      4      3     10
  SPG20 WILD-TYPE     91     70    118     70
D139V6, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             4              70
  CLUS_3             3             118
  CLUS_4            10              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPG20 MUTATED        4     10      4      3      0      1
  SPG20 WILD-TYPE     48     54     68    101     40     58
D139V7, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             4              48
  CLUS_2            10              54
  CLUS_3             4              68
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPG20 MUTATED       18      3      1
  SPG20 WILD-TYPE    199     72     98
D139V8, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1            18             199
  CLUS_2             3              72
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SPG20 MUTATED        6      2      4
  SPG20 WILD-TYPE    115    106     68
D139V9, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPG20 MUTATED        2      1      4      0      5
  SPG20 WILD-TYPE     86     65     41     55     42
D139V10, multiclass
        clus
vv       SPG20 MUTATED SPG20 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(140) Variable = WNK4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK4 MUTATED        3     20      1      0
  WNK4 WILD-TYPE    201    117     46      3
D140V1, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            3            201
  CLUS_2           20            117
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNK4 MUTATED        0     13      1      3      2
  WNK4 WILD-TYPE     39     83     43     85     78
D140V2, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            0             39
  CLUS_2           13             83
  CLUS_3            1             43
  CLUS_4            3             85
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNK4 MUTATED        3      5      6      0      6
  WNK4 WILD-TYPE     23     74     67     82     52
D140V3, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            3             23
  CLUS_2            5             74
  CLUS_3            6             67
  CLUS_4            0             82
  CLUS_5            6             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK4 MUTATED        7      8      4      1
  WNK4 WILD-TYPE    120     43     67     68
D140V4, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            7            120
  CLUS_2            8             43
  CLUS_3            4             67
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNK4 MUTATED        4      5      9      4      1
  WNK4 WILD-TYPE     80     80     76     65     46
D140V5, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            4             80
  CLUS_2            5             80
  CLUS_3            9             76
  CLUS_4            4             65
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNK4 MUTATED        6      3      5      9
  WNK4 WILD-TYPE     89     71    116     71
D140V6, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            6             89
  CLUS_2            3             71
  CLUS_3            5            116
  CLUS_4            9             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WNK4 MUTATED        5      8      4      2      1      4
  WNK4 WILD-TYPE     47     56     68    102     39     55
D140V7, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            5             47
  CLUS_2            8             56
  CLUS_3            4             68
  CLUS_4            2            102
  CLUS_5            1             39
  CLUS_6            4             55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK4 MUTATED       17      2      5
  WNK4 WILD-TYPE    200     73     94
D140V8, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1           17            200
  CLUS_2            2             73
  CLUS_3            5             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNK4 MUTATED       10      2      5
  WNK4 WILD-TYPE    111    106     67
D140V9, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1           10            111
  CLUS_2            2            106
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNK4 MUTATED        5      1      4      2      5
  WNK4 WILD-TYPE     83     65     41     53     42
D140V10, multiclass
        clus
vv       WNK4 MUTATED WNK4 WILD-TYPE
  CLUS_1            5             83
  CLUS_2            1             65
  CLUS_3            4             41
  CLUS_4            2             53
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(141) Variable = CBLL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLL1 MUTATED        2      5      1      0
  CBLL1 WILD-TYPE    202    132     46      3
D141V1, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             5             132
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLL1 MUTATED        0      4      1      1      0
  CBLL1 WILD-TYPE     39     92     43     87     80
D141V2, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLL1 MUTATED        0      0      3      2      2
  CBLL1 WILD-TYPE     26     79     70     80     56
D141V3, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              79
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLL1 MUTATED        2      2      0      3
  CBLL1 WILD-TYPE    125     49     71     66
D141V4, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             2              49
  CLUS_3             0              71
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLL1 MUTATED        1      3      1      0      3
  CBLL1 WILD-TYPE     83     82     84     69     44
D141V5, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             1              84
  CLUS_4             0              69
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLL1 MUTATED        2      2      2      2
  CBLL1 WILD-TYPE     93     72    119     78
D141V6, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CBLL1 MUTATED        1      1      1      3      2      0
  CBLL1 WILD-TYPE     51     63     71    101     38     59
D141V7, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             1              63
  CLUS_3             1              71
  CLUS_4             3             101
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLL1 MUTATED        3      3      2
  CBLL1 WILD-TYPE    214     72     97
D141V8, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             3             214
  CLUS_2             3              72
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLL1 MUTATED        1      2      2
  CBLL1 WILD-TYPE    120    106     70
D141V9, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLL1 MUTATED        3      0      0      1      1
  CBLL1 WILD-TYPE     85     66     45     54     46
D141V10, multiclass
        clus
vv       CBLL1 MUTATED CBLL1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             1              54
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(142) Variable = TTF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTF1 MUTATED        3     12      1      0
  TTF1 WILD-TYPE    201    125     46      3
D142V1, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            3            201
  CLUS_2           12            125
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTF1 MUTATED        1      7      2      1      0
  TTF1 WILD-TYPE     38     89     42     87     80
D142V2, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            7             89
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTF1 MUTATED        0      7      2      2      2
  TTF1 WILD-TYPE     26     72     71     80     56
D142V3, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            7             72
  CLUS_3            2             71
  CLUS_4            2             80
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTF1 MUTATED        2      6      3      2
  TTF1 WILD-TYPE    125     45     68     67
D142V4, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            6             45
  CLUS_3            3             68
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTF1 MUTATED        3      2      7      0      2
  TTF1 WILD-TYPE     81     83     78     69     45
D142V5, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            3             81
  CLUS_2            2             83
  CLUS_3            7             78
  CLUS_4            0             69
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TTF1 MUTATED        2      2      5      5
  TTF1 WILD-TYPE     93     72    116     75
D142V6, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            2             72
  CLUS_3            5            116
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TTF1 MUTATED        4      5      3      1      0      3
  TTF1 WILD-TYPE     48     59     69    103     40     56
D142V7, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            5             59
  CLUS_3            3             69
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            3             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TTF1 MUTATED       12      1      3
  TTF1 WILD-TYPE    205     74     96
D142V8, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1           12            205
  CLUS_2            1             74
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TTF1 MUTATED        5      2      3
  TTF1 WILD-TYPE    116    106     69
D142V9, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            2            106
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TTF1 MUTATED        3      1      1      1      4
  TTF1 WILD-TYPE     85     65     44     54     43
D142V10, multiclass
        clus
vv       TTF1 MUTATED TTF1 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(143) Variable = SCLT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLT1 MUTATED        3     13      1      0
  SCLT1 WILD-TYPE    201    124     46      3
D143V1, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            13             124
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCLT1 MUTATED        2      8      1      1      0
  SCLT1 WILD-TYPE     37     88     43     87     80
D143V2, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             8              88
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCLT1 MUTATED        0      5      3      2      5
  SCLT1 WILD-TYPE     26     74     70     80     53
D143V3, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             5              74
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLT1 MUTATED        3      7      2      3
  SCLT1 WILD-TYPE    124     44     69     66
D143V4, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             7              44
  CLUS_3             2              69
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCLT1 MUTATED        1      1      7      5      1
  SCLT1 WILD-TYPE     83     84     78     64     46
D143V5, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             7              78
  CLUS_4             5              64
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCLT1 MUTATED        6      3      1      5
  SCLT1 WILD-TYPE     89     71    120     75
D143V6, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             3              71
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCLT1 MUTATED        5      6      2      2      2      0
  SCLT1 WILD-TYPE     47     58     70    102     38     59
D143V7, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             6              58
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCLT1 MUTATED       13      3      1
  SCLT1 WILD-TYPE    204     72     98
D143V8, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1            13             204
  CLUS_2             3              72
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SCLT1 MUTATED        6      0      3
  SCLT1 WILD-TYPE    115    108     69
D143V9, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             0             108
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCLT1 MUTATED        2      1      1      0      5
  SCLT1 WILD-TYPE     86     65     44     55     42
D143V10, multiclass
        clus
vv       SCLT1 MUTATED SCLT1 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(144) Variable = PALB2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALB2 MUTATED        2      8      1      0
  PALB2 WILD-TYPE    202    129     46      3
D144V1, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PALB2 MUTATED        1      6      1      0      2
  PALB2 WILD-TYPE     38     90     43     88     78
D144V2, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PALB2 MUTATED        2      5      2      0      2
  PALB2 WILD-TYPE     24     74     71     82     56
D144V3, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             5              74
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALB2 MUTATED        2      6      3      0
  PALB2 WILD-TYPE    125     45     68     69
D144V4, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             6              45
  CLUS_3             3              68
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PALB2 MUTATED        2      1      6      0      2
  PALB2 WILD-TYPE     82     84     79     69     45
D144V5, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             1              84
  CLUS_3             6              79
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PALB2 MUTATED        1      1      3      6
  PALB2 WILD-TYPE     94     73    118     74
D144V6, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             3             118
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PALB2 MUTATED        2      4      1      2      1      1
  PALB2 WILD-TYPE     50     60     71    102     39     58
D144V7, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             4              60
  CLUS_3             1              71
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PALB2 MUTATED        8      2      1
  PALB2 WILD-TYPE    209     73     98
D144V8, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PALB2 MUTATED        4      2      4
  PALB2 WILD-TYPE    117    106     68
D144V9, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PALB2 MUTATED        2      1      4      0      3
  PALB2 WILD-TYPE     86     65     41     55     44
D144V10, multiclass
        clus
vv       PALB2 MUTATED PALB2 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(145) Variable = ABCC4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC4 MUTATED        3     14      2      0
  ABCC4 WILD-TYPE    201    123     45      3
D145V1, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            14             123
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC4 MUTATED        1      5      5      1      2
  ABCC4 WILD-TYPE     38     91     39     87     78
D145V2, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             5              39
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC4 MUTATED        2      5      4      1      6
  ABCC4 WILD-TYPE     24     74     69     81     52
D145V3, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             5              74
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC4 MUTATED        7      6      4      1
  ABCC4 WILD-TYPE    120     45     67     68
D145V4, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             7             120
  CLUS_2             6              45
  CLUS_3             4              67
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC4 MUTATED        1      2      8      3      4
  ABCC4 WILD-TYPE     83     83     77     66     43
D145V5, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             8              77
  CLUS_4             3              66
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC4 MUTATED        4      2      3      9
  ABCC4 WILD-TYPE     91     72    118     71
D145V6, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             3             118
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCC4 MUTATED        5      8      1      3      1      1
  ABCC4 WILD-TYPE     47     56     71    101     39     58
D145V7, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             8              56
  CLUS_3             1              71
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC4 MUTATED       14      2      3
  ABCC4 WILD-TYPE    203     73     96
D145V8, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             2              73
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC4 MUTATED        4      1      7
  ABCC4 WILD-TYPE    117    107     65
D145V9, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC4 MUTATED        3      1      5      1      2
  ABCC4 WILD-TYPE     85     65     40     54     45
D145V10, multiclass
        clus
vv       ABCC4 MUTATED ABCC4 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             5              40
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(146) Variable = EAF2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EAF2 MUTATED        0      8      1      0
  EAF2 WILD-TYPE    204    129     46      3
D146V1, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            8            129
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EAF2 MUTATED        0      6      0      0      0
  EAF2 WILD-TYPE     39     90     44     88     80
D146V2, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            6             90
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EAF2 MUTATED        1      1      1      2      2
  EAF2 WILD-TYPE     25     78     72     80     56
D146V3, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             78
  CLUS_3            1             72
  CLUS_4            2             80
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EAF2 MUTATED        2      2      1      2
  EAF2 WILD-TYPE    125     49     70     67
D146V4, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            2             49
  CLUS_3            1             70
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EAF2 MUTATED        1      1      4      1      2
  EAF2 WILD-TYPE     83     84     81     68     45
D146V5, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            1             84
  CLUS_3            4             81
  CLUS_4            1             68
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EAF2 MUTATED        4      2      0      3
  EAF2 WILD-TYPE     91     72    121     77
D146V6, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EAF2 MUTATED        2      3      1      1      1      1
  EAF2 WILD-TYPE     50     61     71    103     39     58
D146V7, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            3             61
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EAF2 MUTATED        7      1      1
  EAF2 WILD-TYPE    210     74     98
D146V8, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EAF2 MUTATED        1      1      3
  EAF2 WILD-TYPE    120    107     69
D146V9, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            1            120
  CLUS_2            1            107
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EAF2 MUTATED        2      0      1      0      2
  EAF2 WILD-TYPE     86     66     44     55     45
D146V10, multiclass
        clus
vv       EAF2 MUTATED EAF2 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(147) Variable = FAAH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAAH MUTATED        1      3      1      0
  FAAH WILD-TYPE    203    134     46      3
D147V1, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            1            203
  CLUS_2            3            134
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAAH MUTATED        1      1      1      1      0
  FAAH WILD-TYPE     38     95     43     87     80
D147V2, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            1             38
  CLUS_2            1             95
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAAH MUTATED        0      1      1      2      1
  FAAH WILD-TYPE     26     78     72     80     57
D147V3, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            1             72
  CLUS_4            2             80
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAAH MUTATED        1      1      1      2
  FAAH WILD-TYPE    126     50     70     67
D147V4, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            1            126
  CLUS_2            1             50
  CLUS_3            1             70
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAAH MUTATED        0      2      1      1      1
  FAAH WILD-TYPE     84     83     84     68     46
D147V5, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            1             84
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAAH MUTATED        1      2      0      2
  FAAH WILD-TYPE     94     72    121     78
D147V6, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            1             94
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAAH MUTATED        1      0      2      2      0      0
  FAAH WILD-TYPE     51     64     70    102     40     59
D147V7, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            1             51
  CLUS_2            0             64
  CLUS_3            2             70
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAAH MUTATED        3      1      1
  FAAH WILD-TYPE    214     74     98
D147V8, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            3            214
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FAAH MUTATED        2      1      0
  FAAH WILD-TYPE    119    107     72
D147V9, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            2            119
  CLUS_2            1            107
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAAH MUTATED        1      0      0      1      1
  FAAH WILD-TYPE     87     66     45     54     46
D147V10, multiclass
        clus
vv       FAAH MUTATED FAAH WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            1             54
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(148) Variable = BTBD7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD7 MUTATED        2     15      3      0
  BTBD7 WILD-TYPE    202    122     44      3
D148V1, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            15             122
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD7 MUTATED        3     12      1      0      0
  BTBD7 WILD-TYPE     36     84     43     88     80
D148V2, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             3              36
  CLUS_2            12              84
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD7 MUTATED        1      6      6      0      4
  BTBD7 WILD-TYPE     25     73     67     82     54
D148V3, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             6              73
  CLUS_3             6              67
  CLUS_4             0              82
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD7 MUTATED        4      9      4      0
  BTBD7 WILD-TYPE    123     42     67     69
D148V4, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             9              42
  CLUS_3             4              67
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD7 MUTATED        0      3     11      3      2
  BTBD7 WILD-TYPE     84     82     74     66     45
D148V5, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3            11              74
  CLUS_4             3              66
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD7 MUTATED        6      2      0     11
  BTBD7 WILD-TYPE     89     72    121     69
D148V6, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4            11              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTBD7 MUTATED        3      8      4      3      2      0
  BTBD7 WILD-TYPE     49     56     68    101     38     59
D148V7, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             8              56
  CLUS_3             4              68
  CLUS_4             3             101
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTBD7 MUTATED       18      1      1
  BTBD7 WILD-TYPE    199     74     98
D148V8, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1            18             199
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTBD7 MUTATED        8      2      4
  BTBD7 WILD-TYPE    113    106     68
D148V9, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             8             113
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD7 MUTATED        6      1      2      0      5
  BTBD7 WILD-TYPE     82     65     43     55     42
D148V10, multiclass
        clus
vv       BTBD7 MUTATED BTBD7 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(149) Variable = MAGEE2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEE2 MUTATED        3      7      1      0
  MAGEE2 WILD-TYPE    201    130     46      3
D149V1, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              7              130
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGEE2 MUTATED        0      8      2      0      1
  MAGEE2 WILD-TYPE     39     88     42     88     79
D149V2, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              8               88
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGEE2 MUTATED        1      5      3      1      1
  MAGEE2 WILD-TYPE     25     74     70     81     57
D149V3, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              5               74
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEE2 MUTATED        3      4      3      1
  MAGEE2 WILD-TYPE    124     47     68     68
D149V4, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              4               47
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGEE2 MUTATED        0      3      5      2      0
  MAGEE2 WILD-TYPE     84     82     80     67     47
D149V5, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3              5               80
  CLUS_4              2               67
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAGEE2 MUTATED        2      3      1      4
  MAGEE2 WILD-TYPE     93     71    120     76
D149V6, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              3               71
  CLUS_3              1              120
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAGEE2 MUTATED        2      2      4      3      0      0
  MAGEE2 WILD-TYPE     50     62     68    101     40     59
D149V7, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              2               62
  CLUS_3              4               68
  CLUS_4              3              101
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEE2 MUTATED        9      1      1
  MAGEE2 WILD-TYPE    208     74     98
D149V8, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAGEE2 MUTATED        3      3      4
  MAGEE2 WILD-TYPE    118    105     68
D149V9, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              3              105
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAGEE2 MUTATED        1      3      3      0      3
  MAGEE2 WILD-TYPE     87     63     42     55     44
D149V10, multiclass
        clus
vv       MAGEE2 MUTATED MAGEE2 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              3               63
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(150) Variable = DOCK5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK5 MUTATED        0     24      1      0
  DOCK5 WILD-TYPE    204    113     46      3
D150V1, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            24             113
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOCK5 MUTATED        2     13      4      0      1
  DOCK5 WILD-TYPE     37     83     40     88     79
D150V2, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            13              83
  CLUS_3             4              40
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOCK5 MUTATED        1      7      6      1      5
  DOCK5 WILD-TYPE     25     72     67     81     53
D150V3, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             7              72
  CLUS_3             6              67
  CLUS_4             1              81
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK5 MUTATED        2     13      5      0
  DOCK5 WILD-TYPE    125     38     66     69
D150V4, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             2             125
  CLUS_2            13              38
  CLUS_3             5              66
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOCK5 MUTATED        1      3     13      4      1
  DOCK5 WILD-TYPE     83     82     72     65     46
D150V5, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3            13              72
  CLUS_4             4              65
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOCK5 MUTATED        8      0      1     13
  DOCK5 WILD-TYPE     87     74    120     67
D150V6, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             8              87
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4            13              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DOCK5 MUTATED        7      7      5      3      2      1
  DOCK5 WILD-TYPE     45     57     67    101     38     58
D150V7, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             7              45
  CLUS_2             7              57
  CLUS_3             5              67
  CLUS_4             3             101
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK5 MUTATED       22      0      3
  DOCK5 WILD-TYPE    195     75     96
D150V8, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1            22             195
  CLUS_2             0              75
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DOCK5 MUTATED       10      3      4
  DOCK5 WILD-TYPE    111    105     68
D150V9, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1            10             111
  CLUS_2             3             105
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOCK5 MUTATED        7      0      2      0      8
  DOCK5 WILD-TYPE     81     66     43     55     39
D150V10, multiclass
        clus
vv       DOCK5 MUTATED DOCK5 WILD-TYPE
  CLUS_1             7              81
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             8              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(151) Variable = ZFHX4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX4 MUTATED       20     43      4      0
  ZFHX4 WILD-TYPE    184     94     43      3
D151V1, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            20             184
  CLUS_2            43              94
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX4 MUTATED        2     26     11     13      4
  ZFHX4 WILD-TYPE     37     70     33     75     76
D151V2, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            26              70
  CLUS_3            11              33
  CLUS_4            13              75
  CLUS_5             4              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX4 MUTATED        2     23     16      8     11
  ZFHX4 WILD-TYPE     24     56     57     74     47
D151V3, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             2              24
  CLUS_2            23              56
  CLUS_3            16              57
  CLUS_4             8              74
  CLUS_5            11              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX4 MUTATED       20     19     15      6
  ZFHX4 WILD-TYPE    107     32     56     63
D151V4, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            20             107
  CLUS_2            19              32
  CLUS_3            15              56
  CLUS_4             6              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX4 MUTATED        9     11     27      9      9
  ZFHX4 WILD-TYPE     75     74     58     60     38
D151V5, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1             9              75
  CLUS_2            11              74
  CLUS_3            27              58
  CLUS_4             9              60
  CLUS_5             9              38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX4 MUTATED       11      9     17     28
  ZFHX4 WILD-TYPE     84     65    104     52
D151V6, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            11              84
  CLUS_2             9              65
  CLUS_3            17             104
  CLUS_4            28              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFHX4 MUTATED       15     17     12      8      6      9
  ZFHX4 WILD-TYPE     37     47     60     96     34     50
D151V7, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            15              37
  CLUS_2            17              47
  CLUS_3            12              60
  CLUS_4             8              96
  CLUS_5             6              34
  CLUS_6             9              50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX4 MUTATED       48      8     11
  ZFHX4 WILD-TYPE    169     67     88
D151V8, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            48             169
  CLUS_2             8              67
  CLUS_3            11              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX4 MUTATED       23     11     17
  ZFHX4 WILD-TYPE     98     97     55
D151V9, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            23              98
  CLUS_2            11              97
  CLUS_3            17              55
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX4 MUTATED       15      4      8      9     15
  ZFHX4 WILD-TYPE     73     62     37     46     32
D151V10, multiclass
        clus
vv       ZFHX4 MUTATED ZFHX4 WILD-TYPE
  CLUS_1            15              73
  CLUS_2             4              62
  CLUS_3             8              37
  CLUS_4             9              46
  CLUS_5            15              32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(152) Variable = FHDC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHDC1 MUTATED        5     11      1      0
  FHDC1 WILD-TYPE    199    126     46      3
D152V1, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             5             199
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHDC1 MUTATED        1      7      2      2      0
  FHDC1 WILD-TYPE     38     89     42     86     80
D152V2, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             7              89
  CLUS_3             2              42
  CLUS_4             2              86
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHDC1 MUTATED        1      7      2      3      3
  FHDC1 WILD-TYPE     25     72     71     79     55
D152V3, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             7              72
  CLUS_3             2              71
  CLUS_4             3              79
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHDC1 MUTATED        4      3      6      3
  FHDC1 WILD-TYPE    123     48     65     66
D152V4, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             3              48
  CLUS_3             6              65
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHDC1 MUTATED        1      3      8      3      2
  FHDC1 WILD-TYPE     83     82     77     66     45
D152V5, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             8              77
  CLUS_4             3              66
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FHDC1 MUTATED        5      4      2      6
  FHDC1 WILD-TYPE     90     70    119     74
D152V6, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             4              70
  CLUS_3             2             119
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FHDC1 MUTATED        2      6      3      3      2      1
  FHDC1 WILD-TYPE     50     58     69    101     38     58
D152V7, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             6              58
  CLUS_3             3              69
  CLUS_4             3             101
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHDC1 MUTATED       12      2      3
  FHDC1 WILD-TYPE    205     73     96
D152V8, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             2              73
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FHDC1 MUTATED        3      3      5
  FHDC1 WILD-TYPE    118    105     67
D152V9, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             3             105
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FHDC1 MUTATED        5      0      1      2      3
  FHDC1 WILD-TYPE     83     66     44     53     44
D152V10, multiclass
        clus
vv       FHDC1 MUTATED FHDC1 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             2              53
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(153) Variable = RB1CC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1CC1 MUTATED        2      9      3      0
  RB1CC1 WILD-TYPE    202    128     44      3
D153V1, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              9              128
  CLUS_3              3               44
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1CC1 MUTATED        0     10      0      2      1
  RB1CC1 WILD-TYPE     39     86     44     86     79
D153V2, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2             10               86
  CLUS_3              0               44
  CLUS_4              2               86
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1CC1 MUTATED        0      4      5      0      3
  RB1CC1 WILD-TYPE     26     75     68     82     55
D153V3, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              5               68
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1CC1 MUTATED        1      6      3      2
  RB1CC1 WILD-TYPE    126     45     68     67
D153V4, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              6               45
  CLUS_3              3               68
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1CC1 MUTATED        0      1      9      3      2
  RB1CC1 WILD-TYPE     84     84     76     66     45
D153V5, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              9               76
  CLUS_4              3               66
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1CC1 MUTATED        4      1      1      9
  RB1CC1 WILD-TYPE     91     73    120     71
D153V6, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              9               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RB1CC1 MUTATED        5      3      2      2      3      0
  RB1CC1 WILD-TYPE     47     61     70    102     37     59
D153V7, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              3               61
  CLUS_3              2               70
  CLUS_4              2              102
  CLUS_5              3               37
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RB1CC1 MUTATED       11      1      3
  RB1CC1 WILD-TYPE    206     74     96
D153V8, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1             11              206
  CLUS_2              1               74
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RB1CC1 MUTATED        8      1      1
  RB1CC1 WILD-TYPE    113    107     71
D153V9, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              8              113
  CLUS_2              1              107
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RB1CC1 MUTATED        4      0      1      0      5
  RB1CC1 WILD-TYPE     84     66     44     55     42
D153V10, multiclass
        clus
vv       RB1CC1 MUTATED RB1CC1 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(154) Variable = PRRG3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG3 MUTATED        1      6      1      0
  PRRG3 WILD-TYPE    203    131     46      3
D154V1, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             6             131
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRRG3 MUTATED        1      1      2      0      2
  PRRG3 WILD-TYPE     38     95     42     88     78
D154V2, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             1              95
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRRG3 MUTATED        1      3      2      0      1
  PRRG3 WILD-TYPE     25     76     71     82     57
D154V3, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG3 MUTATED        2      4      1      0
  PRRG3 WILD-TYPE    125     47     70     69
D154V4, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRRG3 MUTATED        0      0      5      0      2
  PRRG3 WILD-TYPE     84     85     80     69     45
D154V5, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRRG3 MUTATED        1      0      3      3
  PRRG3 WILD-TYPE     94     74    118     77
D154V6, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             3             118
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRRG3 MUTATED        1      5      1      1      0      0
  PRRG3 WILD-TYPE     51     59     71    103     40     59
D154V7, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             5              59
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRG3 MUTATED        7      1      0
  PRRG3 WILD-TYPE    210     74     99
D154V8, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRRG3 MUTATED        1      0      4
  PRRG3 WILD-TYPE    120    108     68
D154V9, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRRG3 MUTATED        1      0      3      0      1
  PRRG3 WILD-TYPE     87     66     42     55     46
D154V10, multiclass
        clus
vv       PRRG3 MUTATED PRRG3 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(155) Variable = KIAA1462 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1462 MUTATED        9     14      1      0
  KIAA1462 WILD-TYPE    195    123     46      3
D155V1, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                9                195
  CLUS_2               14                123
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1462 MUTATED        1     12      1      4      2
  KIAA1462 WILD-TYPE     38     84     43     84     78
D155V2, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2               12                 84
  CLUS_3                1                 43
  CLUS_4                4                 84
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1462 MUTATED        1      8      5      1      7
  KIAA1462 WILD-TYPE     25     71     68     81     51
D155V3, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                8                 71
  CLUS_3                5                 68
  CLUS_4                1                 81
  CLUS_5                7                 51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1462 MUTATED        7      8      6      1
  KIAA1462 WILD-TYPE    120     43     65     68
D155V4, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                7                120
  CLUS_2                8                 43
  CLUS_3                6                 65
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1462 MUTATED        3      3      9      3      4
  KIAA1462 WILD-TYPE     81     82     76     66     43
D155V5, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                3                 81
  CLUS_2                3                 82
  CLUS_3                9                 76
  CLUS_4                3                 66
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1462 MUTATED        6      1      4     11
  KIAA1462 WILD-TYPE     89     73    117     69
D155V6, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                6                 89
  CLUS_2                1                 73
  CLUS_3                4                117
  CLUS_4               11                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1462 MUTATED        8      6      4      3      0      3
  KIAA1462 WILD-TYPE     44     58     68    101     40     56
D155V7, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                8                 44
  CLUS_2                6                 58
  CLUS_3                4                 68
  CLUS_4                3                101
  CLUS_5                0                 40
  CLUS_6                3                 56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1462 MUTATED       19      1      4
  KIAA1462 WILD-TYPE    198     74     95
D155V8, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1               19                198
  CLUS_2                1                 74
  CLUS_3                4                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1462 MUTATED       10      3      6
  KIAA1462 WILD-TYPE    111    105     66
D155V9, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1               10                111
  CLUS_2                3                105
  CLUS_3                6                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1462 MUTATED        3      1      4      3      8
  KIAA1462 WILD-TYPE     85     65     41     52     39
D155V10, multiclass
        clus
vv       KIAA1462 MUTATED KIAA1462 WILD-TYPE
  CLUS_1                3                 85
  CLUS_2                1                 65
  CLUS_3                4                 41
  CLUS_4                3                 52
  CLUS_5                8                 39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(156) Variable = KCNJ10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNJ10 MUTATED        0     13      1      0
  KCNJ10 WILD-TYPE    204    124     46      3
D156V1, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              0              204
  CLUS_2             13              124
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNJ10 MUTATED        0     10      1      0      0
  KCNJ10 WILD-TYPE     39     86     43     88     80
D156V2, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              0               39
  CLUS_2             10               86
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNJ10 MUTATED        0      4      4      1      4
  KCNJ10 WILD-TYPE     26     75     69     81     54
D156V3, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNJ10 MUTATED        0     11      1      1
  KCNJ10 WILD-TYPE    127     40     70     68
D156V4, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              0              127
  CLUS_2             11               40
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNJ10 MUTATED        0      1      8      0      3
  KCNJ10 WILD-TYPE     84     84     77     69     44
D156V5, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              8               77
  CLUS_4              0               69
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNJ10 MUTATED        1      2      0      9
  KCNJ10 WILD-TYPE     94     72    121     71
D156V6, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              9               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNJ10 MUTATED        4      6      3      0      1      0
  KCNJ10 WILD-TYPE     48     58     69    104     39     59
D156V7, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              6               58
  CLUS_3              3               69
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCNJ10 MUTATED       13      1      0
  KCNJ10 WILD-TYPE    204     74     99
D156V8, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1             13              204
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCNJ10 MUTATED        5      0      6
  KCNJ10 WILD-TYPE    116    108     66
D156V9, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              0              108
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNJ10 MUTATED        2      0      3      0      6
  KCNJ10 WILD-TYPE     86     66     42     55     41
D156V10, multiclass
        clus
vv       KCNJ10 MUTATED KCNJ10 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(157) Variable = GANAB MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GANAB MUTATED        5     12      1      0
  GANAB WILD-TYPE    199    125     46      3
D157V1, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             5             199
  CLUS_2            12             125
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GANAB MUTATED        3     10      2      1      1
  GANAB WILD-TYPE     36     86     42     87     79
D157V2, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             3              36
  CLUS_2            10              86
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GANAB MUTATED        1      2      5      1      5
  GANAB WILD-TYPE     25     77     68     81     53
D157V3, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GANAB MUTATED        3      7      3      1
  GANAB WILD-TYPE    124     44     68     68
D157V4, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             3             124
  CLUS_2             7              44
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GANAB MUTATED        2      4     10      1      1
  GANAB WILD-TYPE     82     81     75     68     46
D157V5, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             2              82
  CLUS_2             4              81
  CLUS_3            10              75
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GANAB MUTATED        4      5      3      6
  GANAB WILD-TYPE     91     69    118     74
D157V6, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             4              91
  CLUS_2             5              69
  CLUS_3             3             118
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GANAB MUTATED        2      3      7      5      1      0
  GANAB WILD-TYPE     50     61     65     99     39     59
D157V7, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             7              65
  CLUS_4             5              99
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GANAB MUTATED       14      3      1
  GANAB WILD-TYPE    203     72     98
D157V8, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1            14             203
  CLUS_2             3              72
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GANAB MUTATED        4      3      8
  GANAB WILD-TYPE    117    105     64
D157V9, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             4             117
  CLUS_2             3             105
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GANAB MUTATED        6      2      3      0      4
  GANAB WILD-TYPE     82     64     42     55     43
D157V10, multiclass
        clus
vv       GANAB MUTATED GANAB WILD-TYPE
  CLUS_1             6              82
  CLUS_2             2              64
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(158) Variable = GPSM3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPSM3 MUTATED        5      6      1      0
  GPSM3 WILD-TYPE    199    131     46      3
D158V1, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             5             199
  CLUS_2             6             131
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPSM3 MUTATED        0      6      1      2      0
  GPSM3 WILD-TYPE     39     90     43     86     80
D158V2, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             2              86
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPSM3 MUTATED        0      4      1      0      3
  GPSM3 WILD-TYPE     26     75     72     82     55
D158V3, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPSM3 MUTATED        1      4      3      0
  GPSM3 WILD-TYPE    126     47     68     69
D158V4, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             3              68
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPSM3 MUTATED        2      2      5      3      0
  GPSM3 WILD-TYPE     82     83     80     66     47
D158V5, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             3              66
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPSM3 MUTATED        4      1      2      5
  GPSM3 WILD-TYPE     91     73    119     75
D158V6, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPSM3 MUTATED        2      3      4      1      1      1
  GPSM3 WILD-TYPE     50     61     68    103     39     58
D158V7, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             4              68
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPSM3 MUTATED       10      0      2
  GPSM3 WILD-TYPE    207     75     97
D158V8, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPSM3 MUTATED        3      1      2
  GPSM3 WILD-TYPE    118    107     70
D158V9, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPSM3 MUTATED        3      0      0      0      3
  GPSM3 WILD-TYPE     85     66     45     55     44
D158V10, multiclass
        clus
vv       GPSM3 MUTATED GPSM3 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(159) Variable = WNT16 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT16 MUTATED        0     12      0      0
  WNT16 WILD-TYPE    204    125     47      3
D159V1, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            12             125
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT16 MUTATED        0      7      1      0      2
  WNT16 WILD-TYPE     39     89     43     88     78
D159V2, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              89
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT16 MUTATED        1      3      1      1      2
  WNT16 WILD-TYPE     25     76     72     81     56
D159V3, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT16 MUTATED        1      4      2      1
  WNT16 WILD-TYPE    126     47     69     68
D159V4, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT16 MUTATED        0      2      7      2      1
  WNT16 WILD-TYPE     84     83     78     67     46
D159V5, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             7              78
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT16 MUTATED        3      1      1      7
  WNT16 WILD-TYPE     92     73    120     73
D159V6, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WNT16 MUTATED        2      3      4      1      2      0
  WNT16 WILD-TYPE     50     61     68    103     38     59
D159V7, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             4              68
  CLUS_4             1             103
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WNT16 MUTATED       10      1      1
  WNT16 WILD-TYPE    207     74     98
D159V8, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WNT16 MUTATED        3      2      3
  WNT16 WILD-TYPE    118    106     69
D159V9, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WNT16 MUTATED        3      0      1      0      4
  WNT16 WILD-TYPE     85     66     44     55     43
D159V10, multiclass
        clus
vv       WNT16 MUTATED WNT16 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(160) Variable = KIRREL MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL MUTATED       10      9      1      0
  KIRREL WILD-TYPE    194    128     46      3
D160V1, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1             10              194
  CLUS_2              9              128
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL MUTATED        2     10      1      4      1
  KIRREL WILD-TYPE     37     86     43     84     79
D160V2, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              2               37
  CLUS_2             10               86
  CLUS_3              1               43
  CLUS_4              4               84
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL MUTATED        0      4      3      5      2
  KIRREL WILD-TYPE     26     75     70     77     56
D160V3, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              3               70
  CLUS_4              5               77
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL MUTATED        2      3      3      6
  KIRREL WILD-TYPE    125     48     68     63
D160V4, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              2              125
  CLUS_2              3               48
  CLUS_3              3               68
  CLUS_4              6               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL MUTATED        4      2      9      4      0
  KIRREL WILD-TYPE     80     83     76     65     47
D160V5, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              4               80
  CLUS_2              2               83
  CLUS_3              9               76
  CLUS_4              4               65
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL MUTATED        6      3      6      4
  KIRREL WILD-TYPE     89     71    115     76
D160V6, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              6               89
  CLUS_2              3               71
  CLUS_3              6              115
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIRREL MUTATED        3      1      7      4      4      1
  KIRREL WILD-TYPE     49     63     65    100     36     58
D160V7, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              3               49
  CLUS_2              1               63
  CLUS_3              7               65
  CLUS_4              4              100
  CLUS_5              4               36
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIRREL MUTATED       12      4      4
  KIRREL WILD-TYPE    205     71     95
D160V8, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1             12              205
  CLUS_2              4               71
  CLUS_3              4               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIRREL MUTATED       10      2      5
  KIRREL WILD-TYPE    111    106     67
D160V9, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1             10              111
  CLUS_2              2              106
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL MUTATED        6      1      2      1      7
  KIRREL WILD-TYPE     82     65     43     54     40
D160V10, multiclass
        clus
vv       KIRREL MUTATED KIRREL WILD-TYPE
  CLUS_1              6               82
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              7               40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(161) Variable = MTMR9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR9 MUTATED        1     11      1      0
  MTMR9 WILD-TYPE    203    126     46      3
D161V1, multiclass
        clus
vv       MTMR9 MUTATED MTMR9 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTMR9 MUTATED        0      6      0      1      0
  MTMR9 WILD-TYPE     39     90     44     87     80
D161V2, multiclass
        clus
vv       MTMR9 MUTATED MTMR9 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             6              90
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTMR9 MUTATED        0      3      6      0      4
  MTMR9 WILD-TYPE     26     76     67     82     54
D161V3, multiclass
        clus
vv       MTMR9 MUTATED MTMR9 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             6              67
  CLUS_4             0              82
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR9 MUTATED        2     10      0      1
  MTMR9 WILD-TYPE    125     41     71     68
D161V4, multiclass
        clus
vv       MTMR9 MUTATED MTMR9 WILD-TYPE
  CLUS_1             2             125
  CLUS_2            10              41
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTMR9 MUTATED        1      2      5      1      3
  MTMR9 WILD-TYPE     83     83     80     68     44
D161V5, multiclass
        clus
vv       MTMR9 MUTATED MTMR9 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTMR9 MUTATED        4      2      1      5
  MTMR9 WILD-TYPE     91     72    120     75
D161V6, multiclass
        clus
vv       MTMR9 MUTATED MTMR9 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MTMR9 MUTATED        1      7      3      1      1      0
  MTMR9 WILD-TYPE     51     57     69    103     39     59
D161V7, multiclass
        clus
vv       MTMR9 MUTATED MTMR9 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             7              57
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTMR9 MUTATED       11      1      1
  MTMR9 WILD-TYPE    206     74     98
D161V8, multiclass
        clus
vv       MTMR9 MUTATED MTMR9 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTMR9 MUTATED        4      1      2
  MTMR9 WILD-TYPE    117    107     70
D161V9, multiclass
        clus
vv       MTMR9 MUTATED MTMR9 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTMR9 MUTATED        2      1      1      0      3
  MTMR9 WILD-TYPE     86     65     44     55     44
D161V10, multiclass
        clus
vv       MTMR9 MUTATED MTMR9 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(162) Variable = FAHD2B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2B MUTATED        0      8      1      0
  FAHD2B WILD-TYPE    204    129     46      3
D162V1, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              0              204
  CLUS_2              8              129
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAHD2B MUTATED        1      5      1      0      0
  FAHD2B WILD-TYPE     38     91     43     88     80
D162V2, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAHD2B MUTATED        0      5      1      0      3
  FAHD2B WILD-TYPE     26     74     72     82     55
D162V3, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              0               26
  CLUS_2              5               74
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2B MUTATED        1      5      3      0
  FAHD2B WILD-TYPE    126     46     68     69
D162V4, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              1              126
  CLUS_2              5               46
  CLUS_3              3               68
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAHD2B MUTATED        0      1      5      1      1
  FAHD2B WILD-TYPE     84     84     80     68     46
D162V5, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              5               80
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2B MUTATED        2      1      0      5
  FAHD2B WILD-TYPE     93     73    121     75
D162V6, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAHD2B MUTATED        3      3      2      1      0      0
  FAHD2B WILD-TYPE     49     61     70    103     40     59
D162V7, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              3               49
  CLUS_2              3               61
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAHD2B MUTATED        8      0      1
  FAHD2B WILD-TYPE    209     75     98
D162V8, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              8              209
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAHD2B MUTATED        2      2      2
  FAHD2B WILD-TYPE    119    106     70
D162V9, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              2              119
  CLUS_2              2              106
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAHD2B MUTATED        3      0      1      0      2
  FAHD2B WILD-TYPE     85     66     44     55     45
D162V10, multiclass
        clus
vv       FAHD2B MUTATED FAHD2B WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(163) Variable = KLRK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLRK1 MUTATED        0      5      0      0
  KLRK1 WILD-TYPE    204    132     47      3
D163V1, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             5             132
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLRK1 MUTATED        0      4      0      0      0
  KLRK1 WILD-TYPE     39     92     44     88     80
D163V2, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLRK1 MUTATED        0      1      0      2      1
  KLRK1 WILD-TYPE     26     78     73     80     57
D163V3, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             0              73
  CLUS_4             2              80
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLRK1 MUTATED        0      2      0      2
  KLRK1 WILD-TYPE    127     49     71     67
D163V4, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             2              49
  CLUS_3             0              71
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLRK1 MUTATED        0      1      2      0      2
  KLRK1 WILD-TYPE     84     84     83     69     45
D163V5, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             2              83
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLRK1 MUTATED        0      2      0      3
  KLRK1 WILD-TYPE     95     72    121     77
D163V6, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLRK1 MUTATED        3      1      0      0      1      0
  KLRK1 WILD-TYPE     49     63     72    104     39     59
D163V7, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             1              63
  CLUS_3             0              72
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLRK1 MUTATED        4      1      0
  KLRK1 WILD-TYPE    213     74     99
D163V8, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLRK1 MUTATED        3      0      1
  KLRK1 WILD-TYPE    118    108     71
D163V9, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0             108
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLRK1 MUTATED        1      0      0      0      3
  KLRK1 WILD-TYPE     87     66     45     55     44
D163V10, multiclass
        clus
vv       KLRK1 MUTATED KLRK1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(164) Variable = KLC2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLC2 MUTATED        2     10      2      0
  KLC2 WILD-TYPE    202    127     45      3
D164V1, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            2            202
  CLUS_2           10            127
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLC2 MUTATED        4      5      2      0      1
  KLC2 WILD-TYPE     35     91     42     88     79
D164V2, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            4             35
  CLUS_2            5             91
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLC2 MUTATED        1      5      2      1      1
  KLC2 WILD-TYPE     25     74     71     81     57
D164V3, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            5             74
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLC2 MUTATED        2      3      4      1
  KLC2 WILD-TYPE    125     48     67     68
D164V4, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            3             48
  CLUS_3            4             67
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLC2 MUTATED        1      1      7      2      0
  KLC2 WILD-TYPE     83     84     78     67     47
D164V5, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            1             84
  CLUS_3            7             78
  CLUS_4            2             67
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLC2 MUTATED        3      1      1      6
  KLC2 WILD-TYPE     92     73    120     74
D164V6, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLC2 MUTATED        2      5      3      1      2      1
  KLC2 WILD-TYPE     50     59     69    103     38     58
D164V7, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            5             59
  CLUS_3            3             69
  CLUS_4            1            103
  CLUS_5            2             38
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLC2 MUTATED       10      3      1
  KLC2 WILD-TYPE    207     72     98
D164V8, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1           10            207
  CLUS_2            3             72
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KLC2 MUTATED        5      0      5
  KLC2 WILD-TYPE    116    108     67
D164V9, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            0            108
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLC2 MUTATED        3      0      3      1      3
  KLC2 WILD-TYPE     85     66     42     54     44
D164V10, multiclass
        clus
vv       KLC2 MUTATED KLC2 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            3             42
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(165) Variable = WDR7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR7 MUTATED        1     19      1      0
  WDR7 WILD-TYPE    203    118     46      3
D165V1, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            1            203
  CLUS_2           19            118
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR7 MUTATED        1     10      3      1      2
  WDR7 WILD-TYPE     38     86     41     87     78
D165V2, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            1             38
  CLUS_2           10             86
  CLUS_3            3             41
  CLUS_4            1             87
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR7 MUTATED        1      8      8      2      1
  WDR7 WILD-TYPE     25     71     65     80     57
D165V3, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            8             71
  CLUS_3            8             65
  CLUS_4            2             80
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR7 MUTATED        2     10      6      2
  WDR7 WILD-TYPE    125     41     65     67
D165V4, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            2            125
  CLUS_2           10             41
  CLUS_3            6             65
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR7 MUTATED        1      5      8      1      5
  WDR7 WILD-TYPE     83     80     77     68     42
D165V5, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            5             80
  CLUS_3            8             77
  CLUS_4            1             68
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR7 MUTATED        4      3      3     10
  WDR7 WILD-TYPE     91     71    118     70
D165V6, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            3             71
  CLUS_3            3            118
  CLUS_4           10             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR7 MUTATED        4      9      2      5      1      1
  WDR7 WILD-TYPE     48     55     70     99     39     58
D165V7, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            9             55
  CLUS_3            2             70
  CLUS_4            5             99
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR7 MUTATED       16      4      2
  WDR7 WILD-TYPE    201     71     97
D165V8, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1           16            201
  CLUS_2            4             71
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR7 MUTATED        6      2      8
  WDR7 WILD-TYPE    115    106     64
D165V9, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            6            115
  CLUS_2            2            106
  CLUS_3            8             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR7 MUTATED        4      2      5      0      5
  WDR7 WILD-TYPE     84     64     40     55     42
D165V10, multiclass
        clus
vv       WDR7 MUTATED WDR7 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            2             64
  CLUS_3            5             40
  CLUS_4            0             55
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(166) Variable = TCHP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCHP MUTATED        2      8      2      0
  TCHP WILD-TYPE    202    129     45      3
D166V1, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            2            202
  CLUS_2            8            129
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCHP MUTATED        2      4      2      2      0
  TCHP WILD-TYPE     37     92     42     86     80
D166V2, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            2             37
  CLUS_2            4             92
  CLUS_3            2             42
  CLUS_4            2             86
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCHP MUTATED        1      3      3      1      2
  TCHP WILD-TYPE     25     76     70     81     56
D166V3, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCHP MUTATED        1      7      0      2
  TCHP WILD-TYPE    126     44     71     67
D166V4, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            1            126
  CLUS_2            7             44
  CLUS_3            0             71
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCHP MUTATED        2      1      5      1      1
  TCHP WILD-TYPE     82     84     80     68     46
D166V5, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            2             82
  CLUS_2            1             84
  CLUS_3            5             80
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCHP MUTATED        2      1      2      5
  TCHP WILD-TYPE     93     73    119     75
D166V6, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            2             93
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TCHP MUTATED        4      3      1      1      2      1
  TCHP WILD-TYPE     48     61     71    103     38     58
D166V7, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            4             48
  CLUS_2            3             61
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            2             38
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCHP MUTATED        9      0      3
  TCHP WILD-TYPE    208     75     96
D166V8, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            9            208
  CLUS_2            0             75
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TCHP MUTATED        6      2      2
  TCHP WILD-TYPE    115    106     70
D166V9, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            6            115
  CLUS_2            2            106
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCHP MUTATED        5      0      1      1      3
  TCHP WILD-TYPE     83     66     44     54     44
D166V10, multiclass
        clus
vv       TCHP MUTATED TCHP WILD-TYPE
  CLUS_1            5             83
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(167) Variable = SNRK MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNRK MUTATED        3     13      0      0
  SNRK WILD-TYPE    201    124     47      3
D167V1, multiclass
        clus
vv       SNRK MUTATED SNRK WILD-TYPE
  CLUS_1            3            201
  CLUS_2           13            124
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNRK MUTATED        0      6      2      2      3
  SNRK WILD-TYPE     39     90     42     86     77
D167V2, multiclass
        clus
vv       SNRK MUTATED SNRK WILD-TYPE
  CLUS_1            0             39
  CLUS_2            6             90
  CLUS_3            2             42
  CLUS_4            2             86
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNRK MUTATED        1      4      2      4      4
  SNRK WILD-TYPE     25     75     71     78     54
D167V3, multiclass
        clus
vv       SNRK MUTATED SNRK WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             75
  CLUS_3            2             71
  CLUS_4            4             78
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNRK MUTATED        4      4      2      5
  SNRK WILD-TYPE    123     47     69     64
D167V4, multiclass
        clus
vv       SNRK MUTATED SNRK WILD-TYPE
  CLUS_1            4            123
  CLUS_2            4             47
  CLUS_3            2             69
  CLUS_4            5             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNRK MUTATED        2      8      3      1      0
  SNRK WILD-TYPE     82     77     82     68     47
D167V5, multiclass
        clus
vv       SNRK MUTATED SNRK WILD-TYPE
  CLUS_1            2             82
  CLUS_2            8             77
  CLUS_3            3             82
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNRK MUTATED        2      5      4      3
  SNRK WILD-TYPE     93     69    117     77
D167V6, multiclass
        clus
vv       SNRK MUTATED SNRK WILD-TYPE
  CLUS_1            2             93
  CLUS_2            5             69
  CLUS_3            4            117
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SNRK MUTATED        2      5      1      7      0      1
  SNRK WILD-TYPE     50     59     71     97     40     58
D167V7, multiclass
        clus
vv       SNRK MUTATED SNRK WILD-TYPE
  CLUS_1            2             50
  CLUS_2            5             59
  CLUS_3            1             71
  CLUS_4            7             97
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SNRK MUTATED       11      2      3
  SNRK WILD-TYPE    206     73     96
D167V8, multiclass
        clus
vv       SNRK MUTATED SNRK WILD-TYPE
  CLUS_1           11            206
  CLUS_2            2             73
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SNRK MUTATED        2      6      4
  SNRK WILD-TYPE    119    102     68
D167V9, multiclass
        clus
vv       SNRK MUTATED SNRK WILD-TYPE
  CLUS_1            2            119
  CLUS_2            6            102
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNRK MUTATED        3      2      1      3      3
  SNRK WILD-TYPE     85     64     44     52     44
D167V10, multiclass
        clus
vv       SNRK MUTATED SNRK WILD-TYPE
  CLUS_1            3             85
  CLUS_2            2             64
  CLUS_3            1             44
  CLUS_4            3             52
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(168) Variable = SNAPC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC1 MUTATED        1      7      0      0
  SNAPC1 WILD-TYPE    203    130     47      3
D168V1, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNAPC1 MUTATED        0      6      2      0      0
  SNAPC1 WILD-TYPE     39     90     42     88     80
D168V2, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              6               90
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNAPC1 MUTATED        1      3      1      0      0
  SNAPC1 WILD-TYPE     25     76     72     82     58
D168V3, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC1 MUTATED        1      2      1      1
  SNAPC1 WILD-TYPE    126     49     70     68
D168V4, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNAPC1 MUTATED        0      1      5      2      0
  SNAPC1 WILD-TYPE     84     84     80     67     47
D168V5, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              5               80
  CLUS_4              2               67
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC1 MUTATED        2      2      0      4
  SNAPC1 WILD-TYPE     93     72    121     76
D168V6, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SNAPC1 MUTATED        2      3      2      0      1      0
  SNAPC1 WILD-TYPE     50     61     70    104     39     59
D168V7, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              3               61
  CLUS_3              2               70
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC1 MUTATED        7      0      1
  SNAPC1 WILD-TYPE    210     75     98
D168V8, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              7              210
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC1 MUTATED        5      0      2
  SNAPC1 WILD-TYPE    116    108     70
D168V9, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNAPC1 MUTATED        3      0      2      0      2
  SNAPC1 WILD-TYPE     85     66     43     55     45
D168V10, multiclass
        clus
vv       SNAPC1 MUTATED SNAPC1 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(169) Variable = ALG10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG10 MUTATED        4      9      1      0
  ALG10 WILD-TYPE    200    128     46      3
D169V1, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             4             200
  CLUS_2             9             128
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALG10 MUTATED        0      7      2      2      0
  ALG10 WILD-TYPE     39     89     42     86     80
D169V2, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              89
  CLUS_3             2              42
  CLUS_4             2              86
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALG10 MUTATED        1      5      5      1      2
  ALG10 WILD-TYPE     25     74     68     81     56
D169V3, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG10 MUTATED        6      5      3      0
  ALG10 WILD-TYPE    121     46     68     69
D169V4, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             6             121
  CLUS_2             5              46
  CLUS_3             3              68
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALG10 MUTATED        1      3      6      2      0
  ALG10 WILD-TYPE     83     82     79     67     47
D169V5, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             6              79
  CLUS_4             2              67
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALG10 MUTATED        3      2      2      5
  ALG10 WILD-TYPE     92     72    119     75
D169V6, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ALG10 MUTATED        2      6      2      2      0      2
  ALG10 WILD-TYPE     50     58     70    102     40     57
D169V7, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             6              58
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALG10 MUTATED       11      1      2
  ALG10 WILD-TYPE    206     74     97
D169V8, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALG10 MUTATED        2      2      5
  ALG10 WILD-TYPE    119    106     67
D169V9, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             2             106
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALG10 MUTATED        2      1      3      1      2
  ALG10 WILD-TYPE     86     65     42     54     45
D169V10, multiclass
        clus
vv       ALG10 MUTATED ALG10 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(170) Variable = HDLBP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDLBP MUTATED        9     18      3      0
  HDLBP WILD-TYPE    195    119     44      3
D170V1, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             9             195
  CLUS_2            18             119
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDLBP MUTATED        3     12      5      3      2
  HDLBP WILD-TYPE     36     84     39     85     78
D170V2, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             3              36
  CLUS_2            12              84
  CLUS_3             5              39
  CLUS_4             3              85
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDLBP MUTATED        4      9      6      1      6
  HDLBP WILD-TYPE     22     70     67     81     52
D170V3, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             4              22
  CLUS_2             9              70
  CLUS_3             6              67
  CLUS_4             1              81
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDLBP MUTATED        9      9      4      4
  HDLBP WILD-TYPE    118     42     67     65
D170V4, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             9             118
  CLUS_2             9              42
  CLUS_3             4              67
  CLUS_4             4              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDLBP MUTATED        5      5     15      2      4
  HDLBP WILD-TYPE     79     80     70     67     43
D170V5, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             5              79
  CLUS_2             5              80
  CLUS_3            15              70
  CLUS_4             2              67
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HDLBP MUTATED        7      4      6     14
  HDLBP WILD-TYPE     88     70    115     66
D170V6, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             7              88
  CLUS_2             4              70
  CLUS_3             6             115
  CLUS_4            14              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HDLBP MUTATED       10     10      6      3      0      2
  HDLBP WILD-TYPE     42     54     66    101     40     57
D170V7, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1            10              42
  CLUS_2            10              54
  CLUS_3             6              66
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDLBP MUTATED       24      2      5
  HDLBP WILD-TYPE    193     73     94
D170V8, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1            24             193
  CLUS_2             2              73
  CLUS_3             5              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HDLBP MUTATED       13      3      7
  HDLBP WILD-TYPE    108    105     65
D170V9, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1            13             108
  CLUS_2             3             105
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HDLBP MUTATED        7      1      4      2      9
  HDLBP WILD-TYPE     81     65     41     53     38
D170V10, multiclass
        clus
vv       HDLBP MUTATED HDLBP WILD-TYPE
  CLUS_1             7              81
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             2              53
  CLUS_5             9              38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(171) Variable = GRINA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRINA MUTATED        0      7      2      0
  GRINA WILD-TYPE    204    130     45      3
D171V1, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             0             204
  CLUS_2             7             130
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRINA MUTATED        1      5      1      0      1
  GRINA WILD-TYPE     38     91     43     88     79
D171V2, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRINA MUTATED        1      4      2      0      2
  GRINA WILD-TYPE     25     75     71     82     56
D171V3, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRINA MUTATED        2      4      3      0
  GRINA WILD-TYPE    125     47     68     69
D171V4, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             3              68
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRINA MUTATED        0      0      5      2      1
  GRINA WILD-TYPE     84     85     80     67     46
D171V5, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             5              80
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GRINA MUTATED        2      0      1      5
  GRINA WILD-TYPE     93     74    120     75
D171V6, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GRINA MUTATED        2      2      2      2      1      0
  GRINA WILD-TYPE     50     62     70    102     39     59
D171V7, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRINA MUTATED        8      1      0
  GRINA WILD-TYPE    209     74     99
D171V8, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             8             209
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GRINA MUTATED        3      1      4
  GRINA WILD-TYPE    118    107     68
D171V9, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GRINA MUTATED        3      1      1      0      3
  GRINA WILD-TYPE     85     65     44     55     44
D171V10, multiclass
        clus
vv       GRINA MUTATED GRINA WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(172) Variable = RAB42 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB42 MUTATED        0      5      0      0
  RAB42 WILD-TYPE    204    132     47      3
D172V1, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             5             132
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB42 MUTATED        0      4      0      0      0
  RAB42 WILD-TYPE     39     92     44     88     80
D172V2, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB42 MUTATED        0      1      1      1      1
  RAB42 WILD-TYPE     26     78     72     81     57
D172V3, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB42 MUTATED        1      2      0      1
  RAB42 WILD-TYPE    126     49     71     68
D172V4, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             2              49
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB42 MUTATED        0      1      1      1      2
  RAB42 WILD-TYPE     84     84     84     68     45
D172V5, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             1              84
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB42 MUTATED        2      1      0      2
  RAB42 WILD-TYPE     93     73    121     78
D172V6, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAB42 MUTATED        2      0      1      0      2      0
  RAB42 WILD-TYPE     50     64     71    104     38     59
D172V7, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             0              64
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB42 MUTATED        3      1      1
  RAB42 WILD-TYPE    214     74     98
D172V8, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             3             214
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB42 MUTATED        2      1      1
  RAB42 WILD-TYPE    119    107     71
D172V9, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB42 MUTATED        4      0      0      0      0
  RAB42 WILD-TYPE     84     66     45     55     47
D172V10, multiclass
        clus
vv       RAB42 MUTATED RAB42 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(173) Variable = SAMD9L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD9L MUTATED        5     14      3      0
  SAMD9L WILD-TYPE    199    123     44      3
D173V1, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              5              199
  CLUS_2             14              123
  CLUS_3              3               44
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SAMD9L MUTATED        3      7      6      2      1
  SAMD9L WILD-TYPE     36     89     38     86     79
D173V2, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              3               36
  CLUS_2              7               89
  CLUS_3              6               38
  CLUS_4              2               86
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SAMD9L MUTATED        2      8      5      2      4
  SAMD9L WILD-TYPE     24     71     68     80     54
D173V3, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              2               24
  CLUS_2              8               71
  CLUS_3              5               68
  CLUS_4              2               80
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD9L MUTATED        4     10      4      3
  SAMD9L WILD-TYPE    123     41     67     66
D173V4, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              4              123
  CLUS_2             10               41
  CLUS_3              4               67
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SAMD9L MUTATED        3      3     11      2      1
  SAMD9L WILD-TYPE     81     82     74     67     46
D173V5, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              3               81
  CLUS_2              3               82
  CLUS_3             11               74
  CLUS_4              2               67
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAMD9L MUTATED        4      3      6      7
  SAMD9L WILD-TYPE     91     71    115     73
D173V6, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              4               91
  CLUS_2              3               71
  CLUS_3              6              115
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SAMD9L MUTATED        5      8      4      1      1      3
  SAMD9L WILD-TYPE     47     56     68    103     39     56
D173V7, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              5               47
  CLUS_2              8               56
  CLUS_3              4               68
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              3               56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAMD9L MUTATED       17      2      3
  SAMD9L WILD-TYPE    200     73     96
D173V8, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1             17              200
  CLUS_2              2               73
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SAMD9L MUTATED        8      1      8
  SAMD9L WILD-TYPE    113    107     64
D173V9, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              8              113
  CLUS_2              1              107
  CLUS_3              8               64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SAMD9L MUTATED        5      1      6      1      4
  SAMD9L WILD-TYPE     83     65     39     54     43
D173V10, multiclass
        clus
vv       SAMD9L MUTATED SAMD9L WILD-TYPE
  CLUS_1              5               83
  CLUS_2              1               65
  CLUS_3              6               39
  CLUS_4              1               54
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(174) Variable = GLT6D1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT6D1 MUTATED        6      6      2      0
  GLT6D1 WILD-TYPE    198    131     45      3
D174V1, multiclass
        clus
vv       GLT6D1 MUTATED GLT6D1 WILD-TYPE
  CLUS_1              6              198
  CLUS_2              6              131
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLT6D1 MUTATED        2      4      3      2      2
  GLT6D1 WILD-TYPE     37     92     41     86     78
D174V2, multiclass
        clus
vv       GLT6D1 MUTATED GLT6D1 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              4               92
  CLUS_3              3               41
  CLUS_4              2               86
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLT6D1 MUTATED        1      3      3      0      3
  GLT6D1 WILD-TYPE     25     76     70     82     55
D174V3, multiclass
        clus
vv       GLT6D1 MUTATED GLT6D1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT6D1 MUTATED        6      2      2      0
  GLT6D1 WILD-TYPE    121     49     69     69
D174V4, multiclass
        clus
vv       GLT6D1 MUTATED GLT6D1 WILD-TYPE
  CLUS_1              6              121
  CLUS_2              2               49
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLT6D1 MUTATED        2      5      4      2      1
  GLT6D1 WILD-TYPE     82     80     81     67     46
D174V5, multiclass
        clus
vv       GLT6D1 MUTATED GLT6D1 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              5               80
  CLUS_3              4               81
  CLUS_4              2               67
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT6D1 MUTATED        2      6      2      4
  GLT6D1 WILD-TYPE     93     68    119     76
D174V6, multiclass
        clus
vv       GLT6D1 MUTATED GLT6D1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              6               68
  CLUS_3              2              119
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLT6D1 MUTATED        0      2      3      6      1      2
  GLT6D1 WILD-TYPE     52     62     69     98     39     57
D174V7, multiclass
        clus
vv       GLT6D1 MUTATED GLT6D1 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              2               62
  CLUS_3              3               69
  CLUS_4              6               98
  CLUS_5              1               39
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLT6D1 MUTATED        9      3      2
  GLT6D1 WILD-TYPE    208     72     97
D174V8, multiclass
        clus
vv       GLT6D1 MUTATED GLT6D1 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              3               72
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLT6D1 MUTATED        2      4      2
  GLT6D1 WILD-TYPE    119    104     70
D174V9, multiclass
        clus
vv       GLT6D1 MUTATED GLT6D1 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              4              104
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLT6D1 MUTATED        5      1      0      2      0
  GLT6D1 WILD-TYPE     83     65     45     53     47
D174V10, multiclass
        clus
vv       GLT6D1 MUTATED GLT6D1 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              1               65
  CLUS_3              0               45
  CLUS_4              2               53
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(175) Variable = SLC22A6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A6 MUTATED        2     10      2      0
  SLC22A6 WILD-TYPE    202    127     45      3
D175V1, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               2               202
  CLUS_2              10               127
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC22A6 MUTATED        0      7      1      1      1
  SLC22A6 WILD-TYPE     39     89     43     87     79
D175V2, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               7                89
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC22A6 MUTATED        1      2      3      3      4
  SLC22A6 WILD-TYPE     25     77     70     79     54
D175V3, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               2                77
  CLUS_3               3                70
  CLUS_4               3                79
  CLUS_5               4                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A6 MUTATED        3      5      1      4
  SLC22A6 WILD-TYPE    124     46     70     65
D175V4, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               5                46
  CLUS_3               1                70
  CLUS_4               4                65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC22A6 MUTATED        1      4      6      1      2
  SLC22A6 WILD-TYPE     83     81     79     68     45
D175V5, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               4                81
  CLUS_3               6                79
  CLUS_4               1                68
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A6 MUTATED        4      4      1      5
  SLC22A6 WILD-TYPE     91     70    120     75
D175V6, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               4                70
  CLUS_3               1               120
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC22A6 MUTATED        2      6      2      2      1      1
  SLC22A6 WILD-TYPE     50     58     70    102     39     58
D175V7, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               6                58
  CLUS_3               2                70
  CLUS_4               2               102
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A6 MUTATED        9      3      2
  SLC22A6 WILD-TYPE    208     72     97
D175V8, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               9               208
  CLUS_2               3                72
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC22A6 MUTATED        3      1      5
  SLC22A6 WILD-TYPE    118    107     67
D175V9, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               1               107
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC22A6 MUTATED        3      1      2      0      3
  SLC22A6 WILD-TYPE     85     65     43     55     44
D175V10, multiclass
        clus
vv       SLC22A6 MUTATED SLC22A6 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(176) Variable = SVIL MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SVIL MUTATED        4     25      1      0
  SVIL WILD-TYPE    200    112     46      3
D176V1, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            4            200
  CLUS_2           25            112
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SVIL MUTATED        2     16      2      0      4
  SVIL WILD-TYPE     37     80     42     88     76
D176V2, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            2             37
  CLUS_2           16             80
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            4             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SVIL MUTATED        4      3      9      4      4
  SVIL WILD-TYPE     22     76     64     78     54
D176V3, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            4             22
  CLUS_2            3             76
  CLUS_3            9             64
  CLUS_4            4             78
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SVIL MUTATED        6     11      2      5
  SVIL WILD-TYPE    121     40     69     64
D176V4, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            6            121
  CLUS_2           11             40
  CLUS_3            2             69
  CLUS_4            5             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SVIL MUTATED        1      5     14      4      4
  SVIL WILD-TYPE     83     80     71     65     43
D176V5, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            1             83
  CLUS_2            5             80
  CLUS_3           14             71
  CLUS_4            4             65
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SVIL MUTATED        8      5      2     13
  SVIL WILD-TYPE     87     69    119     67
D176V6, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            8             87
  CLUS_2            5             69
  CLUS_3            2            119
  CLUS_4           13             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SVIL MUTATED        6      9      5      6      3      1
  SVIL WILD-TYPE     46     55     67     98     37     58
D176V7, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            6             46
  CLUS_2            9             55
  CLUS_3            5             67
  CLUS_4            6             98
  CLUS_5            3             37
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SVIL MUTATED       21      6      3
  SVIL WILD-TYPE    196     69     96
D176V8, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1           21            196
  CLUS_2            6             69
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SVIL MUTATED       12      3      8
  SVIL WILD-TYPE    109    105     64
D176V9, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1           12            109
  CLUS_2            3            105
  CLUS_3            8             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SVIL MUTATED        6      4      4      0      9
  SVIL WILD-TYPE     82     62     41     55     38
D176V10, multiclass
        clus
vv       SVIL MUTATED SVIL WILD-TYPE
  CLUS_1            6             82
  CLUS_2            4             62
  CLUS_3            4             41
  CLUS_4            0             55
  CLUS_5            9             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(177) Variable = CCDC148 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC148 MUTATED        2      6      0      0
  CCDC148 WILD-TYPE    202    131     47      3
D177V1, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               6               131
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC148 MUTATED        0      7      0      0      1
  CCDC148 WILD-TYPE     39     89     44     88     79
D177V2, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               7                89
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC148 MUTATED        1      0      3      1      1
  CCDC148 WILD-TYPE     25     79     70     81     57
D177V3, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                79
  CLUS_3               3                70
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC148 MUTATED        2      3      0      1
  CCDC148 WILD-TYPE    125     48     71     68
D177V4, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               3                48
  CLUS_3               0                71
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC148 MUTATED        0      0      4      3      1
  CCDC148 WILD-TYPE     84     85     81     66     46
D177V5, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               4                81
  CLUS_4               3                66
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC148 MUTATED        4      0      0      4
  CCDC148 WILD-TYPE     91     74    121     76
D177V6, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               0                74
  CLUS_3               0               121
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC148 MUTATED        4      2      1      0      1      0
  CCDC148 WILD-TYPE     48     62     71    104     39     59
D177V7, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               2                62
  CLUS_3               1                71
  CLUS_4               0               104
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC148 MUTATED        7      1      0
  CCDC148 WILD-TYPE    210     74     99
D177V8, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               7               210
  CLUS_2               1                74
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC148 MUTATED        4      0      3
  CCDC148 WILD-TYPE    117    108     69
D177V9, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               0               108
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC148 MUTATED        0      1      1      0      5
  CCDC148 WILD-TYPE     88     65     44     55     42
D177V10, multiclass
        clus
vv       CCDC148 MUTATED CCDC148 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               1                65
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(178) Variable = MOBKL1A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOBKL1A MUTATED        0      4      1      0
  MOBKL1A WILD-TYPE    204    133     46      3
D178V1, multiclass
        clus
vv       MOBKL1A MUTATED MOBKL1A WILD-TYPE
  CLUS_1               0               204
  CLUS_2               4               133
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOBKL1A MUTATED        0      3      0      0      1
  MOBKL1A WILD-TYPE     39     93     44     88     79
D178V2, multiclass
        clus
vv       MOBKL1A MUTATED MOBKL1A WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOBKL1A MUTATED        0      2      1      1      1
  MOBKL1A WILD-TYPE     26     77     72     81     57
D178V3, multiclass
        clus
vv       MOBKL1A MUTATED MOBKL1A WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               1                72
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOBKL1A MUTATED        1      2      1      1
  MOBKL1A WILD-TYPE    126     49     70     68
D178V4, multiclass
        clus
vv       MOBKL1A MUTATED MOBKL1A WILD-TYPE
  CLUS_1               1               126
  CLUS_2               2                49
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOBKL1A MUTATED        0      1      3      0      2
  MOBKL1A WILD-TYPE     84     84     82     69     45
D178V5, multiclass
        clus
vv       MOBKL1A MUTATED MOBKL1A WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               3                82
  CLUS_4               0                69
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOBKL1A MUTATED        2      1      1      2
  MOBKL1A WILD-TYPE     93     73    120     78
D178V6, multiclass
        clus
vv       MOBKL1A MUTATED MOBKL1A WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MOBKL1A MUTATED        2      4      0      0      0      0
  MOBKL1A WILD-TYPE     50     60     72    104     40     59
D178V7, multiclass
        clus
vv       MOBKL1A MUTATED MOBKL1A WILD-TYPE
  CLUS_1               2                50
  CLUS_2               4                60
  CLUS_3               0                72
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MOBKL1A MUTATED        5      1      0
  MOBKL1A WILD-TYPE    212     74     99
D178V8, multiclass
        clus
vv       MOBKL1A MUTATED MOBKL1A WILD-TYPE
  CLUS_1               5               212
  CLUS_2               1                74
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MOBKL1A MUTATED        2      0      2
  MOBKL1A WILD-TYPE    119    108     70
D178V9, multiclass
        clus
vv       MOBKL1A MUTATED MOBKL1A WILD-TYPE
  CLUS_1               2               119
  CLUS_2               0               108
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOBKL1A MUTATED        0      0      2      0      2
  MOBKL1A WILD-TYPE     88     66     43     55     45
D178V10, multiclass
        clus
vv       MOBKL1A MUTATED MOBKL1A WILD-TYPE
  CLUS_1               0                88
  CLUS_2               0                66
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(179) Variable = SETDB2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETDB2 MUTATED        3      8      1      0
  SETDB2 WILD-TYPE    201    129     46      3
D179V1, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              8              129
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETDB2 MUTATED        1      4      1      0      0
  SETDB2 WILD-TYPE     38     92     43     88     80
D179V2, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETDB2 MUTATED        0      8      3      0      1
  SETDB2 WILD-TYPE     26     71     70     82     57
D179V3, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              8               71
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETDB2 MUTATED        3      6      3      0
  SETDB2 WILD-TYPE    124     45     68     69
D179V4, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              6               45
  CLUS_3              3               68
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETDB2 MUTATED        2      1      6      0      2
  SETDB2 WILD-TYPE     82     84     79     69     45
D179V5, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              1               84
  CLUS_3              6               79
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SETDB2 MUTATED        2      3      2      4
  SETDB2 WILD-TYPE     93     71    119     76
D179V6, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              3               71
  CLUS_3              2              119
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SETDB2 MUTATED        1      8      1      1      1      0
  SETDB2 WILD-TYPE     51     56     71    103     39     59
D179V7, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              8               56
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SETDB2 MUTATED       12      0      0
  SETDB2 WILD-TYPE    205     75     99
D179V8, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1             12              205
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SETDB2 MUTATED        3      1      2
  SETDB2 WILD-TYPE    118    107     70
D179V9, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SETDB2 MUTATED        2      0      2      0      2
  SETDB2 WILD-TYPE     86     66     43     55     45
D179V10, multiclass
        clus
vv       SETDB2 MUTATED SETDB2 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(180) Variable = ZNF43 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF43 MUTATED        5     14      6      0
  ZNF43 WILD-TYPE    199    123     41      3
D180V1, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             5             199
  CLUS_2            14             123
  CLUS_3             6              41
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF43 MUTATED        1      9      4      2      5
  ZNF43 WILD-TYPE     38     87     40     86     75
D180V2, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             9              87
  CLUS_3             4              40
  CLUS_4             2              86
  CLUS_5             5              75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF43 MUTATED        3      4      5      5      6
  ZNF43 WILD-TYPE     23     75     68     77     52
D180V3, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             4              75
  CLUS_3             5              68
  CLUS_4             5              77
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF43 MUTATED        6     10      4      3
  ZNF43 WILD-TYPE    121     41     67     66
D180V4, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             6             121
  CLUS_2            10              41
  CLUS_3             4              67
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF43 MUTATED        2      4     10      1      6
  ZNF43 WILD-TYPE     82     81     75     68     41
D180V5, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             4              81
  CLUS_3            10              75
  CLUS_4             1              68
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF43 MUTATED        5      1      5     12
  ZNF43 WILD-TYPE     90     73    116     68
D180V6, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             1              73
  CLUS_3             5             116
  CLUS_4            12              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF43 MUTATED        4      9      4      2      4      1
  ZNF43 WILD-TYPE     48     55     68    102     36     58
D180V7, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             9              55
  CLUS_3             4              68
  CLUS_4             2             102
  CLUS_5             4              36
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF43 MUTATED       22      1      1
  ZNF43 WILD-TYPE    195     74     98
D180V8, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1            22             195
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF43 MUTATED        3      4     10
  ZNF43 WILD-TYPE    118    104     62
D180V9, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             4             104
  CLUS_3            10              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF43 MUTATED        5      2      6      1      3
  ZNF43 WILD-TYPE     83     64     39     54     44
D180V10, multiclass
        clus
vv       ZNF43 MUTATED ZNF43 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             2              64
  CLUS_3             6              39
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(181) Variable = NOX5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOX5 MUTATED        4     11      2      0
  NOX5 WILD-TYPE    200    126     45      3
D181V1, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            4            200
  CLUS_2           11            126
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOX5 MUTATED        3      7      1      1      2
  NOX5 WILD-TYPE     36     89     43     87     78
D181V2, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            3             36
  CLUS_2            7             89
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOX5 MUTATED        1      6      2      2      4
  NOX5 WILD-TYPE     25     73     71     80     54
D181V3, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            6             73
  CLUS_3            2             71
  CLUS_4            2             80
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOX5 MUTATED        4      6      3      2
  NOX5 WILD-TYPE    123     45     68     67
D181V4, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            4            123
  CLUS_2            6             45
  CLUS_3            3             68
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOX5 MUTATED        0      6      5      2      3
  NOX5 WILD-TYPE     84     79     80     67     44
D181V5, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            6             79
  CLUS_3            5             80
  CLUS_4            2             67
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOX5 MUTATED        5      2      3      6
  NOX5 WILD-TYPE     90     72    118     74
D181V6, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            5             90
  CLUS_2            2             72
  CLUS_3            3            118
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOX5 MUTATED        3      6      3      1      3      1
  NOX5 WILD-TYPE     49     58     69    103     37     58
D181V7, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            6             58
  CLUS_3            3             69
  CLUS_4            1            103
  CLUS_5            3             37
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOX5 MUTATED       13      1      3
  NOX5 WILD-TYPE    204     74     96
D181V8, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1           13            204
  CLUS_2            1             74
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOX5 MUTATED        8      2      3
  NOX5 WILD-TYPE    113    106     69
D181V9, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            8            113
  CLUS_2            2            106
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOX5 MUTATED        3      1      2      1      6
  NOX5 WILD-TYPE     85     65     43     54     41
D181V10, multiclass
        clus
vv       NOX5 MUTATED NOX5 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            2             43
  CLUS_4            1             54
  CLUS_5            6             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(182) Variable = ANKRD34A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD34A MUTATED        1      8      2      0
  ANKRD34A WILD-TYPE    203    129     45      3
D182V1, multiclass
        clus
vv       ANKRD34A MUTATED ANKRD34A WILD-TYPE
  CLUS_1                1                203
  CLUS_2                8                129
  CLUS_3                2                 45
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD34A MUTATED        1      6      0      1      1
  ANKRD34A WILD-TYPE     38     90     44     87     79
D182V2, multiclass
        clus
vv       ANKRD34A MUTATED ANKRD34A WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                6                 90
  CLUS_3                0                 44
  CLUS_4                1                 87
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD34A MUTATED        1      1      3      1      2
  ANKRD34A WILD-TYPE     25     78     70     81     56
D182V3, multiclass
        clus
vv       ANKRD34A MUTATED ANKRD34A WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                 78
  CLUS_3                3                 70
  CLUS_4                1                 81
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD34A MUTATED        2      4      1      1
  ANKRD34A WILD-TYPE    125     47     70     68
D182V4, multiclass
        clus
vv       ANKRD34A MUTATED ANKRD34A WILD-TYPE
  CLUS_1                2                125
  CLUS_2                4                 47
  CLUS_3                1                 70
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD34A MUTATED        2      2      6      1      0
  ANKRD34A WILD-TYPE     82     83     79     68     47
D182V5, multiclass
        clus
vv       ANKRD34A MUTATED ANKRD34A WILD-TYPE
  CLUS_1                2                 82
  CLUS_2                2                 83
  CLUS_3                6                 79
  CLUS_4                1                 68
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD34A MUTATED        2      2      2      5
  ANKRD34A WILD-TYPE     93     72    119     75
D182V6, multiclass
        clus
vv       ANKRD34A MUTATED ANKRD34A WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                2                 72
  CLUS_3                2                119
  CLUS_4                5                 75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANKRD34A MUTATED        3      2      3      2      0      1
  ANKRD34A WILD-TYPE     49     62     69    102     40     58
D182V7, multiclass
        clus
vv       ANKRD34A MUTATED ANKRD34A WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                2                 62
  CLUS_3                3                 69
  CLUS_4                2                102
  CLUS_5                0                 40
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ANKRD34A MUTATED        8      2      1
  ANKRD34A WILD-TYPE    209     73     98
D182V8, multiclass
        clus
vv       ANKRD34A MUTATED ANKRD34A WILD-TYPE
  CLUS_1                8                209
  CLUS_2                2                 73
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ANKRD34A MUTATED        4      1      3
  ANKRD34A WILD-TYPE    117    107     69
D182V9, multiclass
        clus
vv       ANKRD34A MUTATED ANKRD34A WILD-TYPE
  CLUS_1                4                117
  CLUS_2                1                107
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD34A MUTATED        1      1      1      0      5
  ANKRD34A WILD-TYPE     87     65     44     55     42
D182V10, multiclass
        clus
vv       ANKRD34A MUTATED ANKRD34A WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                1                 65
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                5                 42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(183) Variable = PHACTR4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR4 MUTATED        2      8      0      0
  PHACTR4 WILD-TYPE    202    129     47      3
D183V1, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               8               129
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR4 MUTATED        0      9      0      0      0
  PHACTR4 WILD-TYPE     39     87     44     88     80
D183V2, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               9                87
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR4 MUTATED        0      2      3      0      2
  PHACTR4 WILD-TYPE     26     77     70     82     56
D183V3, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               3                70
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR4 MUTATED        0      6      1      0
  PHACTR4 WILD-TYPE    127     45     70     69
D183V4, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               6                45
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR4 MUTATED        0      1      7      0      0
  PHACTR4 WILD-TYPE     84     84     78     69     47
D183V5, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               7                78
  CLUS_4               0                69
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR4 MUTATED        1      1      1      5
  PHACTR4 WILD-TYPE     94     73    120     75
D183V6, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHACTR4 MUTATED        3      4      2      1      0      0
  PHACTR4 WILD-TYPE     49     60     70    103     40     59
D183V7, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               4                60
  CLUS_3               2                70
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR4 MUTATED        9      1      0
  PHACTR4 WILD-TYPE    208     74     99
D183V8, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               9               208
  CLUS_2               1                74
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR4 MUTATED        3      1      5
  PHACTR4 WILD-TYPE    118    107     67
D183V9, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               1               107
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR4 MUTATED        1      1      3      0      4
  PHACTR4 WILD-TYPE     87     65     42     55     43
D183V10, multiclass
        clus
vv       PHACTR4 MUTATED PHACTR4 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               1                65
  CLUS_3               3                42
  CLUS_4               0                55
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(184) Variable = RAD50 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD50 MUTATED        1     11      0      0
  RAD50 WILD-TYPE    203    126     47      3
D184V1, multiclass
        clus
vv       RAD50 MUTATED RAD50 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            11             126
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD50 MUTATED        0      8      0      0      1
  RAD50 WILD-TYPE     39     88     44     88     79
D184V2, multiclass
        clus
vv       RAD50 MUTATED RAD50 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             8              88
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD50 MUTATED        1      4      3      1      2
  RAD50 WILD-TYPE     25     75     70     81     56
D184V3, multiclass
        clus
vv       RAD50 MUTATED RAD50 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD50 MUTATED        3      5      2      1
  RAD50 WILD-TYPE    124     46     69     68
D184V4, multiclass
        clus
vv       RAD50 MUTATED RAD50 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD50 MUTATED        0      1      6      1      4
  RAD50 WILD-TYPE     84     84     79     68     43
D184V5, multiclass
        clus
vv       RAD50 MUTATED RAD50 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD50 MUTATED        4      1      1      6
  RAD50 WILD-TYPE     91     73    120     74
D184V6, multiclass
        clus
vv       RAD50 MUTATED RAD50 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAD50 MUTATED        4      4      3      1      0      0
  RAD50 WILD-TYPE     48     60     69    103     40     59
D184V7, multiclass
        clus
vv       RAD50 MUTATED RAD50 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             4              60
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAD50 MUTATED       10      1      1
  RAD50 WILD-TYPE    207     74     98
D184V8, multiclass
        clus
vv       RAD50 MUTATED RAD50 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAD50 MUTATED        3      1      3
  RAD50 WILD-TYPE    118    107     69
D184V9, multiclass
        clus
vv       RAD50 MUTATED RAD50 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD50 MUTATED        2      0      1      0      4
  RAD50 WILD-TYPE     86     66     44     55     43
D184V10, multiclass
        clus
vv       RAD50 MUTATED RAD50 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(185) Variable = JAK1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK1 MUTATED        2     12      2      0
  JAK1 WILD-TYPE    202    125     45      3
D185V1, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            2            202
  CLUS_2           12            125
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JAK1 MUTATED        2      9      1      1      0
  JAK1 WILD-TYPE     37     87     43     87     80
D185V2, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            9             87
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JAK1 MUTATED        1      5      3      1      4
  JAK1 WILD-TYPE     25     74     70     81     54
D185V3, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            5             74
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK1 MUTATED        4      6      3      1
  JAK1 WILD-TYPE    123     45     68     68
D185V4, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            4            123
  CLUS_2            6             45
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JAK1 MUTATED        1      1     11      3      0
  JAK1 WILD-TYPE     83     84     74     66     47
D185V5, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            1             84
  CLUS_3           11             74
  CLUS_4            3             66
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JAK1 MUTATED        6      3      0      7
  JAK1 WILD-TYPE     89     71    121     73
D185V6, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            6             89
  CLUS_2            3             71
  CLUS_3            0            121
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  JAK1 MUTATED        5      4      4      3      0      1
  JAK1 WILD-TYPE     47     60     68    101     40     58
D185V7, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            5             47
  CLUS_2            4             60
  CLUS_3            4             68
  CLUS_4            3            101
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK1 MUTATED       14      1      2
  JAK1 WILD-TYPE    203     74     97
D185V8, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1           14            203
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  JAK1 MUTATED        7      1      3
  JAK1 WILD-TYPE    114    107     69
D185V9, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            7            114
  CLUS_2            1            107
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JAK1 MUTATED        2      1      1      1      6
  JAK1 WILD-TYPE     86     65     44     54     41
D185V10, multiclass
        clus
vv       JAK1 MUTATED JAK1 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            6             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(186) Variable = FAM155B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM155B MUTATED        4      7      2      0
  FAM155B WILD-TYPE    200    130     45      3
D186V1, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               4               200
  CLUS_2               7               130
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM155B MUTATED        2      9      0      1      0
  FAM155B WILD-TYPE     37     87     44     87     80
D186V2, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               2                37
  CLUS_2               9                87
  CLUS_3               0                44
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM155B MUTATED        0      3      2      1      3
  FAM155B WILD-TYPE     26     76     71     81     55
D186V3, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               0                26
  CLUS_2               3                76
  CLUS_3               2                71
  CLUS_4               1                81
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM155B MUTATED        2      4      2      1
  FAM155B WILD-TYPE    125     47     69     68
D186V4, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               2               125
  CLUS_2               4                47
  CLUS_3               2                69
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM155B MUTATED        2      1      7      2      1
  FAM155B WILD-TYPE     82     84     78     67     46
D186V5, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               2                82
  CLUS_2               1                84
  CLUS_3               7                78
  CLUS_4               2                67
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM155B MUTATED        2      1      3      7
  FAM155B WILD-TYPE     93     73    118     73
D186V6, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               3               118
  CLUS_4               7                73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM155B MUTATED        2      1      6      3      0      1
  FAM155B WILD-TYPE     50     63     66    101     40     58
D186V7, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               2                50
  CLUS_2               1                63
  CLUS_3               6                66
  CLUS_4               3               101
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM155B MUTATED       11      0      2
  FAM155B WILD-TYPE    206     75     97
D186V8, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1              11               206
  CLUS_2               0                75
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM155B MUTATED        9      1      1
  FAM155B WILD-TYPE    112    107     71
D186V9, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               9               112
  CLUS_2               1               107
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM155B MUTATED        7      0      0      0      4
  FAM155B WILD-TYPE     81     66     45     55     43
D186V10, multiclass
        clus
vv       FAM155B MUTATED FAM155B WILD-TYPE
  CLUS_1               7                81
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(187) Variable = DIDO1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIDO1 MUTATED       10     21      6      0
  DIDO1 WILD-TYPE    194    116     41      3
D187V1, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1            10             194
  CLUS_2            21             116
  CLUS_3             6              41
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIDO1 MUTATED        4     18      3      5      2
  DIDO1 WILD-TYPE     35     78     41     83     78
D187V2, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             4              35
  CLUS_2            18              78
  CLUS_3             3              41
  CLUS_4             5              83
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIDO1 MUTATED        2      7      8      4      8
  DIDO1 WILD-TYPE     24     72     65     78     50
D187V3, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             7              72
  CLUS_3             8              65
  CLUS_4             4              78
  CLUS_5             8              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIDO1 MUTATED        7     15      4      3
  DIDO1 WILD-TYPE    120     36     67     66
D187V4, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             7             120
  CLUS_2            15              36
  CLUS_3             4              67
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIDO1 MUTATED        6      5     15      4      6
  DIDO1 WILD-TYPE     78     80     70     65     41
D187V5, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             6              78
  CLUS_2             5              80
  CLUS_3            15              70
  CLUS_4             4              65
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIDO1 MUTATED        7      3      8     18
  DIDO1 WILD-TYPE     88     71    113     62
D187V6, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             3              71
  CLUS_3             8             113
  CLUS_4            18              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DIDO1 MUTATED        9     10     11      2      2      4
  DIDO1 WILD-TYPE     43     54     61    102     38     55
D187V7, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1             9              43
  CLUS_2            10              54
  CLUS_3            11              61
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             4              55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DIDO1 MUTATED       31      3      4
  DIDO1 WILD-TYPE    186     72     95
D187V8, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1            31             186
  CLUS_2             3              72
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DIDO1 MUTATED       18      3      6
  DIDO1 WILD-TYPE    103    105     66
D187V9, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1            18             103
  CLUS_2             3             105
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIDO1 MUTATED       10      1      3      2     11
  DIDO1 WILD-TYPE     78     65     42     53     36
D187V10, multiclass
        clus
vv       DIDO1 MUTATED DIDO1 WILD-TYPE
  CLUS_1            10              78
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             2              53
  CLUS_5            11              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(188) Variable = CASP8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED        2     14      2      0
  CASP8 WILD-TYPE    202    123     45      3
D188V1, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            14             123
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP8 MUTATED        1      7      3      1      0
  CASP8 WILD-TYPE     38     89     41     87     80
D188V2, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             7              89
  CLUS_3             3              41
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP8 MUTATED        0      3      5      3      5
  CASP8 WILD-TYPE     26     76     68     79     53
D188V3, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             5              68
  CLUS_4             3              79
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED        4      6      2      4
  CASP8 WILD-TYPE    123     45     69     65
D188V4, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             6              45
  CLUS_3             2              69
  CLUS_4             4              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP8 MUTATED        0      3      6      5      3
  CASP8 WILD-TYPE     84     82     79     64     44
D188V5, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             6              79
  CLUS_4             5              64
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP8 MUTATED        7      4      1      5
  CASP8 WILD-TYPE     88     70    120     75
D188V6, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             4              70
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASP8 MUTATED        3      6      4      3      2      0
  CASP8 WILD-TYPE     49     58     68    101     38     59
D188V7, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             6              58
  CLUS_3             4              68
  CLUS_4             3             101
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED       13      2      3
  CASP8 WILD-TYPE    204     73     96
D188V8, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1            13             204
  CLUS_2             2              73
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP8 MUTATED        3      3      4
  CASP8 WILD-TYPE    118    105     68
D188V9, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             3             105
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP8 MUTATED        3      1      2      1      3
  CASP8 WILD-TYPE     85     65     43     54     44
D188V10, multiclass
        clus
vv       CASP8 MUTATED CASP8 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(189) Variable = NWD1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NWD1 MUTATED       13     15      3      0
  NWD1 WILD-TYPE    191    122     44      3
D189V1, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1           13            191
  CLUS_2           15            122
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NWD1 MUTATED        3     15      6      2      4
  NWD1 WILD-TYPE     36     81     38     86     76
D189V2, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            3             36
  CLUS_2           15             81
  CLUS_3            6             38
  CLUS_4            2             86
  CLUS_5            4             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NWD1 MUTATED        1      7      7      7      2
  NWD1 WILD-TYPE     25     72     66     75     56
D189V3, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            7             72
  CLUS_3            7             66
  CLUS_4            7             75
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NWD1 MUTATED        7      7      6      4
  NWD1 WILD-TYPE    120     44     65     65
D189V4, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            7            120
  CLUS_2            7             44
  CLUS_3            6             65
  CLUS_4            4             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NWD1 MUTATED        4      6     15      3      3
  NWD1 WILD-TYPE     80     79     70     66     44
D189V5, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            4             80
  CLUS_2            6             79
  CLUS_3           15             70
  CLUS_4            3             66
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NWD1 MUTATED        6      5      8     12
  NWD1 WILD-TYPE     89     69    113     68
D189V6, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            6             89
  CLUS_2            5             69
  CLUS_3            8            113
  CLUS_4           12             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NWD1 MUTATED        7      7      7      8      1      2
  NWD1 WILD-TYPE     45     57     65     96     39     57
D189V7, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            7             45
  CLUS_2            7             57
  CLUS_3            7             65
  CLUS_4            8             96
  CLUS_5            1             39
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NWD1 MUTATED       22      5      5
  NWD1 WILD-TYPE    195     70     94
D189V8, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1           22            195
  CLUS_2            5             70
  CLUS_3            5             94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NWD1 MUTATED        9     11      6
  NWD1 WILD-TYPE    112     97     66
D189V9, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            9            112
  CLUS_2           11             97
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NWD1 MUTATED        7      4      4      5      6
  NWD1 WILD-TYPE     81     62     41     50     41
D189V10, multiclass
        clus
vv       NWD1 MUTATED NWD1 WILD-TYPE
  CLUS_1            7             81
  CLUS_2            4             62
  CLUS_3            4             41
  CLUS_4            5             50
  CLUS_5            6             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(190) Variable = RBM6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM6 MUTATED        2     19      2      0
  RBM6 WILD-TYPE    202    118     45      3
D190V1, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            2            202
  CLUS_2           19            118
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM6 MUTATED        1     10      3      1      1
  RBM6 WILD-TYPE     38     86     41     87     79
D190V2, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            1             38
  CLUS_2           10             86
  CLUS_3            3             41
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM6 MUTATED        0      8      6      3      5
  RBM6 WILD-TYPE     26     71     67     79     53
D190V3, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            8             71
  CLUS_3            6             67
  CLUS_4            3             79
  CLUS_5            5             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM6 MUTATED        3     10      6      3
  RBM6 WILD-TYPE    124     41     65     66
D190V4, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            3            124
  CLUS_2           10             41
  CLUS_3            6             65
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM6 MUTATED        1      5     11      1      3
  RBM6 WILD-TYPE     83     80     74     68     44
D190V5, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            5             80
  CLUS_3           11             74
  CLUS_4            1             68
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM6 MUTATED        5      6      1      9
  RBM6 WILD-TYPE     90     68    120     71
D190V6, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            5             90
  CLUS_2            6             68
  CLUS_3            1            120
  CLUS_4            9             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM6 MUTATED        5      9      2      6      0      1
  RBM6 WILD-TYPE     47     55     70     98     40     58
D190V7, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            5             47
  CLUS_2            9             55
  CLUS_3            2             70
  CLUS_4            6             98
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM6 MUTATED       19      3      1
  RBM6 WILD-TYPE    198     72     98
D190V8, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1           19            198
  CLUS_2            3             72
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBM6 MUTATED        4      3      7
  RBM6 WILD-TYPE    117    105     65
D190V9, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            3            105
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM6 MUTATED        4      2      2      1      5
  RBM6 WILD-TYPE     84     64     43     54     42
D190V10, multiclass
        clus
vv       RBM6 MUTATED RBM6 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            2             64
  CLUS_3            2             43
  CLUS_4            1             54
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(191) Variable = PBRM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBRM1 MUTATED        4     17      4      0
  PBRM1 WILD-TYPE    200    120     43      3
D191V1, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            17             120
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PBRM1 MUTATED        3     12      6      1      1
  PBRM1 WILD-TYPE     36     84     38     87     79
D191V2, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             3              36
  CLUS_2            12              84
  CLUS_3             6              38
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PBRM1 MUTATED        1     10     10      2      2
  PBRM1 WILD-TYPE     25     69     63     80     56
D191V3, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2            10              69
  CLUS_3            10              63
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBRM1 MUTATED        5     11      8      1
  PBRM1 WILD-TYPE    122     40     63     68
D191V4, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             5             122
  CLUS_2            11              40
  CLUS_3             8              63
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PBRM1 MUTATED        0      4     14      3      2
  PBRM1 WILD-TYPE     84     81     71     66     45
D191V5, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             4              81
  CLUS_3            14              71
  CLUS_4             3              66
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBRM1 MUTATED        7      4      4      8
  PBRM1 WILD-TYPE     88     70    117     72
D191V6, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             4              70
  CLUS_3             4             117
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PBRM1 MUTATED        6      8      6      3      2      1
  PBRM1 WILD-TYPE     46     56     66    101     38     58
D191V7, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             8              56
  CLUS_3             6              66
  CLUS_4             3             101
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED       23      1      2
  PBRM1 WILD-TYPE    194     74     97
D191V8, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1            23             194
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PBRM1 MUTATED        8      2     10
  PBRM1 WILD-TYPE    113    106     62
D191V9, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             8             113
  CLUS_2             2             106
  CLUS_3            10              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PBRM1 MUTATED        6      1      6      0      7
  PBRM1 WILD-TYPE     82     65     39     55     40
D191V10, multiclass
        clus
vv       PBRM1 MUTATED PBRM1 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             1              65
  CLUS_3             6              39
  CLUS_4             0              55
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(192) Variable = TOP2A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP2A MUTATED        5      6      3      0
  TOP2A WILD-TYPE    199    131     44      3
D192V1, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             5             199
  CLUS_2             6             131
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOP2A MUTATED        0      2      2      4      1
  TOP2A WILD-TYPE     39     94     42     84     79
D192V2, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             0              39
  CLUS_2             2              94
  CLUS_3             2              42
  CLUS_4             4              84
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOP2A MUTATED        2      4      1      2      3
  TOP2A WILD-TYPE     24     75     72     80     55
D192V3, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             2              24
  CLUS_2             4              75
  CLUS_3             1              72
  CLUS_4             2              80
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP2A MUTATED        5      2      4      1
  TOP2A WILD-TYPE    122     49     67     68
D192V4, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             5             122
  CLUS_2             2              49
  CLUS_3             4              67
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOP2A MUTATED        2      1      5      3      1
  TOP2A WILD-TYPE     82     84     80     66     46
D192V5, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             2              82
  CLUS_2             1              84
  CLUS_3             5              80
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOP2A MUTATED        4      1      4      3
  TOP2A WILD-TYPE     91     73    117     77
D192V6, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             4             117
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TOP2A MUTATED        1      7      3      1      1      1
  TOP2A WILD-TYPE     51     57     69    103     39     58
D192V7, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             1              51
  CLUS_2             7              57
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TOP2A MUTATED        9      2      3
  TOP2A WILD-TYPE    208     73     96
D192V8, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             9             208
  CLUS_2             2              73
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TOP2A MUTATED        2      1      5
  TOP2A WILD-TYPE    119    107     67
D192V9, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOP2A MUTATED        1      0      3      2      2
  TOP2A WILD-TYPE     87     66     42     53     45
D192V10, multiclass
        clus
vv       TOP2A MUTATED TOP2A WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             2              53
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(193) Variable = KIF21A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF21A MUTATED        2     13      3      0
  KIF21A WILD-TYPE    202    124     44      3
D193V1, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              2              202
  CLUS_2             13              124
  CLUS_3              3               44
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF21A MUTATED        2      9      4      0      0
  KIF21A WILD-TYPE     37     87     40     88     80
D193V2, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              2               37
  CLUS_2              9               87
  CLUS_3              4               40
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF21A MUTATED        0      3      5      0      6
  KIF21A WILD-TYPE     26     76     68     82     52
D193V3, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              5               68
  CLUS_4              0               82
  CLUS_5              6               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF21A MUTATED        3      8      2      1
  KIF21A WILD-TYPE    124     43     69     68
D193V4, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              3              124
  CLUS_2              8               43
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF21A MUTATED        0      7      6      2      2
  KIF21A WILD-TYPE     84     78     79     67     45
D193V5, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              0               84
  CLUS_2              7               78
  CLUS_3              6               79
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF21A MUTATED        7      3      1      6
  KIF21A WILD-TYPE     88     71    120     74
D193V6, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              7               88
  CLUS_2              3               71
  CLUS_3              1              120
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIF21A MUTATED        3      6      3      3      3      0
  KIF21A WILD-TYPE     49     58     69    101     37     59
D193V7, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              3               49
  CLUS_2              6               58
  CLUS_3              3               69
  CLUS_4              3              101
  CLUS_5              3               37
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF21A MUTATED       15      2      1
  KIF21A WILD-TYPE    202     73     98
D193V8, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1             15              202
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF21A MUTATED        7      4      4
  KIF21A WILD-TYPE    114    104     68
D193V9, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              7              114
  CLUS_2              4              104
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF21A MUTATED        7      2      1      0      5
  KIF21A WILD-TYPE     81     64     44     55     42
D193V10, multiclass
        clus
vv       KIF21A MUTATED KIF21A WILD-TYPE
  CLUS_1              7               81
  CLUS_2              2               64
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(194) Variable = LTBP3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LTBP3 MUTATED        0     15      2      0
  LTBP3 WILD-TYPE    204    122     45      3
D194V1, multiclass
        clus
vv       LTBP3 MUTATED LTBP3 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            15             122
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LTBP3 MUTATED        1      9      2      0      2
  LTBP3 WILD-TYPE     38     87     42     88     78
D194V2, multiclass
        clus
vv       LTBP3 MUTATED LTBP3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             9              87
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LTBP3 MUTATED        1      3      6      1      3
  LTBP3 WILD-TYPE     25     76     67     81     55
D194V3, multiclass
        clus
vv       LTBP3 MUTATED LTBP3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             6              67
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LTBP3 MUTATED        4      4      3      3
  LTBP3 WILD-TYPE    123     47     68     66
D194V4, multiclass
        clus
vv       LTBP3 MUTATED LTBP3 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             4              47
  CLUS_3             3              68
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LTBP3 MUTATED        0      5      7      4      1
  LTBP3 WILD-TYPE     84     80     78     65     46
D194V5, multiclass
        clus
vv       LTBP3 MUTATED LTBP3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             5              80
  CLUS_3             7              78
  CLUS_4             4              65
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LTBP3 MUTATED        4      5      1      7
  LTBP3 WILD-TYPE     91     69    120     73
D194V6, multiclass
        clus
vv       LTBP3 MUTATED LTBP3 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             5              69
  CLUS_3             1             120
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LTBP3 MUTATED        3      7      3      1      3      0
  LTBP3 WILD-TYPE     49     57     69    103     37     59
D194V7, multiclass
        clus
vv       LTBP3 MUTATED LTBP3 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             7              57
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             3              37
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LTBP3 MUTATED       12      3      2
  LTBP3 WILD-TYPE    205     72     97
D194V8, multiclass
        clus
vv       LTBP3 MUTATED LTBP3 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             3              72
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LTBP3 MUTATED        6      1      4
  LTBP3 WILD-TYPE    115    107     68
D194V9, multiclass
        clus
vv       LTBP3 MUTATED LTBP3 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LTBP3 MUTATED        5      1      2      0      3
  LTBP3 WILD-TYPE     83     65     43     55     44
D194V10, multiclass
        clus
vv       LTBP3 MUTATED LTBP3 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(195) Variable = ZC3H4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H4 MUTATED        4     14      2      0
  ZC3H4 WILD-TYPE    200    123     45      3
D195V1, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            14             123
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H4 MUTATED        2     10      3      1      0
  ZC3H4 WILD-TYPE     37     86     41     87     80
D195V2, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            10              86
  CLUS_3             3              41
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H4 MUTATED        2      4      4      3      5
  ZC3H4 WILD-TYPE     24     75     69     79     53
D195V3, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             4              75
  CLUS_3             4              69
  CLUS_4             3              79
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H4 MUTATED        5      6      4      3
  ZC3H4 WILD-TYPE    122     45     67     66
D195V4, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             6              45
  CLUS_3             4              67
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H4 MUTATED        2      3      7      2      5
  ZC3H4 WILD-TYPE     82     82     78     67     42
D195V5, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             3              82
  CLUS_3             7              78
  CLUS_4             2              67
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H4 MUTATED        5      2      3      9
  ZC3H4 WILD-TYPE     90     72    118     71
D195V6, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             2              72
  CLUS_3             3             118
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H4 MUTATED        6      5      4      3      1      1
  ZC3H4 WILD-TYPE     46     59     68    101     39     58
D195V7, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             5              59
  CLUS_3             4              68
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZC3H4 MUTATED       15      3      2
  ZC3H4 WILD-TYPE    202     72     97
D195V8, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1            15             202
  CLUS_2             3              72
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZC3H4 MUTATED        6      1      8
  ZC3H4 WILD-TYPE    115    107     64
D195V9, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H4 MUTATED        4      1      4      0      6
  ZC3H4 WILD-TYPE     84     65     41     55     41
D195V10, multiclass
        clus
vv       ZC3H4 MUTATED ZC3H4 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(196) Variable = TATDN1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TATDN1 MUTATED        0      6      0      0
  TATDN1 WILD-TYPE    204    131     47      3
D196V1, multiclass
        clus
vv       TATDN1 MUTATED TATDN1 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              6              131
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TATDN1 MUTATED        0      4      1      0      1
  TATDN1 WILD-TYPE     39     92     43     88     79
D196V2, multiclass
        clus
vv       TATDN1 MUTATED TATDN1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TATDN1 MUTATED        1      0      2      1      0
  TATDN1 WILD-TYPE     25     79     71     81     58
D196V3, multiclass
        clus
vv       TATDN1 MUTATED TATDN1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               79
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TATDN1 MUTATED        2      1      0      1
  TATDN1 WILD-TYPE    125     50     71     68
D196V4, multiclass
        clus
vv       TATDN1 MUTATED TATDN1 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              1               50
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TATDN1 MUTATED        0      1      4      1      0
  TATDN1 WILD-TYPE     84     84     81     68     47
D196V5, multiclass
        clus
vv       TATDN1 MUTATED TATDN1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TATDN1 MUTATED        1      2      1      2
  TATDN1 WILD-TYPE     94     72    120     78
D196V6, multiclass
        clus
vv       TATDN1 MUTATED TATDN1 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TATDN1 MUTATED        1      2      1      1      1      0
  TATDN1 WILD-TYPE     51     62     71    103     39     59
D196V7, multiclass
        clus
vv       TATDN1 MUTATED TATDN1 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TATDN1 MUTATED        4      2      0
  TATDN1 WILD-TYPE    213     73     99
D196V8, multiclass
        clus
vv       TATDN1 MUTATED TATDN1 WILD-TYPE
  CLUS_1              4              213
  CLUS_2              2               73
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TATDN1 MUTATED        1      1      2
  TATDN1 WILD-TYPE    120    107     70
D196V9, multiclass
        clus
vv       TATDN1 MUTATED TATDN1 WILD-TYPE
  CLUS_1              1              120
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TATDN1 MUTATED        2      1      1      0      0
  TATDN1 WILD-TYPE     86     65     44     55     47
D196V10, multiclass
        clus
vv       TATDN1 MUTATED TATDN1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(197) Variable = PPIP5K2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIP5K2 MUTATED        3      9      2      0
  PPIP5K2 WILD-TYPE    201    128     45      3
D197V1, multiclass
        clus
vv       PPIP5K2 MUTATED PPIP5K2 WILD-TYPE
  CLUS_1               3               201
  CLUS_2               9               128
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIP5K2 MUTATED        0      2      2      1      2
  PPIP5K2 WILD-TYPE     39     94     42     87     78
D197V2, multiclass
        clus
vv       PPIP5K2 MUTATED PPIP5K2 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               2                94
  CLUS_3               2                42
  CLUS_4               1                87
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIP5K2 MUTATED        1      4      4      2      3
  PPIP5K2 WILD-TYPE     25     75     69     80     55
D197V3, multiclass
        clus
vv       PPIP5K2 MUTATED PPIP5K2 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               4                75
  CLUS_3               4                69
  CLUS_4               2                80
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIP5K2 MUTATED        6      6      0      2
  PPIP5K2 WILD-TYPE    121     45     71     67
D197V4, multiclass
        clus
vv       PPIP5K2 MUTATED PPIP5K2 WILD-TYPE
  CLUS_1               6               121
  CLUS_2               6                45
  CLUS_3               0                71
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIP5K2 MUTATED        2      4      4      0      2
  PPIP5K2 WILD-TYPE     82     81     81     69     45
D197V5, multiclass
        clus
vv       PPIP5K2 MUTATED PPIP5K2 WILD-TYPE
  CLUS_1               2                82
  CLUS_2               4                81
  CLUS_3               4                81
  CLUS_4               0                69
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIP5K2 MUTATED        1      3      4      4
  PPIP5K2 WILD-TYPE     94     71    117     76
D197V6, multiclass
        clus
vv       PPIP5K2 MUTATED PPIP5K2 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               3                71
  CLUS_3               4               117
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPIP5K2 MUTATED        2      8      1      0      1      2
  PPIP5K2 WILD-TYPE     50     56     71    104     39     57
D197V7, multiclass
        clus
vv       PPIP5K2 MUTATED PPIP5K2 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               8                56
  CLUS_3               1                71
  CLUS_4               0               104
  CLUS_5               1                39
  CLUS_6               2                57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPIP5K2 MUTATED       12      0      2
  PPIP5K2 WILD-TYPE    205     75     97
D197V8, multiclass
        clus
vv       PPIP5K2 MUTATED PPIP5K2 WILD-TYPE
  CLUS_1              12               205
  CLUS_2               0                75
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPIP5K2 MUTATED        2      1      4
  PPIP5K2 WILD-TYPE    119    107     68
D197V9, multiclass
        clus
vv       PPIP5K2 MUTATED PPIP5K2 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               1               107
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIP5K2 MUTATED        1      1      2      1      2
  PPIP5K2 WILD-TYPE     87     65     43     54     45
D197V10, multiclass
        clus
vv       PPIP5K2 MUTATED PPIP5K2 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               1                54
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(198) Variable = C5ORF42 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF42 MUTATED        6     20      3      1
  C5ORF42 WILD-TYPE    198    117     44      2
D198V1, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               6               198
  CLUS_2              20               117
  CLUS_3               3                44
  CLUS_4               1                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C5ORF42 MUTATED        2     20      2      2      1
  C5ORF42 WILD-TYPE     37     76     42     86     79
D198V2, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               2                37
  CLUS_2              20                76
  CLUS_3               2                42
  CLUS_4               2                86
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C5ORF42 MUTATED        0     12      5      2      4
  C5ORF42 WILD-TYPE     26     67     68     80     54
D198V3, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               0                26
  CLUS_2              12                67
  CLUS_3               5                68
  CLUS_4               2                80
  CLUS_5               4                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF42 MUTATED        1     14      6      2
  C5ORF42 WILD-TYPE    126     37     65     67
D198V4, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               1               126
  CLUS_2              14                37
  CLUS_3               6                65
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C5ORF42 MUTATED        2      2     19      2      5
  C5ORF42 WILD-TYPE     82     83     66     67     42
D198V5, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               2                82
  CLUS_2               2                83
  CLUS_3              19                66
  CLUS_4               2                67
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C5ORF42 MUTATED        7      2      6     15
  C5ORF42 WILD-TYPE     88     72    115     65
D198V6, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               7                88
  CLUS_2               2                72
  CLUS_3               6               115
  CLUS_4              15                65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C5ORF42 MUTATED        9      7      8      3      3      1
  C5ORF42 WILD-TYPE     43     57     64    101     37     58
D198V7, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1               9                43
  CLUS_2               7                57
  CLUS_3               8                64
  CLUS_4               3               101
  CLUS_5               3                37
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF42 MUTATED       27      1      3
  C5ORF42 WILD-TYPE    190     74     96
D198V8, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1              27               190
  CLUS_2               1                74
  CLUS_3               3                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C5ORF42 MUTATED       11      6      5
  C5ORF42 WILD-TYPE    110    102     67
D198V9, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1              11               110
  CLUS_2               6               102
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C5ORF42 MUTATED       10      1      2      1      8
  C5ORF42 WILD-TYPE     78     65     43     54     39
D198V10, multiclass
        clus
vv       C5ORF42 MUTATED C5ORF42 WILD-TYPE
  CLUS_1              10                78
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               1                54
  CLUS_5               8                39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(199) Variable = C13ORF33 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF33 MUTATED        1      5      1      0
  C13ORF33 WILD-TYPE    203    132     46      3
D199V1, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                5                132
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C13ORF33 MUTATED        0      6      1      0      0
  C13ORF33 WILD-TYPE     39     90     43     88     80
D199V2, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                6                 90
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C13ORF33 MUTATED        0      3      2      0      1
  C13ORF33 WILD-TYPE     26     76     71     82     57
D199V3, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                3                 76
  CLUS_3                2                 71
  CLUS_4                0                 82
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF33 MUTATED        0      4      2      0
  C13ORF33 WILD-TYPE    127     47     69     69
D199V4, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                0                127
  CLUS_2                4                 47
  CLUS_3                2                 69
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C13ORF33 MUTATED        0      1      5      0      1
  C13ORF33 WILD-TYPE     84     84     80     69     46
D199V5, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                5                 80
  CLUS_4                0                 69
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF33 MUTATED        0      1      0      6
  C13ORF33 WILD-TYPE     95     73    121     74
D199V6, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                0                 95
  CLUS_2                1                 73
  CLUS_3                0                121
  CLUS_4                6                 74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C13ORF33 MUTATED        1      1      2      3      0      0
  C13ORF33 WILD-TYPE     51     63     70    101     40     59
D199V7, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                1                 63
  CLUS_3                2                 70
  CLUS_4                3                101
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        6      1      0
  C13ORF33 WILD-TYPE    211     74     99
D199V8, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                6                211
  CLUS_2                1                 74
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF33 MUTATED        4      2      0
  C13ORF33 WILD-TYPE    117    106     72
D199V9, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                2                106
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C13ORF33 MUTATED        3      1      0      0      2
  C13ORF33 WILD-TYPE     85     65     45     55     45
D199V10, multiclass
        clus
vv       C13ORF33 MUTATED C13ORF33 WILD-TYPE
  CLUS_1                3                 85
  CLUS_2                1                 65
  CLUS_3                0                 45
  CLUS_4                0                 55
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(200) Variable = COIL MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COIL MUTATED        1      7      2      0
  COIL WILD-TYPE    203    130     45      3
D200V1, multiclass
        clus
vv       COIL MUTATED COIL WILD-TYPE
  CLUS_1            1            203
  CLUS_2            7            130
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COIL MUTATED        2      4      3      0      0
  COIL WILD-TYPE     37     92     41     88     80
D200V2, multiclass
        clus
vv       COIL MUTATED COIL WILD-TYPE
  CLUS_1            2             37
  CLUS_2            4             92
  CLUS_3            3             41
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COIL MUTATED        0      3      3      0      2
  COIL WILD-TYPE     26     76     70     82     56
D200V3, multiclass
        clus
vv       COIL MUTATED COIL WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COIL MUTATED        0      6      0      2
  COIL WILD-TYPE    127     45     71     67
D200V4, multiclass
        clus
vv       COIL MUTATED COIL WILD-TYPE
  CLUS_1            0            127
  CLUS_2            6             45
  CLUS_3            0             71
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COIL MUTATED        0      2      6      1      1
  COIL WILD-TYPE     84     83     79     68     46
D200V5, multiclass
        clus
vv       COIL MUTATED COIL WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            6             79
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COIL MUTATED        2      3      0      5
  COIL WILD-TYPE     93     71    121     75
D200V6, multiclass
        clus
vv       COIL MUTATED COIL WILD-TYPE
  CLUS_1            2             93
  CLUS_2            3             71
  CLUS_3            0            121
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COIL MUTATED        4      4      0      0      2      0
  COIL WILD-TYPE     48     60     72    104     38     59
D200V7, multiclass
        clus
vv       COIL MUTATED COIL WILD-TYPE
  CLUS_1            4             48
  CLUS_2            4             60
  CLUS_3            0             72
  CLUS_4            0            104
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COIL MUTATED        9      0      1
  COIL WILD-TYPE    208     75     98
D200V8, multiclass
        clus
vv       COIL MUTATED COIL WILD-TYPE
  CLUS_1            9            208
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  COIL MUTATED        6      0      2
  COIL WILD-TYPE    115    108     70
D200V9, multiclass
        clus
vv       COIL MUTATED COIL WILD-TYPE
  CLUS_1            6            115
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COIL MUTATED        4      0      1      0      3
  COIL WILD-TYPE     84     66     44     55     44
D200V10, multiclass
        clus
vv       COIL MUTATED COIL WILD-TYPE
  CLUS_1            4             84
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(201) Variable = TP53BP2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53BP2 MUTATED        2      9      2      0
  TP53BP2 WILD-TYPE    202    128     45      3
D201V1, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               9               128
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53BP2 MUTATED        2      7      2      1      0
  TP53BP2 WILD-TYPE     37     89     42     87     80
D201V2, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               2                37
  CLUS_2               7                89
  CLUS_3               2                42
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53BP2 MUTATED        0      3      5      2      3
  TP53BP2 WILD-TYPE     26     76     68     80     55
D201V3, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               3                76
  CLUS_3               5                68
  CLUS_4               2                80
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53BP2 MUTATED        3      6      3      1
  TP53BP2 WILD-TYPE    124     45     68     68
D201V4, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               6                45
  CLUS_3               3                68
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53BP2 MUTATED        1      1      8      1      2
  TP53BP2 WILD-TYPE     83     84     77     68     45
D201V5, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               8                77
  CLUS_4               1                68
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53BP2 MUTATED        3      1      2      7
  TP53BP2 WILD-TYPE     92     73    119     73
D201V6, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               1                73
  CLUS_3               2               119
  CLUS_4               7                73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53BP2 MUTATED        6      3      1      2      2      0
  TP53BP2 WILD-TYPE     46     61     71    102     38     59
D201V7, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               6                46
  CLUS_2               3                61
  CLUS_3               1                71
  CLUS_4               2               102
  CLUS_5               2                38
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TP53BP2 MUTATED       11      2      1
  TP53BP2 WILD-TYPE    206     73     98
D201V8, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1              11               206
  CLUS_2               2                73
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TP53BP2 MUTATED        4      2      3
  TP53BP2 WILD-TYPE    117    106     69
D201V9, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               2               106
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53BP2 MUTATED        3      2      1      0      3
  TP53BP2 WILD-TYPE     85     64     44     55     44
D201V10, multiclass
        clus
vv       TP53BP2 MUTATED TP53BP2 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               2                64
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(202) Variable = TGFBR2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        4     12      0      0
  TGFBR2 WILD-TYPE    200    125     47      3
D202V1, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              4              200
  CLUS_2             12              125
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR2 MUTATED        1      5      1      1      5
  TGFBR2 WILD-TYPE     38     91     43     87     75
D202V2, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              5               75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR2 MUTATED        3      0      3      3      3
  TGFBR2 WILD-TYPE     23     79     70     79     55
D202V3, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              3               23
  CLUS_2              0               79
  CLUS_3              3               70
  CLUS_4              3               79
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        8      2      0      2
  TGFBR2 WILD-TYPE    119     49     71     67
D202V4, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              8              119
  CLUS_2              2               49
  CLUS_3              0               71
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR2 MUTATED        2      7      3      2      1
  TGFBR2 WILD-TYPE     82     78     82     67     46
D202V5, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              7               78
  CLUS_3              3               82
  CLUS_4              2               67
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TGFBR2 MUTATED        5      4      3      3
  TGFBR2 WILD-TYPE     90     70    118     77
D202V6, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              5               90
  CLUS_2              4               70
  CLUS_3              3              118
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TGFBR2 MUTATED        2      5      2      5      1      1
  TGFBR2 WILD-TYPE     50     59     70     99     39     58
D202V7, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              5               59
  CLUS_3              2               70
  CLUS_4              5               99
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        9      5      2
  TGFBR2 WILD-TYPE    208     70     97
D202V8, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              5               70
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TGFBR2 MUTATED        4      6      2
  TGFBR2 WILD-TYPE    117    102     70
D202V9, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              6              102
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TGFBR2 MUTATED        5      4      2      0      1
  TGFBR2 WILD-TYPE     83     62     43     55     46
D202V10, multiclass
        clus
vv       TGFBR2 MUTATED TGFBR2 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              4               62
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(203) Variable = FBXO21 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO21 MUTATED        4     11      0      0
  FBXO21 WILD-TYPE    200    126     47      3
D203V1, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              4              200
  CLUS_2             11              126
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO21 MUTATED        0      4      0      2      2
  FBXO21 WILD-TYPE     39     92     44     86     78
D203V2, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              0               44
  CLUS_4              2               86
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO21 MUTATED        1      5      2      3      2
  FBXO21 WILD-TYPE     25     74     71     79     56
D203V3, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              5               74
  CLUS_3              2               71
  CLUS_4              3               79
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO21 MUTATED        2      6      2      3
  FBXO21 WILD-TYPE    125     45     69     66
D203V4, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              6               45
  CLUS_3              2               69
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO21 MUTATED        1      4      8      1      0
  FBXO21 WILD-TYPE     83     81     77     68     47
D203V5, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              4               81
  CLUS_3              8               77
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO21 MUTATED        4      5      0      5
  FBXO21 WILD-TYPE     91     69    121     75
D203V6, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              5               69
  CLUS_3              0              121
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXO21 MUTATED        0      6      1      6      1      1
  FBXO21 WILD-TYPE     52     58     71     98     39     58
D203V7, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              6               58
  CLUS_3              1               71
  CLUS_4              6               98
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO21 MUTATED       10      2      3
  FBXO21 WILD-TYPE    207     73     96
D203V8, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1             10              207
  CLUS_2              2               73
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO21 MUTATED        3      4      1
  FBXO21 WILD-TYPE    118    104     71
D203V9, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              4              104
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO21 MUTATED        2      2      1      1      2
  FBXO21 WILD-TYPE     86     64     44     54     45
D203V10, multiclass
        clus
vv       FBXO21 MUTATED FBXO21 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              2               64
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(204) Variable = CASP7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP7 MUTATED        1      3      0      0
  CASP7 WILD-TYPE    203    134     47      3
D204V1, multiclass
        clus
vv       CASP7 MUTATED CASP7 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             3             134
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP7 MUTATED        0      3      1      0      0
  CASP7 WILD-TYPE     39     93     43     88     80
D204V2, multiclass
        clus
vv       CASP7 MUTATED CASP7 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP7 MUTATED        1      1      1      0      1
  CASP7 WILD-TYPE     25     78     72     82     57
D204V3, multiclass
        clus
vv       CASP7 MUTATED CASP7 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP7 MUTATED        1      2      0      1
  CASP7 WILD-TYPE    126     49     71     68
D204V4, multiclass
        clus
vv       CASP7 MUTATED CASP7 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             2              49
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP7 MUTATED        0      1      2      1      0
  CASP7 WILD-TYPE     84     84     83     68     47
D204V5, multiclass
        clus
vv       CASP7 MUTATED CASP7 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             2              83
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASP7 MUTATED        1      1      0      2
  CASP7 WILD-TYPE     94     73    121     78
D204V6, multiclass
        clus
vv       CASP7 MUTATED CASP7 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASP7 MUTATED        1      2      1      0      0      0
  CASP7 WILD-TYPE     51     62     71    104     40     59
D204V7, multiclass
        clus
vv       CASP7 MUTATED CASP7 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP7 MUTATED        4      0      0
  CASP7 WILD-TYPE    213     75     99
D204V8, multiclass
        clus
vv       CASP7 MUTATED CASP7 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASP7 MUTATED        2      0      2
  CASP7 WILD-TYPE    119    108     70
D204V9, multiclass
        clus
vv       CASP7 MUTATED CASP7 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASP7 MUTATED        1      0      1      0      2
  CASP7 WILD-TYPE     87     66     44     55     45
D204V10, multiclass
        clus
vv       CASP7 MUTATED CASP7 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(205) Variable = TMEM41B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41B MUTATED        0      5      0      0
  TMEM41B WILD-TYPE    204    132     47      3
D205V1, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               0               204
  CLUS_2               5               132
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41B MUTATED        0      3      0      0      0
  TMEM41B WILD-TYPE     39     93     44     88     80
D205V2, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41B MUTATED        0      2      1      0      1
  TMEM41B WILD-TYPE     26     77     72     82     57
D205V3, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               1                72
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41B MUTATED        0      3      1      0
  TMEM41B WILD-TYPE    127     48     70     69
D205V4, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               0               127
  CLUS_2               3                48
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41B MUTATED        0      1      1      0      2
  TMEM41B WILD-TYPE     84     84     84     69     45
D205V5, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               1                84
  CLUS_4               0                69
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM41B MUTATED        1      1      0      2
  TMEM41B WILD-TYPE     94     73    121     78
D205V6, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM41B MUTATED        2      2      0      0      1      0
  TMEM41B WILD-TYPE     50     62     72    104     39     59
D205V7, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               2                50
  CLUS_2               2                62
  CLUS_3               0                72
  CLUS_4               0               104
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41B MUTATED        4      0      1
  TMEM41B WILD-TYPE    213     75     98
D205V8, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               4               213
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM41B MUTATED        1      1      1
  TMEM41B WILD-TYPE    120    107     71
D205V9, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               1               120
  CLUS_2               1               107
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM41B MUTATED        1      0      0      0      2
  TMEM41B WILD-TYPE     87     66     45     55     45
D205V10, multiclass
        clus
vv       TMEM41B MUTATED TMEM41B WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(206) Variable = ORC3L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ORC3L MUTATED        3      9      0      0
  ORC3L WILD-TYPE    201    128     47      3
D206V1, multiclass
        clus
vv       ORC3L MUTATED ORC3L WILD-TYPE
  CLUS_1             3             201
  CLUS_2             9             128
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ORC3L MUTATED        0      6      0      0      1
  ORC3L WILD-TYPE     39     90     44     88     79
D206V2, multiclass
        clus
vv       ORC3L MUTATED ORC3L WILD-TYPE
  CLUS_1             0              39
  CLUS_2             6              90
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ORC3L MUTATED        0      4      2      1      3
  ORC3L WILD-TYPE     26     75     71     81     55
D206V3, multiclass
        clus
vv       ORC3L MUTATED ORC3L WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ORC3L MUTATED        0      7      1      2
  ORC3L WILD-TYPE    127     44     70     67
D206V4, multiclass
        clus
vv       ORC3L MUTATED ORC3L WILD-TYPE
  CLUS_1             0             127
  CLUS_2             7              44
  CLUS_3             1              70
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ORC3L MUTATED        0      1      5      3      1
  ORC3L WILD-TYPE     84     84     80     66     46
D206V5, multiclass
        clus
vv       ORC3L MUTATED ORC3L WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             5              80
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ORC3L MUTATED        5      1      0      4
  ORC3L WILD-TYPE     90     73    121     76
D206V6, multiclass
        clus
vv       ORC3L MUTATED ORC3L WILD-TYPE
  CLUS_1             5              90
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ORC3L MUTATED        1      5      1      3      2      0
  ORC3L WILD-TYPE     51     59     71    101     38     59
D206V7, multiclass
        clus
vv       ORC3L MUTATED ORC3L WILD-TYPE
  CLUS_1             1              51
  CLUS_2             5              59
  CLUS_3             1              71
  CLUS_4             3             101
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ORC3L MUTATED       11      1      0
  ORC3L WILD-TYPE    206     74     99
D206V8, multiclass
        clus
vv       ORC3L MUTATED ORC3L WILD-TYPE
  CLUS_1            11             206
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ORC3L MUTATED        2      2      2
  ORC3L WILD-TYPE    119    106     70
D206V9, multiclass
        clus
vv       ORC3L MUTATED ORC3L WILD-TYPE
  CLUS_1             2             119
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ORC3L MUTATED        3      0      1      0      2
  ORC3L WILD-TYPE     85     66     44     55     45
D206V10, multiclass
        clus
vv       ORC3L MUTATED ORC3L WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(207) Variable = CBWD6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBWD6 MUTATED        0      6      1      0
  CBWD6 WILD-TYPE    204    131     46      3
D207V1, multiclass
        clus
vv       CBWD6 MUTATED CBWD6 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             6             131
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBWD6 MUTATED        1      5      0      0      0
  CBWD6 WILD-TYPE     38     91     44     88     80
D207V2, multiclass
        clus
vv       CBWD6 MUTATED CBWD6 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBWD6 MUTATED        0      1      1      0      3
  CBWD6 WILD-TYPE     26     78     72     82     55
D207V3, multiclass
        clus
vv       CBWD6 MUTATED CBWD6 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBWD6 MUTATED        0      5      0      0
  CBWD6 WILD-TYPE    127     46     71     69
D207V4, multiclass
        clus
vv       CBWD6 MUTATED CBWD6 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             5              46
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBWD6 MUTATED        0      0      3      3      1
  CBWD6 WILD-TYPE     84     85     82     66     46
D207V5, multiclass
        clus
vv       CBWD6 MUTATED CBWD6 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBWD6 MUTATED        3      0      0      4
  CBWD6 WILD-TYPE     92     74    121     76
D207V6, multiclass
        clus
vv       CBWD6 MUTATED CBWD6 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CBWD6 MUTATED        5      1      1      0      0      0
  CBWD6 WILD-TYPE     47     63     71    104     40     59
D207V7, multiclass
        clus
vv       CBWD6 MUTATED CBWD6 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             1              63
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD6 MUTATED        6      0      1
  CBWD6 WILD-TYPE    211     75     98
D207V8, multiclass
        clus
vv       CBWD6 MUTATED CBWD6 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBWD6 MUTATED        4      0      1
  CBWD6 WILD-TYPE    117    108     71
D207V9, multiclass
        clus
vv       CBWD6 MUTATED CBWD6 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             0             108
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBWD6 MUTATED        1      0      0      0      4
  CBWD6 WILD-TYPE     87     66     45     55     43
D207V10, multiclass
        clus
vv       CBWD6 MUTATED CBWD6 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(208) Variable = PRKAB1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKAB1 MUTATED        4      6      0      0
  PRKAB1 WILD-TYPE    200    131     47      3
D208V1, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              4              200
  CLUS_2              6              131
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKAB1 MUTATED        0      4      1      3      1
  PRKAB1 WILD-TYPE     39     92     43     85     79
D208V2, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              3               85
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKAB1 MUTATED        0      3      3      2      1
  PRKAB1 WILD-TYPE     26     76     70     80     57
D208V3, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              3               70
  CLUS_4              2               80
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKAB1 MUTATED        2      2      3      2
  PRKAB1 WILD-TYPE    125     49     68     67
D208V4, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              2               49
  CLUS_3              3               68
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKAB1 MUTATED        3      2      3      1      0
  PRKAB1 WILD-TYPE     81     83     82     68     47
D208V5, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              3               81
  CLUS_2              2               83
  CLUS_3              3               82
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRKAB1 MUTATED        1      2      4      2
  PRKAB1 WILD-TYPE     94     72    117     78
D208V6, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              4              117
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRKAB1 MUTATED        1      2      0      3      2      2
  PRKAB1 WILD-TYPE     51     62     72    101     38     57
D208V7, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              3              101
  CLUS_5              2               38
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRKAB1 MUTATED        6      1      3
  PRKAB1 WILD-TYPE    211     74     96
D208V8, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              1               74
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRKAB1 MUTATED        5      3      1
  PRKAB1 WILD-TYPE    116    105     71
D208V9, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              3              105
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRKAB1 MUTATED        3      1      1      3      1
  PRKAB1 WILD-TYPE     85     65     44     52     46
D208V10, multiclass
        clus
vv       PRKAB1 MUTATED PRKAB1 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              3               52
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(209) Variable = RABGAP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RABGAP1 MUTATED        2     17      2      0
  RABGAP1 WILD-TYPE    202    120     45      3
D209V1, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1               2               202
  CLUS_2              17               120
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RABGAP1 MUTATED        2     14      3      0      0
  RABGAP1 WILD-TYPE     37     82     41     88     80
D209V2, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1               2                37
  CLUS_2              14                82
  CLUS_3               3                41
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RABGAP1 MUTATED        0      9      5      0      4
  RABGAP1 WILD-TYPE     26     70     68     82     54
D209V3, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               9                70
  CLUS_3               5                68
  CLUS_4               0                82
  CLUS_5               4                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RABGAP1 MUTATED        4     10      4      0
  RABGAP1 WILD-TYPE    123     41     67     69
D209V4, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1               4               123
  CLUS_2              10                41
  CLUS_3               4                67
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RABGAP1 MUTATED        0      2     12      0      5
  RABGAP1 WILD-TYPE     84     83     73     69     42
D209V5, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3              12                73
  CLUS_4               0                69
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RABGAP1 MUTATED        4      1      0     14
  RABGAP1 WILD-TYPE     91     73    121     66
D209V6, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4              14                66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RABGAP1 MUTATED        7      6      5      4      0      0
  RABGAP1 WILD-TYPE     45     58     67    100     40     59
D209V7, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1               7                45
  CLUS_2               6                58
  CLUS_3               5                67
  CLUS_4               4               100
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RABGAP1 MUTATED       20      2      0
  RABGAP1 WILD-TYPE    197     73     99
D209V8, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1              20               197
  CLUS_2               2                73
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RABGAP1 MUTATED       10      2      5
  RABGAP1 WILD-TYPE    111    106     67
D209V9, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1              10               111
  CLUS_2               2               106
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RABGAP1 MUTATED        5      2      2      0      8
  RABGAP1 WILD-TYPE     83     64     43     55     39
D209V10, multiclass
        clus
vv       RABGAP1 MUTATED RABGAP1 WILD-TYPE
  CLUS_1               5                83
  CLUS_2               2                64
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               8                39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(210) Variable = SRCIN1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRCIN1 MUTATED        4      8      2      0
  SRCIN1 WILD-TYPE    200    129     45      3
D210V1, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              4              200
  CLUS_2              8              129
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRCIN1 MUTATED        0      5      2      2      2
  SRCIN1 WILD-TYPE     39     91     42     86     78
D210V2, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              2               42
  CLUS_4              2               86
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRCIN1 MUTATED        1      6      2      0      2
  SRCIN1 WILD-TYPE     25     73     71     82     56
D210V3, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              6               73
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRCIN1 MUTATED        2      5      3      1
  SRCIN1 WILD-TYPE    125     46     68     68
D210V4, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              5               46
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRCIN1 MUTATED        2      2      5      2      2
  SRCIN1 WILD-TYPE     82     83     80     67     45
D210V5, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              2               83
  CLUS_3              5               80
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRCIN1 MUTATED        3      2      2      6
  SRCIN1 WILD-TYPE     92     72    119     74
D210V6, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              2               72
  CLUS_3              2              119
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SRCIN1 MUTATED        2      5      3      2      0      2
  SRCIN1 WILD-TYPE     50     59     69    102     40     57
D210V7, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              5               59
  CLUS_3              3               69
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRCIN1 MUTATED        9      2      3
  SRCIN1 WILD-TYPE    208     73     96
D210V8, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              2               73
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SRCIN1 MUTATED        4      2      5
  SRCIN1 WILD-TYPE    117    106     67
D210V9, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              2              106
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRCIN1 MUTATED        3      1      2      1      4
  SRCIN1 WILD-TYPE     85     65     43     54     43
D210V10, multiclass
        clus
vv       SRCIN1 MUTATED SRCIN1 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(211) Variable = NIN MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIN MUTATED        7     13      3      0
  NIN WILD-TYPE    197    124     44      3
D211V1, multiclass
        clus
vv       NIN MUTATED NIN WILD-TYPE
  CLUS_1           7           197
  CLUS_2          13           124
  CLUS_3           3            44
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NIN MUTATED        3     10      2      2      2
  NIN WILD-TYPE     36     86     42     86     78
D211V2, multiclass
        clus
vv       NIN MUTATED NIN WILD-TYPE
  CLUS_1           3            36
  CLUS_2          10            86
  CLUS_3           2            42
  CLUS_4           2            86
  CLUS_5           2            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NIN MUTATED        0      9      5      1      3
  NIN WILD-TYPE     26     70     68     81     55
D211V3, multiclass
        clus
vv       NIN MUTATED NIN WILD-TYPE
  CLUS_1           0            26
  CLUS_2           9            70
  CLUS_3           5            68
  CLUS_4           1            81
  CLUS_5           3            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIN MUTATED        6      7      3      2
  NIN WILD-TYPE    121     44     68     67
D211V4, multiclass
        clus
vv       NIN MUTATED NIN WILD-TYPE
  CLUS_1           6           121
  CLUS_2           7            44
  CLUS_3           3            68
  CLUS_4           2            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NIN MUTATED        3      3     11      3      2
  NIN WILD-TYPE     81     82     74     66     45
D211V5, multiclass
        clus
vv       NIN MUTATED NIN WILD-TYPE
  CLUS_1           3            81
  CLUS_2           3            82
  CLUS_3          11            74
  CLUS_4           3            66
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NIN MUTATED        8      1      5      8
  NIN WILD-TYPE     87     73    116     72
D211V6, multiclass
        clus
vv       NIN MUTATED NIN WILD-TYPE
  CLUS_1           8            87
  CLUS_2           1            73
  CLUS_3           5           116
  CLUS_4           8            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NIN MUTATED        7      6      6      2      2      0
  NIN WILD-TYPE     45     58     66    102     38     59
D211V7, multiclass
        clus
vv       NIN MUTATED NIN WILD-TYPE
  CLUS_1           7            45
  CLUS_2           6            58
  CLUS_3           6            66
  CLUS_4           2           102
  CLUS_5           2            38
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NIN MUTATED       20      2      1
  NIN WILD-TYPE    197     73     98
D211V8, multiclass
        clus
vv       NIN MUTATED NIN WILD-TYPE
  CLUS_1          20           197
  CLUS_2           2            73
  CLUS_3           1            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NIN MUTATED       11      3      3
  NIN WILD-TYPE    110    105     69
D211V9, multiclass
        clus
vv       NIN MUTATED NIN WILD-TYPE
  CLUS_1          11           110
  CLUS_2           3           105
  CLUS_3           3            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NIN MUTATED        7      2      1      0      7
  NIN WILD-TYPE     81     64     44     55     40
D211V10, multiclass
        clus
vv       NIN MUTATED NIN WILD-TYPE
  CLUS_1           7            81
  CLUS_2           2            64
  CLUS_3           1            44
  CLUS_4           0            55
  CLUS_5           7            40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(212) Variable = PET112L MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PET112L MUTATED        0      7      1      0
  PET112L WILD-TYPE    204    130     46      3
D212V1, multiclass
        clus
vv       PET112L MUTATED PET112L WILD-TYPE
  CLUS_1               0               204
  CLUS_2               7               130
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PET112L MUTATED        1      3      1      0      1
  PET112L WILD-TYPE     38     93     43     88     79
D212V2, multiclass
        clus
vv       PET112L MUTATED PET112L WILD-TYPE
  CLUS_1               1                38
  CLUS_2               3                93
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PET112L MUTATED        1      3      2      0      1
  PET112L WILD-TYPE     25     76     71     82     57
D212V3, multiclass
        clus
vv       PET112L MUTATED PET112L WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                76
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PET112L MUTATED        2      2      2      1
  PET112L WILD-TYPE    125     49     69     68
D212V4, multiclass
        clus
vv       PET112L MUTATED PET112L WILD-TYPE
  CLUS_1               2               125
  CLUS_2               2                49
  CLUS_3               2                69
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PET112L MUTATED        1      1      5      0      0
  PET112L WILD-TYPE     83     84     80     69     47
D212V5, multiclass
        clus
vv       PET112L MUTATED PET112L WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               5                80
  CLUS_4               0                69
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PET112L MUTATED        1      1      2      3
  PET112L WILD-TYPE     94     73    119     77
D212V6, multiclass
        clus
vv       PET112L MUTATED PET112L WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               2               119
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PET112L MUTATED        2      3      1      0      1      1
  PET112L WILD-TYPE     50     61     71    104     39     58
D212V7, multiclass
        clus
vv       PET112L MUTATED PET112L WILD-TYPE
  CLUS_1               2                50
  CLUS_2               3                61
  CLUS_3               1                71
  CLUS_4               0               104
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PET112L MUTATED        5      1      2
  PET112L WILD-TYPE    212     74     97
D212V8, multiclass
        clus
vv       PET112L MUTATED PET112L WILD-TYPE
  CLUS_1               5               212
  CLUS_2               1                74
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PET112L MUTATED        2      1      3
  PET112L WILD-TYPE    119    107     69
D212V9, multiclass
        clus
vv       PET112L MUTATED PET112L WILD-TYPE
  CLUS_1               2               119
  CLUS_2               1               107
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PET112L MUTATED        3      0      2      0      1
  PET112L WILD-TYPE     85     66     43     55     46
D212V10, multiclass
        clus
vv       PET112L MUTATED PET112L WILD-TYPE
  CLUS_1               3                85
  CLUS_2               0                66
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(213) Variable = ZKSCAN5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN5 MUTATED        2      8      1      0
  ZKSCAN5 WILD-TYPE    202    129     46      3
D213V1, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               8               129
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZKSCAN5 MUTATED        2      3      3      0      2
  ZKSCAN5 WILD-TYPE     37     93     41     88     78
D213V2, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               2                37
  CLUS_2               3                93
  CLUS_3               3                41
  CLUS_4               0                88
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZKSCAN5 MUTATED        1      5      3      0      0
  ZKSCAN5 WILD-TYPE     25     74     70     82     58
D213V3, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               5                74
  CLUS_3               3                70
  CLUS_4               0                82
  CLUS_5               0                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN5 MUTATED        3      4      2      0
  ZKSCAN5 WILD-TYPE    124     47     69     69
D213V4, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               4                47
  CLUS_3               2                69
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZKSCAN5 MUTATED        0      1      6      3      1
  ZKSCAN5 WILD-TYPE     84     84     79     66     46
D213V5, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               6                79
  CLUS_4               3                66
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZKSCAN5 MUTATED        5      1      1      4
  ZKSCAN5 WILD-TYPE     90     73    120     76
D213V6, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               5                90
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZKSCAN5 MUTATED        2      6      0      2      1      0
  ZKSCAN5 WILD-TYPE     50     58     72    102     39     59
D213V7, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               6                58
  CLUS_3               0                72
  CLUS_4               2               102
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZKSCAN5 MUTATED       10      0      1
  ZKSCAN5 WILD-TYPE    207     75     98
D213V8, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1              10               207
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZKSCAN5 MUTATED        4      2      4
  ZKSCAN5 WILD-TYPE    117    106     68
D213V9, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               2               106
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZKSCAN5 MUTATED        2      0      3      1      4
  ZKSCAN5 WILD-TYPE     86     66     42     54     43
D213V10, multiclass
        clus
vv       ZKSCAN5 MUTATED ZKSCAN5 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               3                42
  CLUS_4               1                54
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(214) Variable = CTSC MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSC MUTATED        0     11      0      0
  CTSC WILD-TYPE    204    126     47      3
D214V1, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            0            204
  CLUS_2           11            126
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSC MUTATED        0      6      1      0      0
  CTSC WILD-TYPE     39     90     43     88     80
D214V2, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            0             39
  CLUS_2            6             90
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSC MUTATED        0      1      2      1      3
  CTSC WILD-TYPE     26     78     71     81     55
D214V3, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSC MUTATED        1      4      1      1
  CTSC WILD-TYPE    126     47     70     68
D214V4, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            1            126
  CLUS_2            4             47
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSC MUTATED        0      4      5      1      1
  CTSC WILD-TYPE     84     81     80     68     46
D214V5, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            0             84
  CLUS_2            4             81
  CLUS_3            5             80
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSC MUTATED        2      3      0      6
  CTSC WILD-TYPE     93     71    121     74
D214V6, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            2             93
  CLUS_2            3             71
  CLUS_3            0            121
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTSC MUTATED        2      4      1      3      1      0
  CTSC WILD-TYPE     50     60     71    101     39     59
D214V7, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            2             50
  CLUS_2            4             60
  CLUS_3            1             71
  CLUS_4            3            101
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSC MUTATED        8      2      1
  CTSC WILD-TYPE    209     73     98
D214V8, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            8            209
  CLUS_2            2             73
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSC MUTATED        5      2      0
  CTSC WILD-TYPE    116    106     72
D214V9, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            5            116
  CLUS_2            2            106
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSC MUTATED        4      1      0      0      2
  CTSC WILD-TYPE     84     65     45     55     45
D214V10, multiclass
        clus
vv       CTSC MUTATED CTSC WILD-TYPE
  CLUS_1            4             84
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(215) Variable = AQP8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AQP8 MUTATED        3      7      2      1
  AQP8 WILD-TYPE    201    130     45      2
D215V1, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            3            201
  CLUS_2            7            130
  CLUS_3            2             45
  CLUS_4            1              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AQP8 MUTATED        3      5      2      0      1
  AQP8 WILD-TYPE     36     91     42     88     79
D215V2, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            3             36
  CLUS_2            5             91
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AQP8 MUTATED        0      5      1      2      3
  AQP8 WILD-TYPE     26     74     72     80     55
D215V3, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            5             74
  CLUS_3            1             72
  CLUS_4            2             80
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AQP8 MUTATED        2      3      4      2
  AQP8 WILD-TYPE    125     48     67     67
D215V4, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            3             48
  CLUS_3            4             67
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AQP8 MUTATED        0      3      5      2      2
  AQP8 WILD-TYPE     84     82     80     67     45
D215V5, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            5             80
  CLUS_4            2             67
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AQP8 MUTATED        3      1      0      8
  AQP8 WILD-TYPE     92     73    121     72
D215V6, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            8             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AQP8 MUTATED        8      2      0      3      0      0
  AQP8 WILD-TYPE     44     62     72    101     40     59
D215V7, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            8             44
  CLUS_2            2             62
  CLUS_3            0             72
  CLUS_4            3            101
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AQP8 MUTATED       10      2      1
  AQP8 WILD-TYPE    207     73     98
D215V8, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1           10            207
  CLUS_2            2             73
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AQP8 MUTATED        5      3      1
  AQP8 WILD-TYPE    116    105     71
D215V9, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            3            105
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AQP8 MUTATED        6      1      1      0      1
  AQP8 WILD-TYPE     82     65     44     55     46
D215V10, multiclass
        clus
vv       AQP8 MUTATED AQP8 WILD-TYPE
  CLUS_1            6             82
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(216) Variable = KANK4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KANK4 MUTATED        4     10      1      0
  KANK4 WILD-TYPE    200    127     46      3
D216V1, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            10             127
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KANK4 MUTATED        2     10      0      1      0
  KANK4 WILD-TYPE     37     86     44     87     80
D216V2, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            10              86
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KANK4 MUTATED        1      4      4      2      2
  KANK4 WILD-TYPE     25     75     69     80     56
D216V3, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             4              69
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KANK4 MUTATED        3      5      3      2
  KANK4 WILD-TYPE    124     46     68     67
D216V4, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             5              46
  CLUS_3             3              68
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KANK4 MUTATED        2      0      9      2      2
  KANK4 WILD-TYPE     82     85     76     67     45
D216V5, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             0              85
  CLUS_3             9              76
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KANK4 MUTATED        4      1      3      7
  KANK4 WILD-TYPE     91     73    118     73
D216V6, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             3             118
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KANK4 MUTATED        4      3      3      2      2      1
  KANK4 WILD-TYPE     48     61     69    102     38     58
D216V7, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             3              61
  CLUS_3             3              69
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KANK4 MUTATED       12      1      2
  KANK4 WILD-TYPE    205     74     97
D216V8, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KANK4 MUTATED        7      3      3
  KANK4 WILD-TYPE    114    105     69
D216V9, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             3             105
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KANK4 MUTATED        6      0      2      2      3
  KANK4 WILD-TYPE     82     66     43     53     44
D216V10, multiclass
        clus
vv       KANK4 MUTATED KANK4 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             2              53
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(217) Variable = ACVR1B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1B MUTATED        3      6      4      0
  ACVR1B WILD-TYPE    201    131     43      3
D217V1, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              3              201
  CLUS_2              6              131
  CLUS_3              4               43
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACVR1B MUTATED        1      6      0      2      1
  ACVR1B WILD-TYPE     38     90     44     86     79
D217V2, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               90
  CLUS_3              0               44
  CLUS_4              2               86
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACVR1B MUTATED        0      4      4      1      4
  ACVR1B WILD-TYPE     26     75     69     81     54
D217V3, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1B MUTATED        3      6      3      1
  ACVR1B WILD-TYPE    124     45     68     68
D217V4, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              3              124
  CLUS_2              6               45
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACVR1B MUTATED        0      1      2      1      7
  ACVR1B WILD-TYPE     84     84     83     68     40
D217V5, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              2               83
  CLUS_4              1               68
  CLUS_5              7               40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACVR1B MUTATED        3      0      1      7
  ACVR1B WILD-TYPE     92     74    120     73
D217V6, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              3               92
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACVR1B MUTATED        3      5      3      2      0      0
  ACVR1B WILD-TYPE     49     59     69    102     40     59
D217V7, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              3               49
  CLUS_2              5               59
  CLUS_3              3               69
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1B MUTATED       11      1      1
  ACVR1B WILD-TYPE    206     74     98
D217V8, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1             11              206
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACVR1B MUTATED        4      2      4
  ACVR1B WILD-TYPE    117    106     68
D217V9, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              4              117
  CLUS_2              2              106
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACVR1B MUTATED        3      1      2      0      4
  ACVR1B WILD-TYPE     85     65     43     55     43
D217V10, multiclass
        clus
vv       ACVR1B MUTATED ACVR1B WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(218) Variable = STAT6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT6 MUTATED        0      6      0      0
  STAT6 WILD-TYPE    204    131     47      3
D218V1, multiclass
        clus
vv       STAT6 MUTATED STAT6 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             6             131
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAT6 MUTATED        0      4      0      0      0
  STAT6 WILD-TYPE     39     92     44     88     80
D218V2, multiclass
        clus
vv       STAT6 MUTATED STAT6 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAT6 MUTATED        0      2      1      1      2
  STAT6 WILD-TYPE     26     77     72     81     56
D218V3, multiclass
        clus
vv       STAT6 MUTATED STAT6 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT6 MUTATED        1      4      0      1
  STAT6 WILD-TYPE    126     47     71     68
D218V4, multiclass
        clus
vv       STAT6 MUTATED STAT6 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAT6 MUTATED        0      1      3      0      1
  STAT6 WILD-TYPE     84     84     82     69     46
D218V5, multiclass
        clus
vv       STAT6 MUTATED STAT6 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             3              82
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAT6 MUTATED        1      2      0      2
  STAT6 WILD-TYPE     94     72    121     78
D218V6, multiclass
        clus
vv       STAT6 MUTATED STAT6 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAT6 MUTATED        2      2      0      1      1      0
  STAT6 WILD-TYPE     50     62     72    103     39     59
D218V7, multiclass
        clus
vv       STAT6 MUTATED STAT6 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             0              72
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAT6 MUTATED        4      2      0
  STAT6 WILD-TYPE    213     73     99
D218V8, multiclass
        clus
vv       STAT6 MUTATED STAT6 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             2              73
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAT6 MUTATED        2      1      1
  STAT6 WILD-TYPE    119    107     71
D218V9, multiclass
        clus
vv       STAT6 MUTATED STAT6 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAT6 MUTATED        1      1      0      0      2
  STAT6 WILD-TYPE     87     65     45     55     45
D218V10, multiclass
        clus
vv       STAT6 MUTATED STAT6 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(219) Variable = PUS7L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PUS7L MUTATED        2      7      0      0
  PUS7L WILD-TYPE    202    130     47      3
D219V1, multiclass
        clus
vv       PUS7L MUTATED PUS7L WILD-TYPE
  CLUS_1             2             202
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PUS7L MUTATED        0      4      0      0      1
  PUS7L WILD-TYPE     39     92     44     88     79
D219V2, multiclass
        clus
vv       PUS7L MUTATED PUS7L WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PUS7L MUTATED        2      4      1      1      0
  PUS7L WILD-TYPE     24     75     72     81     58
D219V3, multiclass
        clus
vv       PUS7L MUTATED PUS7L WILD-TYPE
  CLUS_1             2              24
  CLUS_2             4              75
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PUS7L MUTATED        2      3      2      1
  PUS7L WILD-TYPE    125     48     69     68
D219V4, multiclass
        clus
vv       PUS7L MUTATED PUS7L WILD-TYPE
  CLUS_1             2             125
  CLUS_2             3              48
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PUS7L MUTATED        1      1      4      0      1
  PUS7L WILD-TYPE     83     84     81     69     46
D219V5, multiclass
        clus
vv       PUS7L MUTATED PUS7L WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             4              81
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PUS7L MUTATED        3      1      2      1
  PUS7L WILD-TYPE     92     73    119     79
D219V6, multiclass
        clus
vv       PUS7L MUTATED PUS7L WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PUS7L MUTATED        0      6      2      0      0      1
  PUS7L WILD-TYPE     52     58     70    104     40     58
D219V7, multiclass
        clus
vv       PUS7L MUTATED PUS7L WILD-TYPE
  CLUS_1             0              52
  CLUS_2             6              58
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PUS7L MUTATED        8      0      1
  PUS7L WILD-TYPE    209     75     98
D219V8, multiclass
        clus
vv       PUS7L MUTATED PUS7L WILD-TYPE
  CLUS_1             8             209
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PUS7L MUTATED        0      0      5
  PUS7L WILD-TYPE    121    108     67
D219V9, multiclass
        clus
vv       PUS7L MUTATED PUS7L WILD-TYPE
  CLUS_1             0             121
  CLUS_2             0             108
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PUS7L MUTATED        0      0      3      0      2
  PUS7L WILD-TYPE     88     66     42     55     45
D219V10, multiclass
        clus
vv       PUS7L MUTATED PUS7L WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(220) Variable = ARID2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        6     20      2      0
  ARID2 WILD-TYPE    198    117     45      3
D220V1, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             6             198
  CLUS_2            20             117
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID2 MUTATED        2     13      4      2      3
  ARID2 WILD-TYPE     37     83     40     86     77
D220V2, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            13              83
  CLUS_3             4              40
  CLUS_4             2              86
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID2 MUTATED        1      8      7      3      6
  ARID2 WILD-TYPE     25     71     66     79     52
D220V3, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             8              71
  CLUS_3             7              66
  CLUS_4             3              79
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED        4     11      5      5
  ARID2 WILD-TYPE    123     40     66     64
D220V4, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             4             123
  CLUS_2            11              40
  CLUS_3             5              66
  CLUS_4             5              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID2 MUTATED        1      5     13      6      2
  ARID2 WILD-TYPE     83     80     72     63     45
D220V5, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             5              80
  CLUS_3            13              72
  CLUS_4             6              63
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID2 MUTATED       10      3      7      7
  ARID2 WILD-TYPE     85     71    114     73
D220V6, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1            10              85
  CLUS_2             3              71
  CLUS_3             7             114
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID2 MUTATED        4     13      7      3      2      0
  ARID2 WILD-TYPE     48     51     65    101     38     59
D220V7, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             4              48
  CLUS_2            13              51
  CLUS_3             7              65
  CLUS_4             3             101
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED       25      3      1
  ARID2 WILD-TYPE    192     72     98
D220V8, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1            25             192
  CLUS_2             3              72
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARID2 MUTATED       10      5      8
  ARID2 WILD-TYPE    111    103     64
D220V9, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1            10             111
  CLUS_2             5             103
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID2 MUTATED        8      2      7      0      6
  ARID2 WILD-TYPE     80     64     38     55     41
D220V10, multiclass
        clus
vv       ARID2 MUTATED ARID2 WILD-TYPE
  CLUS_1             8              80
  CLUS_2             2              64
  CLUS_3             7              38
  CLUS_4             0              55
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(221) Variable = ZMYM3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM3 MUTATED        2     12      0      0
  ZMYM3 WILD-TYPE    202    125     47      3
D221V1, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            12             125
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM3 MUTATED        0      9      3      0      1
  ZMYM3 WILD-TYPE     39     87     41     88     79
D221V2, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             9              87
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM3 MUTATED        2      3      4      1      2
  ZMYM3 WILD-TYPE     24     76     69     81     56
D221V3, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             3              76
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM3 MUTATED        6      4      1      1
  ZMYM3 WILD-TYPE    121     47     70     68
D221V4, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             6             121
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM3 MUTATED        1      3      6      3      2
  ZMYM3 WILD-TYPE     83     82     79     66     45
D221V5, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             6              79
  CLUS_4             3              66
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYM3 MUTATED        5      3      2      5
  ZMYM3 WILD-TYPE     90     71    119     75
D221V6, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             3              71
  CLUS_3             2             119
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMYM3 MUTATED        6      5      1      1      1      1
  ZMYM3 WILD-TYPE     46     59     71    103     39     58
D221V7, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             5              59
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM3 MUTATED       12      2      1
  ZMYM3 WILD-TYPE    205     73     98
D221V8, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZMYM3 MUTATED        7      1      5
  ZMYM3 WILD-TYPE    114    107     67
D221V9, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             1             107
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYM3 MUTATED        2      1      4      0      6
  ZMYM3 WILD-TYPE     86     65     41     55     41
D221V10, multiclass
        clus
vv       ZMYM3 MUTATED ZMYM3 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(222) Variable = EOMES MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EOMES MUTATED        3      6      0      0
  EOMES WILD-TYPE    201    131     47      3
D222V1, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             3             201
  CLUS_2             6             131
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EOMES MUTATED        1      4      1      1      0
  EOMES WILD-TYPE     38     92     43     87     80
D222V2, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EOMES MUTATED        0      4      1      1      2
  EOMES WILD-TYPE     26     75     72     81     56
D222V3, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EOMES MUTATED        2      3      2      1
  EOMES WILD-TYPE    125     48     69     68
D222V4, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             2             125
  CLUS_2             3              48
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EOMES MUTATED        1      2      3      2      1
  EOMES WILD-TYPE     83     83     82     67     46
D222V5, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             3              82
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EOMES MUTATED        3      2      1      3
  EOMES WILD-TYPE     92     72    120     77
D222V6, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EOMES MUTATED        4      2      1      2      0      0
  EOMES WILD-TYPE     48     62     71    102     40     59
D222V7, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             4              48
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EOMES MUTATED        6      2      1
  EOMES WILD-TYPE    211     73     98
D222V8, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             6             211
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EOMES MUTATED        6      1      0
  EOMES WILD-TYPE    115    107     72
D222V9, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EOMES MUTATED        3      1      0      0      3
  EOMES WILD-TYPE     85     65     45     55     44
D222V10, multiclass
        clus
vv       EOMES MUTATED EOMES WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(223) Variable = BPTF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BPTF MUTATED        8     21      1      0
  BPTF WILD-TYPE    196    116     46      3
D223V1, multiclass
        clus
vv       BPTF MUTATED BPTF WILD-TYPE
  CLUS_1            8            196
  CLUS_2           21            116
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BPTF MUTATED        1     13      4      5      0
  BPTF WILD-TYPE     38     83     40     83     80
D223V2, multiclass
        clus
vv       BPTF MUTATED BPTF WILD-TYPE
  CLUS_1            1             38
  CLUS_2           13             83
  CLUS_3            4             40
  CLUS_4            5             83
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BPTF MUTATED        2      9      7      3      8
  BPTF WILD-TYPE     24     70     66     79     50
D223V3, multiclass
        clus
vv       BPTF MUTATED BPTF WILD-TYPE
  CLUS_1            2             24
  CLUS_2            9             70
  CLUS_3            7             66
  CLUS_4            3             79
  CLUS_5            8             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BPTF MUTATED        5     14      6      4
  BPTF WILD-TYPE    122     37     65     65
D223V4, multiclass
        clus
vv       BPTF MUTATED BPTF WILD-TYPE
  CLUS_1            5            122
  CLUS_2           14             37
  CLUS_3            6             65
  CLUS_4            4             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BPTF MUTATED        3      7     11      1      7
  BPTF WILD-TYPE     81     78     74     68     40
D223V5, multiclass
        clus
vv       BPTF MUTATED BPTF WILD-TYPE
  CLUS_1            3             81
  CLUS_2            7             78
  CLUS_3           11             74
  CLUS_4            1             68
  CLUS_5            7             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BPTF MUTATED        7      5      2     15
  BPTF WILD-TYPE     88     69    119     65
D223V6, multiclass
        clus
vv       BPTF MUTATED BPTF WILD-TYPE
  CLUS_1            7             88
  CLUS_2            5             69
  CLUS_3            2            119
  CLUS_4           15             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BPTF MUTATED        8      8      6      3      1      3
  BPTF WILD-TYPE     44     56     66    101     39     56
D223V7, multiclass
        clus
vv       BPTF MUTATED BPTF WILD-TYPE
  CLUS_1            8             44
  CLUS_2            8             56
  CLUS_3            6             66
  CLUS_4            3            101
  CLUS_5            1             39
  CLUS_6            3             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BPTF MUTATED       23      0      6
  BPTF WILD-TYPE    194     75     93
D223V8, multiclass
        clus
vv       BPTF MUTATED BPTF WILD-TYPE
  CLUS_1           23            194
  CLUS_2            0             75
  CLUS_3            6             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BPTF MUTATED       10      3      6
  BPTF WILD-TYPE    111    105     66
D223V9, multiclass
        clus
vv       BPTF MUTATED BPTF WILD-TYPE
  CLUS_1           10            111
  CLUS_2            3            105
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BPTF MUTATED        7      0      1      2      9
  BPTF WILD-TYPE     81     66     44     53     38
D223V10, multiclass
        clus
vv       BPTF MUTATED BPTF WILD-TYPE
  CLUS_1            7             81
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            2             53
  CLUS_5            9             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(224) Variable = MTIF2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTIF2 MUTATED        1     15      2      0
  MTIF2 WILD-TYPE    203    122     45      3
D224V1, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            15             122
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTIF2 MUTATED        0      8      5      1      1
  MTIF2 WILD-TYPE     39     88     39     87     79
D224V2, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             8              88
  CLUS_3             5              39
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTIF2 MUTATED        1      5      4      0      5
  MTIF2 WILD-TYPE     25     74     69     82     53
D224V3, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTIF2 MUTATED        5      6      3      1
  MTIF2 WILD-TYPE    122     45     68     68
D224V4, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             6              45
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTIF2 MUTATED        1      3      8      3      1
  MTIF2 WILD-TYPE     83     82     77     66     46
D224V5, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             8              77
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTIF2 MUTATED        4      2      4      6
  MTIF2 WILD-TYPE     91     72    117     74
D224V6, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             4             117
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MTIF2 MUTATED        4      6      5      2      0      1
  MTIF2 WILD-TYPE     48     58     67    102     40     58
D224V7, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             6              58
  CLUS_3             5              67
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF2 MUTATED       13      2      3
  MTIF2 WILD-TYPE    204     73     96
D224V8, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1            13             204
  CLUS_2             2              73
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MTIF2 MUTATED        5      1      6
  MTIF2 WILD-TYPE    116    107     66
D224V9, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             1             107
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTIF2 MUTATED        3      2      2      1      4
  MTIF2 WILD-TYPE     85     64     43     54     43
D224V10, multiclass
        clus
vv       MTIF2 MUTATED MTIF2 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             2              64
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(225) Variable = ARHGAP18 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP18 MUTATED        4      5      0      0
  ARHGAP18 WILD-TYPE    200    132     47      3
D225V1, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                4                200
  CLUS_2                5                132
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP18 MUTATED        0      4      1      2      0
  ARHGAP18 WILD-TYPE     39     92     43     86     80
D225V2, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                4                 92
  CLUS_3                1                 43
  CLUS_4                2                 86
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP18 MUTATED        0      3      3      0      2
  ARHGAP18 WILD-TYPE     26     76     70     82     56
D225V3, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                3                 76
  CLUS_3                3                 70
  CLUS_4                0                 82
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP18 MUTATED        2      4      1      1
  ARHGAP18 WILD-TYPE    125     47     70     68
D225V4, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                4                 47
  CLUS_3                1                 70
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP18 MUTATED        1      1      4      0      3
  ARHGAP18 WILD-TYPE     83     84     81     69     44
D225V5, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                1                 84
  CLUS_3                4                 81
  CLUS_4                0                 69
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGAP18 MUTATED        2      1      2      4
  ARHGAP18 WILD-TYPE     93     73    119     76
D225V6, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                1                 73
  CLUS_3                2                119
  CLUS_4                4                 76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARHGAP18 MUTATED        4      3      2      0      0      0
  ARHGAP18 WILD-TYPE     48     61     70    104     40     59
D225V7, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                3                 61
  CLUS_3                2                 70
  CLUS_4                0                104
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP18 MUTATED        8      0      1
  ARHGAP18 WILD-TYPE    209     75     98
D225V8, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                8                209
  CLUS_2                0                 75
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGAP18 MUTATED        3      1      3
  ARHGAP18 WILD-TYPE    118    107     69
D225V9, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                3                118
  CLUS_2                1                107
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGAP18 MUTATED        3      0      1      0      3
  ARHGAP18 WILD-TYPE     85     66     44     55     44
D225V10, multiclass
        clus
vv       ARHGAP18 MUTATED ARHGAP18 WILD-TYPE
  CLUS_1                3                 85
  CLUS_2                0                 66
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(226) Variable = EFNB3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFNB3 MUTATED        4      8      1      0
  EFNB3 WILD-TYPE    200    129     46      3
D226V1, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             4             200
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFNB3 MUTATED        0      8      3      1      0
  EFNB3 WILD-TYPE     39     88     41     87     80
D226V2, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             8              88
  CLUS_3             3              41
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFNB3 MUTATED        0      5      2      2      2
  EFNB3 WILD-TYPE     26     74     71     80     56
D226V3, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             5              74
  CLUS_3             2              71
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFNB3 MUTATED        0      4      4      3
  EFNB3 WILD-TYPE    127     47     67     66
D226V4, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             4              47
  CLUS_3             4              67
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFNB3 MUTATED        1      3      7      0      2
  EFNB3 WILD-TYPE     83     82     78     69     45
D226V5, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             7              78
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFNB3 MUTATED        3      3      1      6
  EFNB3 WILD-TYPE     92     71    120     74
D226V6, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             3              71
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EFNB3 MUTATED        1      5      3      2      2      0
  EFNB3 WILD-TYPE     51     59     69    102     38     59
D226V7, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             5              59
  CLUS_3             3              69
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFNB3 MUTATED       10      1      2
  EFNB3 WILD-TYPE    207     74     97
D226V8, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFNB3 MUTATED        3      2      6
  EFNB3 WILD-TYPE    118    106     66
D226V9, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFNB3 MUTATED        6      0      3      0      2
  EFNB3 WILD-TYPE     82     66     42     55     45
D226V10, multiclass
        clus
vv       EFNB3 MUTATED EFNB3 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(227) Variable = NDST2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDST2 MUTATED        2      8      1      0
  NDST2 WILD-TYPE    202    129     46      3
D227V1, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDST2 MUTATED        0      5      1      0      1
  NDST2 WILD-TYPE     39     91     43     88     79
D227V2, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDST2 MUTATED        1      4      3      0      2
  NDST2 WILD-TYPE     25     75     70     82     56
D227V3, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDST2 MUTATED        4      5      1      0
  NDST2 WILD-TYPE    123     46     70     69
D227V4, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             5              46
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDST2 MUTATED        0      0      8      1      2
  NDST2 WILD-TYPE     84     85     77     68     45
D227V5, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             8              77
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NDST2 MUTATED        4      1      2      4
  NDST2 WILD-TYPE     91     73    119     76
D227V6, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NDST2 MUTATED        2      5      2      1      0      1
  NDST2 WILD-TYPE     50     59     70    103     40     58
D227V7, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             5              59
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDST2 MUTATED       10      0      1
  NDST2 WILD-TYPE    207     75     98
D227V8, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NDST2 MUTATED        4      0      4
  NDST2 WILD-TYPE    117    108     68
D227V9, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NDST2 MUTATED        2      0      2      1      3
  NDST2 WILD-TYPE     86     66     43     54     44
D227V10, multiclass
        clus
vv       NDST2 MUTATED NDST2 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(228) Variable = MICALCL MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MICALCL MUTATED        5      9      1      0
  MICALCL WILD-TYPE    199    128     46      3
D228V1, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               5               199
  CLUS_2               9               128
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MICALCL MUTATED        2      2      2      3      3
  MICALCL WILD-TYPE     37     94     42     85     77
D228V2, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               2                37
  CLUS_2               2                94
  CLUS_3               2                42
  CLUS_4               3                85
  CLUS_5               3                77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MICALCL MUTATED        0      5      1      1      6
  MICALCL WILD-TYPE     26     74     72     81     52
D228V3, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               0                26
  CLUS_2               5                74
  CLUS_3               1                72
  CLUS_4               1                81
  CLUS_5               6                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MICALCL MUTATED        3      5      4      1
  MICALCL WILD-TYPE    124     46     67     68
D228V4, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               3               124
  CLUS_2               5                46
  CLUS_3               4                67
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MICALCL MUTATED        4      3      4      1      2
  MICALCL WILD-TYPE     80     82     81     68     45
D228V5, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               4                80
  CLUS_2               3                82
  CLUS_3               4                81
  CLUS_4               1                68
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MICALCL MUTATED        3      2      5      4
  MICALCL WILD-TYPE     92     72    116     76
D228V6, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               3                92
  CLUS_2               2                72
  CLUS_3               5               116
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MICALCL MUTATED        2      4      3      4      0      2
  MICALCL WILD-TYPE     50     60     69    100     40     57
D228V7, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               2                50
  CLUS_2               4                60
  CLUS_3               3                69
  CLUS_4               4               100
  CLUS_5               0                40
  CLUS_6               2                57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MICALCL MUTATED       11      2      2
  MICALCL WILD-TYPE    206     73     97
D228V8, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1              11               206
  CLUS_2               2                73
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  MICALCL MUTATED        3      4      3
  MICALCL WILD-TYPE    118    104     69
D228V9, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               3               118
  CLUS_2               4               104
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MICALCL MUTATED        2      3      1      2      2
  MICALCL WILD-TYPE     86     63     44     53     45
D228V10, multiclass
        clus
vv       MICALCL MUTATED MICALCL WILD-TYPE
  CLUS_1               2                86
  CLUS_2               3                63
  CLUS_3               1                44
  CLUS_4               2                53
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(229) Variable = MMP3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP3 MUTATED        1     11      0      0
  MMP3 WILD-TYPE    203    126     47      3
D229V1, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            1            203
  CLUS_2           11            126
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP3 MUTATED        0      6      1      1      3
  MMP3 WILD-TYPE     39     90     43     87     77
D229V2, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            6             90
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP3 MUTATED        1      1      5      1      2
  MMP3 WILD-TYPE     25     78     68     81     56
D229V3, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             78
  CLUS_3            5             68
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP3 MUTATED        1      6      1      2
  MMP3 WILD-TYPE    126     45     70     67
D229V4, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            6             45
  CLUS_3            1             70
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP3 MUTATED        0      0      9      3      0
  MMP3 WILD-TYPE     84     85     76     66     47
D229V5, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            9             76
  CLUS_4            3             66
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP3 MUTATED        4      1      2      5
  MMP3 WILD-TYPE     91     73    119     75
D229V6, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MMP3 MUTATED        3      5      2      0      2      0
  MMP3 WILD-TYPE     49     59     70    104     38     59
D229V7, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            5             59
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMP3 MUTATED        9      2      1
  MMP3 WILD-TYPE    208     73     98
D229V8, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            9            208
  CLUS_2            2             73
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MMP3 MUTATED        5      0      5
  MMP3 WILD-TYPE    116    108     67
D229V9, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            0            108
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP3 MUTATED        4      0      3      0      3
  MMP3 WILD-TYPE     84     66     42     55     44
D229V10, multiclass
        clus
vv       MMP3 MUTATED MMP3 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            0             66
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(230) Variable = OPTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPTN MUTATED        3      9      0      0
  OPTN WILD-TYPE    201    128     47      3
D230V1, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            3            201
  CLUS_2            9            128
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPTN MUTATED        0      5      1      1      2
  OPTN WILD-TYPE     39     91     43     87     78
D230V2, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            0             39
  CLUS_2            5             91
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPTN MUTATED        1      6      3      0      1
  OPTN WILD-TYPE     25     73     70     82     57
D230V3, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            1             25
  CLUS_2            6             73
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPTN MUTATED        2      5      4      0
  OPTN WILD-TYPE    125     46     67     69
D230V4, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            2            125
  CLUS_2            5             46
  CLUS_3            4             67
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPTN MUTATED        0      3      6      2      1
  OPTN WILD-TYPE     84     82     79     67     46
D230V5, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            6             79
  CLUS_4            2             67
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPTN MUTATED        3      1      2      6
  OPTN WILD-TYPE     92     73    119     74
D230V6, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OPTN MUTATED        3      6      0      2      0      1
  OPTN WILD-TYPE     49     58     72    102     40     58
D230V7, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            3             49
  CLUS_2            6             58
  CLUS_3            0             72
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OPTN MUTATED        9      1      2
  OPTN WILD-TYPE    208     74     97
D230V8, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            9            208
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OPTN MUTATED        2      2      4
  OPTN WILD-TYPE    119    106     68
D230V9, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            2            119
  CLUS_2            2            106
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPTN MUTATED        1      0      3      2      2
  OPTN WILD-TYPE     87     66     42     53     45
D230V10, multiclass
        clus
vv       OPTN MUTATED OPTN WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            3             42
  CLUS_4            2             53
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(231) Variable = ZFHX3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX3 MUTATED        9     25      4      0
  ZFHX3 WILD-TYPE    195    112     43      3
D231V1, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             9             195
  CLUS_2            25             112
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX3 MUTATED        2     19      3      3      3
  ZFHX3 WILD-TYPE     37     77     41     85     77
D231V2, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            19              77
  CLUS_3             3              41
  CLUS_4             3              85
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX3 MUTATED        3     11      7      2      9
  ZFHX3 WILD-TYPE     23     68     66     80     49
D231V3, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             3              23
  CLUS_2            11              68
  CLUS_3             7              66
  CLUS_4             2              80
  CLUS_5             9              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX3 MUTATED        8     15      7      2
  ZFHX3 WILD-TYPE    119     36     64     67
D231V4, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             8             119
  CLUS_2            15              36
  CLUS_3             7              64
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX3 MUTATED        3      4     20      4      4
  ZFHX3 WILD-TYPE     81     81     65     65     43
D231V5, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             4              81
  CLUS_3            20              65
  CLUS_4             4              65
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFHX3 MUTATED        9      6      4     16
  ZFHX3 WILD-TYPE     86     68    117     64
D231V6, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             9              86
  CLUS_2             6              68
  CLUS_3             4             117
  CLUS_4            16              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFHX3 MUTATED        9     15      6      4      1      3
  ZFHX3 WILD-TYPE     43     49     66    100     39     56
D231V7, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             9              43
  CLUS_2            15              49
  CLUS_3             6              66
  CLUS_4             4             100
  CLUS_5             1              39
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX3 MUTATED       27      4      7
  ZFHX3 WILD-TYPE    190     71     92
D231V8, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1            27             190
  CLUS_2             4              71
  CLUS_3             7              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZFHX3 MUTATED       12      7     10
  ZFHX3 WILD-TYPE    109    101     62
D231V9, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1            12             109
  CLUS_2             7             101
  CLUS_3            10              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFHX3 MUTATED        7      3      7      4      8
  ZFHX3 WILD-TYPE     81     63     38     51     39
D231V10, multiclass
        clus
vv       ZFHX3 MUTATED ZFHX3 WILD-TYPE
  CLUS_1             7              81
  CLUS_2             3              63
  CLUS_3             7              38
  CLUS_4             4              51
  CLUS_5             8              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(232) Variable = ACP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACP1 MUTATED        0      9      0      0
  ACP1 WILD-TYPE    204    128     47      3
D232V1, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            9            128
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACP1 MUTATED        0      6      0      0      0
  ACP1 WILD-TYPE     39     90     44     88     80
D232V2, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            6             90
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACP1 MUTATED        0      2      2      0      2
  ACP1 WILD-TYPE     26     77     71     82     56
D232V3, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACP1 MUTATED        0      5      0      1
  ACP1 WILD-TYPE    127     46     71     68
D232V4, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            5             46
  CLUS_3            0             71
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACP1 MUTATED        0      3      4      1      0
  ACP1 WILD-TYPE     84     82     81     68     47
D232V5, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            4             81
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACP1 MUTATED        3      1      0      4
  ACP1 WILD-TYPE     92     73    121     76
D232V6, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACP1 MUTATED        3      3      1      0      2      0
  ACP1 WILD-TYPE     49     61     71    104     38     59
D232V7, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            3             61
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACP1 MUTATED        6      0      3
  ACP1 WILD-TYPE    211     75     96
D232V8, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            6            211
  CLUS_2            0             75
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ACP1 MUTATED        3      1      1
  ACP1 WILD-TYPE    118    107     71
D232V9, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            1            107
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACP1 MUTATED        2      0      0      0      3
  ACP1 WILD-TYPE     86     66     45     55     44
D232V10, multiclass
        clus
vv       ACP1 MUTATED ACP1 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(233) Variable = YY1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YY1 MUTATED        1      7      0      0
  YY1 WILD-TYPE    203    130     47      3
D233V1, multiclass
        clus
vv       YY1 MUTATED YY1 WILD-TYPE
  CLUS_1           1           203
  CLUS_2           7           130
  CLUS_3           0            47
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YY1 MUTATED        0      3      2      1      0
  YY1 WILD-TYPE     39     93     42     87     80
D233V2, multiclass
        clus
vv       YY1 MUTATED YY1 WILD-TYPE
  CLUS_1           0            39
  CLUS_2           3            93
  CLUS_3           2            42
  CLUS_4           1            87
  CLUS_5           0            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YY1 MUTATED        0      2      2      2      1
  YY1 WILD-TYPE     26     77     71     80     57
D233V3, multiclass
        clus
vv       YY1 MUTATED YY1 WILD-TYPE
  CLUS_1           0            26
  CLUS_2           2            77
  CLUS_3           2            71
  CLUS_4           2            80
  CLUS_5           1            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YY1 MUTATED        2      2      2      1
  YY1 WILD-TYPE    125     49     69     68
D233V4, multiclass
        clus
vv       YY1 MUTATED YY1 WILD-TYPE
  CLUS_1           2           125
  CLUS_2           2            49
  CLUS_3           2            69
  CLUS_4           1            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YY1 MUTATED        1      2      4      0      1
  YY1 WILD-TYPE     83     83     81     69     46
D233V5, multiclass
        clus
vv       YY1 MUTATED YY1 WILD-TYPE
  CLUS_1           1            83
  CLUS_2           2            83
  CLUS_3           4            81
  CLUS_4           0            69
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YY1 MUTATED        1      1      2      4
  YY1 WILD-TYPE     94     73    119     76
D233V6, multiclass
        clus
vv       YY1 MUTATED YY1 WILD-TYPE
  CLUS_1           1            94
  CLUS_2           1            73
  CLUS_3           2           119
  CLUS_4           4            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  YY1 MUTATED        1      3      2      2      0      0
  YY1 WILD-TYPE     51     61     70    102     40     59
D233V7, multiclass
        clus
vv       YY1 MUTATED YY1 WILD-TYPE
  CLUS_1           1            51
  CLUS_2           3            61
  CLUS_3           2            70
  CLUS_4           2           102
  CLUS_5           0            40
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  YY1 MUTATED        8      0      0
  YY1 WILD-TYPE    209     75     99
D233V8, multiclass
        clus
vv       YY1 MUTATED YY1 WILD-TYPE
  CLUS_1           8           209
  CLUS_2           0            75
  CLUS_3           0            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  YY1 MUTATED        4      2      0
  YY1 WILD-TYPE    117    106     72
D233V9, multiclass
        clus
vv       YY1 MUTATED YY1 WILD-TYPE
  CLUS_1           4           117
  CLUS_2           2           106
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YY1 MUTATED        4      1      0      0      1
  YY1 WILD-TYPE     84     65     45     55     46
D233V10, multiclass
        clus
vv       YY1 MUTATED YY1 WILD-TYPE
  CLUS_1           4            84
  CLUS_2           1            65
  CLUS_3           0            45
  CLUS_4           0            55
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(234) Variable = CUL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL2 MUTATED        1      7      1      0
  CUL2 WILD-TYPE    203    130     46      3
D234V1, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            7            130
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL2 MUTATED        1      5      2      0      0
  CUL2 WILD-TYPE     38     91     42     88     80
D234V2, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            5             91
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL2 MUTATED        0      4      3      1      1
  CUL2 WILD-TYPE     26     75     70     81     57
D234V3, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL2 MUTATED        1      5      3      0
  CUL2 WILD-TYPE    126     46     68     69
D234V4, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            5             46
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL2 MUTATED        0      3      4      1      0
  CUL2 WILD-TYPE     84     82     81     68     47
D234V5, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            4             81
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL2 MUTATED        2      1      0      5
  CUL2 WILD-TYPE     93     73    121     75
D234V6, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CUL2 MUTATED        0      3      3      1      1      1
  CUL2 WILD-TYPE     52     61     69    103     39     58
D234V7, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            3             61
  CLUS_3            3             69
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL2 MUTATED        8      1      0
  CUL2 WILD-TYPE    209     74     99
D234V8, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            8            209
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL2 MUTATED        3      2      2
  CUL2 WILD-TYPE    118    106     70
D234V9, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            2            106
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL2 MUTATED        1      1      2      1      2
  CUL2 WILD-TYPE     87     65     43     54     45
D234V10, multiclass
        clus
vv       CUL2 MUTATED CUL2 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            1             65
  CLUS_3            2             43
  CLUS_4            1             54
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(235) Variable = DAO MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAO MUTATED        3     10      1      0
  DAO WILD-TYPE    201    127     46      3
D235V1, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           3           201
  CLUS_2          10           127
  CLUS_3           1            46
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAO MUTATED        2      6      2      0      1
  DAO WILD-TYPE     37     90     42     88     79
D235V2, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           2            37
  CLUS_2           6            90
  CLUS_3           2            42
  CLUS_4           0            88
  CLUS_5           1            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAO MUTATED        2      4      3      0      2
  DAO WILD-TYPE     24     75     70     82     56
D235V3, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           2            24
  CLUS_2           4            75
  CLUS_3           3            70
  CLUS_4           0            82
  CLUS_5           2            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAO MUTATED        4      4      3      0
  DAO WILD-TYPE    123     47     68     69
D235V4, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           4           123
  CLUS_2           4            47
  CLUS_3           3            68
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAO MUTATED        2      3      4      3      2
  DAO WILD-TYPE     82     82     81     66     45
D235V5, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           2            82
  CLUS_2           3            82
  CLUS_3           4            81
  CLUS_4           3            66
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAO MUTATED        6      1      2      5
  DAO WILD-TYPE     89     73    119     75
D235V6, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           6            89
  CLUS_2           1            73
  CLUS_3           2           119
  CLUS_4           5            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DAO MUTATED        4      1      2      3      2      2
  DAO WILD-TYPE     48     63     70    101     38     57
D235V7, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           4            48
  CLUS_2           1            63
  CLUS_3           2            70
  CLUS_4           3           101
  CLUS_5           2            38
  CLUS_6           2            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DAO MUTATED       10      2      2
  DAO WILD-TYPE    207     73     97
D235V8, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1          10           207
  CLUS_2           2            73
  CLUS_3           2            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DAO MUTATED        3      3      3
  DAO WILD-TYPE    118    105     69
D235V9, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           3           118
  CLUS_2           3           105
  CLUS_3           3            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAO MUTATED        4      2      0      0      3
  DAO WILD-TYPE     84     64     45     55     44
D235V10, multiclass
        clus
vv       DAO MUTATED DAO WILD-TYPE
  CLUS_1           4            84
  CLUS_2           2            64
  CLUS_3           0            45
  CLUS_4           0            55
  CLUS_5           3            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(236) Variable = TRUB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRUB1 MUTATED        1      9      1      0
  TRUB1 WILD-TYPE    203    128     46      3
D236V1, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             9             128
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRUB1 MUTATED        2      4      1      0      2
  TRUB1 WILD-TYPE     37     92     43     88     78
D236V2, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRUB1 MUTATED        1      5      2      1      1
  TRUB1 WILD-TYPE     25     74     71     81     57
D236V3, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRUB1 MUTATED        2      4      3      1
  TRUB1 WILD-TYPE    125     47     68     68
D236V4, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRUB1 MUTATED        1      2      7      0      1
  TRUB1 WILD-TYPE     83     83     78     69     46
D236V5, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             7              78
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRUB1 MUTATED        2      2      2      5
  TRUB1 WILD-TYPE     93     72    119     75
D236V6, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRUB1 MUTATED        4      3      0      3      0      1
  TRUB1 WILD-TYPE     48     61     72    101     40     58
D236V7, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             3              61
  CLUS_3             0              72
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRUB1 MUTATED        9      1      1
  TRUB1 WILD-TYPE    208     74     98
D236V8, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRUB1 MUTATED        5      1      3
  TRUB1 WILD-TYPE    116    107     69
D236V9, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRUB1 MUTATED        4      0      2      0      3
  TRUB1 WILD-TYPE     84     66     43     55     44
D236V10, multiclass
        clus
vv       TRUB1 MUTATED TRUB1 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(237) Variable = PKN2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKN2 MUTATED        2     13      1      0
  PKN2 WILD-TYPE    202    124     46      3
D237V1, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            2            202
  CLUS_2           13            124
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PKN2 MUTATED        1      6      2      1      3
  PKN2 WILD-TYPE     38     90     42     87     77
D237V2, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            6             90
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PKN2 MUTATED        0      6      2      2      3
  PKN2 WILD-TYPE     26     73     71     80     55
D237V3, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            6             73
  CLUS_3            2             71
  CLUS_4            2             80
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKN2 MUTATED        2      4      5      2
  PKN2 WILD-TYPE    125     47     66     67
D237V4, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            4             47
  CLUS_3            5             66
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PKN2 MUTATED        0      4      4      3      4
  PKN2 WILD-TYPE     84     81     81     66     43
D237V5, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            4             81
  CLUS_3            4             81
  CLUS_4            3             66
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKN2 MUTATED        5      2      1      7
  PKN2 WILD-TYPE     90     72    120     73
D237V6, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            5             90
  CLUS_2            2             72
  CLUS_3            1            120
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PKN2 MUTATED        7      3      3      2      0      1
  PKN2 WILD-TYPE     45     61     69    102     40     58
D237V7, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            7             45
  CLUS_2            3             61
  CLUS_3            3             69
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PKN2 MUTATED       12      3      1
  PKN2 WILD-TYPE    205     72     98
D237V8, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1           12            205
  CLUS_2            3             72
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PKN2 MUTATED        8      1      2
  PKN2 WILD-TYPE    113    107     70
D237V9, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            8            113
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PKN2 MUTATED        2      3      0      1      5
  PKN2 WILD-TYPE     86     63     45     54     42
D237V10, multiclass
        clus
vv       PKN2 MUTATED PKN2 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            3             63
  CLUS_3            0             45
  CLUS_4            1             54
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(238) Variable = KLHDC5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHDC5 MUTATED        1      8      1      0
  KLHDC5 WILD-TYPE    203    129     46      3
D238V1, multiclass
        clus
vv       KLHDC5 MUTATED KLHDC5 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              8              129
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHDC5 MUTATED        0      4      2      1      1
  KLHDC5 WILD-TYPE     39     92     42     87     79
D238V2, multiclass
        clus
vv       KLHDC5 MUTATED KLHDC5 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHDC5 MUTATED        0      3      4      0      1
  KLHDC5 WILD-TYPE     26     76     69     82     57
D238V3, multiclass
        clus
vv       KLHDC5 MUTATED KLHDC5 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              4               69
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHDC5 MUTATED        0      4      3      1
  KLHDC5 WILD-TYPE    127     47     68     68
D238V4, multiclass
        clus
vv       KLHDC5 MUTATED KLHDC5 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              4               47
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHDC5 MUTATED        0      0      6      1      2
  KLHDC5 WILD-TYPE     84     85     79     68     45
D238V5, multiclass
        clus
vv       KLHDC5 MUTATED KLHDC5 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHDC5 MUTATED        2      1      1      5
  KLHDC5 WILD-TYPE     93     73    120     75
D238V6, multiclass
        clus
vv       KLHDC5 MUTATED KLHDC5 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLHDC5 MUTATED        2      4      2      1      1      0
  KLHDC5 WILD-TYPE     50     60     70    103     39     59
D238V7, multiclass
        clus
vv       KLHDC5 MUTATED KLHDC5 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              4               60
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHDC5 MUTATED        7      2      1
  KLHDC5 WILD-TYPE    210     73     98
D238V8, multiclass
        clus
vv       KLHDC5 MUTATED KLHDC5 WILD-TYPE
  CLUS_1              7              210
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHDC5 MUTATED        3      0      4
  KLHDC5 WILD-TYPE    118    108     68
D238V9, multiclass
        clus
vv       KLHDC5 MUTATED KLHDC5 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHDC5 MUTATED        3      1      1      0      2
  KLHDC5 WILD-TYPE     85     65     44     55     45
D238V10, multiclass
        clus
vv       KLHDC5 MUTATED KLHDC5 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(239) Variable = TFE3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFE3 MUTATED        2      5      2      0
  TFE3 WILD-TYPE    202    132     45      3
D239V1, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            2            202
  CLUS_2            5            132
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TFE3 MUTATED        0      7      1      0      0
  TFE3 WILD-TYPE     39     89     43     88     80
D239V2, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            7             89
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TFE3 MUTATED        0      1      2      1      3
  TFE3 WILD-TYPE     26     78     71     81     55
D239V3, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFE3 MUTATED        0      5      1      1
  TFE3 WILD-TYPE    127     46     70     68
D239V4, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            5             46
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TFE3 MUTATED        1      0      4      1      3
  TFE3 WILD-TYPE     83     85     81     68     44
D239V5, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            0             85
  CLUS_3            4             81
  CLUS_4            1             68
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TFE3 MUTATED        2      0      1      6
  TFE3 WILD-TYPE     93     74    120     74
D239V6, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            0             74
  CLUS_3            1            120
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TFE3 MUTATED        4      3      2      0      0      0
  TFE3 WILD-TYPE     48     61     70    104     40     59
D239V7, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            3             61
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TFE3 MUTATED        9      0      0
  TFE3 WILD-TYPE    208     75     99
D239V8, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            9            208
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TFE3 MUTATED        4      0      3
  TFE3 WILD-TYPE    117    108     69
D239V9, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            0            108
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TFE3 MUTATED        1      0      2      0      4
  TFE3 WILD-TYPE     87     66     43     55     43
D239V10, multiclass
        clus
vv       TFE3 MUTATED TFE3 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(240) Variable = GCC2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCC2 MUTATED        2     11      1      0
  GCC2 WILD-TYPE    202    126     46      3
D240V1, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            2            202
  CLUS_2           11            126
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCC2 MUTATED        1      4      3      1      1
  GCC2 WILD-TYPE     38     92     41     87     79
D240V2, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            4             92
  CLUS_3            3             41
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCC2 MUTATED        1      8      2      0      3
  GCC2 WILD-TYPE     25     71     71     82     55
D240V3, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            8             71
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCC2 MUTATED        3      6      5      0
  GCC2 WILD-TYPE    124     45     66     69
D240V4, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            6             45
  CLUS_3            5             66
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCC2 MUTATED        1      0     11      1      0
  GCC2 WILD-TYPE     83     85     74     68     47
D240V5, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            0             85
  CLUS_3           11             74
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCC2 MUTATED        2      2      4      5
  GCC2 WILD-TYPE     93     72    117     75
D240V6, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            2             72
  CLUS_3            4            117
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GCC2 MUTATED        3      7      3      0      0      1
  GCC2 WILD-TYPE     49     57     69    104     40     58
D240V7, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            7             57
  CLUS_3            3             69
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GCC2 MUTATED       13      0      1
  GCC2 WILD-TYPE    204     75     98
D240V8, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1           13            204
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GCC2 MUTATED        3      1      4
  GCC2 WILD-TYPE    118    107     68
D240V9, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            1            107
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCC2 MUTATED        2      0      3      1      2
  GCC2 WILD-TYPE     86     66     42     54     45
D240V10, multiclass
        clus
vv       GCC2 MUTATED GCC2 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            3             42
  CLUS_4            1             54
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(241) Variable = ARAF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARAF MUTATED        1      9      2      0
  ARAF WILD-TYPE    203    128     45      3
D241V1, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            1            203
  CLUS_2            9            128
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARAF MUTATED        1      7      0      1      1
  ARAF WILD-TYPE     38     89     44     87     79
D241V2, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            1             38
  CLUS_2            7             89
  CLUS_3            0             44
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARAF MUTATED        1      3      2      0      3
  ARAF WILD-TYPE     25     76     71     82     55
D241V3, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARAF MUTATED        1      5      2      1
  ARAF WILD-TYPE    126     46     69     68
D241V4, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            1            126
  CLUS_2            5             46
  CLUS_3            2             69
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARAF MUTATED        2      2      7      0      0
  ARAF WILD-TYPE     82     83     78     69     47
D241V5, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            2             82
  CLUS_2            2             83
  CLUS_3            7             78
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARAF MUTATED        3      1      2      5
  ARAF WILD-TYPE     92     73    119     75
D241V6, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARAF MUTATED        1      5      3      0      2      1
  ARAF WILD-TYPE     51     59     69    104     38     58
D241V7, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            1             51
  CLUS_2            5             59
  CLUS_3            3             69
  CLUS_4            0            104
  CLUS_5            2             38
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ARAF MUTATED        9      0      3
  ARAF WILD-TYPE    208     75     96
D241V8, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            9            208
  CLUS_2            0             75
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ARAF MUTATED        4      1      5
  ARAF WILD-TYPE    117    107     67
D241V9, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            4            117
  CLUS_2            1            107
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARAF MUTATED        3      0      3      1      3
  ARAF WILD-TYPE     85     66     42     54     44
D241V10, multiclass
        clus
vv       ARAF MUTATED ARAF WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            3             42
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(242) Variable = CDKN2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED        9      5      2      0
  CDKN2A WILD-TYPE    195    132     45      3
D242V1, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              9              195
  CLUS_2              5              132
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED        3      6      0      2      3
  CDKN2A WILD-TYPE     36     90     44     86     77
D242V2, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              3               36
  CLUS_2              6               90
  CLUS_3              0               44
  CLUS_4              2               86
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED        0      4      5      1      0
  CDKN2A WILD-TYPE     26     75     68     81     58
D242V3, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              5               68
  CLUS_4              1               81
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED        6      2      1      1
  CDKN2A WILD-TYPE    121     49     70     68
D242V4, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              6              121
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED        6      2      2      5      1
  CDKN2A WILD-TYPE     78     83     83     64     46
D242V5, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              6               78
  CLUS_2              2               83
  CLUS_3              2               83
  CLUS_4              5               64
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2A MUTATED        5      2      6      3
  CDKN2A WILD-TYPE     90     72    115     77
D242V6, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              5               90
  CLUS_2              2               72
  CLUS_3              6              115
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDKN2A MUTATED        5      2      1      2      4      2
  CDKN2A WILD-TYPE     47     62     71    102     36     57
D242V7, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              5               47
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              4               36
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED        9      1      6
  CDKN2A WILD-TYPE    208     74     93
D242V8, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              9              208
  CLUS_2              1               74
  CLUS_3              6               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDKN2A MUTATED       11      2      1
  CDKN2A WILD-TYPE    110    106     71
D242V9, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1             11              110
  CLUS_2              2              106
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2A MUTATED        2      1      1      4      6
  CDKN2A WILD-TYPE     86     65     44     51     41
D242V10, multiclass
        clus
vv       CDKN2A MUTATED CDKN2A WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              4               51
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(243) Variable = MDM2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDM2 MUTATED        1      4      2      0
  MDM2 WILD-TYPE    203    133     45      3
D243V1, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            4            133
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MDM2 MUTATED        1      3      0      0      1
  MDM2 WILD-TYPE     38     93     44     88     79
D243V2, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            3             93
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MDM2 MUTATED        1      1      3      1      1
  MDM2 WILD-TYPE     25     78     70     81     57
D243V3, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             78
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDM2 MUTATED        2      4      0      1
  MDM2 WILD-TYPE    125     47     71     68
D243V4, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            4             47
  CLUS_3            0             71
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MDM2 MUTATED        1      1      4      0      0
  MDM2 WILD-TYPE     83     84     81     69     47
D243V5, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            1             84
  CLUS_3            4             81
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MDM2 MUTATED        2      1      0      3
  MDM2 WILD-TYPE     93     73    121     77
D243V6, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MDM2 MUTATED        2      2      0      2      0      1
  MDM2 WILD-TYPE     50     62     72    102     40     58
D243V7, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            2             62
  CLUS_3            0             72
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDM2 MUTATED        5      1      1
  MDM2 WILD-TYPE    212     74     98
D243V8, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            5            212
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MDM2 MUTATED        1      1      1
  MDM2 WILD-TYPE    120    107     71
D243V9, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            1            120
  CLUS_2            1            107
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MDM2 MUTATED        0      1      1      0      1
  MDM2 WILD-TYPE     88     65     44     55     46
D243V10, multiclass
        clus
vv       MDM2 MUTATED MDM2 WILD-TYPE
  CLUS_1            0             88
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(244) Variable = C4ORF6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4ORF6 MUTATED        0     11      0      0
  C4ORF6 WILD-TYPE    204    126     47      3
D244V1, multiclass
        clus
vv       C4ORF6 MUTATED C4ORF6 WILD-TYPE
  CLUS_1              0              204
  CLUS_2             11              126
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C4ORF6 MUTATED        1      5      3      0      1
  C4ORF6 WILD-TYPE     38     91     41     88     79
D244V2, multiclass
        clus
vv       C4ORF6 MUTATED C4ORF6 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              3               41
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C4ORF6 MUTATED        1      4      3      0      1
  C4ORF6 WILD-TYPE     25     75     70     82     57
D244V3, multiclass
        clus
vv       C4ORF6 MUTATED C4ORF6 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              4               75
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4ORF6 MUTATED        2      5      2      0
  C4ORF6 WILD-TYPE    125     46     69     69
D244V4, multiclass
        clus
vv       C4ORF6 MUTATED C4ORF6 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              5               46
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C4ORF6 MUTATED        0      2      6      0      2
  C4ORF6 WILD-TYPE     84     83     79     69     45
D244V5, multiclass
        clus
vv       C4ORF6 MUTATED C4ORF6 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              6               79
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C4ORF6 MUTATED        1      0      1      8
  C4ORF6 WILD-TYPE     94     74    120     72
D244V6, multiclass
        clus
vv       C4ORF6 MUTATED C4ORF6 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              8               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C4ORF6 MUTATED        5      4      0      2      1      0
  C4ORF6 WILD-TYPE     47     60     72    102     39     59
D244V7, multiclass
        clus
vv       C4ORF6 MUTATED C4ORF6 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              4               60
  CLUS_3              0               72
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  C4ORF6 MUTATED       10      1      1
  C4ORF6 WILD-TYPE    207     74     98
D244V8, multiclass
        clus
vv       C4ORF6 MUTATED C4ORF6 WILD-TYPE
  CLUS_1             10              207
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  C4ORF6 MUTATED        5      2      3
  C4ORF6 WILD-TYPE    116    106     69
D244V9, multiclass
        clus
vv       C4ORF6 MUTATED C4ORF6 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              2              106
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C4ORF6 MUTATED        4      1      1      0      4
  C4ORF6 WILD-TYPE     84     65     44     55     43
D244V10, multiclass
        clus
vv       C4ORF6 MUTATED C4ORF6 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(245) Variable = CASC3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC3 MUTATED        3      7      1      0
  CASC3 WILD-TYPE    201    130     46      3
D245V1, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             7             130
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASC3 MUTATED        1      6      1      2      1
  CASC3 WILD-TYPE     38     90     43     86     79
D245V2, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             2              86
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASC3 MUTATED        0      5      2      0      3
  CASC3 WILD-TYPE     26     74     71     82     55
D245V3, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             5              74
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC3 MUTATED        3      2      5      0
  CASC3 WILD-TYPE    124     49     66     69
D245V4, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             2              49
  CLUS_3             5              66
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASC3 MUTATED        1      2      5      1      2
  CASC3 WILD-TYPE     83     83     80     68     45
D245V5, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC3 MUTATED        1      3      1      6
  CASC3 WILD-TYPE     94     71    120     74
D245V6, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             3              71
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASC3 MUTATED        3      0      2      4      0      2
  CASC3 WILD-TYPE     49     64     70    100     40     57
D245V7, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             0              64
  CLUS_3             2              70
  CLUS_4             4             100
  CLUS_5             0              40
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASC3 MUTATED        8      1      2
  CASC3 WILD-TYPE    209     74     97
D245V8, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASC3 MUTATED        5      4      1
  CASC3 WILD-TYPE    116    104     71
D245V9, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             4             104
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASC3 MUTATED        5      1      0      2      2
  CASC3 WILD-TYPE     83     65     45     53     45
D245V10, multiclass
        clus
vv       CASC3 MUTATED CASC3 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             2              53
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(246) Variable = CCDC153 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC153 MUTATED        1      6      0      0
  CCDC153 WILD-TYPE    203    131     47      3
D246V1, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               6               131
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC153 MUTATED        1      4      0      1      1
  CCDC153 WILD-TYPE     38     92     44     87     79
D246V2, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               4                92
  CLUS_3               0                44
  CLUS_4               1                87
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC153 MUTATED        1      3      1      1      0
  CCDC153 WILD-TYPE     25     76     72     81     58
D246V3, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                76
  CLUS_3               1                72
  CLUS_4               1                81
  CLUS_5               0                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC153 MUTATED        2      1      2      1
  CCDC153 WILD-TYPE    125     50     69     68
D246V4, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               1                50
  CLUS_3               2                69
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC153 MUTATED        0      1      3      0      2
  CCDC153 WILD-TYPE     84     84     82     69     45
D246V5, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               3                82
  CLUS_4               0                69
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC153 MUTATED        0      2      1      3
  CCDC153 WILD-TYPE     95     72    120     77
D246V6, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               0                95
  CLUS_2               2                72
  CLUS_3               1               120
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC153 MUTATED        1      2      2      1      1      0
  CCDC153 WILD-TYPE     51     62     70    103     39     59
D246V7, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               2                62
  CLUS_3               2                70
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC153 MUTATED        4      2      1
  CCDC153 WILD-TYPE    213     73     98
D246V8, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               4               213
  CLUS_2               2                73
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC153 MUTATED        0      1      6
  CCDC153 WILD-TYPE    121    107     66
D246V9, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               0               121
  CLUS_2               1               107
  CLUS_3               6                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC153 MUTATED        1      1      2      0      3
  CCDC153 WILD-TYPE     87     65     43     55     44
D246V10, multiclass
        clus
vv       CCDC153 MUTATED CCDC153 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(247) Variable = SF3B3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B3 MUTATED       10      9      1      0
  SF3B3 WILD-TYPE    194    128     46      3
D247V1, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1            10             194
  CLUS_2             9             128
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF3B3 MUTATED        4      7      1      5      0
  SF3B3 WILD-TYPE     35     89     43     83     80
D247V2, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             4              35
  CLUS_2             7              89
  CLUS_3             1              43
  CLUS_4             5              83
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF3B3 MUTATED        1      6      6      1      3
  SF3B3 WILD-TYPE     25     73     67     81     55
D247V3, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             6              73
  CLUS_3             6              67
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B3 MUTATED        7      6      2      2
  SF3B3 WILD-TYPE    120     45     69     67
D247V4, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             7             120
  CLUS_2             6              45
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF3B3 MUTATED        5      5      5      2      3
  SF3B3 WILD-TYPE     79     80     80     67     44
D247V5, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             5              79
  CLUS_2             5              80
  CLUS_3             5              80
  CLUS_4             2              67
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B3 MUTATED        5      3      5      7
  SF3B3 WILD-TYPE     90     71    116     73
D247V6, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             3              71
  CLUS_3             5             116
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SF3B3 MUTATED        5      2      4      5      0      4
  SF3B3 WILD-TYPE     47     62     68     99     40     55
D247V7, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             2              62
  CLUS_3             4              68
  CLUS_4             5              99
  CLUS_5             0              40
  CLUS_6             4              55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B3 MUTATED       13      1      6
  SF3B3 WILD-TYPE    204     74     93
D247V8, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1            13             204
  CLUS_2             1              74
  CLUS_3             6              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B3 MUTATED        8      3      2
  SF3B3 WILD-TYPE    113    105     70
D247V9, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             8             113
  CLUS_2             3             105
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF3B3 MUTATED        5      0      1      3      4
  SF3B3 WILD-TYPE     83     66     44     52     43
D247V10, multiclass
        clus
vv       SF3B3 MUTATED SF3B3 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             3              52
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(248) Variable = MLL3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED       18     30      3      1
  MLL3 WILD-TYPE    186    107     44      2
D248V1, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           18            186
  CLUS_2           30            107
  CLUS_3            3             44
  CLUS_4            1              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL3 MUTATED        4     25      4      1      4
  MLL3 WILD-TYPE     35     71     40     87     76
D248V2, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            4             35
  CLUS_2           25             71
  CLUS_3            4             40
  CLUS_4            1             87
  CLUS_5            4             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL3 MUTATED        5     14     11      4      9
  MLL3 WILD-TYPE     21     65     62     78     49
D248V3, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            5             21
  CLUS_2           14             65
  CLUS_3           11             62
  CLUS_4            4             78
  CLUS_5            9             49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED       15     14      8      6
  MLL3 WILD-TYPE    112     37     63     63
D248V4, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           15            112
  CLUS_2           14             37
  CLUS_3            8             63
  CLUS_4            6             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL3 MUTATED        5      7     19     12      8
  MLL3 WILD-TYPE     79     78     66     57     39
D248V5, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1            5             79
  CLUS_2            7             78
  CLUS_3           19             66
  CLUS_4           12             57
  CLUS_5            8             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLL3 MUTATED       18      6     10     17
  MLL3 WILD-TYPE     77     68    111     63
D248V6, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           18             77
  CLUS_2            6             68
  CLUS_3           10            111
  CLUS_4           17             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLL3 MUTATED       12     12     14      8      3      3
  MLL3 WILD-TYPE     40     52     58     96     37     56
D248V7, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           12             40
  CLUS_2           12             52
  CLUS_3           14             58
  CLUS_4            8             96
  CLUS_5            3             37
  CLUS_6            3             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED       42      4      6
  MLL3 WILD-TYPE    175     71     93
D248V8, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           42            175
  CLUS_2            4             71
  CLUS_3            6             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLL3 MUTATED       20      6      6
  MLL3 WILD-TYPE    101    102     66
D248V9, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           20            101
  CLUS_2            6            102
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLL3 MUTATED       15      1      2      3     11
  MLL3 WILD-TYPE     73     65     43     52     36
D248V10, multiclass
        clus
vv       MLL3 MUTATED MLL3 WILD-TYPE
  CLUS_1           15             73
  CLUS_2            1             65
  CLUS_3            2             43
  CLUS_4            3             52
  CLUS_5           11             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(249) Variable = CA2 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CA2 MUTATED        1      4      2      0
  CA2 WILD-TYPE    203    133     45      3
D249V1, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           1           203
  CLUS_2           4           133
  CLUS_3           2            45
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CA2 MUTATED        1      6      0      0      0
  CA2 WILD-TYPE     38     90     44     88     80
D249V2, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           1            38
  CLUS_2           6            90
  CLUS_3           0            44
  CLUS_4           0            88
  CLUS_5           0            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CA2 MUTATED        0      0      4      0      3
  CA2 WILD-TYPE     26     79     69     82     55
D249V3, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           0            26
  CLUS_2           0            79
  CLUS_3           4            69
  CLUS_4           0            82
  CLUS_5           3            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CA2 MUTATED        1      5      0      1
  CA2 WILD-TYPE    126     46     71     68
D249V4, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           1           126
  CLUS_2           5            46
  CLUS_3           0            71
  CLUS_4           1            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CA2 MUTATED        0      1      3      1      2
  CA2 WILD-TYPE     84     84     82     68     45
D249V5, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           0            84
  CLUS_2           1            84
  CLUS_3           3            82
  CLUS_4           1            68
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CA2 MUTATED        1      1      0      5
  CA2 WILD-TYPE     94     73    121     75
D249V6, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           1            94
  CLUS_2           1            73
  CLUS_3           0           121
  CLUS_4           5            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CA2 MUTATED        2      0      2      2      1      0
  CA2 WILD-TYPE     50     64     70    102     39     59
D249V7, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           2            50
  CLUS_2           0            64
  CLUS_3           2            70
  CLUS_4           2           102
  CLUS_5           1            39
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CA2 MUTATED        6      1      0
  CA2 WILD-TYPE    211     74     99
D249V8, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           6           211
  CLUS_2           1            74
  CLUS_3           0            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CA2 MUTATED        4      1      2
  CA2 WILD-TYPE    117    107     70
D249V9, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           4           117
  CLUS_2           1           107
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CA2 MUTATED        1      1      0      0      5
  CA2 WILD-TYPE     87     65     45     55     42
D249V10, multiclass
        clus
vv       CA2 MUTATED CA2 WILD-TYPE
  CLUS_1           1            87
  CLUS_2           1            65
  CLUS_3           0            45
  CLUS_4           0            55
  CLUS_5           5            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(250) Variable = CNBD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNBD1 MUTATED       13      5      0      0
  CNBD1 WILD-TYPE    191    132     47      3
D250V1, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1            13             191
  CLUS_2             5             132
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNBD1 MUTATED        1      9      0      5      0
  CNBD1 WILD-TYPE     38     87     44     83     80
D250V2, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             9              87
  CLUS_3             0              44
  CLUS_4             5              83
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNBD1 MUTATED        2      2      5      2      5
  CNBD1 WILD-TYPE     24     77     68     80     53
D250V3, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              77
  CLUS_3             5              68
  CLUS_4             2              80
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNBD1 MUTATED        7      4      2      3
  CNBD1 WILD-TYPE    120     47     69     66
D250V4, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             7             120
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNBD1 MUTATED        8      1      6      0      3
  CNBD1 WILD-TYPE     76     84     79     69     44
D250V5, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             8              76
  CLUS_2             1              84
  CLUS_3             6              79
  CLUS_4             0              69
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNBD1 MUTATED        2      2     10      4
  CNBD1 WILD-TYPE     93     72    111     76
D250V6, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3            10             111
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNBD1 MUTATED        5      1      2      1      2      7
  CNBD1 WILD-TYPE     47     63     70    103     38     52
D250V7, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             1              63
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             2              38
  CLUS_6             7              52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNBD1 MUTATED        8      2      8
  CNBD1 WILD-TYPE    209     73     91
D250V8, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             2              73
  CLUS_3             8              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNBD1 MUTATED        8      2      4
  CNBD1 WILD-TYPE    113    106     68
D250V9, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             8             113
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNBD1 MUTATED        4      0      2      2      6
  CNBD1 WILD-TYPE     84     66     43     53     41
D250V10, multiclass
        clus
vv       CNBD1 MUTATED CNBD1 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             2              53
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(251) Variable = DNAH7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH7 MUTATED       17     26      9      0
  DNAH7 WILD-TYPE    187    111     38      3
D251V1, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1            17             187
  CLUS_2            26             111
  CLUS_3             9              38
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH7 MUTATED        4     19      5      8      6
  DNAH7 WILD-TYPE     35     77     39     80     74
D251V2, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             4              35
  CLUS_2            19              77
  CLUS_3             5              39
  CLUS_4             8              80
  CLUS_5             6              74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH7 MUTATED        6     12     10      8      8
  DNAH7 WILD-TYPE     20     67     63     74     50
D251V3, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             6              20
  CLUS_2            12              67
  CLUS_3            10              63
  CLUS_4             8              74
  CLUS_5             8              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH7 MUTATED       18     12      8      6
  DNAH7 WILD-TYPE    109     39     63     63
D251V4, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1            18             109
  CLUS_2            12              39
  CLUS_3             8              63
  CLUS_4             6              63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH7 MUTATED        7      6     20      6     10
  DNAH7 WILD-TYPE     77     79     65     63     37
D251V5, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1             7              77
  CLUS_2             6              79
  CLUS_3            20              65
  CLUS_4             6              63
  CLUS_5            10              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAH7 MUTATED       12      6     10     21
  DNAH7 WILD-TYPE     83     68    111     59
D251V6, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1            12              83
  CLUS_2             6              68
  CLUS_3            10             111
  CLUS_4            21              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNAH7 MUTATED       13     16      8      9      2      4
  DNAH7 WILD-TYPE     39     48     64     95     38     55
D251V7, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1            13              39
  CLUS_2            16              48
  CLUS_3             8              64
  CLUS_4             9              95
  CLUS_5             2              38
  CLUS_6             4              55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED       39      4      9
  DNAH7 WILD-TYPE    178     71     90
D251V8, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1            39             178
  CLUS_2             4              71
  CLUS_3             9              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DNAH7 MUTATED       18      8     11
  DNAH7 WILD-TYPE    103    100     61
D251V9, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1            18             103
  CLUS_2             8             100
  CLUS_3            11              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAH7 MUTATED       12      2      7      2     14
  DNAH7 WILD-TYPE     76     64     38     53     33
D251V10, multiclass
        clus
vv       DNAH7 MUTATED DNAH7 WILD-TYPE
  CLUS_1            12              76
  CLUS_2             2              64
  CLUS_3             7              38
  CLUS_4             2              53
  CLUS_5            14              33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(252) Variable = ASB11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASB11 MUTATED        0      9      0      0
  ASB11 WILD-TYPE    204    128     47      3
D252V1, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             9             128
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASB11 MUTATED        3      4      1      0      1
  ASB11 WILD-TYPE     36     92     43     88     79
D252V2, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASB11 MUTATED        1      3      2      1      3
  ASB11 WILD-TYPE     25     76     71     81     55
D252V3, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASB11 MUTATED        2      5      3      0
  ASB11 WILD-TYPE    125     46     68     69
D252V4, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             5              46
  CLUS_3             3              68
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASB11 MUTATED        0      1      5      1      3
  ASB11 WILD-TYPE     84     84     80     68     44
D252V5, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASB11 MUTATED        2      1      1      6
  ASB11 WILD-TYPE     93     73    120     74
D252V6, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASB11 MUTATED        3      6      0      1      0      0
  ASB11 WILD-TYPE     49     58     72    103     40     59
D252V7, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             6              58
  CLUS_3             0              72
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASB11 MUTATED        9      0      1
  ASB11 WILD-TYPE    208     75     98
D252V8, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASB11 MUTATED        4      0      5
  ASB11 WILD-TYPE    117    108     67
D252V9, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             0             108
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASB11 MUTATED        2      0      4      0      3
  ASB11 WILD-TYPE     86     66     41     55     44
D252V10, multiclass
        clus
vv       ASB11 MUTATED ASB11 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(253) Variable = CDC14A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC14A MUTATED        2     12      1      0
  CDC14A WILD-TYPE    202    125     46      3
D253V1, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              2              202
  CLUS_2             12              125
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC14A MUTATED        0      8      2      0      1
  CDC14A WILD-TYPE     39     88     42     88     79
D253V2, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              0               39
  CLUS_2              8               88
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC14A MUTATED        1      2      6      0      3
  CDC14A WILD-TYPE     25     77     67     82     55
D253V3, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               77
  CLUS_3              6               67
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC14A MUTATED        4      7      1      0
  CDC14A WILD-TYPE    123     44     70     69
D253V4, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              4              123
  CLUS_2              7               44
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC14A MUTATED        0      2      7      1      5
  CDC14A WILD-TYPE     84     83     78     68     42
D253V5, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              7               78
  CLUS_4              1               68
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC14A MUTATED        1      1      2     11
  CDC14A WILD-TYPE     94     73    119     69
D253V6, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              1               94
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4             11               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC14A MUTATED        7      7      1      0      0      0
  CDC14A WILD-TYPE     45     57     71    104     40     59
D253V7, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              7               45
  CLUS_2              7               57
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDC14A MUTATED       15      0      0
  CDC14A WILD-TYPE    202     75     99
D253V8, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1             15              202
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDC14A MUTATED        7      0      3
  CDC14A WILD-TYPE    114    108     69
D253V9, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              7              114
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC14A MUTATED        3      0      2      0      5
  CDC14A WILD-TYPE     85     66     43     55     42
D253V10, multiclass
        clus
vv       CDC14A MUTATED CDC14A WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(254) Variable = NHLRC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHLRC1 MUTATED        1     10      1      0
  NHLRC1 WILD-TYPE    203    127     46      3
D254V1, multiclass
        clus
vv       NHLRC1 MUTATED NHLRC1 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             10              127
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NHLRC1 MUTATED        1      5      1      1      0
  NHLRC1 WILD-TYPE     38     91     43     87     80
D254V2, multiclass
        clus
vv       NHLRC1 MUTATED NHLRC1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NHLRC1 MUTATED        0      3      5      1      2
  NHLRC1 WILD-TYPE     26     76     68     81     56
D254V3, multiclass
        clus
vv       NHLRC1 MUTATED NHLRC1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              5               68
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHLRC1 MUTATED        4      4      2      1
  NHLRC1 WILD-TYPE    123     47     69     68
D254V4, multiclass
        clus
vv       NHLRC1 MUTATED NHLRC1 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              4               47
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NHLRC1 MUTATED        1      2      7      1      0
  NHLRC1 WILD-TYPE     83     83     78     68     47
D254V5, multiclass
        clus
vv       NHLRC1 MUTATED NHLRC1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              7               78
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHLRC1 MUTATED        2      3      1      5
  NHLRC1 WILD-TYPE     93     71    120     75
D254V6, multiclass
        clus
vv       NHLRC1 MUTATED NHLRC1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              3               71
  CLUS_3              1              120
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NHLRC1 MUTATED        2      6      0      3      0      1
  NHLRC1 WILD-TYPE     50     58     72    101     40     58
D254V7, multiclass
        clus
vv       NHLRC1 MUTATED NHLRC1 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              6               58
  CLUS_3              0               72
  CLUS_4              3              101
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NHLRC1 MUTATED        8      2      2
  NHLRC1 WILD-TYPE    209     73     97
D254V8, multiclass
        clus
vv       NHLRC1 MUTATED NHLRC1 WILD-TYPE
  CLUS_1              8              209
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NHLRC1 MUTATED        3      1      3
  NHLRC1 WILD-TYPE    118    107     69
D254V9, multiclass
        clus
vv       NHLRC1 MUTATED NHLRC1 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NHLRC1 MUTATED        2      1      2      1      1
  NHLRC1 WILD-TYPE     86     65     43     54     46
D254V10, multiclass
        clus
vv       NHLRC1 MUTATED NHLRC1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(255) Variable = ZC3H18 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H18 MUTATED        4     12      3      0
  ZC3H18 WILD-TYPE    200    125     44      3
D255V1, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              4              200
  CLUS_2             12              125
  CLUS_3              3               44
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H18 MUTATED        1      8      2      3      1
  ZC3H18 WILD-TYPE     38     88     42     85     79
D255V2, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              8               88
  CLUS_3              2               42
  CLUS_4              3               85
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H18 MUTATED        0      8      2      0      4
  ZC3H18 WILD-TYPE     26     71     71     82     54
D255V3, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              8               71
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H18 MUTATED        3      4      6      1
  ZC3H18 WILD-TYPE    124     47     65     68
D255V4, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              4               47
  CLUS_3              6               65
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H18 MUTATED        2      3      6      4      3
  ZC3H18 WILD-TYPE     82     82     79     65     44
D255V5, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              3               82
  CLUS_3              6               79
  CLUS_4              4               65
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H18 MUTATED        6      3      2      7
  ZC3H18 WILD-TYPE     89     71    119     73
D255V6, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              6               89
  CLUS_2              3               71
  CLUS_3              2              119
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H18 MUTATED        4      8      4      2      2      0
  ZC3H18 WILD-TYPE     48     56     68    102     38     59
D255V7, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              8               56
  CLUS_3              4               68
  CLUS_4              2              102
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H18 MUTATED       15      1      4
  ZC3H18 WILD-TYPE    202     74     95
D255V8, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1             15              202
  CLUS_2              1               74
  CLUS_3              4               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H18 MUTATED        5      2      7
  ZC3H18 WILD-TYPE    116    106     65
D255V9, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              2              106
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H18 MUTATED        3      1      3      1      6
  ZC3H18 WILD-TYPE     85     65     42     54     41
D255V10, multiclass
        clus
vv       ZC3H18 MUTATED ZC3H18 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              3               42
  CLUS_4              1               54
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(256) Variable = RGS9BP MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS9BP MUTATED        2      6      0      0
  RGS9BP WILD-TYPE    202    131     47      3
D256V1, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              2              202
  CLUS_2              6              131
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS9BP MUTATED        0      5      0      2      0
  RGS9BP WILD-TYPE     39     91     44     86     80
D256V2, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              0               44
  CLUS_4              2               86
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS9BP MUTATED        0      1      3      2      0
  RGS9BP WILD-TYPE     26     78     70     80     58
D256V3, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              3               70
  CLUS_4              2               80
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS9BP MUTATED        2      1      1      2
  RGS9BP WILD-TYPE    125     50     70     67
D256V4, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              2              125
  CLUS_2              1               50
  CLUS_3              1               70
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS9BP MUTATED        1      2      3      1      1
  RGS9BP WILD-TYPE     83     83     82     68     46
D256V5, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              3               82
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS9BP MUTATED        1      4      1      2
  RGS9BP WILD-TYPE     94     70    120     78
D256V6, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              1               94
  CLUS_2              4               70
  CLUS_3              1              120
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RGS9BP MUTATED        3      1      0      2      1      1
  RGS9BP WILD-TYPE     49     63     72    102     39     58
D256V7, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              3               49
  CLUS_2              1               63
  CLUS_3              0               72
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RGS9BP MUTATED        4      2      2
  RGS9BP WILD-TYPE    213     73     97
D256V8, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              4              213
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RGS9BP MUTATED        3      2      1
  RGS9BP WILD-TYPE    118    106     71
D256V9, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              3              118
  CLUS_2              2              106
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS9BP MUTATED        1      1      0      1      3
  RGS9BP WILD-TYPE     87     65     45     54     44
D256V10, multiclass
        clus
vv       RGS9BP MUTATED RGS9BP WILD-TYPE
  CLUS_1              1               87
  CLUS_2              1               65
  CLUS_3              0               45
  CLUS_4              1               54
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(257) Variable = GLYR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLYR1 MUTATED        3     12      0      0
  GLYR1 WILD-TYPE    201    125     47      3
D257V1, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            12             125
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLYR1 MUTATED        2      7      1      1      1
  GLYR1 WILD-TYPE     37     89     43     87     79
D257V2, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             7              89
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLYR1 MUTATED        0      7      3      0      3
  GLYR1 WILD-TYPE     26     72     70     82     55
D257V3, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             7              72
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLYR1 MUTATED        1      6      5      1
  GLYR1 WILD-TYPE    126     45     66     68
D257V4, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             6              45
  CLUS_3             5              66
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLYR1 MUTATED        0      3      6      3      2
  GLYR1 WILD-TYPE     84     82     79     66     45
D257V5, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             6              79
  CLUS_4             3              66
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLYR1 MUTATED        4      3      0      7
  GLYR1 WILD-TYPE     91     71    121     73
D257V6, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             3              71
  CLUS_3             0             121
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLYR1 MUTATED        4      5      3      1      1      1
  GLYR1 WILD-TYPE     48     59     69    103     39     58
D257V7, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             5              59
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GLYR1 MUTATED       12      0      3
  GLYR1 WILD-TYPE    205     75     96
D257V8, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             0              75
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GLYR1 MUTATED        6      2      2
  GLYR1 WILD-TYPE    115    106     70
D257V9, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLYR1 MUTATED        3      0      1      1      5
  GLYR1 WILD-TYPE     85     66     44     54     42
D257V10, multiclass
        clus
vv       GLYR1 MUTATED GLYR1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(258) Variable = FILIP1L MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FILIP1L MUTATED        5     14      2      0
  FILIP1L WILD-TYPE    199    123     45      3
D258V1, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               5               199
  CLUS_2              14               123
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FILIP1L MUTATED        3      9      2      2      0
  FILIP1L WILD-TYPE     36     87     42     86     80
D258V2, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               3                36
  CLUS_2               9                87
  CLUS_3               2                42
  CLUS_4               2                86
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FILIP1L MUTATED        2      6      6      0      5
  FILIP1L WILD-TYPE     24     73     67     82     53
D258V3, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               2                24
  CLUS_2               6                73
  CLUS_3               6                67
  CLUS_4               0                82
  CLUS_5               5                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FILIP1L MUTATED        4     11      3      1
  FILIP1L WILD-TYPE    123     40     68     68
D258V4, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               4               123
  CLUS_2              11                40
  CLUS_3               3                68
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FILIP1L MUTATED        3      4     10      1      2
  FILIP1L WILD-TYPE     81     81     75     68     45
D258V5, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               3                81
  CLUS_2               4                81
  CLUS_3              10                75
  CLUS_4               1                68
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FILIP1L MUTATED        7      2      3      8
  FILIP1L WILD-TYPE     88     72    118     72
D258V6, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               7                88
  CLUS_2               2                72
  CLUS_3               3               118
  CLUS_4               8                72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FILIP1L MUTATED        1      8      3      4      2      3
  FILIP1L WILD-TYPE     51     56     69    100     38     56
D258V7, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               1                51
  CLUS_2               8                56
  CLUS_3               3                69
  CLUS_4               4               100
  CLUS_5               2                38
  CLUS_6               3                56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FILIP1L MUTATED       16      1      4
  FILIP1L WILD-TYPE    201     74     95
D258V8, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1              16               201
  CLUS_2               1                74
  CLUS_3               4                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FILIP1L MUTATED        7      4      5
  FILIP1L WILD-TYPE    114    104     67
D258V9, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               7               114
  CLUS_2               4               104
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FILIP1L MUTATED        8      1      2      1      4
  FILIP1L WILD-TYPE     80     65     43     54     43
D258V10, multiclass
        clus
vv       FILIP1L MUTATED FILIP1L WILD-TYPE
  CLUS_1               8                80
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               1                54
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(259) Variable = USP26 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP26 MUTATED        4     18      0      0
  USP26 WILD-TYPE    200    119     47      3
D259V1, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            18             119
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP26 MUTATED        1     10      3      3      1
  USP26 WILD-TYPE     38     86     41     85     79
D259V2, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             1              38
  CLUS_2            10              86
  CLUS_3             3              41
  CLUS_4             3              85
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP26 MUTATED        0      7      4      3      4
  USP26 WILD-TYPE     26     72     69     79     54
D259V3, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             7              72
  CLUS_3             4              69
  CLUS_4             3              79
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP26 MUTATED        5      5      6      2
  USP26 WILD-TYPE    122     46     65     67
D259V4, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             5              46
  CLUS_3             6              65
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP26 MUTATED        3      6     10      1      0
  USP26 WILD-TYPE     81     79     75     68     47
D259V5, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             6              79
  CLUS_3            10              75
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP26 MUTATED        4      4      3      9
  USP26 WILD-TYPE     91     70    118     71
D259V6, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             4              70
  CLUS_3             3             118
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP26 MUTATED        4      5      3      8      1      1
  USP26 WILD-TYPE     48     59     69     96     39     58
D259V7, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             5              59
  CLUS_3             3              69
  CLUS_4             8              96
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP26 MUTATED       13      5      4
  USP26 WILD-TYPE    204     70     95
D259V8, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1            13             204
  CLUS_2             5              70
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP26 MUTATED        5      6      6
  USP26 WILD-TYPE    116    102     66
D259V9, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             6             102
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP26 MUTATED        5      5      3      1      3
  USP26 WILD-TYPE     83     61     42     54     44
D259V10, multiclass
        clus
vv       USP26 MUTATED USP26 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             5              61
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(260) Variable = VPS13B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13B MUTATED       13     32      4      0
  VPS13B WILD-TYPE    191    105     43      3
D260V1, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1             13              191
  CLUS_2             32              105
  CLUS_3              4               43
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS13B MUTATED        4     21      5      5      5
  VPS13B WILD-TYPE     35     75     39     83     75
D260V2, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1              4               35
  CLUS_2             21               75
  CLUS_3              5               39
  CLUS_4              5               83
  CLUS_5              5               75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS13B MUTATED        3     14      7      5     10
  VPS13B WILD-TYPE     23     65     66     77     48
D260V3, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1              3               23
  CLUS_2             14               65
  CLUS_3              7               66
  CLUS_4              5               77
  CLUS_5             10               48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13B MUTATED       11     14      8      6
  VPS13B WILD-TYPE    116     37     63     63
D260V4, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1             11              116
  CLUS_2             14               37
  CLUS_3              8               63
  CLUS_4              6               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS13B MUTATED        6      5     23      9      4
  VPS13B WILD-TYPE     78     80     62     60     43
D260V5, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1              6               78
  CLUS_2              5               80
  CLUS_3             23               62
  CLUS_4              9               60
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13B MUTATED       14      7      9     17
  VPS13B WILD-TYPE     81     67    112     63
D260V6, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1             14               81
  CLUS_2              7               67
  CLUS_3              9              112
  CLUS_4             17               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VPS13B MUTATED       10     16      7      7      6      3
  VPS13B WILD-TYPE     42     48     65     97     34     56
D260V7, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1             10               42
  CLUS_2             16               48
  CLUS_3              7               65
  CLUS_4              7               97
  CLUS_5              6               34
  CLUS_6              3               56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS13B MUTATED       35      5      9
  VPS13B WILD-TYPE    182     70     90
D260V8, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1             35              182
  CLUS_2              5               70
  CLUS_3              9               90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS13B MUTATED       16      7     11
  VPS13B WILD-TYPE    105    101     61
D260V9, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1             16              105
  CLUS_2              7              101
  CLUS_3             11               61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS13B MUTATED       13      1      7      4      9
  VPS13B WILD-TYPE     75     65     38     51     38
D260V10, multiclass
        clus
vv       VPS13B MUTATED VPS13B WILD-TYPE
  CLUS_1             13               75
  CLUS_2              1               65
  CLUS_3              7               38
  CLUS_4              4               51
  CLUS_5              9               38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(261) Variable = RCOR3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR3 MUTATED        1     12      0      0
  RCOR3 WILD-TYPE    203    125     47      3
D261V1, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            12             125
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RCOR3 MUTATED        2      8      2      0      0
  RCOR3 WILD-TYPE     37     88     42     88     80
D261V2, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             8              88
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RCOR3 MUTATED        1      4      3      0      5
  RCOR3 WILD-TYPE     25     75     70     82     53
D261V3, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR3 MUTATED        1      9      2      1
  RCOR3 WILD-TYPE    126     42     69     68
D261V4, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             9              42
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RCOR3 MUTATED        1      2      7      1      1
  RCOR3 WILD-TYPE     83     83     78     68     46
D261V5, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             7              78
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RCOR3 MUTATED        2      2      1      7
  RCOR3 WILD-TYPE     93     72    120     73
D261V6, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RCOR3 MUTATED        4      5      1      3      1      0
  RCOR3 WILD-TYPE     48     59     71    101     39     59
D261V7, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             5              59
  CLUS_3             1              71
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCOR3 MUTATED       12      2      0
  RCOR3 WILD-TYPE    205     73     99
D261V8, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             2              73
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RCOR3 MUTATED        6      2      4
  RCOR3 WILD-TYPE    115    106     68
D261V9, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RCOR3 MUTATED        4      2      2      0      4
  RCOR3 WILD-TYPE     84     64     43     55     43
D261V10, multiclass
        clus
vv       RCOR3 MUTATED RCOR3 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             2              64
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(262) Variable = CASD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASD1 MUTATED        1      8      3      0
  CASD1 WILD-TYPE    203    129     44      3
D262V1, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             8             129
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASD1 MUTATED        0      9      0      0      0
  CASD1 WILD-TYPE     39     87     44     88     80
D262V2, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             9              87
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASD1 MUTATED        0      4      4      0      3
  CASD1 WILD-TYPE     26     75     69     82     55
D262V3, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASD1 MUTATED        1      6      4      0
  CASD1 WILD-TYPE    126     45     67     69
D262V4, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             6              45
  CLUS_3             4              67
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASD1 MUTATED        0      0      6      1      4
  CASD1 WILD-TYPE     84     85     79     68     43
D262V5, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASD1 MUTATED        4      1      0      6
  CASD1 WILD-TYPE     91     73    121     74
D262V6, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASD1 MUTATED        3      4      4      0      0      1
  CASD1 WILD-TYPE     49     60     68    104     40     58
D262V7, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             4              60
  CLUS_3             4              68
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASD1 MUTATED       10      0      2
  CASD1 WILD-TYPE    207     75     97
D262V8, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASD1 MUTATED        2      0      5
  CASD1 WILD-TYPE    119    108     67
D262V9, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASD1 MUTATED        1      0      2      0      4
  CASD1 WILD-TYPE     87     66     43     55     43
D262V10, multiclass
        clus
vv       CASD1 MUTATED CASD1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(263) Variable = CDC25C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC25C MUTATED        2      8      1      0
  CDC25C WILD-TYPE    202    129     46      3
D263V1, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              2              202
  CLUS_2              8              129
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC25C MUTATED        3      5      2      0      0
  CDC25C WILD-TYPE     36     91     42     88     80
D263V2, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              3               36
  CLUS_2              5               91
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC25C MUTATED        0      4      3      0      2
  CDC25C WILD-TYPE     26     75     70     82     56
D263V3, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC25C MUTATED        2      4      3      0
  CDC25C WILD-TYPE    125     47     68     69
D263V4, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              2              125
  CLUS_2              4               47
  CLUS_3              3               68
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC25C MUTATED        1      4      4      1      0
  CDC25C WILD-TYPE     83     81     81     68     47
D263V5, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              1               83
  CLUS_2              4               81
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC25C MUTATED        3      2      0      5
  CDC25C WILD-TYPE     92     72    121     75
D263V6, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              3               92
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC25C MUTATED        2      2      2      5      0      0
  CDC25C WILD-TYPE     50     62     70     99     40     59
D263V7, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              2               50
  CLUS_2              2               62
  CLUS_3              2               70
  CLUS_4              5               99
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDC25C MUTATED        8      2      1
  CDC25C WILD-TYPE    209     73     98
D263V8, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              8              209
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CDC25C MUTATED        4      2      2
  CDC25C WILD-TYPE    117    106     70
D263V9, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              4              117
  CLUS_2              2              106
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC25C MUTATED        3      1      1      1      2
  CDC25C WILD-TYPE     85     65     44     54     45
D263V10, multiclass
        clus
vv       CDC25C MUTATED CDC25C WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(264) Variable = BCL9L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9L MUTATED        5     19      1      1
  BCL9L WILD-TYPE    199    118     46      2
D264V1, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             5             199
  CLUS_2            19             118
  CLUS_3             1              46
  CLUS_4             1               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL9L MUTATED        3     14      2      2      1
  BCL9L WILD-TYPE     36     82     42     86     79
D264V2, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             3              36
  CLUS_2            14              82
  CLUS_3             2              42
  CLUS_4             2              86
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL9L MUTATED        4     11      5      0      4
  BCL9L WILD-TYPE     22     68     68     82     54
D264V3, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             4              22
  CLUS_2            11              68
  CLUS_3             5              68
  CLUS_4             0              82
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9L MUTATED        7     12      5      0
  BCL9L WILD-TYPE    120     39     66     69
D264V4, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             7             120
  CLUS_2            12              39
  CLUS_3             5              66
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL9L MUTATED        1      4     12      2      4
  BCL9L WILD-TYPE     83     81     73     67     43
D264V5, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             1              83
  CLUS_2             4              81
  CLUS_3            12              73
  CLUS_4             2              67
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCL9L MUTATED        3      2      4     14
  BCL9L WILD-TYPE     92     72    117     66
D264V6, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             4             117
  CLUS_4            14              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCL9L MUTATED        6      8      6      4      1      1
  BCL9L WILD-TYPE     46     56     66    100     39     58
D264V7, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             6              46
  CLUS_2             8              56
  CLUS_3             6              66
  CLUS_4             4             100
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCL9L MUTATED       22      2      2
  BCL9L WILD-TYPE    195     73     97
D264V8, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1            22             195
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BCL9L MUTATED        5      6      9
  BCL9L WILD-TYPE    116    102     63
D264V9, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             5             116
  CLUS_2             6             102
  CLUS_3             9              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCL9L MUTATED        9      2      3      1      5
  BCL9L WILD-TYPE     79     64     42     54     42
D264V10, multiclass
        clus
vv       BCL9L MUTATED BCL9L WILD-TYPE
  CLUS_1             9              79
  CLUS_2             2              64
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(265) Variable = TNFSF10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFSF10 MUTATED        2      4      2      0
  TNFSF10 WILD-TYPE    202    133     45      3
D265V1, multiclass
        clus
vv       TNFSF10 MUTATED TNFSF10 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               4               133
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFSF10 MUTATED        0      3      1      1      0
  TNFSF10 WILD-TYPE     39     93     43     87     80
D265V2, multiclass
        clus
vv       TNFSF10 MUTATED TNFSF10 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFSF10 MUTATED        0      4      1      0      2
  TNFSF10 WILD-TYPE     26     75     72     82     56
D265V3, multiclass
        clus
vv       TNFSF10 MUTATED TNFSF10 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               4                75
  CLUS_3               1                72
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFSF10 MUTATED        1      4      2      0
  TNFSF10 WILD-TYPE    126     47     69     69
D265V4, multiclass
        clus
vv       TNFSF10 MUTATED TNFSF10 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               4                47
  CLUS_3               2                69
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFSF10 MUTATED        0      0      4      0      2
  TNFSF10 WILD-TYPE     84     85     81     69     45
D265V5, multiclass
        clus
vv       TNFSF10 MUTATED TNFSF10 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               4                81
  CLUS_4               0                69
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFSF10 MUTATED        2      0      0      4
  TNFSF10 WILD-TYPE     93     74    121     76
D265V6, multiclass
        clus
vv       TNFSF10 MUTATED TNFSF10 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               0                74
  CLUS_3               0               121
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNFSF10 MUTATED        2      4      2      0      0      0
  TNFSF10 WILD-TYPE     50     60     70    104     40     59
D265V7, multiclass
        clus
vv       TNFSF10 MUTATED TNFSF10 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               4                60
  CLUS_3               2                70
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFSF10 MUTATED        6      0      2
  TNFSF10 WILD-TYPE    211     75     97
D265V8, multiclass
        clus
vv       TNFSF10 MUTATED TNFSF10 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               0                75
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFSF10 MUTATED        2      0      2
  TNFSF10 WILD-TYPE    119    108     70
D265V9, multiclass
        clus
vv       TNFSF10 MUTATED TNFSF10 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               0               108
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFSF10 MUTATED        0      0      1      0      3
  TNFSF10 WILD-TYPE     88     66     44     55     44
D265V10, multiclass
        clus
vv       TNFSF10 MUTATED TNFSF10 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(266) Variable = PIK3R3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R3 MUTATED        2      4      2      0
  PIK3R3 WILD-TYPE    202    133     45      3
D266V1, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              4              133
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3R3 MUTATED        2      3      1      0      0
  PIK3R3 WILD-TYPE     37     93     43     88     80
D266V2, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              3               93
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3R3 MUTATED        0      2      1      2      2
  PIK3R3 WILD-TYPE     26     77     72     80     56
D266V3, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              1               72
  CLUS_4              2               80
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R3 MUTATED        3      1      2      1
  PIK3R3 WILD-TYPE    124     50     69     68
D266V4, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              1               50
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3R3 MUTATED        0      2      5      1      0
  PIK3R3 WILD-TYPE     84     83     80     68     47
D266V5, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              5               80
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R3 MUTATED        1      1      2      4
  PIK3R3 WILD-TYPE     94     73    119     76
D266V6, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3R3 MUTATED        2      2      0      3      0      1
  PIK3R3 WILD-TYPE     50     62     72    101     40     58
D266V7, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              3              101
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R3 MUTATED        7      1      0
  PIK3R3 WILD-TYPE    210     74     99
D266V8, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              7              210
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R3 MUTATED        2      2      1
  PIK3R3 WILD-TYPE    119    106     71
D266V9, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              2              106
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3R3 MUTATED        2      0      1      1      1
  PIK3R3 WILD-TYPE     86     66     44     54     46
D266V10, multiclass
        clus
vv       PIK3R3 MUTATED PIK3R3 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(267) Variable = ZNF124 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF124 MUTATED        2      7      1      0
  ZNF124 WILD-TYPE    202    130     46      3
D267V1, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              7              130
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF124 MUTATED        1      4      0      1      1
  ZNF124 WILD-TYPE     38     92     44     87     79
D267V2, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               92
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF124 MUTATED        2      4      1      1      1
  ZNF124 WILD-TYPE     24     75     72     81     57
D267V3, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              4               75
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF124 MUTATED        2      4      2      1
  ZNF124 WILD-TYPE    125     47     69     68
D267V4, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              4               47
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF124 MUTATED        0      0      7      2      0
  ZNF124 WILD-TYPE     84     85     78     67     47
D267V5, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              7               78
  CLUS_4              2               67
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF124 MUTATED        2      1      1      5
  ZNF124 WILD-TYPE     93     73    120     75
D267V6, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF124 MUTATED        0      5      2      2      1      0
  ZNF124 WILD-TYPE     52     59     70    102     39     59
D267V7, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              5               59
  CLUS_3              2               70
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF124 MUTATED        9      0      1
  ZNF124 WILD-TYPE    208     75     98
D267V8, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF124 MUTATED        2      2      2
  ZNF124 WILD-TYPE    119    106     70
D267V9, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              2              106
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF124 MUTATED        2      0      2      1      1
  ZNF124 WILD-TYPE     86     66     43     54     46
D267V10, multiclass
        clus
vv       ZNF124 MUTATED ZNF124 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(268) Variable = KNTC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KNTC1 MUTATED        8     10      2      0
  KNTC1 WILD-TYPE    196    127     45      3
D268V1, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             8             196
  CLUS_2            10             127
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KNTC1 MUTATED        1      7      1      2      2
  KNTC1 WILD-TYPE     38     89     43     86     78
D268V2, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             7              89
  CLUS_3             1              43
  CLUS_4             2              86
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KNTC1 MUTATED        3      8      1      2      4
  KNTC1 WILD-TYPE     23     71     72     80     54
D268V3, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             8              71
  CLUS_3             1              72
  CLUS_4             2              80
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KNTC1 MUTATED        4      8      4      2
  KNTC1 WILD-TYPE    123     43     67     67
D268V4, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             8              43
  CLUS_3             4              67
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KNTC1 MUTATED        1      1     14      3      1
  KNTC1 WILD-TYPE     83     84     71     66     46
D268V5, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3            14              71
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KNTC1 MUTATED        5      4      2      9
  KNTC1 WILD-TYPE     90     70    119     71
D268V6, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             4              70
  CLUS_3             2             119
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KNTC1 MUTATED        2      8      5      2      2      1
  KNTC1 WILD-TYPE     50     56     67    102     38     58
D268V7, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             8              56
  CLUS_3             5              67
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KNTC1 MUTATED       16      2      2
  KNTC1 WILD-TYPE    201     73     97
D268V8, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1            16             201
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KNTC1 MUTATED        6      1      4
  KNTC1 WILD-TYPE    115    107     68
D268V9, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KNTC1 MUTATED        3      0      3      2      3
  KNTC1 WILD-TYPE     85     66     42     53     44
D268V10, multiclass
        clus
vv       KNTC1 MUTATED KNTC1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             2              53
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(269) Variable = GAS6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAS6 MUTATED        2     12      2      0
  GAS6 WILD-TYPE    202    125     45      3
D269V1, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            2            202
  CLUS_2           12            125
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAS6 MUTATED        1      9      1      0      1
  GAS6 WILD-TYPE     38     87     43     88     79
D269V2, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            9             87
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAS6 MUTATED        2      4      4      2      3
  GAS6 WILD-TYPE     24     75     69     80     55
D269V3, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            4             75
  CLUS_3            4             69
  CLUS_4            2             80
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAS6 MUTATED        5      6      2      2
  GAS6 WILD-TYPE    122     45     69     67
D269V4, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            5            122
  CLUS_2            6             45
  CLUS_3            2             69
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAS6 MUTATED        0      2      6      4      1
  GAS6 WILD-TYPE     84     83     79     65     46
D269V5, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            6             79
  CLUS_4            4             65
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAS6 MUTATED        6      2      1      4
  GAS6 WILD-TYPE     89     72    120     76
D269V6, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            6             89
  CLUS_2            2             72
  CLUS_3            1            120
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GAS6 MUTATED        4      7      1      2      2      0
  GAS6 WILD-TYPE     48     57     71    102     38     59
D269V7, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            7             57
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAS6 MUTATED       13      1      2
  GAS6 WILD-TYPE    204     74     97
D269V8, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1           13            204
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAS6 MUTATED        5      2      5
  GAS6 WILD-TYPE    116    106     67
D269V9, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            2            106
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAS6 MUTATED        3      1      3      0      5
  GAS6 WILD-TYPE     85     65     42     55     42
D269V10, multiclass
        clus
vv       GAS6 MUTATED GAS6 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(270) Variable = HCFC1R1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCFC1R1 MUTATED        0      6      0      0
  HCFC1R1 WILD-TYPE    204    131     47      3
D270V1, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               6               131
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HCFC1R1 MUTATED        0      3      2      0      0
  HCFC1R1 WILD-TYPE     39     93     42     88     80
D270V2, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               2                42
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HCFC1R1 MUTATED        0      1      1      0      0
  HCFC1R1 WILD-TYPE     26     78     72     82     58
D270V3, multiclass
[1] "Remove cluster labels:" "HCFC1R1 MUTATED"       
clus
  HCFC1R1 MUTATED HCFC1R1 WILD-TYPE 
                2               316 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-4183        TCGA-BR-4184 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-4187        TCGA-BR-4188        TCGA-BR-4191        TCGA-BR-4253 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-4255        TCGA-BR-4256        TCGA-BR-4257        TCGA-BR-4267 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-4279        TCGA-BR-4280        TCGA-BR-4292        TCGA-BR-4294 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-4357        TCGA-BR-4361        TCGA-BR-4362        TCGA-BR-4363 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-4366        TCGA-BR-4368        TCGA-BR-4369        TCGA-BR-4370 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-4371        TCGA-BR-6452        TCGA-BR-6453        TCGA-BR-6454 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457        TCGA-BR-6458 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-6564        TCGA-BR-6565        TCGA-BR-6566        TCGA-BR-6705 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-6706        TCGA-BR-6707        TCGA-BR-6709        TCGA-BR-6710 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803        TCGA-BR-6852 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703        TCGA-BR-7704 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-7715        TCGA-BR-7716        TCGA-BR-7717        TCGA-BR-7722 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8060        TCGA-BR-8080        TCGA-BR-8081        TCGA-BR-8284 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8285        TCGA-BR-8286        TCGA-BR-8289        TCGA-BR-8291 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8361 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8366 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8367        TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8370 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8380        TCGA-BR-8381 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8484 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8588        TCGA-BR-8589 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A44U        TCGA-BR-A452 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-A453        TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-A4IU        TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-A4J1        TCGA-BR-A4J2        TCGA-BR-A4J4        TCGA-BR-A4J5 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-A4PE        TCGA-BR-A4PF        TCGA-BR-A4QI        TCGA-BR-A4QL 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5804 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525        TCGA-CD-8526 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CD-8527        TCGA-CD-8528        TCGA-CD-8529        TCGA-CD-8530 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8533        TCGA-CD-8534 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CD-A489        TCGA-CD-A48A        TCGA-CD-A48C        TCGA-CD-A4MG 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CD-A4MH        TCGA-CD-A4MI        TCGA-CD-A4MJ        TCGA-CG-4300 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-4301        TCGA-CG-4304        TCGA-CG-4305        TCGA-CG-4306 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-4436        TCGA-CG-4437        TCGA-CG-4438        TCGA-CG-4442 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-4443        TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-4460        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-4474        TCGA-CG-4475        TCGA-CG-4476        TCGA-CG-4477 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-5716        TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5723        TCGA-CG-5724 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6527        TCGA-D7-6528 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8573 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8578        TCGA-D7-A4YT 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YX        TCGA-D7-A4YY 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-A4Z0        TCGA-D7-A6EV        TCGA-D7-A6EX        TCGA-D7-A6EY 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-A6EZ        TCGA-D7-A6F0        TCGA-D7-A748        TCGA-EQ-8122 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-EQ-A4SO        TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-F1-A448        TCGA-F1-A72C        TCGA-FP-7916        TCGA-FP-7998 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-HF-7131        TCGA-HF-7132        TCGA-HF-7133        TCGA-HF-7134 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-HF-7136        TCGA-HJ-7597        TCGA-HU-8602        TCGA-HU-8608 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-HU-8610        TCGA-HU-A4GF        TCGA-HU-A4GQ        TCGA-HU-A4GT 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-HU-A4GU        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-HU-A4H3        TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4HD 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-IN-A6RI        TCGA-IN-A6RL        TCGA-IN-A6RN        TCGA-IN-A6RO 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-IN-A6RR        TCGA-IN-A6RS        TCGA-IN-A7NR        TCGA-IN-A7NT 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-IN-A7NU        TCGA-IN-AB1V        TCGA-IN-AB1X        TCGA-IP-7968 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-KB-A6F5        TCGA-KB-A93G        TCGA-MX-A5UG        TCGA-RD-A7BS 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-RD-A7BT        TCGA-RD-A7BW        TCGA-RD-A7C1        TCGA-RD-A8MV 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-RD-A8MW        TCGA-RD-A8N0        TCGA-RD-A8N1        TCGA-SW-A7EA 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-SW-A7EB        TCGA-VQ-A8DL        TCGA-VQ-A8DT        TCGA-VQ-A8DU 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-VQ-A8E2        TCGA-VQ-A8E7        TCGA-VQ-A8P2        TCGA-VQ-A8P3 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-VQ-A8PE        TCGA-VQ-A8PK        TCGA-VQ-A8PM        TCGA-VQ-A8PQ 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-VQ-A91U        TCGA-VQ-A91V        TCGA-VQ-A92D        TCGA-VQ-AA64 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-VQ-AA69        TCGA-VQ-AA6A        TCGA-VQ-AA6B        TCGA-VQ-AA6F 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-VQ-AA6G        TCGA-VQ-AA6I        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCFC1R1 MUTATED        0      1      1      0
  HCFC1R1 WILD-TYPE    127     50     70     69
D270V4, multiclass
[1] "Remove cluster labels:" "HCFC1R1 MUTATED"       
clus
  HCFC1R1 MUTATED HCFC1R1 WILD-TYPE 
                2               316 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-4183        TCGA-BR-4184 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-4187        TCGA-BR-4188        TCGA-BR-4191        TCGA-BR-4253 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-4255        TCGA-BR-4256        TCGA-BR-4257        TCGA-BR-4267 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-4279        TCGA-BR-4280        TCGA-BR-4292        TCGA-BR-4294 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-4357        TCGA-BR-4361        TCGA-BR-4362        TCGA-BR-4363 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-4366        TCGA-BR-4368        TCGA-BR-4369        TCGA-BR-4370 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-4371        TCGA-BR-6452        TCGA-BR-6453        TCGA-BR-6454 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457        TCGA-BR-6458 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-6564        TCGA-BR-6565        TCGA-BR-6566        TCGA-BR-6705 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-6706        TCGA-BR-6707        TCGA-BR-6709        TCGA-BR-6710 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803        TCGA-BR-6852 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703        TCGA-BR-7704 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-7715        TCGA-BR-7716        TCGA-BR-7717        TCGA-BR-7722 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8060        TCGA-BR-8080        TCGA-BR-8081        TCGA-BR-8284 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8285        TCGA-BR-8286        TCGA-BR-8289        TCGA-BR-8291 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8361 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8366 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8367        TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8370 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8380        TCGA-BR-8381 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8484 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8588        TCGA-BR-8589 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A44U        TCGA-BR-A452 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-A453        TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-A4IU        TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-A4J1        TCGA-BR-A4J2        TCGA-BR-A4J4        TCGA-BR-A4J5 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-A4PE        TCGA-BR-A4PF        TCGA-BR-A4QI        TCGA-BR-A4QL 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5804 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525        TCGA-CD-8526 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CD-8527        TCGA-CD-8528        TCGA-CD-8529        TCGA-CD-8530 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8533        TCGA-CD-8534 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CD-A489        TCGA-CD-A48A        TCGA-CD-A48C        TCGA-CD-A4MG 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CD-A4MH        TCGA-CD-A4MI        TCGA-CD-A4MJ        TCGA-CG-4300 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-4301        TCGA-CG-4304        TCGA-CG-4305        TCGA-CG-4306 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-4436        TCGA-CG-4437        TCGA-CG-4438        TCGA-CG-4442 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-4443        TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-4460        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-4474        TCGA-CG-4475        TCGA-CG-4476        TCGA-CG-4477 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-5716        TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5723        TCGA-CG-5724 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6527        TCGA-D7-6528 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8573 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8578        TCGA-D7-A4YT 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YX        TCGA-D7-A4YY 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-A4Z0        TCGA-D7-A6EV        TCGA-D7-A6EX        TCGA-D7-A6EY 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-D7-A6EZ        TCGA-D7-A6F0        TCGA-D7-A748        TCGA-EQ-8122 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-EQ-A4SO        TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-F1-A448        TCGA-F1-A72C        TCGA-FP-7916        TCGA-FP-7998 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-HF-7131        TCGA-HF-7132        TCGA-HF-7133        TCGA-HF-7134 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-HF-7136        TCGA-HJ-7597        TCGA-HU-8602        TCGA-HU-8608 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-HU-8610        TCGA-HU-A4GF        TCGA-HU-A4GQ        TCGA-HU-A4GT 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-HU-A4GU        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-HU-A4H3        TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4HD 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-IN-A6RI        TCGA-IN-A6RL        TCGA-IN-A6RN        TCGA-IN-A6RO 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-IN-A6RR        TCGA-IN-A6RS        TCGA-IN-A7NR        TCGA-IN-A7NT 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-IN-A7NU        TCGA-IN-AB1V        TCGA-IN-AB1X        TCGA-IP-7968 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-KB-A6F5        TCGA-KB-A93G        TCGA-MX-A5UG        TCGA-RD-A7BS 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-RD-A7BT        TCGA-RD-A7BW        TCGA-RD-A7C1        TCGA-RD-A8MV 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-RD-A8MW        TCGA-RD-A8N0        TCGA-RD-A8N1        TCGA-SW-A7EA 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-SW-A7EB        TCGA-VQ-A8DL        TCGA-VQ-A8DT        TCGA-VQ-A8DU 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-VQ-A8E2        TCGA-VQ-A8E7        TCGA-VQ-A8P2        TCGA-VQ-A8P3 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-VQ-A8PE        TCGA-VQ-A8PK        TCGA-VQ-A8PM        TCGA-VQ-A8PQ 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-VQ-A91U        TCGA-VQ-A91V        TCGA-VQ-A92D        TCGA-VQ-AA64 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-VQ-AA69        TCGA-VQ-AA6A        TCGA-VQ-AA6B        TCGA-VQ-AA6F 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
       TCGA-VQ-AA6G        TCGA-VQ-AA6I        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" "HCFC1R1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HCFC1R1 MUTATED        0      0      5      1      0
  HCFC1R1 WILD-TYPE     84     85     80     68     47
D270V5, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               5                80
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCFC1R1 MUTATED        1      1      0      4
  HCFC1R1 WILD-TYPE     94     73    121     76
D270V6, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HCFC1R1 MUTATED        2      2      2      0      0      0
  HCFC1R1 WILD-TYPE     50     62     70    104     40     59
D270V7, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               2                62
  CLUS_3               2                70
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HCFC1R1 MUTATED        5      0      1
  HCFC1R1 WILD-TYPE    212     75     98
D270V8, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               5               212
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HCFC1R1 MUTATED        2      0      1
  HCFC1R1 WILD-TYPE    119    108     71
D270V9, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               0               108
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HCFC1R1 MUTATED        1      0      0      0      2
  HCFC1R1 WILD-TYPE     87     66     45     55     45
D270V10, multiclass
        clus
vv       HCFC1R1 MUTATED HCFC1R1 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(271) Variable = NCAPD3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPD3 MUTATED        3     12      3      0
  NCAPD3 WILD-TYPE    201    125     44      3
D271V1, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             12              125
  CLUS_3              3               44
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCAPD3 MUTATED        4      7      2      0      3
  NCAPD3 WILD-TYPE     35     89     42     88     77
D271V2, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              4               35
  CLUS_2              7               89
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCAPD3 MUTATED        1      4      4      2      4
  NCAPD3 WILD-TYPE     25     75     69     80     54
D271V3, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              4               75
  CLUS_3              4               69
  CLUS_4              2               80
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPD3 MUTATED        4      7      3      1
  NCAPD3 WILD-TYPE    123     44     68     68
D271V4, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              7               44
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCAPD3 MUTATED        1      3      8      4      3
  NCAPD3 WILD-TYPE     83     82     77     65     44
D271V5, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               82
  CLUS_3              8               77
  CLUS_4              4               65
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPD3 MUTATED        8      2      1      8
  NCAPD3 WILD-TYPE     87     72    120     72
D271V6, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              8               87
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              8               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NCAPD3 MUTATED        4      6      6      3      0      0
  NCAPD3 WILD-TYPE     48     58     66    101     40     59
D271V7, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              6               58
  CLUS_3              6               66
  CLUS_4              3              101
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NCAPD3 MUTATED       16      3      0
  NCAPD3 WILD-TYPE    201     72     99
D271V8, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1             16              201
  CLUS_2              3               72
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NCAPD3 MUTATED        7      3      4
  NCAPD3 WILD-TYPE    114    105     68
D271V9, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              7              114
  CLUS_2              3              105
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCAPD3 MUTATED        3      3      2      0      6
  NCAPD3 WILD-TYPE     85     63     43     55     41
D271V10, multiclass
        clus
vv       NCAPD3 MUTATED NCAPD3 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              3               63
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(272) Variable = TAF1L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF1L MUTATED       10     14      7      0
  TAF1L WILD-TYPE    194    123     40      3
D272V1, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1            10             194
  CLUS_2            14             123
  CLUS_3             7              40
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF1L MUTATED        3     12      3      5      4
  TAF1L WILD-TYPE     36     84     41     83     76
D272V2, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1             3              36
  CLUS_2            12              84
  CLUS_3             3              41
  CLUS_4             5              83
  CLUS_5             4              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF1L MUTATED        1      8      9      2      4
  TAF1L WILD-TYPE     25     71     64     80     54
D272V3, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1             1              25
  CLUS_2             8              71
  CLUS_3             9              64
  CLUS_4             2              80
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF1L MUTATED        6      6      9      3
  TAF1L WILD-TYPE    121     45     62     66
D272V4, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1             6             121
  CLUS_2             6              45
  CLUS_3             9              62
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF1L MUTATED        4      4     12      5      6
  TAF1L WILD-TYPE     80     81     73     64     41
D272V5, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1             4              80
  CLUS_2             4              81
  CLUS_3            12              73
  CLUS_4             5              64
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF1L MUTATED       10      5      8      8
  TAF1L WILD-TYPE     85     69    113     72
D272V6, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1            10              85
  CLUS_2             5              69
  CLUS_3             8             113
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAF1L MUTATED        7      6      6      7      2      3
  TAF1L WILD-TYPE     45     58     66     97     38     56
D272V7, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1             7              45
  CLUS_2             6              58
  CLUS_3             6              66
  CLUS_4             7              97
  CLUS_5             2              38
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF1L MUTATED       25      2      4
  TAF1L WILD-TYPE    192     73     95
D272V8, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1            25             192
  CLUS_2             2              73
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF1L MUTATED       12      7      6
  TAF1L WILD-TYPE    109    101     66
D272V9, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1            12             109
  CLUS_2             7             101
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF1L MUTATED       10      5      3      1      6
  TAF1L WILD-TYPE     78     61     42     54     41
D272V10, multiclass
        clus
vv       TAF1L MUTATED TAF1L WILD-TYPE
  CLUS_1            10              78
  CLUS_2             5              61
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(273) Variable = LRRN2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRN2 MUTATED       18     15      1      0
  LRRN2 WILD-TYPE    186    122     46      3
D273V1, multiclass
        clus
vv       LRRN2 MUTATED LRRN2 WILD-TYPE
  CLUS_1            18             186
  CLUS_2            15             122
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRN2 MUTATED        6     10      5      5      7
  LRRN2 WILD-TYPE     33     86     39     83     73
D273V2, multiclass
        clus
vv       LRRN2 MUTATED LRRN2 WILD-TYPE
  CLUS_1             6              33
  CLUS_2            10              86
  CLUS_3             5              39
  CLUS_4             5              83
  CLUS_5             7              73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRN2 MUTATED        2      8      4      6      8
  LRRN2 WILD-TYPE     24     71     69     76     50
D273V3, multiclass
        clus
vv       LRRN2 MUTATED LRRN2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             8              71
  CLUS_3             4              69
  CLUS_4             6              76
  CLUS_5             8              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRN2 MUTATED        9      4      8      7
  LRRN2 WILD-TYPE    118     47     63     62
D273V4, multiclass
        clus
vv       LRRN2 MUTATED LRRN2 WILD-TYPE
  CLUS_1             9             118
  CLUS_2             4              47
  CLUS_3             8              63
  CLUS_4             7              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRN2 MUTATED        5     11      9      5      3
  LRRN2 WILD-TYPE     79     74     76     64     44
D273V5, multiclass
        clus
vv       LRRN2 MUTATED LRRN2 WILD-TYPE
  CLUS_1             5              79
  CLUS_2            11              74
  CLUS_3             9              76
  CLUS_4             5              64
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRN2 MUTATED        8      9      7      9
  LRRN2 WILD-TYPE     87     65    114     71
D273V6, multiclass
        clus
vv       LRRN2 MUTATED LRRN2 WILD-TYPE
  CLUS_1             8              87
  CLUS_2             9              65
  CLUS_3             7             114
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRRN2 MUTATED        5      3      7     15      1      3
  LRRN2 WILD-TYPE     47     61     65     89     39     56
D273V7, multiclass
        clus
vv       LRRN2 MUTATED LRRN2 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             3              61
  CLUS_3             7              65
  CLUS_4            15              89
  CLUS_5             1              39
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRN2 MUTATED       20      7      7
  LRRN2 WILD-TYPE    197     68     92
D273V8, multiclass
        clus
vv       LRRN2 MUTATED LRRN2 WILD-TYPE
  CLUS_1            20             197
  CLUS_2             7              68
  CLUS_3             7              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRN2 MUTATED       10     13      4
  LRRN2 WILD-TYPE    111     95     68
D273V9, multiclass
        clus
vv       LRRN2 MUTATED LRRN2 WILD-TYPE
  CLUS_1            10             111
  CLUS_2            13              95
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRN2 MUTATED       10      4      2      5      6
  LRRN2 WILD-TYPE     78     62     43     50     41
D273V10, multiclass
        clus
vv       LRRN2 MUTATED LRRN2 WILD-TYPE
  CLUS_1            10              78
  CLUS_2             4              62
  CLUS_3             2              43
  CLUS_4             5              50
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(274) Variable = C17ORF57 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF57 MUTATED        2      9      1      0
  C17ORF57 WILD-TYPE    202    128     46      3
D274V1, multiclass
        clus
vv       C17ORF57 MUTATED C17ORF57 WILD-TYPE
  CLUS_1                2                202
  CLUS_2                9                128
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C17ORF57 MUTATED        2      6      0      0      1
  C17ORF57 WILD-TYPE     37     90     44     88     79
D274V2, multiclass
        clus
vv       C17ORF57 MUTATED C17ORF57 WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                6                 90
  CLUS_3                0                 44
  CLUS_4                0                 88
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C17ORF57 MUTATED        1      4      4      0      2
  C17ORF57 WILD-TYPE     25     75     69     82     56
D274V3, multiclass
        clus
vv       C17ORF57 MUTATED C17ORF57 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                4                 75
  CLUS_3                4                 69
  CLUS_4                0                 82
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF57 MUTATED        3      7      1      0
  C17ORF57 WILD-TYPE    124     44     70     69
D274V4, multiclass
        clus
vv       C17ORF57 MUTATED C17ORF57 WILD-TYPE
  CLUS_1                3                124
  CLUS_2                7                 44
  CLUS_3                1                 70
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C17ORF57 MUTATED        0      1      8      1      1
  C17ORF57 WILD-TYPE     84     84     77     68     46
D274V5, multiclass
        clus
vv       C17ORF57 MUTATED C17ORF57 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                8                 77
  CLUS_4                1                 68
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C17ORF57 MUTATED        1      1      1      8
  C17ORF57 WILD-TYPE     94     73    120     72
D274V6, multiclass
        clus
vv       C17ORF57 MUTATED C17ORF57 WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                8                 72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C17ORF57 MUTATED        6      4      2      0      0      0
  C17ORF57 WILD-TYPE     46     60     70    104     40     59
D274V7, multiclass
        clus
vv       C17ORF57 MUTATED C17ORF57 WILD-TYPE
  CLUS_1                6                 46
  CLUS_2                4                 60
  CLUS_3                2                 70
  CLUS_4                0                104
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF57 MUTATED       11      0      1
  C17ORF57 WILD-TYPE    206     75     98
D274V8, multiclass
        clus
vv       C17ORF57 MUTATED C17ORF57 WILD-TYPE
  CLUS_1               11                206
  CLUS_2                0                 75
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C17ORF57 MUTATED        6      0      1
  C17ORF57 WILD-TYPE    115    108     71
D274V9, multiclass
        clus
vv       C17ORF57 MUTATED C17ORF57 WILD-TYPE
  CLUS_1                6                115
  CLUS_2                0                108
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C17ORF57 MUTATED        2      0      1      0      4
  C17ORF57 WILD-TYPE     86     66     44     55     43
D274V10, multiclass
        clus
vv       C17ORF57 MUTATED C17ORF57 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                0                 66
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(275) Variable = BEND3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEND3 MUTATED        2     10      0      0
  BEND3 WILD-TYPE    202    127     47      3
D275V1, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            10             127
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BEND3 MUTATED        0      7      1      0      1
  BEND3 WILD-TYPE     39     89     43     88     79
D275V2, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              89
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BEND3 MUTATED        0      6      1      0      2
  BEND3 WILD-TYPE     26     73     72     82     56
D275V3, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             6              73
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEND3 MUTATED        2      3      3      1
  BEND3 WILD-TYPE    125     48     68     68
D275V4, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             3              48
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BEND3 MUTATED        0      4      5      1      1
  BEND3 WILD-TYPE     84     81     80     68     46
D275V5, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             4              81
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEND3 MUTATED        4      3      1      3
  BEND3 WILD-TYPE     91     71    120     77
D275V6, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             3              71
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BEND3 MUTATED        3      7      0      1      1      0
  BEND3 WILD-TYPE     49     57     72    103     39     59
D275V7, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             7              57
  CLUS_3             0              72
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BEND3 MUTATED        9      2      1
  BEND3 WILD-TYPE    208     73     98
D275V8, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BEND3 MUTATED        3      2      4
  BEND3 WILD-TYPE    118    106     68
D275V9, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BEND3 MUTATED        2      1      2      0      4
  BEND3 WILD-TYPE     86     65     43     55     43
D275V10, multiclass
        clus
vv       BEND3 MUTATED BEND3 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(276) Variable = FAM98C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM98C MUTATED        0      7      1      0
  FAM98C WILD-TYPE    204    130     46      3
D276V1, multiclass
        clus
vv       FAM98C MUTATED FAM98C WILD-TYPE
  CLUS_1              0              204
  CLUS_2              7              130
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM98C MUTATED        1      2      2      0      0
  FAM98C WILD-TYPE     38     94     42     88     80
D276V2, multiclass
        clus
vv       FAM98C MUTATED FAM98C WILD-TYPE
  CLUS_1              1               38
  CLUS_2              2               94
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM98C MUTATED        0      4      0      1      2
  FAM98C WILD-TYPE     26     75     73     81     56
D276V3, multiclass
        clus
vv       FAM98C MUTATED FAM98C WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              0               73
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM98C MUTATED        1      3      2      1
  FAM98C WILD-TYPE    126     48     69     68
D276V4, multiclass
        clus
vv       FAM98C MUTATED FAM98C WILD-TYPE
  CLUS_1              1              126
  CLUS_2              3               48
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM98C MUTATED        0      1      5      0      2
  FAM98C WILD-TYPE     84     84     80     69     45
D276V5, multiclass
        clus
vv       FAM98C MUTATED FAM98C WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              5               80
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM98C MUTATED        1      1      0      6
  FAM98C WILD-TYPE     94     73    121     74
D276V6, multiclass
        clus
vv       FAM98C MUTATED FAM98C WILD-TYPE
  CLUS_1              1               94
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM98C MUTATED        2      5      0      1      0      0
  FAM98C WILD-TYPE     50     59     72    103     40     59
D276V7, multiclass
        clus
vv       FAM98C MUTATED FAM98C WILD-TYPE
  CLUS_1              2               50
  CLUS_2              5               59
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM98C MUTATED        8      0      0
  FAM98C WILD-TYPE    209     75     99
D276V8, multiclass
        clus
vv       FAM98C MUTATED FAM98C WILD-TYPE
  CLUS_1              8              209
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM98C MUTATED        3      1      1
  FAM98C WILD-TYPE    118    107     71
D276V9, multiclass
        clus
vv       FAM98C MUTATED FAM98C WILD-TYPE
  CLUS_1              3              118
  CLUS_2              1              107
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM98C MUTATED        3      0      1      0      1
  FAM98C WILD-TYPE     85     66     44     55     46
D276V10, multiclass
        clus
vv       FAM98C MUTATED FAM98C WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(277) Variable = KIAA0100 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0100 MUTATED        5     19      1      1
  KIAA0100 WILD-TYPE    199    118     46      2
D277V1, multiclass
        clus
vv       KIAA0100 MUTATED KIAA0100 WILD-TYPE
  CLUS_1                5                199
  CLUS_2               19                118
  CLUS_3                1                 46
  CLUS_4                1                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0100 MUTATED        2     12      1      1      1
  KIAA0100 WILD-TYPE     37     84     43     87     79
D277V2, multiclass
        clus
vv       KIAA0100 MUTATED KIAA0100 WILD-TYPE
  CLUS_1                2                 37
  CLUS_2               12                 84
  CLUS_3                1                 43
  CLUS_4                1                 87
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0100 MUTATED        2      7      5      3      4
  KIAA0100 WILD-TYPE     24     72     68     79     54
D277V3, multiclass
        clus
vv       KIAA0100 MUTATED KIAA0100 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                7                 72
  CLUS_3                5                 68
  CLUS_4                3                 79
  CLUS_5                4                 54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0100 MUTATED        4      9      5      3
  KIAA0100 WILD-TYPE    123     42     66     66
D277V4, multiclass
        clus
vv       KIAA0100 MUTATED KIAA0100 WILD-TYPE
  CLUS_1                4                123
  CLUS_2                9                 42
  CLUS_3                5                 66
  CLUS_4                3                 66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0100 MUTATED        2      7      9      4      4
  KIAA0100 WILD-TYPE     82     78     76     65     43
D277V5, multiclass
        clus
vv       KIAA0100 MUTATED KIAA0100 WILD-TYPE
  CLUS_1                2                 82
  CLUS_2                7                 78
  CLUS_3                9                 76
  CLUS_4                4                 65
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0100 MUTATED        7      5      4     10
  KIAA0100 WILD-TYPE     88     69    117     70
D277V6, multiclass
        clus
vv       KIAA0100 MUTATED KIAA0100 WILD-TYPE
  CLUS_1                7                 88
  CLUS_2                5                 69
  CLUS_3                4                117
  CLUS_4               10                 70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0100 MUTATED        4     12      4      3      2      1
  KIAA0100 WILD-TYPE     48     52     68    101     38     58
D277V7, multiclass
        clus
vv       KIAA0100 MUTATED KIAA0100 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2               12                 52
  CLUS_3                4                 68
  CLUS_4                3                101
  CLUS_5                2                 38
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0100 MUTATED       19      4      3
  KIAA0100 WILD-TYPE    198     71     96
D277V8, multiclass
        clus
vv       KIAA0100 MUTATED KIAA0100 WILD-TYPE
  CLUS_1               19                198
  CLUS_2                4                 71
  CLUS_3                3                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0100 MUTATED        5      5      5
  KIAA0100 WILD-TYPE    116    103     67
D277V9, multiclass
        clus
vv       KIAA0100 MUTATED KIAA0100 WILD-TYPE
  CLUS_1                5                116
  CLUS_2                5                103
  CLUS_3                5                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0100 MUTATED        6      2      3      0      4
  KIAA0100 WILD-TYPE     82     64     42     55     43
D277V10, multiclass
        clus
vv       KIAA0100 MUTATED KIAA0100 WILD-TYPE
  CLUS_1                6                 82
  CLUS_2                2                 64
  CLUS_3                3                 42
  CLUS_4                0                 55
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(278) Variable = MYLK3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYLK3 MUTATED        3      6      0      0
  MYLK3 WILD-TYPE    201    131     47      3
D278V1, multiclass
        clus
vv       MYLK3 MUTATED MYLK3 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             6             131
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYLK3 MUTATED        2      2      1      1      3
  MYLK3 WILD-TYPE     37     94     43     87     77
D278V2, multiclass
        clus
vv       MYLK3 MUTATED MYLK3 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             2              94
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYLK3 MUTATED        0      2      3      2      2
  MYLK3 WILD-TYPE     26     77     70     80     56
D278V3, multiclass
        clus
vv       MYLK3 MUTATED MYLK3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYLK3 MUTATED        3      3      1      2
  MYLK3 WILD-TYPE    124     48     70     67
D278V4, multiclass
        clus
vv       MYLK3 MUTATED MYLK3 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             3              48
  CLUS_3             1              70
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYLK3 MUTATED        1      4      3      1      0
  MYLK3 WILD-TYPE     83     81     82     68     47
D278V5, multiclass
        clus
vv       MYLK3 MUTATED MYLK3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             4              81
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYLK3 MUTATED        2      3      2      2
  MYLK3 WILD-TYPE     93     71    119     78
D278V6, multiclass
        clus
vv       MYLK3 MUTATED MYLK3 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             3              71
  CLUS_3             2             119
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYLK3 MUTATED        2      0      1      5      0      1
  MYLK3 WILD-TYPE     50     64     71     99     40     58
D278V7, multiclass
        clus
vv       MYLK3 MUTATED MYLK3 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             0              64
  CLUS_3             1              71
  CLUS_4             5              99
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYLK3 MUTATED        5      2      2
  MYLK3 WILD-TYPE    212     73     97
D278V8, multiclass
        clus
vv       MYLK3 MUTATED MYLK3 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYLK3 MUTATED        3      4      1
  MYLK3 WILD-TYPE    118    104     71
D278V9, multiclass
        clus
vv       MYLK3 MUTATED MYLK3 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             4             104
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYLK3 MUTATED        4      1      0      2      1
  MYLK3 WILD-TYPE     84     65     45     53     46
D278V10, multiclass
        clus
vv       MYLK3 MUTATED MYLK3 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             2              53
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(279) Variable = PLOD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLOD3 MUTATED        3     11      2      0
  PLOD3 WILD-TYPE    201    126     45      3
D279V1, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            11             126
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLOD3 MUTATED        1      9      0      2      1
  PLOD3 WILD-TYPE     38     87     44     86     79
D279V2, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             9              87
  CLUS_3             0              44
  CLUS_4             2              86
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLOD3 MUTATED        1      4      7      2      0
  PLOD3 WILD-TYPE     25     75     66     80     58
D279V3, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             7              66
  CLUS_4             2              80
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLOD3 MUTATED        4      5      3      2
  PLOD3 WILD-TYPE    123     46     68     67
D279V4, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             5              46
  CLUS_3             3              68
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLOD3 MUTATED        2      3      7      1      3
  PLOD3 WILD-TYPE     82     82     78     68     44
D279V5, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             3              82
  CLUS_3             7              78
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLOD3 MUTATED        3      2      3      8
  PLOD3 WILD-TYPE     92     72    118     72
D279V6, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             3             118
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLOD3 MUTATED        3      4      2      2      2      3
  PLOD3 WILD-TYPE     49     60     70    102     38     56
D279V7, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             4              60
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLOD3 MUTATED       11      2      3
  PLOD3 WILD-TYPE    206     73     96
D279V8, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             2              73
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLOD3 MUTATED        6      2      4
  PLOD3 WILD-TYPE    115    106     68
D279V9, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLOD3 MUTATED        2      1      3      0      6
  PLOD3 WILD-TYPE     86     65     42     55     41
D279V10, multiclass
        clus
vv       PLOD3 MUTATED PLOD3 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(280) Variable = RAD51AP2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD51AP2 MUTATED        3     12      1      0
  RAD51AP2 WILD-TYPE    201    125     46      3
D280V1, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                3                201
  CLUS_2               12                125
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD51AP2 MUTATED        1      8      1      2      1
  RAD51AP2 WILD-TYPE     38     88     43     86     79
D280V2, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                8                 88
  CLUS_3                1                 43
  CLUS_4                2                 86
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD51AP2 MUTATED        1      4      5      0      3
  RAD51AP2 WILD-TYPE     25     75     68     82     55
D280V3, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                4                 75
  CLUS_3                5                 68
  CLUS_4                0                 82
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD51AP2 MUTATED        5      6      2      0
  RAD51AP2 WILD-TYPE    122     45     69     69
D280V4, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                5                122
  CLUS_2                6                 45
  CLUS_3                2                 69
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD51AP2 MUTATED        2      1     10      1      2
  RAD51AP2 WILD-TYPE     82     84     75     68     45
D280V5, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                2                 82
  CLUS_2                1                 84
  CLUS_3               10                 75
  CLUS_4                1                 68
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAD51AP2 MUTATED        1      2      3     10
  RAD51AP2 WILD-TYPE     94     72    118     70
D280V6, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                2                 72
  CLUS_3                3                118
  CLUS_4               10                 70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAD51AP2 MUTATED        4      5      4      1      0      2
  RAD51AP2 WILD-TYPE     48     59     68    103     40     57
D280V7, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                5                 59
  CLUS_3                4                 68
  CLUS_4                1                103
  CLUS_5                0                 40
  CLUS_6                2                 57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  RAD51AP2 MUTATED       12      0      4
  RAD51AP2 WILD-TYPE    205     75     95
D280V8, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1               12                205
  CLUS_2                0                 75
  CLUS_3                4                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  RAD51AP2 MUTATED        9      0      1
  RAD51AP2 WILD-TYPE    112    108     71
D280V9, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                9                112
  CLUS_2                0                108
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAD51AP2 MUTATED        3      0      1      1      5
  RAD51AP2 WILD-TYPE     85     66     44     54     42
D280V10, multiclass
        clus
vv       RAD51AP2 MUTATED RAD51AP2 WILD-TYPE
  CLUS_1                3                 85
  CLUS_2                0                 66
  CLUS_3                1                 44
  CLUS_4                1                 54
  CLUS_5                5                 42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(281) Variable = U2AF2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  U2AF2 MUTATED        1     11      1      0
  U2AF2 WILD-TYPE    203    126     46      3
D281V1, multiclass
        clus
vv       U2AF2 MUTATED U2AF2 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  U2AF2 MUTATED        0     10      0      1      1
  U2AF2 WILD-TYPE     39     86     44     87     79
D281V2, multiclass
        clus
vv       U2AF2 MUTATED U2AF2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2            10              86
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  U2AF2 MUTATED        1      2      6      0      1
  U2AF2 WILD-TYPE     25     77     67     82     57
D281V3, multiclass
        clus
vv       U2AF2 MUTATED U2AF2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             6              67
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  U2AF2 MUTATED        3      5      1      1
  U2AF2 WILD-TYPE    124     46     70     68
D281V4, multiclass
        clus
vv       U2AF2 MUTATED U2AF2 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             5              46
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  U2AF2 MUTATED        1      4      5      2      2
  U2AF2 WILD-TYPE     83     81     80     67     45
D281V5, multiclass
        clus
vv       U2AF2 MUTATED U2AF2 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             4              81
  CLUS_3             5              80
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  U2AF2 MUTATED        4      4      0      6
  U2AF2 WILD-TYPE     91     70    121     74
D281V6, multiclass
        clus
vv       U2AF2 MUTATED U2AF2 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             4              70
  CLUS_3             0             121
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  U2AF2 MUTATED        5      2      2      2      2      1
  U2AF2 WILD-TYPE     47     62     70    102     38     58
D281V7, multiclass
        clus
vv       U2AF2 MUTATED U2AF2 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             2              62
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  U2AF2 MUTATED        9      2      3
  U2AF2 WILD-TYPE    208     73     96
D281V8, multiclass
        clus
vv       U2AF2 MUTATED U2AF2 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             2              73
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  U2AF2 MUTATED        8      2      2
  U2AF2 WILD-TYPE    113    106     70
D281V9, multiclass
        clus
vv       U2AF2 MUTATED U2AF2 WILD-TYPE
  CLUS_1             8             113
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  U2AF2 MUTATED        1      2      1      0      8
  U2AF2 WILD-TYPE     87     64     44     55     39
D281V10, multiclass
        clus
vv       U2AF2 MUTATED U2AF2 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             2              64
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             8              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(282) Variable = MFN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFN1 MUTATED        2      6      1      0
  MFN1 WILD-TYPE    202    131     46      3
D282V1, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            2            202
  CLUS_2            6            131
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MFN1 MUTATED        0      4      1      1      1
  MFN1 WILD-TYPE     39     92     43     87     79
D282V2, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MFN1 MUTATED        1      3      1      0      2
  MFN1 WILD-TYPE     25     76     72     82     56
D282V3, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFN1 MUTATED        3      3      1      0
  MFN1 WILD-TYPE    124     48     70     69
D282V4, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            3             48
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MFN1 MUTATED        1      0      3      3      1
  MFN1 WILD-TYPE     83     85     82     66     46
D282V5, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            0             85
  CLUS_3            3             82
  CLUS_4            3             66
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MFN1 MUTATED        6      1      1      0
  MFN1 WILD-TYPE     89     73    120     80
D282V6, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            6             89
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            0             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MFN1 MUTATED        1      5      2      0      0      1
  MFN1 WILD-TYPE     51     59     70    104     40     58
D282V7, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            5             59
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MFN1 MUTATED        8      0      1
  MFN1 WILD-TYPE    209     75     98
D282V8, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            8            209
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MFN1 MUTATED        3      0      4
  MFN1 WILD-TYPE    118    108     68
D282V9, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MFN1 MUTATED        1      0      3      1      2
  MFN1 WILD-TYPE     87     66     42     54     45
D282V10, multiclass
        clus
vv       MFN1 MUTATED MFN1 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            3             42
  CLUS_4            1             54
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(283) Variable = ATP6V1C2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1C2 MUTATED        1     12      2      0
  ATP6V1C2 WILD-TYPE    203    125     45      3
D283V1, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                1                203
  CLUS_2               12                125
  CLUS_3                2                 45
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1C2 MUTATED        1      9      1      0      2
  ATP6V1C2 WILD-TYPE     38     87     43     88     78
D283V2, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                9                 87
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1C2 MUTATED        1      3      5      0      3
  ATP6V1C2 WILD-TYPE     25     76     68     82     55
D283V3, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                3                 76
  CLUS_3                5                 68
  CLUS_4                0                 82
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1C2 MUTATED        3      7      1      1
  ATP6V1C2 WILD-TYPE    124     44     70     68
D283V4, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                3                124
  CLUS_2                7                 44
  CLUS_3                1                 70
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1C2 MUTATED        0      2      7      2      2
  ATP6V1C2 WILD-TYPE     84     83     78     67     45
D283V5, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                2                 83
  CLUS_3                7                 78
  CLUS_4                2                 67
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1C2 MUTATED        2      3      2      6
  ATP6V1C2 WILD-TYPE     93     71    119     74
D283V6, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                3                 71
  CLUS_3                2                119
  CLUS_4                6                 74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP6V1C2 MUTATED        4      4      4      1      2      0
  ATP6V1C2 WILD-TYPE     48     60     68    103     38     59
D283V7, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                4                 60
  CLUS_3                4                 68
  CLUS_4                1                103
  CLUS_5                2                 38
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V1C2 MUTATED       13      2      0
  ATP6V1C2 WILD-TYPE    204     73     99
D283V8, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1               13                204
  CLUS_2                2                 73
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ATP6V1C2 MUTATED        4      2      7
  ATP6V1C2 WILD-TYPE    117    106     65
D283V9, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                2                106
  CLUS_3                7                 65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1C2 MUTATED        2      2      2      0      7
  ATP6V1C2 WILD-TYPE     86     64     43     55     40
D283V10, multiclass
        clus
vv       ATP6V1C2 MUTATED ATP6V1C2 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                2                 64
  CLUS_3                2                 43
  CLUS_4                0                 55
  CLUS_5                7                 40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(284) Variable = NFE2L1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L1 MUTATED        3      8      0      0
  NFE2L1 WILD-TYPE    201    129     47      3
D284V1, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              8              129
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L1 MUTATED        2      4      0      0      1
  NFE2L1 WILD-TYPE     37     92     44     88     79
D284V2, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              4               92
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L1 MUTATED        1      3      3      1      1
  NFE2L1 WILD-TYPE     25     76     70     81     57
D284V3, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L1 MUTATED        4      2      2      1
  NFE2L1 WILD-TYPE    123     49     69     68
D284V4, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              2               49
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L1 MUTATED        0      1      5      3      2
  NFE2L1 WILD-TYPE     84     84     80     66     45
D284V5, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              5               80
  CLUS_4              3               66
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFE2L1 MUTATED        4      3      0      4
  NFE2L1 WILD-TYPE     91     71    121     76
D284V6, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              3               71
  CLUS_3              0              121
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NFE2L1 MUTATED        1      5      2      2      1      0
  NFE2L1 WILD-TYPE     51     59     70    102     39     59
D284V7, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              5               59
  CLUS_3              2               70
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L1 MUTATED        8      2      1
  NFE2L1 WILD-TYPE    209     73     98
D284V8, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              8              209
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NFE2L1 MUTATED        1      2      3
  NFE2L1 WILD-TYPE    120    106     69
D284V9, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              1              120
  CLUS_2              2              106
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFE2L1 MUTATED        1      1      0      1      3
  NFE2L1 WILD-TYPE     87     65     45     54     44
D284V10, multiclass
        clus
vv       NFE2L1 MUTATED NFE2L1 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              1               65
  CLUS_3              0               45
  CLUS_4              1               54
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(285) Variable = ERF MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERF MUTATED        3     11      1      0
  ERF WILD-TYPE    201    126     46      3
D285V1, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           3           201
  CLUS_2          11           126
  CLUS_3           1            46
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERF MUTATED        2      7      1      2      1
  ERF WILD-TYPE     37     89     43     86     79
D285V2, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           2            37
  CLUS_2           7            89
  CLUS_3           1            43
  CLUS_4           2            86
  CLUS_5           1            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERF MUTATED        1      5      5      3      2
  ERF WILD-TYPE     25     74     68     79     56
D285V3, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           1            25
  CLUS_2           5            74
  CLUS_3           5            68
  CLUS_4           3            79
  CLUS_5           2            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERF MUTATED        4      5      5      2
  ERF WILD-TYPE    123     46     66     67
D285V4, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           4           123
  CLUS_2           5            46
  CLUS_3           5            66
  CLUS_4           2            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERF MUTATED        2      2      9      1      1
  ERF WILD-TYPE     82     83     76     68     46
D285V5, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           2            82
  CLUS_2           2            83
  CLUS_3           9            76
  CLUS_4           1            68
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERF MUTATED        3      3      3      6
  ERF WILD-TYPE     92     71    118     74
D285V6, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           3            92
  CLUS_2           3            71
  CLUS_3           3           118
  CLUS_4           6            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERF MUTATED        2      6      3      3      1      1
  ERF WILD-TYPE     50     58     69    101     39     58
D285V7, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           2            50
  CLUS_2           6            58
  CLUS_3           3            69
  CLUS_4           3           101
  CLUS_5           1            39
  CLUS_6           1            58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ERF MUTATED       10      2      4
  ERF WILD-TYPE    207     73     95
D285V8, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1          10           207
  CLUS_2           2            73
  CLUS_3           4            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ERF MUTATED        2      2      5
  ERF WILD-TYPE    119    106     67
D285V9, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           2           119
  CLUS_2           2           106
  CLUS_3           5            67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERF MUTATED        3      1      3      1      1
  ERF WILD-TYPE     85     65     42     54     46
D285V10, multiclass
        clus
vv       ERF MUTATED ERF WILD-TYPE
  CLUS_1           3            85
  CLUS_2           1            65
  CLUS_3           3            42
  CLUS_4           1            54
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(286) Variable = TAS2R10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R10 MUTATED        2      2      0      0
  TAS2R10 WILD-TYPE    202    135     47      3
D286V1, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               2               135
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R10 MUTATED        0      3      0      1      0
  TAS2R10 WILD-TYPE     39     93     44     87     80
D286V2, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               0                44
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R10 MUTATED        1      0      2      0      0
  TAS2R10 WILD-TYPE     25     79     71     82     58
D286V3, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                79
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               0                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R10 MUTATED        1      2      0      0
  TAS2R10 WILD-TYPE    126     49     71     69
D286V4, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               2                49
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R10 MUTATED        1      0      1      1      1
  TAS2R10 WILD-TYPE     83     85     84     68     46
D286V5, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                85
  CLUS_3               1                84
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R10 MUTATED        2      0      0      2
  TAS2R10 WILD-TYPE     93     74    121     78
D286V6, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               0                74
  CLUS_3               0               121
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAS2R10 MUTATED        3      0      0      0      0      1
  TAS2R10 WILD-TYPE     49     64     72    104     40     58
D286V7, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               0                64
  CLUS_3               0                72
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAS2R10 MUTATED        3      0      1
  TAS2R10 WILD-TYPE    214     75     98
D286V8, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               3               214
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAS2R10 MUTATED        2      0      1
  TAS2R10 WILD-TYPE    119    108     71
D286V9, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               0               108
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R10 MUTATED        0      0      0      0      3
  TAS2R10 WILD-TYPE     88     66     45     55     44
D286V10, multiclass
        clus
vv       TAS2R10 MUTATED TAS2R10 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(287) Variable = FAM82A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM82A1 MUTATED        0      5      0      0
  FAM82A1 WILD-TYPE    204    132     47      3
D287V1, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               5               132
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM82A1 MUTATED        0      2      0      0      1
  FAM82A1 WILD-TYPE     39     94     44     88     79
D287V2, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               2                94
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM82A1 MUTATED        2      1      0      0      2
  FAM82A1 WILD-TYPE     24     78     73     82     56
D287V3, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               1                78
  CLUS_3               0                73
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM82A1 MUTATED        3      1      1      0
  FAM82A1 WILD-TYPE    124     50     70     69
D287V4, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               1                50
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM82A1 MUTATED        0      0      2      2      1
  FAM82A1 WILD-TYPE     84     85     83     67     46
D287V5, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               2                83
  CLUS_4               2                67
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM82A1 MUTATED        3      0      1      1
  FAM82A1 WILD-TYPE     92     74    120     79
D287V6, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               0                74
  CLUS_3               1               120
  CLUS_4               1                79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM82A1 MUTATED        0      4      1      0      0      0
  FAM82A1 WILD-TYPE     52     60     71    104     40     59
D287V7, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               0                52
  CLUS_2               4                60
  CLUS_3               1                71
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM82A1 MUTATED        4      0      1
  FAM82A1 WILD-TYPE    213     75     98
D287V8, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               4               213
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM82A1 MUTATED        0      0      3
  FAM82A1 WILD-TYPE    121    108     69
D287V9, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               0               121
  CLUS_2               0               108
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM82A1 MUTATED        1      0      2      0      0
  FAM82A1 WILD-TYPE     87     66     43     55     47
D287V10, multiclass
        clus
vv       FAM82A1 MUTATED FAM82A1 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(288) Variable = DYRK4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK4 MUTATED        1      6      1      0
  DYRK4 WILD-TYPE    203    131     46      3
D288V1, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             6             131
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYRK4 MUTATED        1      4      1      0      0
  DYRK4 WILD-TYPE     38     92     43     88     80
D288V2, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYRK4 MUTATED        0      2      2      1      2
  DYRK4 WILD-TYPE     26     77     71     81     56
D288V3, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK4 MUTATED        1      3      1      2
  DYRK4 WILD-TYPE    126     48     70     67
D288V4, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             3              48
  CLUS_3             1              70
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYRK4 MUTATED        0      2      4      1      1
  DYRK4 WILD-TYPE     84     83     81     68     46
D288V5, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYRK4 MUTATED        2      2      0      4
  DYRK4 WILD-TYPE     93     72    121     76
D288V6, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DYRK4 MUTATED        2      2      2      1      1      0
  DYRK4 WILD-TYPE     50     62     70    103     39     59
D288V7, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DYRK4 MUTATED        6      1      1
  DYRK4 WILD-TYPE    211     74     98
D288V8, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DYRK4 MUTATED        5      0      0
  DYRK4 WILD-TYPE    116    108     72
D288V9, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             0             108
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYRK4 MUTATED        4      0      0      0      1
  DYRK4 WILD-TYPE     84     66     45     55     46
D288V10, multiclass
        clus
vv       DYRK4 MUTATED DYRK4 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(289) Variable = BTNL3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTNL3 MUTATED        1      5      0      0
  BTNL3 WILD-TYPE    203    132     47      3
D289V1, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             5             132
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTNL3 MUTATED        0      1      2      1      1
  BTNL3 WILD-TYPE     39     95     42     87     79
D289V2, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             1              95
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTNL3 MUTATED        1      4      0      0      0
  BTNL3 WILD-TYPE     25     75     73     82     58
D289V3, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             0              73
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTNL3 MUTATED        1      1      3      0
  BTNL3 WILD-TYPE    126     50     68     69
D289V4, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             1              50
  CLUS_3             3              68
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTNL3 MUTATED        1      2      1      1      0
  BTNL3 WILD-TYPE     83     83     84     68     47
D289V5, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             1              84
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTNL3 MUTATED        1      0      2      2
  BTNL3 WILD-TYPE     94     74    119     78
D289V6, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             2             119
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTNL3 MUTATED        0      3      1      2      0      0
  BTNL3 WILD-TYPE     52     61     71    102     40     59
D289V7, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTNL3 MUTATED        4      1      1
  BTNL3 WILD-TYPE    213     74     98
D289V8, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BTNL3 MUTATED        0      2      2
  BTNL3 WILD-TYPE    121    106     70
D289V9, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             0             121
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTNL3 MUTATED        1      0      2      1      0
  BTNL3 WILD-TYPE     87     66     43     54     47
D289V10, multiclass
        clus
vv       BTNL3 MUTATED BTNL3 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(290) Variable = ADNP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADNP MUTATED        1     17      0      0
  ADNP WILD-TYPE    203    120     47      3
D290V1, multiclass
        clus
vv       ADNP MUTATED ADNP WILD-TYPE
  CLUS_1            1            203
  CLUS_2           17            120
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADNP MUTATED        1     10      1      0      1
  ADNP WILD-TYPE     38     86     43     88     79
D290V2, multiclass
        clus
vv       ADNP MUTATED ADNP WILD-TYPE
  CLUS_1            1             38
  CLUS_2           10             86
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADNP MUTATED        3      7      5      2      1
  ADNP WILD-TYPE     23     72     68     80     57
D290V3, multiclass
        clus
vv       ADNP MUTATED ADNP WILD-TYPE
  CLUS_1            3             23
  CLUS_2            7             72
  CLUS_3            5             68
  CLUS_4            2             80
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADNP MUTATED        5      8      3      2
  ADNP WILD-TYPE    122     43     68     67
D290V4, multiclass
        clus
vv       ADNP MUTATED ADNP WILD-TYPE
  CLUS_1            5            122
  CLUS_2            8             43
  CLUS_3            3             68
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADNP MUTATED        1      3      7      2      4
  ADNP WILD-TYPE     83     82     78     67     43
D290V5, multiclass
        clus
vv       ADNP MUTATED ADNP WILD-TYPE
  CLUS_1            1             83
  CLUS_2            3             82
  CLUS_3            7             78
  CLUS_4            2             67
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADNP MUTATED        7      3      1      6
  ADNP WILD-TYPE     88     71    120     74
D290V6, multiclass
        clus
vv       ADNP MUTATED ADNP WILD-TYPE
  CLUS_1            7             88
  CLUS_2            3             71
  CLUS_3            1            120
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADNP MUTATED        4      8      1      2      2      1
  ADNP WILD-TYPE     48     56     71    102     38     58
D290V7, multiclass
        clus
vv       ADNP MUTATED ADNP WILD-TYPE
  CLUS_1            4             48
  CLUS_2            8             56
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            2             38
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ADNP MUTATED       14      2      2
  ADNP WILD-TYPE    203     73     97
D290V8, multiclass
        clus
vv       ADNP MUTATED ADNP WILD-TYPE
  CLUS_1           14            203
  CLUS_2            2             73
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ADNP MUTATED        2      2      7
  ADNP WILD-TYPE    119    106     65
D290V9, multiclass
        clus
vv       ADNP MUTATED ADNP WILD-TYPE
  CLUS_1            2            119
  CLUS_2            2            106
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADNP MUTATED        4      1      3      0      3
  ADNP WILD-TYPE     84     65     42     55     44
D290V10, multiclass
        clus
vv       ADNP MUTATED ADNP WILD-TYPE
  CLUS_1            4             84
  CLUS_2            1             65
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(291) Variable = ELF3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        1     10      1      0
  ELF3 WILD-TYPE    203    127     46      3
D291V1, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            1            203
  CLUS_2           10            127
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELF3 MUTATED        2      4      2      0      1
  ELF3 WILD-TYPE     37     92     42     88     79
D291V2, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            4             92
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELF3 MUTATED        1      8      1      1      1
  ELF3 WILD-TYPE     25     71     72     81     57
D291V3, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            8             71
  CLUS_3            1             72
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        1      5      6      0
  ELF3 WILD-TYPE    126     46     65     69
D291V4, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            5             46
  CLUS_3            6             65
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELF3 MUTATED        0      2      5      1      4
  ELF3 WILD-TYPE     84     83     80     68     43
D291V5, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            5             80
  CLUS_4            1             68
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELF3 MUTATED        2      2      2      6
  ELF3 WILD-TYPE     93     72    119     74
D291V6, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            2             72
  CLUS_3            2            119
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ELF3 MUTATED        2     10      1      0      0      0
  ELF3 WILD-TYPE     50     54     71    104     40     59
D291V7, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            2             50
  CLUS_2           10             54
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF3 MUTATED       13      0      0
  ELF3 WILD-TYPE    204     75     99
D291V8, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1           13            204
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELF3 MUTATED        1      0      8
  ELF3 WILD-TYPE    120    108     64
D291V9, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            1            120
  CLUS_2            0            108
  CLUS_3            8             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELF3 MUTATED        2      0      5      0      2
  ELF3 WILD-TYPE     86     66     40     55     45
D291V10, multiclass
        clus
vv       ELF3 MUTATED ELF3 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            5             40
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(292) Variable = NID2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NID2 MUTATED        1     14      4      0
  NID2 WILD-TYPE    203    123     43      3
D292V1, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            1            203
  CLUS_2           14            123
  CLUS_3            4             43
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NID2 MUTATED        3      8      1      0      2
  NID2 WILD-TYPE     36     88     43     88     78
D292V2, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            3             36
  CLUS_2            8             88
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NID2 MUTATED        1      4      7      2      4
  NID2 WILD-TYPE     25     75     66     80     54
D292V3, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             75
  CLUS_3            7             66
  CLUS_4            2             80
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NID2 MUTATED        6      8      2      2
  NID2 WILD-TYPE    121     43     69     67
D292V4, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            6            121
  CLUS_2            8             43
  CLUS_3            2             69
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NID2 MUTATED        0      2     10      3      2
  NID2 WILD-TYPE     84     83     75     66     45
D292V5, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3           10             75
  CLUS_4            3             66
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NID2 MUTATED        6      3      2      6
  NID2 WILD-TYPE     89     71    119     74
D292V6, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            6             89
  CLUS_2            3             71
  CLUS_3            2            119
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NID2 MUTATED        2      8      5      3      1      0
  NID2 WILD-TYPE     50     56     67    101     39     59
D292V7, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            8             56
  CLUS_3            5             67
  CLUS_4            3            101
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NID2 MUTATED       15      3      1
  NID2 WILD-TYPE    202     72     98
D292V8, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1           15            202
  CLUS_2            3             72
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NID2 MUTATED        5      2      5
  NID2 WILD-TYPE    116    106     67
D292V9, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            2            106
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NID2 MUTATED        3      2      3      0      4
  NID2 WILD-TYPE     85     64     42     55     43
D292V10, multiclass
        clus
vv       NID2 MUTATED NID2 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            2             64
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(293) Variable = FBN3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBN3 MUTATED        5     22      6      0
  FBN3 WILD-TYPE    199    115     41      3
D293V1, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1            5            199
  CLUS_2           22            115
  CLUS_3            6             41
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBN3 MUTATED        1     17      4      3      2
  FBN3 WILD-TYPE     38     79     40     85     78
D293V2, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1            1             38
  CLUS_2           17             79
  CLUS_3            4             40
  CLUS_4            3             85
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBN3 MUTATED        5      9      7      2      6
  FBN3 WILD-TYPE     21     70     66     80     52
D293V3, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1            5             21
  CLUS_2            9             70
  CLUS_3            7             66
  CLUS_4            2             80
  CLUS_5            6             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBN3 MUTATED        9     12      5      3
  FBN3 WILD-TYPE    118     39     66     66
D293V4, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1            9            118
  CLUS_2           12             39
  CLUS_3            5             66
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBN3 MUTATED        3      5     14      3      7
  FBN3 WILD-TYPE     81     80     71     66     40
D293V5, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1            3             81
  CLUS_2            5             80
  CLUS_3           14             71
  CLUS_4            3             66
  CLUS_5            7             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBN3 MUTATED        5      3      4     20
  FBN3 WILD-TYPE     90     71    117     60
D293V6, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1            5             90
  CLUS_2            3             71
  CLUS_3            4            117
  CLUS_4           20             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBN3 MUTATED        9     11      5      2      3      3
  FBN3 WILD-TYPE     43     53     67    102     37     56
D293V7, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1            9             43
  CLUS_2           11             53
  CLUS_3            5             67
  CLUS_4            2            102
  CLUS_5            3             37
  CLUS_6            3             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FBN3 MUTATED       28      1      4
  FBN3 WILD-TYPE    189     74     95
D293V8, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1           28            189
  CLUS_2            1             74
  CLUS_3            4             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FBN3 MUTATED       12      3      8
  FBN3 WILD-TYPE    109    105     64
D293V9, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1           12            109
  CLUS_2            3            105
  CLUS_3            8             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBN3 MUTATED        9      1      6      0      7
  FBN3 WILD-TYPE     79     65     39     55     40
D293V10, multiclass
        clus
vv       FBN3 MUTATED FBN3 WILD-TYPE
  CLUS_1            9             79
  CLUS_2            1             65
  CLUS_3            6             39
  CLUS_4            0             55
  CLUS_5            7             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(294) Variable = ABCA6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA6 MUTATED        2     12      0      0
  ABCA6 WILD-TYPE    202    125     47      3
D294V1, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            12             125
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA6 MUTATED        1      6      2      1      1
  ABCA6 WILD-TYPE     38     90     42     87     79
D294V2, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA6 MUTATED        0      3      4      1      5
  ABCA6 WILD-TYPE     26     76     69     81     53
D294V3, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA6 MUTATED        3      7      1      2
  ABCA6 WILD-TYPE    124     44     70     67
D294V4, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             7              44
  CLUS_3             1              70
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA6 MUTATED        1      5      6      1      1
  ABCA6 WILD-TYPE     83     80     79     68     46
D294V5, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             5              80
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA6 MUTATED        2      2      2      8
  ABCA6 WILD-TYPE     93     72    119     72
D294V6, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCA6 MUTATED        5      5      1      3      1      0
  ABCA6 WILD-TYPE     47     59     71    101     39     59
D294V7, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             5              59
  CLUS_3             1              71
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA6 MUTATED       12      2      1
  ABCA6 WILD-TYPE    205     73     98
D294V8, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA6 MUTATED        7      2      2
  ABCA6 WILD-TYPE    114    106     70
D294V9, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA6 MUTATED        5      2      1      0      3
  ABCA6 WILD-TYPE     83     64     44     55     44
D294V10, multiclass
        clus
vv       ABCA6 MUTATED ABCA6 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             2              64
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(295) Variable = IDE MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDE MUTATED        1      8      2      0
  IDE WILD-TYPE    203    129     45      3
D295V1, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           1           203
  CLUS_2           8           129
  CLUS_3           2            45
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDE MUTATED        2      6      0      1      0
  IDE WILD-TYPE     37     90     44     87     80
D295V2, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           2            37
  CLUS_2           6            90
  CLUS_3           0            44
  CLUS_4           1            87
  CLUS_5           0            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDE MUTATED        0      1      3      0      6
  IDE WILD-TYPE     26     78     70     82     52
D295V3, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           0            26
  CLUS_2           1            78
  CLUS_3           3            70
  CLUS_4           0            82
  CLUS_5           6            52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDE MUTATED        3      7      0      0
  IDE WILD-TYPE    124     44     71     69
D295V4, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           3           124
  CLUS_2           7            44
  CLUS_3           0            71
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDE MUTATED        1      3      3      1      3
  IDE WILD-TYPE     83     82     82     68     44
D295V5, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           1            83
  CLUS_2           3            82
  CLUS_3           3            82
  CLUS_4           1            68
  CLUS_5           3            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDE MUTATED        1      2      1      7
  IDE WILD-TYPE     94     72    120     73
D295V6, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           1            94
  CLUS_2           2            72
  CLUS_3           1           120
  CLUS_4           7            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IDE MUTATED        3      2      2      3      0      1
  IDE WILD-TYPE     49     62     70    101     40     58
D295V7, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           3            49
  CLUS_2           2            62
  CLUS_3           2            70
  CLUS_4           3           101
  CLUS_5           0            40
  CLUS_6           1            58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IDE MUTATED        7      2      2
  IDE WILD-TYPE    210     73     97
D295V8, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           7           210
  CLUS_2           2            73
  CLUS_3           2            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  IDE MUTATED        5      2      1
  IDE WILD-TYPE    116    106     71
D295V9, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           5           116
  CLUS_2           2           106
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDE MUTATED        2      2      0      0      4
  IDE WILD-TYPE     86     64     45     55     43
D295V10, multiclass
        clus
vv       IDE MUTATED IDE WILD-TYPE
  CLUS_1           2            86
  CLUS_2           2            64
  CLUS_3           0            45
  CLUS_4           0            55
  CLUS_5           4            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(296) Variable = BCLAF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED       10     18      2      0
  BCLAF1 WILD-TYPE    194    119     45      3
D296V1, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1             10              194
  CLUS_2             18              119
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCLAF1 MUTATED        5     11      3      4      3
  BCLAF1 WILD-TYPE     34     85     41     84     77
D296V2, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              5               34
  CLUS_2             11               85
  CLUS_3              3               41
  CLUS_4              4               84
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCLAF1 MUTATED        4      7      6      0      8
  BCLAF1 WILD-TYPE     22     72     67     82     50
D296V3, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              4               22
  CLUS_2              7               72
  CLUS_3              6               67
  CLUS_4              0               82
  CLUS_5              8               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED       10      7      5      3
  BCLAF1 WILD-TYPE    117     44     66     66
D296V4, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1             10              117
  CLUS_2              7               44
  CLUS_3              5               66
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCLAF1 MUTATED        5      3     10      5      5
  BCLAF1 WILD-TYPE     79     82     75     64     42
D296V5, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              5               79
  CLUS_2              3               82
  CLUS_3             10               75
  CLUS_4              5               64
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCLAF1 MUTATED        9      2      6     11
  BCLAF1 WILD-TYPE     86     72    115     69
D296V6, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              9               86
  CLUS_2              2               72
  CLUS_3              6              115
  CLUS_4             11               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCLAF1 MUTATED        4      9      7      5      2      3
  BCLAF1 WILD-TYPE     48     55     65     99     38     56
D296V7, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              9               55
  CLUS_3              7               65
  CLUS_4              5               99
  CLUS_5              2               38
  CLUS_6              3               56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCLAF1 MUTATED       24      2      4
  BCLAF1 WILD-TYPE    193     73     95
D296V8, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1             24              193
  CLUS_2              2               73
  CLUS_3              4               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCLAF1 MUTATED       12      1     10
  BCLAF1 WILD-TYPE    109    107     62
D296V9, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1             12              109
  CLUS_2              1              107
  CLUS_3             10               62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCLAF1 MUTATED        9      0      5      3      6
  BCLAF1 WILD-TYPE     79     66     40     52     41
D296V10, multiclass
        clus
vv       BCLAF1 MUTATED BCLAF1 WILD-TYPE
  CLUS_1              9               79
  CLUS_2              0               66
  CLUS_3              5               40
  CLUS_4              3               52
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(297) Variable = DLGAP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP3 MUTATED        8     10      2      0
  DLGAP3 WILD-TYPE    196    127     45      3
D297V1, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              8              196
  CLUS_2             10              127
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLGAP3 MUTATED        2     11      2      1      3
  DLGAP3 WILD-TYPE     37     85     42     87     77
D297V2, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              2               37
  CLUS_2             11               85
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLGAP3 MUTATED        1      6      3      3      4
  DLGAP3 WILD-TYPE     25     73     70     79     54
D297V3, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              6               73
  CLUS_3              3               70
  CLUS_4              3               79
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP3 MUTATED        4      6      5      2
  DLGAP3 WILD-TYPE    123     45     66     67
D297V4, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              6               45
  CLUS_3              5               66
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLGAP3 MUTATED        2      2     10      2      3
  DLGAP3 WILD-TYPE     82     83     75     67     44
D297V5, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              2               83
  CLUS_3             10               75
  CLUS_4              2               67
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLGAP3 MUTATED        3      3      4      9
  DLGAP3 WILD-TYPE     92     71    117     71
D297V6, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              3               71
  CLUS_3              4              117
  CLUS_4              9               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DLGAP3 MUTATED        7      4      4      3      1      1
  DLGAP3 WILD-TYPE     45     60     68    101     39     58
D297V7, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              7               45
  CLUS_2              4               60
  CLUS_3              4               68
  CLUS_4              3              101
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DLGAP3 MUTATED       17      2      1
  DLGAP3 WILD-TYPE    200     73     98
D297V8, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1             17              200
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DLGAP3 MUTATED        8      3      6
  DLGAP3 WILD-TYPE    113    105     66
D297V9, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              8              113
  CLUS_2              3              105
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLGAP3 MUTATED        5      3      2      1      6
  DLGAP3 WILD-TYPE     83     63     43     54     41
D297V10, multiclass
        clus
vv       DLGAP3 MUTATED DLGAP3 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              3               63
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(298) Variable = ZC3H13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H13 MUTATED        5     24      1      0
  ZC3H13 WILD-TYPE    199    113     46      3
D298V1, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              5              199
  CLUS_2             24              113
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H13 MUTATED        2     16      3      0      2
  ZC3H13 WILD-TYPE     37     80     41     88     78
D298V2, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              2               37
  CLUS_2             16               80
  CLUS_3              3               41
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H13 MUTATED        2     11      6      0      5
  ZC3H13 WILD-TYPE     24     68     67     82     53
D298V3, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              2               24
  CLUS_2             11               68
  CLUS_3              6               67
  CLUS_4              0               82
  CLUS_5              5               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H13 MUTATED        4     11      8      1
  ZC3H13 WILD-TYPE    123     40     63     68
D298V4, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              4              123
  CLUS_2             11               40
  CLUS_3              8               63
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H13 MUTATED        3      5     16      4      2
  ZC3H13 WILD-TYPE     81     80     69     65     45
D298V5, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              3               81
  CLUS_2              5               80
  CLUS_3             16               69
  CLUS_4              4               65
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H13 MUTATED        9      4      4     13
  ZC3H13 WILD-TYPE     86     70    117     67
D298V6, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              9               86
  CLUS_2              4               70
  CLUS_3              4              117
  CLUS_4             13               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H13 MUTATED        8     10      6      2      3      2
  ZC3H13 WILD-TYPE     44     54     66    102     37     57
D298V7, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              8               44
  CLUS_2             10               54
  CLUS_3              6               66
  CLUS_4              2              102
  CLUS_5              3               37
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H13 MUTATED       23      2      6
  ZC3H13 WILD-TYPE    194     73     93
D298V8, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1             23              194
  CLUS_2              2               73
  CLUS_3              6               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZC3H13 MUTATED        8      5      7
  ZC3H13 WILD-TYPE    113    103     65
D298V9, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              8              113
  CLUS_2              5              103
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H13 MUTATED        8      2      4      0      6
  ZC3H13 WILD-TYPE     80     64     41     55     41
D298V10, multiclass
        clus
vv       ZC3H13 MUTATED ZC3H13 WILD-TYPE
  CLUS_1              8               80
  CLUS_2              2               64
  CLUS_3              4               41
  CLUS_4              0               55
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(299) Variable = RTN2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTN2 MUTATED        2     11      2      0
  RTN2 WILD-TYPE    202    126     45      3
D299V1, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            2            202
  CLUS_2           11            126
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTN2 MUTATED        0      7      2      2      1
  RTN2 WILD-TYPE     39     89     42     86     79
D299V2, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            7             89
  CLUS_3            2             42
  CLUS_4            2             86
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTN2 MUTATED        2      5      3      1      3
  RTN2 WILD-TYPE     24     74     70     81     55
D299V3, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            5             74
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTN2 MUTATED        3      5      5      1
  RTN2 WILD-TYPE    124     46     66     68
D299V4, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            5             46
  CLUS_3            5             66
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTN2 MUTATED        2      5      3      1      2
  RTN2 WILD-TYPE     82     80     82     68     45
D299V5, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            5             80
  CLUS_3            3             82
  CLUS_4            1             68
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RTN2 MUTATED        3      2      2      6
  RTN2 WILD-TYPE     92     72    119     74
D299V6, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            2             72
  CLUS_3            2            119
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RTN2 MUTATED        1      7      3      1      1      2
  RTN2 WILD-TYPE     51     57     69    103     39     57
D299V7, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            7             57
  CLUS_3            3             69
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTN2 MUTATED       12      0      3
  RTN2 WILD-TYPE    205     75     96
D299V8, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1           12            205
  CLUS_2            0             75
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RTN2 MUTATED        2      1      8
  RTN2 WILD-TYPE    119    107     64
D299V9, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            1            107
  CLUS_3            8             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RTN2 MUTATED        2      0      5      1      3
  RTN2 WILD-TYPE     86     66     40     54     44
D299V10, multiclass
        clus
vv       RTN2 MUTATED RTN2 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            5             40
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(300) Variable = RAI1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAI1 MUTATED        6     21      2      0
  RAI1 WILD-TYPE    198    116     45      3
D300V1, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            6            198
  CLUS_2           21            116
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI1 MUTATED        2     14      2      4      2
  RAI1 WILD-TYPE     37     82     42     84     78
D300V2, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            2             37
  CLUS_2           14             82
  CLUS_3            2             42
  CLUS_4            4             84
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI1 MUTATED        2      7      6      2      8
  RAI1 WILD-TYPE     24     72     67     80     50
D300V3, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            7             72
  CLUS_3            6             67
  CLUS_4            2             80
  CLUS_5            8             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAI1 MUTATED        7      9      7      2
  RAI1 WILD-TYPE    120     42     64     67
D300V4, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            7            120
  CLUS_2            9             42
  CLUS_3            7             64
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI1 MUTATED        5      5     12      4      3
  RAI1 WILD-TYPE     79     80     73     65     44
D300V5, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            5             79
  CLUS_2            5             80
  CLUS_3           12             73
  CLUS_4            4             65
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAI1 MUTATED        5      3      6     15
  RAI1 WILD-TYPE     90     71    115     65
D300V6, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            5             90
  CLUS_2            3             71
  CLUS_3            6            115
  CLUS_4           15             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAI1 MUTATED        9      8      5      6      0      1
  RAI1 WILD-TYPE     43     56     67     98     40     58
D300V7, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            9             43
  CLUS_2            8             56
  CLUS_3            5             67
  CLUS_4            6             98
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAI1 MUTATED       23      3      3
  RAI1 WILD-TYPE    194     72     96
D300V8, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1           23            194
  CLUS_2            3             72
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAI1 MUTATED       11      5      4
  RAI1 WILD-TYPE    110    103     68
D300V9, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1           11            110
  CLUS_2            5            103
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAI1 MUTATED        7      1      3      3      6
  RAI1 WILD-TYPE     81     65     42     52     41
D300V10, multiclass
        clus
vv       RAI1 MUTATED RAI1 WILD-TYPE
  CLUS_1            7             81
  CLUS_2            1             65
  CLUS_3            3             42
  CLUS_4            3             52
  CLUS_5            6             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(301) Variable = C6ORF165 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF165 MUTATED        2     11      3      0
  C6ORF165 WILD-TYPE    202    126     44      3
D301V1, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                2                202
  CLUS_2               11                126
  CLUS_3                3                 44
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF165 MUTATED        2      7      2      1      2
  C6ORF165 WILD-TYPE     37     89     42     87     78
D301V2, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                7                 89
  CLUS_3                2                 42
  CLUS_4                1                 87
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF165 MUTATED        1      7      3      0      3
  C6ORF165 WILD-TYPE     25     72     70     82     55
D301V3, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                7                 72
  CLUS_3                3                 70
  CLUS_4                0                 82
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF165 MUTATED        3      5      6      0
  C6ORF165 WILD-TYPE    124     46     65     69
D301V4, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                3                124
  CLUS_2                5                 46
  CLUS_3                6                 65
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF165 MUTATED        1      2      7      3      2
  C6ORF165 WILD-TYPE     83     83     78     66     45
D301V5, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 83
  CLUS_3                7                 78
  CLUS_4                3                 66
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF165 MUTATED        6      0      3      6
  C6ORF165 WILD-TYPE     89     74    118     74
D301V6, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                6                 89
  CLUS_2                0                 74
  CLUS_3                3                118
  CLUS_4                6                 74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C6ORF165 MUTATED        4      3      5      1      1      1
  C6ORF165 WILD-TYPE     48     61     67    103     39     58
D301V7, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                3                 61
  CLUS_3                5                 67
  CLUS_4                1                103
  CLUS_5                1                 39
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF165 MUTATED       12      1      2
  C6ORF165 WILD-TYPE    205     74     97
D301V8, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1               12                205
  CLUS_2                1                 74
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF165 MUTATED        6      1      4
  C6ORF165 WILD-TYPE    115    107     68
D301V9, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                6                115
  CLUS_2                1                107
  CLUS_3                4                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF165 MUTATED        4      0      1      1      5
  C6ORF165 WILD-TYPE     84     66     44     54     42
D301V10, multiclass
        clus
vv       C6ORF165 MUTATED C6ORF165 WILD-TYPE
  CLUS_1                4                 84
  CLUS_2                0                 66
  CLUS_3                1                 44
  CLUS_4                1                 54
  CLUS_5                5                 42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(302) Variable = HIAT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIAT1 MUTATED        1      6      2      0
  HIAT1 WILD-TYPE    203    131     45      3
D302V1, multiclass
        clus
vv       HIAT1 MUTATED HIAT1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             6             131
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIAT1 MUTATED        2      3      0      1      0
  HIAT1 WILD-TYPE     37     93     44     87     80
D302V2, multiclass
        clus
vv       HIAT1 MUTATED HIAT1 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIAT1 MUTATED        0      2      3      1      3
  HIAT1 WILD-TYPE     26     77     70     81     55
D302V3, multiclass
        clus
vv       HIAT1 MUTATED HIAT1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIAT1 MUTATED        1      6      1      1
  HIAT1 WILD-TYPE    126     45     70     68
D302V4, multiclass
        clus
vv       HIAT1 MUTATED HIAT1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             6              45
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIAT1 MUTATED        0      2      3      1      1
  HIAT1 WILD-TYPE     84     83     82     68     46
D302V5, multiclass
        clus
vv       HIAT1 MUTATED HIAT1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIAT1 MUTATED        1      1      0      5
  HIAT1 WILD-TYPE     94     73    121     75
D302V6, multiclass
        clus
vv       HIAT1 MUTATED HIAT1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIAT1 MUTATED        2      3      2      2      0      0
  HIAT1 WILD-TYPE     50     61     70    102     40     59
D302V7, multiclass
        clus
vv       HIAT1 MUTATED HIAT1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIAT1 MUTATED        8      1      0
  HIAT1 WILD-TYPE    209     74     99
D302V8, multiclass
        clus
vv       HIAT1 MUTATED HIAT1 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HIAT1 MUTATED        5      0      1
  HIAT1 WILD-TYPE    116    108     71
D302V9, multiclass
        clus
vv       HIAT1 MUTATED HIAT1 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             0             108
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIAT1 MUTATED        4      0      1      0      1
  HIAT1 WILD-TYPE     84     66     44     55     46
D302V10, multiclass
        clus
vv       HIAT1 MUTATED HIAT1 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(303) Variable = HSPG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPG2 MUTATED       23     34      4      0
  HSPG2 WILD-TYPE    181    103     43      3
D303V1, multiclass
        clus
vv       HSPG2 MUTATED HSPG2 WILD-TYPE
  CLUS_1            23             181
  CLUS_2            34             103
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSPG2 MUTATED        3     23     10     10      8
  HSPG2 WILD-TYPE     36     73     34     78     72
D303V2, multiclass
        clus
vv       HSPG2 MUTATED HSPG2 WILD-TYPE
  CLUS_1             3              36
  CLUS_2            23              73
  CLUS_3            10              34
  CLUS_4            10              78
  CLUS_5             8              72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSPG2 MUTATED        4     16      8      5     11
  HSPG2 WILD-TYPE     22     63     65     77     47
D303V3, multiclass
        clus
vv       HSPG2 MUTATED HSPG2 WILD-TYPE
  CLUS_1             4              22
  CLUS_2            16              63
  CLUS_3             8              65
  CLUS_4             5              77
  CLUS_5            11              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPG2 MUTATED       14     14     11      5
  HSPG2 WILD-TYPE    113     37     60     64
D303V4, multiclass
        clus
vv       HSPG2 MUTATED HSPG2 WILD-TYPE
  CLUS_1            14             113
  CLUS_2            14              37
  CLUS_3            11              60
  CLUS_4             5              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSPG2 MUTATED       10     13     22      9      6
  HSPG2 WILD-TYPE     74     72     63     60     41
D303V5, multiclass
        clus
vv       HSPG2 MUTATED HSPG2 WILD-TYPE
  CLUS_1            10              74
  CLUS_2            13              72
  CLUS_3            22              63
  CLUS_4             9              60
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPG2 MUTATED       15      9     17     19
  HSPG2 WILD-TYPE     80     65    104     61
D303V6, multiclass
        clus
vv       HSPG2 MUTATED HSPG2 WILD-TYPE
  CLUS_1            15              80
  CLUS_2             9              65
  CLUS_3            17             104
  CLUS_4            19              61
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HSPG2 MUTATED       11     12     15     12      4      8
  HSPG2 WILD-TYPE     41     52     57     92     36     51
D303V7, multiclass
        clus
vv       HSPG2 MUTATED HSPG2 WILD-TYPE
  CLUS_1            11              41
  CLUS_2            12              52
  CLUS_3            15              57
  CLUS_4            12              92
  CLUS_5             4              36
  CLUS_6             8              51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HSPG2 MUTATED       42      5     15
  HSPG2 WILD-TYPE    175     70     84
D303V8, multiclass
        clus
vv       HSPG2 MUTATED HSPG2 WILD-TYPE
  CLUS_1            42             175
  CLUS_2             5              70
  CLUS_3            15              84
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HSPG2 MUTATED       17     14     12
  HSPG2 WILD-TYPE    104     94     60
D303V9, multiclass
        clus
vv       HSPG2 MUTATED HSPG2 WILD-TYPE
  CLUS_1            17             104
  CLUS_2            14              94
  CLUS_3            12              60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSPG2 MUTATED       12      5      5     10     11
  HSPG2 WILD-TYPE     76     61     40     45     36
D303V10, multiclass
        clus
vv       HSPG2 MUTATED HSPG2 WILD-TYPE
  CLUS_1            12              76
  CLUS_2             5              61
  CLUS_3             5              40
  CLUS_4            10              45
  CLUS_5            11              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(304) Variable = NBN MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBN MUTATED        3      9      3      0
  NBN WILD-TYPE    201    128     44      3
D304V1, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           3           201
  CLUS_2           9           128
  CLUS_3           3            44
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBN MUTATED        2      7      1      3      0
  NBN WILD-TYPE     37     89     43     85     80
D304V2, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           2            37
  CLUS_2           7            89
  CLUS_3           1            43
  CLUS_4           3            85
  CLUS_5           0            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBN MUTATED        0      3      6      3      1
  NBN WILD-TYPE     26     76     67     79     57
D304V3, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           0            26
  CLUS_2           3            76
  CLUS_3           6            67
  CLUS_4           3            79
  CLUS_5           1            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBN MUTATED        5      5      0      3
  NBN WILD-TYPE    122     46     71     66
D304V4, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           5           122
  CLUS_2           5            46
  CLUS_3           0            71
  CLUS_4           3            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBN MUTATED        2      3      4      5      1
  NBN WILD-TYPE     82     82     81     64     46
D304V5, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           2            82
  CLUS_2           3            82
  CLUS_3           4            81
  CLUS_4           5            64
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NBN MUTATED        8      5      2      0
  NBN WILD-TYPE     87     69    119     80
D304V6, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           8            87
  CLUS_2           5            69
  CLUS_3           2           119
  CLUS_4           0            80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NBN MUTATED        5      2      1      3      2      2
  NBN WILD-TYPE     47     62     71    101     38     57
D304V7, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           5            47
  CLUS_2           2            62
  CLUS_3           1            71
  CLUS_4           3           101
  CLUS_5           2            38
  CLUS_6           2            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NBN MUTATED        9      4      2
  NBN WILD-TYPE    208     71     97
D304V8, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           9           208
  CLUS_2           4            71
  CLUS_3           2            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NBN MUTATED        7      3      3
  NBN WILD-TYPE    114    105     69
D304V9, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           7           114
  CLUS_2           3           105
  CLUS_3           3            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NBN MUTATED        4      2      1      1      5
  NBN WILD-TYPE     84     64     44     54     42
D304V10, multiclass
        clus
vv       NBN MUTATED NBN WILD-TYPE
  CLUS_1           4            84
  CLUS_2           2            64
  CLUS_3           1            44
  CLUS_4           1            54
  CLUS_5           5            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(305) Variable = ERBB3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED       10     24      1      0
  ERBB3 WILD-TYPE    194    113     46      3
D305V1, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            10             194
  CLUS_2            24             113
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB3 MUTATED        3     15      4      4      2
  ERBB3 WILD-TYPE     36     81     40     84     78
D305V2, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             3              36
  CLUS_2            15              81
  CLUS_3             4              40
  CLUS_4             4              84
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB3 MUTATED        2      9      5      3     10
  ERBB3 WILD-TYPE     24     70     68     79     48
D305V3, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             9              70
  CLUS_3             5              68
  CLUS_4             3              79
  CLUS_5            10              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED        6     11      7      5
  ERBB3 WILD-TYPE    121     40     64     64
D305V4, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             6             121
  CLUS_2            11              40
  CLUS_3             7              64
  CLUS_4             5              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB3 MUTATED        4      8     15      5      2
  ERBB3 WILD-TYPE     80     77     70     64     45
D305V5, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             4              80
  CLUS_2             8              77
  CLUS_3            15              70
  CLUS_4             5              64
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB3 MUTATED        9      8      4     13
  ERBB3 WILD-TYPE     86     66    117     67
D305V6, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             9              86
  CLUS_2             8              66
  CLUS_3             4             117
  CLUS_4            13              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERBB3 MUTATED        9     12      4      5      3      2
  ERBB3 WILD-TYPE     43     52     68     99     37     57
D305V7, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1             9              43
  CLUS_2            12              52
  CLUS_3             4              68
  CLUS_4             5              99
  CLUS_5             3              37
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB3 MUTATED       23      6      6
  ERBB3 WILD-TYPE    194     69     93
D305V8, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            23             194
  CLUS_2             6              69
  CLUS_3             6              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB3 MUTATED       13      6      7
  ERBB3 WILD-TYPE    108    102     65
D305V9, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            13             108
  CLUS_2             6             102
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB3 MUTATED       11      3      4      3      5
  ERBB3 WILD-TYPE     77     63     41     52     42
D305V10, multiclass
        clus
vv       ERBB3 MUTATED ERBB3 WILD-TYPE
  CLUS_1            11              77
  CLUS_2             3              63
  CLUS_3             4              41
  CLUS_4             3              52
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(306) Variable = IPO5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO5 MUTATED        9     12      0      0
  IPO5 WILD-TYPE    195    125     47      3
D306V1, multiclass
        clus
vv       IPO5 MUTATED IPO5 WILD-TYPE
  CLUS_1            9            195
  CLUS_2           12            125
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO5 MUTATED        4      9      1      3      0
  IPO5 WILD-TYPE     35     87     43     85     80
D306V2, multiclass
        clus
vv       IPO5 MUTATED IPO5 WILD-TYPE
  CLUS_1            4             35
  CLUS_2            9             87
  CLUS_3            1             43
  CLUS_4            3             85
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO5 MUTATED        0      7      5      4      3
  IPO5 WILD-TYPE     26     72     68     78     55
D306V3, multiclass
        clus
vv       IPO5 MUTATED IPO5 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            7             72
  CLUS_3            5             68
  CLUS_4            4             78
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO5 MUTATED        5      5      5      4
  IPO5 WILD-TYPE    122     46     66     65
D306V4, multiclass
        clus
vv       IPO5 MUTATED IPO5 WILD-TYPE
  CLUS_1            5            122
  CLUS_2            5             46
  CLUS_3            5             66
  CLUS_4            4             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO5 MUTATED        4      9      3      2      3
  IPO5 WILD-TYPE     80     76     82     67     44
D306V5, multiclass
        clus
vv       IPO5 MUTATED IPO5 WILD-TYPE
  CLUS_1            4             80
  CLUS_2            9             76
  CLUS_3            3             82
  CLUS_4            2             67
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO5 MUTATED        3      6      5      7
  IPO5 WILD-TYPE     92     68    116     73
D306V6, multiclass
        clus
vv       IPO5 MUTATED IPO5 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            6             68
  CLUS_3            5            116
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IPO5 MUTATED        2      5      4      7      1      2
  IPO5 WILD-TYPE     50     59     68     97     39     57
D306V7, multiclass
        clus
vv       IPO5 MUTATED IPO5 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            5             59
  CLUS_3            4             68
  CLUS_4            7             97
  CLUS_5            1             39
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IPO5 MUTATED       14      3      4
  IPO5 WILD-TYPE    203     72     95
D306V8, multiclass
        clus
vv       IPO5 MUTATED IPO5 WILD-TYPE
  CLUS_1           14            203
  CLUS_2            3             72
  CLUS_3            4             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IPO5 MUTATED        6      4      3
  IPO5 WILD-TYPE    115    104     69
D306V9, multiclass
        clus
vv       IPO5 MUTATED IPO5 WILD-TYPE
  CLUS_1            6            115
  CLUS_2            4            104
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO5 MUTATED        4      1      1      4      3
  IPO5 WILD-TYPE     84     65     44     51     44
D306V10, multiclass
        clus
vv       IPO5 MUTATED IPO5 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            4             51
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(307) Variable = MARVELD3 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARVELD3 MUTATED        4      7      0      0
  MARVELD3 WILD-TYPE    200    130     47      3
D307V1, multiclass
        clus
vv       MARVELD3 MUTATED MARVELD3 WILD-TYPE
  CLUS_1                4                200
  CLUS_2                7                130
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MARVELD3 MUTATED        0      8      0      2      0
  MARVELD3 WILD-TYPE     39     88     44     86     80
D307V2, multiclass
        clus
vv       MARVELD3 MUTATED MARVELD3 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                8                 88
  CLUS_3                0                 44
  CLUS_4                2                 86
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MARVELD3 MUTATED        0      4      3      2      1
  MARVELD3 WILD-TYPE     26     75     70     80     57
D307V3, multiclass
        clus
vv       MARVELD3 MUTATED MARVELD3 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                4                 75
  CLUS_3                3                 70
  CLUS_4                2                 80
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARVELD3 MUTATED        1      4      4      1
  MARVELD3 WILD-TYPE    126     47     67     68
D307V4, multiclass
        clus
vv       MARVELD3 MUTATED MARVELD3 WILD-TYPE
  CLUS_1                1                126
  CLUS_2                4                 47
  CLUS_3                4                 67
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MARVELD3 MUTATED        2      1      6      0      2
  MARVELD3 WILD-TYPE     82     84     79     69     45
D307V5, multiclass
        clus
vv       MARVELD3 MUTATED MARVELD3 WILD-TYPE
  CLUS_1                2                 82
  CLUS_2                1                 84
  CLUS_3                6                 79
  CLUS_4                0                 69
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARVELD3 MUTATED        3      1      2      5
  MARVELD3 WILD-TYPE     92     73    119     75
D307V6, multiclass
        clus
vv       MARVELD3 MUTATED MARVELD3 WILD-TYPE
  CLUS_1                3                 92
  CLUS_2                1                 73
  CLUS_3                2                119
  CLUS_4                5                 75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MARVELD3 MUTATED        5      3      1      1      0      2
  MARVELD3 WILD-TYPE     47     61     71    103     40     57
D307V7, multiclass
        clus
vv       MARVELD3 MUTATED MARVELD3 WILD-TYPE
  CLUS_1                5                 47
  CLUS_2                3                 61
  CLUS_3                1                 71
  CLUS_4                1                103
  CLUS_5                0                 40
  CLUS_6                2                 57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  MARVELD3 MUTATED        8      1      3
  MARVELD3 WILD-TYPE    209     74     96
D307V8, multiclass
        clus
vv       MARVELD3 MUTATED MARVELD3 WILD-TYPE
  CLUS_1                8                209
  CLUS_2                1                 74
  CLUS_3                3                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  MARVELD3 MUTATED        5      0      4
  MARVELD3 WILD-TYPE    116    108     68
D307V9, multiclass
        clus
vv       MARVELD3 MUTATED MARVELD3 WILD-TYPE
  CLUS_1                5                116
  CLUS_2                0                108
  CLUS_3                4                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MARVELD3 MUTATED        0      0      2      1      6
  MARVELD3 WILD-TYPE     88     66     43     54     41
D307V10, multiclass
        clus
vv       MARVELD3 MUTATED MARVELD3 WILD-TYPE
  CLUS_1                0                 88
  CLUS_2                0                 66
  CLUS_3                2                 43
  CLUS_4                1                 54
  CLUS_5                6                 41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(308) Variable = NOS3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOS3 MUTATED        4     10      1      0
  NOS3 WILD-TYPE    200    127     46      3
D308V1, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            4            200
  CLUS_2           10            127
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOS3 MUTATED        1      6      1      0      3
  NOS3 WILD-TYPE     38     90     43     88     77
D308V2, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            6             90
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOS3 MUTATED        2      6      3      0      1
  NOS3 WILD-TYPE     24     73     70     82     57
D308V3, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            6             73
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOS3 MUTATED        4      5      3      0
  NOS3 WILD-TYPE    123     46     68     69
D308V4, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            4            123
  CLUS_2            5             46
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOS3 MUTATED        2      1      7      1      4
  NOS3 WILD-TYPE     82     84     78     68     43
D308V5, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            1             84
  CLUS_3            7             78
  CLUS_4            1             68
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOS3 MUTATED        3      1      2      9
  NOS3 WILD-TYPE     92     73    119     71
D308V6, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            9             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOS3 MUTATED        4      6      2      1      0      2
  NOS3 WILD-TYPE     48     58     70    103     40     57
D308V7, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            6             58
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOS3 MUTATED       11      1      3
  NOS3 WILD-TYPE    206     74     96
D308V8, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1           11            206
  CLUS_2            1             74
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOS3 MUTATED        4      1      4
  NOS3 WILD-TYPE    117    107     68
D308V9, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            1            107
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOS3 MUTATED        3      0      1      1      4
  NOS3 WILD-TYPE     85     66     44     54     43
D308V10, multiclass
        clus
vv       NOS3 MUTATED NOS3 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(309) Variable = TAS2R42 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R42 MUTATED        3      3      0      0
  TAS2R42 WILD-TYPE    201    134     47      3
D309V1, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               3               201
  CLUS_2               3               134
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R42 MUTATED        0      1      2      3      0
  TAS2R42 WILD-TYPE     39     95     42     85     80
D309V2, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               1                95
  CLUS_3               2                42
  CLUS_4               3                85
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R42 MUTATED        0      2      0      1      1
  TAS2R42 WILD-TYPE     26     77     73     81     57
D309V3, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               0                73
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R42 MUTATED        1      0      1      2
  TAS2R42 WILD-TYPE    126     51     70     67
D309V4, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               0                51
  CLUS_3               1                70
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R42 MUTATED        2      2      1      1      0
  TAS2R42 WILD-TYPE     82     83     84     68     47
D309V5, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               2                82
  CLUS_2               2                83
  CLUS_3               1                84
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAS2R42 MUTATED        1      2      1      2
  TAS2R42 WILD-TYPE     94     72    120     78
D309V6, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               2                72
  CLUS_3               1               120
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAS2R42 MUTATED        0      1      2      0      1      2
  TAS2R42 WILD-TYPE     52     63     70    104     39     57
D309V7, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               0                52
  CLUS_2               1                63
  CLUS_3               2                70
  CLUS_4               0               104
  CLUS_5               1                39
  CLUS_6               2                57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAS2R42 MUTATED        2      1      3
  TAS2R42 WILD-TYPE    215     74     96
D309V8, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               2               215
  CLUS_2               1                74
  CLUS_3               3                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TAS2R42 MUTATED        3      0      2
  TAS2R42 WILD-TYPE    118    108     70
D309V9, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               0               108
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAS2R42 MUTATED        2      0      0      1      2
  TAS2R42 WILD-TYPE     86     66     45     54     45
D309V10, multiclass
        clus
vv       TAS2R42 MUTATED TAS2R42 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               1                54
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(310) Variable = ANKRD20A4 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD20A4 MUTATED        2      4      1      0
  ANKRD20A4 WILD-TYPE    202    133     46      3
D310V1, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 2                 202
  CLUS_2                 4                 133
  CLUS_3                 1                  46
  CLUS_4                 0                   3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD20A4 MUTATED        0      6      0      1      0
  ANKRD20A4 WILD-TYPE     39     90     44     87     80
D310V2, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 0                  39
  CLUS_2                 6                  90
  CLUS_3                 0                  44
  CLUS_4                 1                  87
  CLUS_5                 0                  80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD20A4 MUTATED        0      3      2      0      1
  ANKRD20A4 WILD-TYPE     26     76     71     82     57
D310V3, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 0                  26
  CLUS_2                 3                  76
  CLUS_3                 2                  71
  CLUS_4                 0                  82
  CLUS_5                 1                  57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD20A4 MUTATED        0      3      2      1
  ANKRD20A4 WILD-TYPE    127     48     69     68
D310V4, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 0                 127
  CLUS_2                 3                  48
  CLUS_3                 2                  69
  CLUS_4                 1                  68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD20A4 MUTATED        0      1      2      0      4
  ANKRD20A4 WILD-TYPE     84     84     83     69     43
D310V5, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 0                  84
  CLUS_2                 1                  84
  CLUS_3                 2                  83
  CLUS_4                 0                  69
  CLUS_5                 4                  43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD20A4 MUTATED        1      1      0      5
  ANKRD20A4 WILD-TYPE     94     73    121     75
D310V6, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 1                  94
  CLUS_2                 1                  73
  CLUS_3                 0                 121
  CLUS_4                 5                  75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANKRD20A4 MUTATED        3      0      2      2      0      0
  ANKRD20A4 WILD-TYPE     49     64     70    102     40     59
D310V7, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 3                  49
  CLUS_2                 0                  64
  CLUS_3                 2                  70
  CLUS_4                 2                 102
  CLUS_5                 0                  40
  CLUS_6                 0                  59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  ANKRD20A4 MUTATED        6      1      0
  ANKRD20A4 WILD-TYPE    211     74     99
D310V8, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 6                 211
  CLUS_2                 1                  74
  CLUS_3                 0                  99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  ANKRD20A4 MUTATED        4      1      1
  ANKRD20A4 WILD-TYPE    117    107     71
D310V9, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 4                 117
  CLUS_2                 1                 107
  CLUS_3                 1                  71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD20A4 MUTATED        3      1      0      0      2
  ANKRD20A4 WILD-TYPE     85     65     45     55     45
D310V10, multiclass
        clus
vv       ANKRD20A4 MUTATED ANKRD20A4 WILD-TYPE
  CLUS_1                 3                  85
  CLUS_2                 1                  65
  CLUS_3                 0                  45
  CLUS_4                 0                  55
  CLUS_5                 2                  45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(311) Variable = UGP2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGP2 MUTATED        0      9      0      0
  UGP2 WILD-TYPE    204    128     47      3
D311V1, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            9            128
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGP2 MUTATED        0      6      1      0      1
  UGP2 WILD-TYPE     39     90     43     88     79
D311V2, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            6             90
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGP2 MUTATED        0      4      2      0      2
  UGP2 WILD-TYPE     26     75     71     82     56
D311V3, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGP2 MUTATED        1      4      3      0
  UGP2 WILD-TYPE    126     47     68     69
D311V4, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            4             47
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGP2 MUTATED        0      0      6      0      2
  UGP2 WILD-TYPE     84     85     79     69     45
D311V5, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            6             79
  CLUS_4            0             69
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGP2 MUTATED        1      0      1      6
  UGP2 WILD-TYPE     94     74    120     74
D311V6, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            0             74
  CLUS_3            1            120
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UGP2 MUTATED        4      2      1      2      0      0
  UGP2 WILD-TYPE     48     62     71    102     40     59
D311V7, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            2             62
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UGP2 MUTATED        7      2      0
  UGP2 WILD-TYPE    210     73     99
D311V8, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            2             73
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UGP2 MUTATED        5      1      2
  UGP2 WILD-TYPE    116    107     70
D311V9, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGP2 MUTATED        3      1      1      0      3
  UGP2 WILD-TYPE     85     65     44     55     44
D311V10, multiclass
        clus
vv       UGP2 MUTATED UGP2 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(312) Variable = KLHDC8B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHDC8B MUTATED        2      6      2      0
  KLHDC8B WILD-TYPE    202    131     45      3
D312V1, multiclass
        clus
vv       KLHDC8B MUTATED KLHDC8B WILD-TYPE
  CLUS_1               2               202
  CLUS_2               6               131
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHDC8B MUTATED        2      4      3      0      0
  KLHDC8B WILD-TYPE     37     92     41     88     80
D312V2, multiclass
        clus
vv       KLHDC8B MUTATED KLHDC8B WILD-TYPE
  CLUS_1               2                37
  CLUS_2               4                92
  CLUS_3               3                41
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHDC8B MUTATED        1      3      4      0      2
  KLHDC8B WILD-TYPE     25     76     69     82     56
D312V3, multiclass
        clus
vv       KLHDC8B MUTATED KLHDC8B WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                76
  CLUS_3               4                69
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHDC8B MUTATED        4      3      2      1
  KLHDC8B WILD-TYPE    123     48     69     68
D312V4, multiclass
        clus
vv       KLHDC8B MUTATED KLHDC8B WILD-TYPE
  CLUS_1               4               123
  CLUS_2               3                48
  CLUS_3               2                69
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHDC8B MUTATED        1      3      4      1      0
  KLHDC8B WILD-TYPE     83     82     81     68     47
D312V5, multiclass
        clus
vv       KLHDC8B MUTATED KLHDC8B WILD-TYPE
  CLUS_1               1                83
  CLUS_2               3                82
  CLUS_3               4                81
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHDC8B MUTATED        2      2      1      4
  KLHDC8B WILD-TYPE     93     72    120     76
D312V6, multiclass
        clus
vv       KLHDC8B MUTATED KLHDC8B WILD-TYPE
  CLUS_1               2                93
  CLUS_2               2                72
  CLUS_3               1               120
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLHDC8B MUTATED        3      1      2      3      0      1
  KLHDC8B WILD-TYPE     49     63     70    101     40     58
D312V7, multiclass
        clus
vv       KLHDC8B MUTATED KLHDC8B WILD-TYPE
  CLUS_1               3                49
  CLUS_2               1                63
  CLUS_3               2                70
  CLUS_4               3               101
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KLHDC8B MUTATED        6      2      2
  KLHDC8B WILD-TYPE    211     73     97
D312V8, multiclass
        clus
vv       KLHDC8B MUTATED KLHDC8B WILD-TYPE
  CLUS_1               6               211
  CLUS_2               2                73
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KLHDC8B MUTATED        2      1      2
  KLHDC8B WILD-TYPE    119    107     70
D312V9, multiclass
        clus
vv       KLHDC8B MUTATED KLHDC8B WILD-TYPE
  CLUS_1               2               119
  CLUS_2               1               107
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHDC8B MUTATED        2      2      0      0      1
  KLHDC8B WILD-TYPE     86     64     45     55     46
D312V10, multiclass
        clus
vv       KLHDC8B MUTATED KLHDC8B WILD-TYPE
  CLUS_1               2                86
  CLUS_2               2                64
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(313) Variable = ABCB6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB6 MUTATED        0     11      1      0
  ABCB6 WILD-TYPE    204    126     46      3
D313V1, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCB6 MUTATED        1      5      2      0      2
  ABCB6 WILD-TYPE     38     91     42     88     78
D313V2, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCB6 MUTATED        1      5      2      0      2
  ABCB6 WILD-TYPE     25     74     71     82     56
D313V3, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB6 MUTATED        3      2      4      1
  ABCB6 WILD-TYPE    124     49     67     68
D313V4, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             2              49
  CLUS_3             4              67
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCB6 MUTATED        0      1      5      2      2
  ABCB6 WILD-TYPE     84     84     80     67     45
D313V5, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             5              80
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB6 MUTATED        3      1      3      3
  ABCB6 WILD-TYPE     92     73    118     77
D313V6, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             3             118
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCB6 MUTATED        1      6      5      0      0      0
  ABCB6 WILD-TYPE     51     58     67    104     40     59
D313V7, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             6              58
  CLUS_3             5              67
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB6 MUTATED       11      0      1
  ABCB6 WILD-TYPE    206     75     98
D313V8, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB6 MUTATED        5      0      5
  ABCB6 WILD-TYPE    116    108     67
D313V9, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             0             108
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCB6 MUTATED        2      0      3      0      5
  ABCB6 WILD-TYPE     86     66     42     55     42
D313V10, multiclass
        clus
vv       ABCB6 MUTATED ABCB6 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(314) Variable = TMC4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMC4 MUTATED        4     10      1      0
  TMC4 WILD-TYPE    200    127     46      3
D314V1, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            4            200
  CLUS_2           10            127
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMC4 MUTATED        2      4      1      3      4
  TMC4 WILD-TYPE     37     92     43     85     76
D314V2, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            4             92
  CLUS_3            1             43
  CLUS_4            3             85
  CLUS_5            4             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMC4 MUTATED        0      4      2      5      2
  TMC4 WILD-TYPE     26     75     71     77     56
D314V3, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            2             71
  CLUS_4            5             77
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMC4 MUTATED        0      4      3      6
  TMC4 WILD-TYPE    127     47     68     63
D314V4, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            4             47
  CLUS_3            3             68
  CLUS_4            6             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMC4 MUTATED        1      4      5      2      0
  TMC4 WILD-TYPE     83     81     80     67     47
D314V5, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            4             81
  CLUS_3            5             80
  CLUS_4            2             67
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMC4 MUTATED        3      4      3      2
  TMC4 WILD-TYPE     92     70    118     78
D314V6, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            4             70
  CLUS_3            3            118
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMC4 MUTATED        2      4      3      5      0      1
  TMC4 WILD-TYPE     50     60     69     99     40     58
D314V7, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            4             60
  CLUS_3            3             69
  CLUS_4            5             99
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC4 MUTATED        8      4      3
  TMC4 WILD-TYPE    209     71     96
D314V8, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            8            209
  CLUS_2            4             71
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC4 MUTATED        4      6      3
  TMC4 WILD-TYPE    117    102     69
D314V9, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            6            102
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMC4 MUTATED        3      3      2      3      2
  TMC4 WILD-TYPE     85     63     43     52     45
D314V10, multiclass
        clus
vv       TMC4 MUTATED TMC4 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            3             63
  CLUS_3            2             43
  CLUS_4            3             52
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(315) Variable = TM6SF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM6SF1 MUTATED        0      8      0      0
  TM6SF1 WILD-TYPE    204    129     47      3
D315V1, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              8              129
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TM6SF1 MUTATED        0      4      2      0      0
  TM6SF1 WILD-TYPE     39     92     42     88     80
D315V2, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TM6SF1 MUTATED        0      3      4      1      0
  TM6SF1 WILD-TYPE     26     76     69     81     58
D315V3, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM6SF1 MUTATED        1      4      2      1
  TM6SF1 WILD-TYPE    126     47     69     68
D315V4, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              4               47
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TM6SF1 MUTATED        0      0      5      0      2
  TM6SF1 WILD-TYPE     84     85     80     69     45
D315V5, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              5               80
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM6SF1 MUTATED        2      2      0      3
  TM6SF1 WILD-TYPE     93     72    121     77
D315V6, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TM6SF1 MUTATED        0      4      1      2      1      0
  TM6SF1 WILD-TYPE     52     60     71    102     39     59
D315V7, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM6SF1 MUTATED        6      2      0
  TM6SF1 WILD-TYPE    211     73     99
D315V8, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              2               73
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM6SF1 MUTATED        0      1      4
  TM6SF1 WILD-TYPE    121    107     68
D315V9, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              0              121
  CLUS_2              1              107
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TM6SF1 MUTATED        2      1      2      0      0
  TM6SF1 WILD-TYPE     86     65     43     55     47
D315V10, multiclass
        clus
vv       TM6SF1 MUTATED TM6SF1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(316) Variable = ARID1B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1B MUTATED        4     19      2      0
  ARID1B WILD-TYPE    200    118     45      3
D316V1, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              4              200
  CLUS_2             19              118
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1B MUTATED        1     10      3      1      2
  ARID1B WILD-TYPE     38     86     41     87     78
D316V2, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              1               38
  CLUS_2             10               86
  CLUS_3              3               41
  CLUS_4              1               87
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1B MUTATED        1     10      6      2      4
  ARID1B WILD-TYPE     25     69     67     80     54
D316V3, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              1               25
  CLUS_2             10               69
  CLUS_3              6               67
  CLUS_4              2               80
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1B MUTATED        5      8      8      2
  ARID1B WILD-TYPE    122     43     63     67
D316V4, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              5              122
  CLUS_2              8               43
  CLUS_3              8               63
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1B MUTATED        1      5     11      4      2
  ARID1B WILD-TYPE     83     80     74     65     45
D316V5, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              1               83
  CLUS_2              5               80
  CLUS_3             11               74
  CLUS_4              4               65
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID1B MUTATED        5      5      4      9
  ARID1B WILD-TYPE     90     69    117     71
D316V6, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              5               90
  CLUS_2              5               69
  CLUS_3              4              117
  CLUS_4              9               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID1B MUTATED        4     10      6      4      2      0
  ARID1B WILD-TYPE     48     54     66    100     38     59
D316V7, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              4               48
  CLUS_2             10               54
  CLUS_3              6               66
  CLUS_4              4              100
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1B MUTATED       22      3      1
  ARID1B WILD-TYPE    195     72     98
D316V8, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1             22              195
  CLUS_2              3               72
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID1B MUTATED        8      1      5
  ARID1B WILD-TYPE    113    107     67
D316V9, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              8              113
  CLUS_2              1              107
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID1B MUTATED        3      1      3      0      7
  ARID1B WILD-TYPE     85     65     42     55     40
D316V10, multiclass
        clus
vv       ARID1B MUTATED ARID1B WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              7               40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(317) Variable = TNKS1BP1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS1BP1 MUTATED        7     17      2      0
  TNKS1BP1 WILD-TYPE    197    120     45      3
D317V1, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                7                197
  CLUS_2               17                120
  CLUS_3                2                 45
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNKS1BP1 MUTATED        4     10      3      0      5
  TNKS1BP1 WILD-TYPE     35     86     41     88     75
D317V2, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                4                 35
  CLUS_2               10                 86
  CLUS_3                3                 41
  CLUS_4                0                 88
  CLUS_5                5                 75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNKS1BP1 MUTATED        2      8      4      2      7
  TNKS1BP1 WILD-TYPE     24     71     69     80     51
D317V3, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                8                 71
  CLUS_3                4                 69
  CLUS_4                2                 80
  CLUS_5                7                 51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS1BP1 MUTATED        6      9      7      1
  TNKS1BP1 WILD-TYPE    121     42     64     68
D317V4, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                6                121
  CLUS_2                9                 42
  CLUS_3                7                 64
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNKS1BP1 MUTATED        3      3     12      6      1
  TNKS1BP1 WILD-TYPE     81     82     73     63     46
D317V5, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                3                 81
  CLUS_2                3                 82
  CLUS_3               12                 73
  CLUS_4                6                 63
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNKS1BP1 MUTATED        9      2      6      8
  TNKS1BP1 WILD-TYPE     86     72    115     72
D317V6, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                9                 86
  CLUS_2                2                 72
  CLUS_3                6                115
  CLUS_4                8                 72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNKS1BP1 MUTATED        7      8      4      5      0      3
  TNKS1BP1 WILD-TYPE     45     56     68     99     40     56
D317V7, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                7                 45
  CLUS_2                8                 56
  CLUS_3                4                 68
  CLUS_4                5                 99
  CLUS_5                0                 40
  CLUS_6                3                 56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TNKS1BP1 MUTATED       20      2      5
  TNKS1BP1 WILD-TYPE    197     73     94
D317V8, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1               20                197
  CLUS_2                2                 73
  CLUS_3                5                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TNKS1BP1 MUTATED       11      4      6
  TNKS1BP1 WILD-TYPE    110    104     66
D317V9, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1               11                110
  CLUS_2                4                104
  CLUS_3                6                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNKS1BP1 MUTATED        7      0      4      3      7
  TNKS1BP1 WILD-TYPE     81     66     41     52     40
D317V10, multiclass
        clus
vv       TNKS1BP1 MUTATED TNKS1BP1 WILD-TYPE
  CLUS_1                7                 81
  CLUS_2                0                 66
  CLUS_3                4                 41
  CLUS_4                3                 52
  CLUS_5                7                 40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(318) Variable = ERBB2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED        3     11      5      0
  ERBB2 WILD-TYPE    201    126     42      3
D318V1, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            11             126
  CLUS_3             5              42
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB2 MUTATED        0      9      5      1      1
  ERBB2 WILD-TYPE     39     87     39     87     79
D318V2, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             9              87
  CLUS_3             5              39
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB2 MUTATED        1      5      3      2      4
  ERBB2 WILD-TYPE     25     74     70     80     54
D318V3, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED        5      4      4      2
  ERBB2 WILD-TYPE    122     47     67     67
D318V4, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             4              47
  CLUS_3             4              67
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB2 MUTATED        0      3      9      4      2
  ERBB2 WILD-TYPE     84     82     76     65     45
D318V5, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             9              76
  CLUS_4             4              65
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB2 MUTATED        6      3      4      5
  ERBB2 WILD-TYPE     89     71    117     75
D318V6, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             3              71
  CLUS_3             4             117
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERBB2 MUTATED        5      7      4      1      2      0
  ERBB2 WILD-TYPE     47     57     68    103     38     59
D318V7, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             7              57
  CLUS_3             4              68
  CLUS_4             1             103
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED       15      2      2
  ERBB2 WILD-TYPE    202     73     97
D318V8, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1            15             202
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB2 MUTATED        4      3      7
  ERBB2 WILD-TYPE    117    105     65
D318V9, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             3             105
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB2 MUTATED        6      0      5      0      3
  ERBB2 WILD-TYPE     82     66     40     55     44
D318V10, multiclass
        clus
vv       ERBB2 MUTATED ERBB2 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             0              66
  CLUS_3             5              40
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(319) Variable = FAM70B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM70B MUTATED        1     11      1      0
  FAM70B WILD-TYPE    203    126     46      3
D319V1, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              1              203
  CLUS_2             11              126
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM70B MUTATED        1      7      0      0      1
  FAM70B WILD-TYPE     38     89     44     88     79
D319V2, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              1               38
  CLUS_2              7               89
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM70B MUTATED        1      4      2      1      3
  FAM70B WILD-TYPE     25     75     71     81     55
D319V3, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              1               25
  CLUS_2              4               75
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM70B MUTATED        3      5      2      1
  FAM70B WILD-TYPE    124     46     69     68
D319V4, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              3              124
  CLUS_2              5               46
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM70B MUTATED        0      2      6      1      3
  FAM70B WILD-TYPE     84     83     79     68     44
D319V5, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM70B MUTATED        2      2      1      7
  FAM70B WILD-TYPE     93     72    120     73
D319V6, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM70B MUTATED        3      4      4      2      0      0
  FAM70B WILD-TYPE     49     60     68    102     40     59
D319V7, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              3               49
  CLUS_2              4               60
  CLUS_3              4               68
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM70B MUTATED       11      2      0
  FAM70B WILD-TYPE    206     73     99
D319V8, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1             11              206
  CLUS_2              2               73
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM70B MUTATED        2      1      4
  FAM70B WILD-TYPE    119    107     68
D319V9, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              2              119
  CLUS_2              1              107
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM70B MUTATED        2      1      1      0      3
  FAM70B WILD-TYPE     86     65     44     55     44
D319V10, multiclass
        clus
vv       FAM70B MUTATED FAM70B WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(320) Variable = MYEOV MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYEOV MUTATED        0      8      1      0
  MYEOV WILD-TYPE    204    129     46      3
D320V1, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             0             204
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYEOV MUTATED        1      6      1      0      0
  MYEOV WILD-TYPE     38     90     43     88     80
D320V2, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYEOV MUTATED        0      3      2      0      2
  MYEOV WILD-TYPE     26     76     71     82     56
D320V3, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYEOV MUTATED        0      5      2      0
  MYEOV WILD-TYPE    127     46     69     69
D320V4, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             0             127
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYEOV MUTATED        0      0      6      1      2
  MYEOV WILD-TYPE     84     85     79     68     45
D320V5, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYEOV MUTATED        3      0      0      6
  MYEOV WILD-TYPE     92     74    121     74
D320V6, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             3              92
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYEOV MUTATED        5      2      1      1      0      0
  MYEOV WILD-TYPE     47     62     71    103     40     59
D320V7, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             5              47
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYEOV MUTATED        9      0      0
  MYEOV WILD-TYPE    208     75     99
D320V8, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             9             208
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYEOV MUTATED        3      2      2
  MYEOV WILD-TYPE    118    106     70
D320V9, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYEOV MUTATED        4      0      0      0      3
  MYEOV WILD-TYPE     84     66     45     55     44
D320V10, multiclass
        clus
vv       MYEOV MUTATED MYEOV WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(321) Variable = IRS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS1 MUTATED        0     18      3      0
  IRS1 WILD-TYPE    204    119     44      3
D321V1, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            0            204
  CLUS_2           18            119
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS1 MUTATED        2     10      3      0      3
  IRS1 WILD-TYPE     37     86     41     88     77
D321V2, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            2             37
  CLUS_2           10             86
  CLUS_3            3             41
  CLUS_4            0             88
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS1 MUTATED        2      4      3      1      8
  IRS1 WILD-TYPE     24     75     70     81     50
D321V3, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            4             75
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            8             50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS1 MUTATED        5      8      3      2
  IRS1 WILD-TYPE    122     43     68     67
D321V4, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            5            122
  CLUS_2            8             43
  CLUS_3            3             68
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS1 MUTATED        1      4     12      2      2
  IRS1 WILD-TYPE     83     81     73     67     45
D321V5, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            4             81
  CLUS_3           12             73
  CLUS_4            2             67
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS1 MUTATED        3      2      3     13
  IRS1 WILD-TYPE     92     72    118     67
D321V6, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            2             72
  CLUS_3            3            118
  CLUS_4           13             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRS1 MUTATED        7      8      2      4      0      0
  IRS1 WILD-TYPE     45     56     70    100     40     59
D321V7, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            7             45
  CLUS_2            8             56
  CLUS_3            2             70
  CLUS_4            4            100
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS1 MUTATED       18      3      0
  IRS1 WILD-TYPE    199     72     99
D321V8, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1           18            199
  CLUS_2            3             72
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS1 MUTATED        7      2      7
  IRS1 WILD-TYPE    114    106     65
D321V9, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            7            114
  CLUS_2            2            106
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS1 MUTATED        6      1      4      0      5
  IRS1 WILD-TYPE     82     65     41     55     42
D321V10, multiclass
        clus
vv       IRS1 MUTATED IRS1 WILD-TYPE
  CLUS_1            6             82
  CLUS_2            1             65
  CLUS_3            4             41
  CLUS_4            0             55
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(322) Variable = WDR5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5 MUTATED        0      4      1      0
  WDR5 WILD-TYPE    204    133     46      3
D322V1, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            4            133
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR5 MUTATED        0      1      0      1      0
  WDR5 WILD-TYPE     39     95     44     87     80
D322V2, multiclass
[1] "Remove cluster labels:" "WDR5 MUTATED"          
clus
  WDR5 MUTATED WDR5 WILD-TYPE 
             2            345 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-7704     TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7716 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723     TCGA-BR-7851 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8060     TCGA-BR-8077 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8078     TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8285     TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8360     TCGA-BR-8361 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8366 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8367     TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8484     TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8588     TCGA-BR-8589     TCGA-BR-8590     TCGA-BR-8591 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8686     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A44U     TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J2 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A4J4     TCGA-BR-A4J5     TCGA-BR-A4J6     TCGA-BR-A4J7 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4PE     TCGA-BR-A4PF 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A4QI     TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-5799     TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-5803     TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8528 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-8533     TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48A 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-A4MJ     TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-5716 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8573 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576     TCGA-D7-8578 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU     TCGA-D7-A4YV 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-A4YX     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-D7-A6ET 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-A6EV     TCGA-D7-A6EX     TCGA-D7-A6EY     TCGA-D7-A6EZ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-A6F0     TCGA-D7-A6F2     TCGA-D7-A747     TCGA-D7-A748 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-A74A     TCGA-D7-A74B     TCGA-EQ-5647     TCGA-EQ-8122 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-EQ-A4SO     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-F1-A448     TCGA-F1-A72C     TCGA-FP-7735     TCGA-FP-7829 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-FP-8210     TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-FP-A4BF     TCGA-FP-A8CX     TCGA-FP-A9TM     TCGA-HF-7131 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HF-7132     TCGA-HF-7133     TCGA-HF-7134     TCGA-HF-7136 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HF-A5NB     TCGA-HJ-7597     TCGA-HU-8238     TCGA-HU-8243 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-8244     TCGA-HU-8249     TCGA-HU-8602     TCGA-HU-8604 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-8608     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4G3 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-A4G6     TCGA-HU-A4G8     TCGA-HU-A4G9     TCGA-HU-A4GC 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GJ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GT 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-A4GU     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H0 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-A4H2     TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-A4H6     TCGA-HU-A4H8     TCGA-HU-A4HB     TCGA-HU-A4HD 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IN-A6RI     TCGA-IN-A6RJ     TCGA-IN-A6RL     TCGA-IN-A6RN 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IN-A6RO     TCGA-IN-A6RP     TCGA-IN-A6RR     TCGA-IN-A6RS 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IN-A7NR     TCGA-IN-A7NT     TCGA-IN-A7NU     TCGA-IN-AB1V 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IN-AB1X     TCGA-IP-7968     TCGA-KB-A6F5     TCGA-KB-A6F7 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-KB-A93G     TCGA-KB-A93J     TCGA-MX-A5UG     TCGA-MX-A5UJ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-MX-A663     TCGA-MX-A666     TCGA-R5-A7O7     TCGA-R5-A7ZE 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-R5-A7ZF     TCGA-R5-A7ZI     TCGA-R5-A7ZR     TCGA-R5-A804 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-R5-A805     TCGA-RD-A7BS     TCGA-RD-A7BT     TCGA-RD-A7BW 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-RD-A7C1     TCGA-RD-A8MV     TCGA-RD-A8MW     TCGA-RD-A8N0 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-RD-A8N1     TCGA-RD-A8N2     TCGA-RD-A8N4     TCGA-RD-A8N5 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-RD-A8N6     TCGA-RD-A8N9     TCGA-SW-A7EA     TCGA-SW-A7EB 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-A8DL     TCGA-VQ-A8DT     TCGA-VQ-A8DU     TCGA-VQ-A8DV 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-A8DZ     TCGA-VQ-A8E2     TCGA-VQ-A8E7     TCGA-VQ-A8P2 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-A8P3     TCGA-VQ-A8PE     TCGA-VQ-A8PK     TCGA-VQ-A8PM 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-A8PQ     TCGA-VQ-A91Q     TCGA-VQ-A91U     TCGA-VQ-A91V 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-A92D     TCGA-VQ-A94T     TCGA-VQ-AA64     TCGA-VQ-AA68 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-AA69     TCGA-VQ-AA6A     TCGA-VQ-AA6B     TCGA-VQ-AA6F 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-AA6G     TCGA-VQ-AA6I     TCGA-VQ-AA6J     TCGA-VQ-AA6K 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-ZA-A8F6 
"WDR5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR5 MUTATED        0      1      1      2      1
  WDR5 WILD-TYPE     26     78     72     80     57
D322V3, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            1             72
  CLUS_4            2             80
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5 MUTATED        0      2      1      2
  WDR5 WILD-TYPE    127     49     70     67
D322V4, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            2             49
  CLUS_3            1             70
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR5 MUTATED        1      2      0      1      1
  WDR5 WILD-TYPE     83     83     85     68     46
D322V5, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            2             83
  CLUS_3            0             85
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR5 MUTATED        2      2      0      1
  WDR5 WILD-TYPE     93     72    121     79
D322V6, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            1             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR5 MUTATED        0      3      1      1      0      0
  WDR5 WILD-TYPE     52     61     71    103     40     59
D322V7, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            3             61
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR5 MUTATED        3      1      1
  WDR5 WILD-TYPE    214     74     98
D322V8, multiclass
        clus
vv       WDR5 MUTATED WDR5 WILD-TYPE
  CLUS_1            3            214
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WDR5 MUTATED        1      0      1
  WDR5 WILD-TYPE    120    108     71
D322V9, multiclass
[1] "Remove cluster labels:" "WDR5 MUTATED"          
clus
  WDR5 MUTATED WDR5 WILD-TYPE 
             2            299 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-7704     TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7717 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8060     TCGA-BR-8077     TCGA-BR-8078     TCGA-BR-8080 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8360     TCGA-BR-8361 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8368 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485     TCGA-BR-8486 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590     TCGA-BR-8591 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A452 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR     TCGA-BR-A4CS 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A4J1     TCGA-BR-A4J5     TCGA-BR-A4J6     TCGA-BR-A4J7 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI     TCGA-BR-A4QL 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8533     TCGA-CD-8534     TCGA-CD-8535 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5716 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8574 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-8575     TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-A4YT     TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YY 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-D7-A6ET     TCGA-D7-A6EV     TCGA-D7-A6EX 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-A6EY     TCGA-D7-A6EZ     TCGA-D7-A6F0     TCGA-D7-A6F2 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-A747     TCGA-D7-A748     TCGA-D7-A74A     TCGA-D7-A74B 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE     TCGA-FP-A9TM 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7134     TCGA-HF-7136 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-8238     TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GJ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GX 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H4     TCGA-HU-A4H5 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-A4H6     TCGA-HU-A4H8     TCGA-HU-A4HB     TCGA-IN-7806 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663     TCGA-IN-A6RI 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IN-A6RJ     TCGA-IN-A6RL     TCGA-IN-A6RN     TCGA-IN-A6RP 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IN-A7NR     TCGA-IN-A7NT     TCGA-IN-A7NU     TCGA-IN-AB1V 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IN-AB1X     TCGA-IP-7968     TCGA-KB-A6F5     TCGA-KB-A6F7 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-KB-A93J     TCGA-MX-A5UG     TCGA-MX-A5UJ     TCGA-MX-A663 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-MX-A666     TCGA-R5-A7O7     TCGA-R5-A7ZE     TCGA-R5-A7ZF 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-R5-A7ZI     TCGA-R5-A7ZR     TCGA-R5-A804     TCGA-R5-A805 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-RD-A7BS     TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-RD-A8N5 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-RD-A8N6     TCGA-RD-A8N9     TCGA-SW-A7EA     TCGA-SW-A7EB 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-A8DL     TCGA-VQ-A8DU     TCGA-VQ-A8DV     TCGA-VQ-A8E2 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3     TCGA-VQ-A8PE 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ     TCGA-VQ-A91Q 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-A94T 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-AA64     TCGA-VQ-AA68     TCGA-VQ-AA69     TCGA-VQ-AA6A 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-AA6B     TCGA-VQ-AA6F     TCGA-VQ-AA6G     TCGA-VQ-AA6I 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-AA6J     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR5 MUTATED        1      0      1      0      0
  WDR5 WILD-TYPE     87     66     44     55     47
D322V10, multiclass
[1] "Remove cluster labels:" "WDR5 MUTATED"          
clus
  WDR5 MUTATED WDR5 WILD-TYPE 
             2            299 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-7704     TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7717 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8060     TCGA-BR-8077     TCGA-BR-8078     TCGA-BR-8080 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8360     TCGA-BR-8361 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8368 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485     TCGA-BR-8486 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590     TCGA-BR-8591 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A452 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR     TCGA-BR-A4CS 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A4J1     TCGA-BR-A4J5     TCGA-BR-A4J6     TCGA-BR-A4J7 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI     TCGA-BR-A4QL 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8533     TCGA-CD-8534     TCGA-CD-8535 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5716 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8574 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-8575     TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-A4YT     TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YY 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-D7-A6ET     TCGA-D7-A6EV     TCGA-D7-A6EX 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-A6EY     TCGA-D7-A6EZ     TCGA-D7-A6F0     TCGA-D7-A6F2 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-D7-A747     TCGA-D7-A748     TCGA-D7-A74A     TCGA-D7-A74B 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE     TCGA-FP-A9TM 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7134     TCGA-HF-7136 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-8238     TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GJ 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GX 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H4     TCGA-HU-A4H5 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-HU-A4H6     TCGA-HU-A4H8     TCGA-HU-A4HB     TCGA-IN-7806 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663     TCGA-IN-A6RI 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IN-A6RJ     TCGA-IN-A6RL     TCGA-IN-A6RN     TCGA-IN-A6RP 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IN-A7NR     TCGA-IN-A7NT     TCGA-IN-A7NU     TCGA-IN-AB1V 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-IN-AB1X     TCGA-IP-7968     TCGA-KB-A6F5     TCGA-KB-A6F7 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-KB-A93J     TCGA-MX-A5UG     TCGA-MX-A5UJ     TCGA-MX-A663 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-MX-A666     TCGA-R5-A7O7     TCGA-R5-A7ZE     TCGA-R5-A7ZF 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-R5-A7ZI     TCGA-R5-A7ZR     TCGA-R5-A804     TCGA-R5-A805 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-RD-A7BS     TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-RD-A8N5 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-RD-A8N6     TCGA-RD-A8N9     TCGA-SW-A7EA     TCGA-SW-A7EB 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-A8DL     TCGA-VQ-A8DU     TCGA-VQ-A8DV     TCGA-VQ-A8E2 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3     TCGA-VQ-A8PE 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ     TCGA-VQ-A91Q 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-A94T 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-AA64     TCGA-VQ-AA68     TCGA-VQ-AA69     TCGA-VQ-AA6A 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-AA6B     TCGA-VQ-AA6F     TCGA-VQ-AA6G     TCGA-VQ-AA6I 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 
    TCGA-VQ-AA6J     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"WDR5 WILD-TYPE" "WDR5 WILD-TYPE" "WDR5 WILD-TYPE" 

Clustering(323) Variable = RPL22 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPL22 MUTATED        1      8      0      0
  RPL22 WILD-TYPE    203    129     47      3
D323V1, multiclass
        clus
vv       RPL22 MUTATED RPL22 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             8             129
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPL22 MUTATED        1      3      2      1      1
  RPL22 WILD-TYPE     38     93     42     87     79
D323V2, multiclass
        clus
vv       RPL22 MUTATED RPL22 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPL22 MUTATED        0      2      2      1      3
  RPL22 WILD-TYPE     26     77     71     81     55
D323V3, multiclass
        clus
vv       RPL22 MUTATED RPL22 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPL22 MUTATED        0      4      3      1
  RPL22 WILD-TYPE    127     47     68     68
D323V4, multiclass
        clus
vv       RPL22 MUTATED RPL22 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             4              47
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPL22 MUTATED        1      1      5      1      0
  RPL22 WILD-TYPE     83     84     80     68     47
D323V5, multiclass
        clus
vv       RPL22 MUTATED RPL22 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPL22 MUTATED        1      1      0      6
  RPL22 WILD-TYPE     94     73    121     74
D323V6, multiclass
        clus
vv       RPL22 MUTATED RPL22 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RPL22 MUTATED        4      2      0      2      0      1
  RPL22 WILD-TYPE     48     62     72    102     40     58
D323V7, multiclass
        clus
vv       RPL22 MUTATED RPL22 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             2              62
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RPL22 MUTATED        5      2      2
  RPL22 WILD-TYPE    212     73     97
D323V8, multiclass
        clus
vv       RPL22 MUTATED RPL22 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RPL22 MUTATED        3      2      2
  RPL22 WILD-TYPE    118    106     70
D323V9, multiclass
        clus
vv       RPL22 MUTATED RPL22 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPL22 MUTATED        1      2      1      1      2
  RPL22 WILD-TYPE     87     64     44     54     45
D323V10, multiclass
        clus
vv       RPL22 MUTATED RPL22 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             2              64
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(324) Variable = DDX26B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX26B MUTATED        5      7      0      0
  DDX26B WILD-TYPE    199    130     47      3
D324V1, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              5              199
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX26B MUTATED        1      6      2      2      0
  DDX26B WILD-TYPE     38     90     42     86     80
D324V2, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               90
  CLUS_3              2               42
  CLUS_4              2               86
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX26B MUTATED        0      6      1      0      1
  DDX26B WILD-TYPE     26     73     72     82     57
D324V3, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              0               26
  CLUS_2              6               73
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX26B MUTATED        1      3      3      1
  DDX26B WILD-TYPE    126     48     68     68
D324V4, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              1              126
  CLUS_2              3               48
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX26B MUTATED        3      2      3      2      1
  DDX26B WILD-TYPE     81     83     82     67     46
D324V5, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              3               81
  CLUS_2              2               83
  CLUS_3              3               82
  CLUS_4              2               67
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX26B MUTATED        2      2      3      4
  DDX26B WILD-TYPE     93     72    118     76
D324V6, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              3              118
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX26B MUTATED        3      2      2      1      2      2
  DDX26B WILD-TYPE     49     62     70    103     38     57
D324V7, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              3               49
  CLUS_2              2               62
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              2               38
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DDX26B MUTATED        9      1      2
  DDX26B WILD-TYPE    208     74     97
D324V8, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              9              208
  CLUS_2              1               74
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DDX26B MUTATED        6      1      3
  DDX26B WILD-TYPE    115    107     69
D324V9, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              6              115
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX26B MUTATED        3      1      0      1      5
  DDX26B WILD-TYPE     85     65     45     54     42
D324V10, multiclass
        clus
vv       DDX26B MUTATED DDX26B WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              0               45
  CLUS_4              1               54
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(325) Variable = EPHX1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHX1 MUTATED        1      8      1      0
  EPHX1 WILD-TYPE    203    129     46      3
D325V1, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHX1 MUTATED        1      4      0      0      2
  EPHX1 WILD-TYPE     38     92     44     88     78
D325V2, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHX1 MUTATED        0      5      2      0      1
  EPHX1 WILD-TYPE     26     74     71     82     57
D325V3, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             5              74
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHX1 MUTATED        1      5      2      0
  EPHX1 WILD-TYPE    126     46     69     69
D325V4, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHX1 MUTATED        0      0      4      2      2
  EPHX1 WILD-TYPE     84     85     81     67     45
D325V5, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             4              81
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHX1 MUTATED        5      0      1      2
  EPHX1 WILD-TYPE     90     74    120     78
D325V6, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHX1 MUTATED        1      6      3      0      0      0
  EPHX1 WILD-TYPE     51     58     69    104     40     59
D325V7, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             6              58
  CLUS_3             3              69
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHX1 MUTATED        9      1      0
  EPHX1 WILD-TYPE    208     74     99
D325V8, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHX1 MUTATED        2      0      5
  EPHX1 WILD-TYPE    119    108     67
D325V9, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHX1 MUTATED        0      0      2      0      5
  EPHX1 WILD-TYPE     88     66     43     55     42
D325V10, multiclass
        clus
vv       EPHX1 MUTATED EPHX1 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(326) Variable = CLMN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLMN MUTATED        1     10      3      0
  CLMN WILD-TYPE    203    127     44      3
D326V1, multiclass
        clus
vv       CLMN MUTATED CLMN WILD-TYPE
  CLUS_1            1            203
  CLUS_2           10            127
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLMN MUTATED        2      6      1      0      0
  CLMN WILD-TYPE     37     90     43     88     80
D326V2, multiclass
        clus
vv       CLMN MUTATED CLMN WILD-TYPE
  CLUS_1            2             37
  CLUS_2            6             90
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLMN MUTATED        0      6      2      1      3
  CLMN WILD-TYPE     26     73     71     81     55
D326V3, multiclass
        clus
vv       CLMN MUTATED CLMN WILD-TYPE
  CLUS_1            0             26
  CLUS_2            6             73
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLMN MUTATED        1      6      3      2
  CLMN WILD-TYPE    126     45     68     67
D326V4, multiclass
        clus
vv       CLMN MUTATED CLMN WILD-TYPE
  CLUS_1            1            126
  CLUS_2            6             45
  CLUS_3            3             68
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLMN MUTATED        0      4      6      2      1
  CLMN WILD-TYPE     84     81     79     67     46
D326V5, multiclass
        clus
vv       CLMN MUTATED CLMN WILD-TYPE
  CLUS_1            0             84
  CLUS_2            4             81
  CLUS_3            6             79
  CLUS_4            2             67
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLMN MUTATED        3      3      0      7
  CLMN WILD-TYPE     92     71    121     73
D326V6, multiclass
        clus
vv       CLMN MUTATED CLMN WILD-TYPE
  CLUS_1            3             92
  CLUS_2            3             71
  CLUS_3            0            121
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLMN MUTATED        3      5      2      2      2      0
  CLMN WILD-TYPE     49     59     70    102     38     59
D326V7, multiclass
        clus
vv       CLMN MUTATED CLMN WILD-TYPE
  CLUS_1            3             49
  CLUS_2            5             59
  CLUS_3            2             70
  CLUS_4            2            102
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CLMN MUTATED       12      1      1
  CLMN WILD-TYPE    205     74     98
D326V8, multiclass
        clus
vv       CLMN MUTATED CLMN WILD-TYPE
  CLUS_1           12            205
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CLMN MUTATED        5      2      2
  CLMN WILD-TYPE    116    106     70
D326V9, multiclass
        clus
vv       CLMN MUTATED CLMN WILD-TYPE
  CLUS_1            5            116
  CLUS_2            2            106
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLMN MUTATED        5      0      1      0      3
  CLMN WILD-TYPE     83     66     44     55     44
D326V10, multiclass
        clus
vv       CLMN MUTATED CLMN WILD-TYPE
  CLUS_1            5             83
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(327) Variable = TRAM1L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAM1L1 MUTATED        3     11      1      0
  TRAM1L1 WILD-TYPE    201    126     46      3
D327V1, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               3               201
  CLUS_2              11               126
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRAM1L1 MUTATED        0      9      2      0      1
  TRAM1L1 WILD-TYPE     39     87     42     88     79
D327V2, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               9                87
  CLUS_3               2                42
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRAM1L1 MUTATED        0      3      5      3      1
  TRAM1L1 WILD-TYPE     26     76     68     79     57
D327V3, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               3                76
  CLUS_3               5                68
  CLUS_4               3                79
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAM1L1 MUTATED        2      6      2      2
  TRAM1L1 WILD-TYPE    125     45     69     67
D327V4, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               6                45
  CLUS_3               2                69
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRAM1L1 MUTATED        1      6      5      2      1
  TRAM1L1 WILD-TYPE     83     79     80     67     46
D327V5, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               6                79
  CLUS_3               5                80
  CLUS_4               2                67
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRAM1L1 MUTATED        4      4      1      6
  TRAM1L1 WILD-TYPE     91     70    120     74
D327V6, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               4                70
  CLUS_3               1               120
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRAM1L1 MUTATED        2      5      2      3      1      2
  TRAM1L1 WILD-TYPE     50     59     70    101     39     57
D327V7, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               5                59
  CLUS_3               2                70
  CLUS_4               3               101
  CLUS_5               1                39
  CLUS_6               2                57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TRAM1L1 MUTATED       11      2      2
  TRAM1L1 WILD-TYPE    206     73     97
D327V8, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1              11               206
  CLUS_2               2                73
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TRAM1L1 MUTATED        3      3      6
  TRAM1L1 WILD-TYPE    118    105     66
D327V9, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               3               105
  CLUS_3               6                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRAM1L1 MUTATED        3      1      2      2      4
  TRAM1L1 WILD-TYPE     85     65     43     53     43
D327V10, multiclass
        clus
vv       TRAM1L1 MUTATED TRAM1L1 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               2                53
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(328) Variable = EHMT2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHMT2 MUTATED        7      9      3      0
  EHMT2 WILD-TYPE    197    128     44      3
D328V1, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             7             197
  CLUS_2             9             128
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHMT2 MUTATED        1      8      1      3      3
  EHMT2 WILD-TYPE     38     88     43     85     77
D328V2, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             8              88
  CLUS_3             1              43
  CLUS_4             3              85
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHMT2 MUTATED        3      6      4      0      0
  EHMT2 WILD-TYPE     23     73     69     82     58
D328V3, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             6              73
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHMT2 MUTATED        6      5      2      0
  EHMT2 WILD-TYPE    121     46     69     69
D328V4, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             6             121
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHMT2 MUTATED        5      0      6      6      1
  EHMT2 WILD-TYPE     79     85     79     63     46
D328V5, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             5              79
  CLUS_2             0              85
  CLUS_3             6              79
  CLUS_4             6              63
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHMT2 MUTATED        8      1      4      5
  EHMT2 WILD-TYPE     87     73    117     75
D328V6, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             8              87
  CLUS_2             1              73
  CLUS_3             4             117
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EHMT2 MUTATED        3      4      4      2      3      3
  EHMT2 WILD-TYPE     49     60     68    102     37     56
D328V7, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             4              60
  CLUS_3             4              68
  CLUS_4             2             102
  CLUS_5             3              37
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EHMT2 MUTATED       12      0      7
  EHMT2 WILD-TYPE    205     75     92
D328V8, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             0              75
  CLUS_3             7              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EHMT2 MUTATED        9      3      1
  EHMT2 WILD-TYPE    112    105     71
D328V9, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             9             112
  CLUS_2             3             105
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHMT2 MUTATED        3      0      1      3      6
  EHMT2 WILD-TYPE     85     66     44     52     41
D328V10, multiclass
        clus
vv       EHMT2 MUTATED EHMT2 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             3              52
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(329) Variable = GALNTL1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GALNTL1 MUTATED        2      7      1      0
  GALNTL1 WILD-TYPE    202    130     46      3
D329V1, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               7               130
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALNTL1 MUTATED        1      3      2      2      1
  GALNTL1 WILD-TYPE     38     93     42     86     79
D329V2, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               3                93
  CLUS_3               2                42
  CLUS_4               2                86
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALNTL1 MUTATED        0      2      3      2      3
  GALNTL1 WILD-TYPE     26     77     70     80     55
D329V3, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               3                70
  CLUS_4               2                80
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GALNTL1 MUTATED        2      4      1      3
  GALNTL1 WILD-TYPE    125     47     70     66
D329V4, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               4                47
  CLUS_3               1                70
  CLUS_4               3                66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALNTL1 MUTATED        1      3      3      0      1
  GALNTL1 WILD-TYPE     83     82     82     69     46
D329V5, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               3                82
  CLUS_3               3                82
  CLUS_4               0                69
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GALNTL1 MUTATED        1      4      1      2
  GALNTL1 WILD-TYPE     94     70    120     78
D329V6, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               4                70
  CLUS_3               1               120
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GALNTL1 MUTATED        2      3      0      5      0      0
  GALNTL1 WILD-TYPE     50     61     72     99     40     59
D329V7, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               3                61
  CLUS_3               0                72
  CLUS_4               5                99
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GALNTL1 MUTATED        6      3      1
  GALNTL1 WILD-TYPE    211     72     98
D329V8, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               3                72
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GALNTL1 MUTATED        2      3      3
  GALNTL1 WILD-TYPE    119    105     69
D329V9, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               3               105
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALNTL1 MUTATED        2      3      1      1      1
  GALNTL1 WILD-TYPE     86     63     44     54     46
D329V10, multiclass
        clus
vv       GALNTL1 MUTATED GALNTL1 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               3                63
  CLUS_3               1                44
  CLUS_4               1                54
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(330) Variable = DMXL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMXL2 MUTATED       21     19      1      0
  DMXL2 WILD-TYPE    183    118     46      3
D330V1, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1            21             183
  CLUS_2            19             118
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DMXL2 MUTATED        4     13      6      7      6
  DMXL2 WILD-TYPE     35     83     38     81     74
D330V2, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1             4              35
  CLUS_2            13              83
  CLUS_3             6              38
  CLUS_4             7              81
  CLUS_5             6              74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DMXL2 MUTATED        2      8      7      5      9
  DMXL2 WILD-TYPE     24     71     66     77     49
D330V3, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             8              71
  CLUS_3             7              66
  CLUS_4             5              77
  CLUS_5             9              49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMXL2 MUTATED       12     10      4      5
  DMXL2 WILD-TYPE    115     41     67     64
D330V4, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1            12             115
  CLUS_2            10              41
  CLUS_3             4              67
  CLUS_4             5              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DMXL2 MUTATED        8     12     11      7      2
  DMXL2 WILD-TYPE     76     73     74     62     45
D330V5, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1             8              76
  CLUS_2            12              73
  CLUS_3            11              74
  CLUS_4             7              62
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMXL2 MUTATED       10      9     11     10
  DMXL2 WILD-TYPE     85     65    110     70
D330V6, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1            10              85
  CLUS_2             9              65
  CLUS_3            11             110
  CLUS_4            10              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DMXL2 MUTATED        6      7     11     10      2      5
  DMXL2 WILD-TYPE     46     57     61     94     38     54
D330V7, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             7              57
  CLUS_3            11              61
  CLUS_4            10              94
  CLUS_5             2              38
  CLUS_6             5              54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DMXL2 MUTATED       25      5     11
  DMXL2 WILD-TYPE    192     70     88
D330V8, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1            25             192
  CLUS_2             5              70
  CLUS_3            11              88
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DMXL2 MUTATED       14     12      5
  DMXL2 WILD-TYPE    107     96     67
D330V9, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1            14             107
  CLUS_2            12              96
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DMXL2 MUTATED       10      6      1      8      6
  DMXL2 WILD-TYPE     78     60     44     47     41
D330V10, multiclass
        clus
vv       DMXL2 MUTATED DMXL2 WILD-TYPE
  CLUS_1            10              78
  CLUS_2             6              60
  CLUS_3             1              44
  CLUS_4             8              47
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(331) Variable = MIA2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIA2 MUTATED        2      5      3      0
  MIA2 WILD-TYPE    202    132     44      3
D331V1, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            2            202
  CLUS_2            5            132
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MIA2 MUTATED        3      4      0      1      0
  MIA2 WILD-TYPE     36     92     44     87     80
D331V2, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            3             36
  CLUS_2            4             92
  CLUS_3            0             44
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MIA2 MUTATED        0      0      5      1      4
  MIA2 WILD-TYPE     26     79     68     81     54
D331V3, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             79
  CLUS_3            5             68
  CLUS_4            1             81
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIA2 MUTATED        1      8      1      0
  MIA2 WILD-TYPE    126     43     70     69
D331V4, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            8             43
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MIA2 MUTATED        2      0      5      1      2
  MIA2 WILD-TYPE     82     85     80     68     45
D331V5, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            0             85
  CLUS_3            5             80
  CLUS_4            1             68
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MIA2 MUTATED        2      0      2      6
  MIA2 WILD-TYPE     93     74    119     74
D331V6, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            0             74
  CLUS_3            2            119
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MIA2 MUTATED        3      3      1      0      1      2
  MIA2 WILD-TYPE     49     61     71    104     39     57
D331V7, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            3             61
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            1             39
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MIA2 MUTATED        7      0      3
  MIA2 WILD-TYPE    210     75     96
D331V8, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            0             75
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MIA2 MUTATED        5      0      2
  MIA2 WILD-TYPE    116    108     70
D331V9, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MIA2 MUTATED        1      0      1      2      3
  MIA2 WILD-TYPE     87     66     44     53     44
D331V10, multiclass
        clus
vv       MIA2 MUTATED MIA2 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            2             53
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(332) Variable = NT5DC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5DC1 MUTATED        0      7      1      0
  NT5DC1 WILD-TYPE    204    130     46      3
D332V1, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              7              130
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NT5DC1 MUTATED        0      7      1      0      0
  NT5DC1 WILD-TYPE     39     89     43     88     80
D332V2, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              7               89
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NT5DC1 MUTATED        0      1      3      0      2
  NT5DC1 WILD-TYPE     26     78     70     82     56
D332V3, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5DC1 MUTATED        0      4      0      2
  NT5DC1 WILD-TYPE    127     47     71     67
D332V4, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              4               47
  CLUS_3              0               71
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NT5DC1 MUTATED        0      3      5      0      0
  NT5DC1 WILD-TYPE     84     82     80     69     47
D332V5, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3              5               80
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NT5DC1 MUTATED        3      2      0      3
  NT5DC1 WILD-TYPE     92     72    121     77
D332V6, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NT5DC1 MUTATED        3      2      1      0      2      0
  NT5DC1 WILD-TYPE     49     62     71    104     38     59
D332V7, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NT5DC1 MUTATED        6      0      2
  NT5DC1 WILD-TYPE    211     75     97
D332V8, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              0               75
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NT5DC1 MUTATED        4      1      3
  NT5DC1 WILD-TYPE    117    107     69
D332V9, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NT5DC1 MUTATED        3      0      1      0      4
  NT5DC1 WILD-TYPE     85     66     44     55     43
D332V10, multiclass
        clus
vv       NT5DC1 MUTATED NT5DC1 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(333) Variable = SYCP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYCP1 MUTATED        8     14      1      0
  SYCP1 WILD-TYPE    196    123     46      3
D333V1, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             8             196
  CLUS_2            14             123
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP1 MUTATED        2     10      3      2      3
  SYCP1 WILD-TYPE     37     86     41     86     77
D333V2, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            10              86
  CLUS_3             3              41
  CLUS_4             2              86
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP1 MUTATED        1      9      5      1      2
  SYCP1 WILD-TYPE     25     70     68     81     56
D333V3, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             9              70
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYCP1 MUTATED        4      7      6      1
  SYCP1 WILD-TYPE    123     44     65     68
D333V4, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             7              44
  CLUS_3             6              65
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP1 MUTATED        5      3     14      0      0
  SYCP1 WILD-TYPE     79     82     71     69     47
D333V5, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             5              79
  CLUS_2             3              82
  CLUS_3            14              71
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYCP1 MUTATED        3      3      7      9
  SYCP1 WILD-TYPE     92     71    114     71
D333V6, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             3              71
  CLUS_3             7             114
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYCP1 MUTATED        6      6      5      3      0      3
  SYCP1 WILD-TYPE     46     58     67    101     40     56
D333V7, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             6              58
  CLUS_3             5              67
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYCP1 MUTATED       14      4      5
  SYCP1 WILD-TYPE    203     71     94
D333V8, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             4              71
  CLUS_3             5              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYCP1 MUTATED        5      6      7
  SYCP1 WILD-TYPE    116    102     65
D333V9, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             6             102
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP1 MUTATED        6      3      5      1      3
  SYCP1 WILD-TYPE     82     63     40     54     44
D333V10, multiclass
        clus
vv       SYCP1 MUTATED SYCP1 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             3              63
  CLUS_3             5              40
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(334) Variable = ZNF878 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF878 MUTATED        2     11      0      0
  ZNF878 WILD-TYPE    202    126     47      3
D334V1, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              2              202
  CLUS_2             11              126
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF878 MUTATED        1      8      2      0      1
  ZNF878 WILD-TYPE     38     88     42     88     79
D334V2, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              8               88
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF878 MUTATED        0      4      5      0      1
  ZNF878 WILD-TYPE     26     75     68     82     57
D334V3, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              5               68
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF878 MUTATED        1      7      2      0
  ZNF878 WILD-TYPE    126     44     69     69
D334V4, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              7               44
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF878 MUTATED        0      0     10      1      0
  ZNF878 WILD-TYPE     84     85     75     68     47
D334V5, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3             10               75
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF878 MUTATED        2      0      1      8
  ZNF878 WILD-TYPE     93     74    120     72
D334V6, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              8               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF878 MUTATED        7      3      1      2      0      0
  ZNF878 WILD-TYPE     45     61     71    102     40     59
D334V7, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              7               45
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF878 MUTATED       10      2      1
  ZNF878 WILD-TYPE    207     73     98
D334V8, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1             10              207
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF878 MUTATED        6      0      4
  ZNF878 WILD-TYPE    115    108     68
D334V9, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              0              108
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF878 MUTATED        4      1      1      0      4
  ZNF878 WILD-TYPE     84     65     44     55     43
D334V10, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(335) Variable = KIAA1009 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1009 MUTATED        3     10      3      0
  KIAA1009 WILD-TYPE    201    127     44      3
D335V1, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                3                201
  CLUS_2               10                127
  CLUS_3                3                 44
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1009 MUTATED        1     10      1      2      1
  KIAA1009 WILD-TYPE     38     86     43     86     79
D335V2, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2               10                 86
  CLUS_3                1                 43
  CLUS_4                2                 86
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1009 MUTATED        1      6      4      0      2
  KIAA1009 WILD-TYPE     25     73     69     82     56
D335V3, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                6                 73
  CLUS_3                4                 69
  CLUS_4                0                 82
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1009 MUTATED        1      6      5      1
  KIAA1009 WILD-TYPE    126     45     66     68
D335V4, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                1                126
  CLUS_2                6                 45
  CLUS_3                5                 66
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1009 MUTATED        1      2     10      1      2
  KIAA1009 WILD-TYPE     83     83     75     68     45
D335V5, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 83
  CLUS_3               10                 75
  CLUS_4                1                 68
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1009 MUTATED        4      1      2      9
  KIAA1009 WILD-TYPE     91     73    119     71
D335V6, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                4                 91
  CLUS_2                1                 73
  CLUS_3                2                119
  CLUS_4                9                 71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1009 MUTATED        4      4      4      1      2      1
  KIAA1009 WILD-TYPE     48     60     68    103     38     58
D335V7, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                4                 60
  CLUS_3                4                 68
  CLUS_4                1                103
  CLUS_5                2                 38
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1009 MUTATED       12      1      3
  KIAA1009 WILD-TYPE    205     74     96
D335V8, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1               12                205
  CLUS_2                1                 74
  CLUS_3                3                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1009 MUTATED        4      3      6
  KIAA1009 WILD-TYPE    117    105     66
D335V9, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                3                105
  CLUS_3                6                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1009 MUTATED        4      0      3      1      5
  KIAA1009 WILD-TYPE     84     66     42     54     42
D335V10, multiclass
        clus
vv       KIAA1009 MUTATED KIAA1009 WILD-TYPE
  CLUS_1                4                 84
  CLUS_2                0                 66
  CLUS_3                3                 42
  CLUS_4                1                 54
  CLUS_5                5                 42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(336) Variable = SENP3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SENP3 MUTATED        1     11      1      0
  SENP3 WILD-TYPE    203    126     46      3
D336V1, multiclass
        clus
vv       SENP3 MUTATED SENP3 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SENP3 MUTATED        1      6      1      0      3
  SENP3 WILD-TYPE     38     90     43     88     77
D336V2, multiclass
        clus
vv       SENP3 MUTATED SENP3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SENP3 MUTATED        3      3      1      2      1
  SENP3 WILD-TYPE     23     76     72     80     57
D336V3, multiclass
        clus
vv       SENP3 MUTATED SENP3 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             3              76
  CLUS_3             1              72
  CLUS_4             2              80
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SENP3 MUTATED        3      2      4      1
  SENP3 WILD-TYPE    124     49     67     68
D336V4, multiclass
        clus
vv       SENP3 MUTATED SENP3 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             2              49
  CLUS_3             4              67
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SENP3 MUTATED        2      2      6      2      0
  SENP3 WILD-TYPE     82     83     79     67     47
D336V5, multiclass
        clus
vv       SENP3 MUTATED SENP3 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             2              83
  CLUS_3             6              79
  CLUS_4             2              67
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SENP3 MUTATED        3      2      2      5
  SENP3 WILD-TYPE     92     72    119     75
D336V6, multiclass
        clus
vv       SENP3 MUTATED SENP3 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SENP3 MUTATED        4      3      2      3      0      1
  SENP3 WILD-TYPE     48     61     70    101     40     58
D336V7, multiclass
        clus
vv       SENP3 MUTATED SENP3 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             3              61
  CLUS_3             2              70
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SENP3 MUTATED       11      0      2
  SENP3 WILD-TYPE    206     75     97
D336V8, multiclass
        clus
vv       SENP3 MUTATED SENP3 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SENP3 MUTATED        4      3      3
  SENP3 WILD-TYPE    117    105     69
D336V9, multiclass
        clus
vv       SENP3 MUTATED SENP3 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             3             105
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SENP3 MUTATED        3      1      2      0      4
  SENP3 WILD-TYPE     85     65     43     55     43
D336V10, multiclass
        clus
vv       SENP3 MUTATED SENP3 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(337) Variable = ERBB4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB4 MUTATED       18     22      8      0
  ERBB4 WILD-TYPE    186    115     39      3
D337V1, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            18             186
  CLUS_2            22             115
  CLUS_3             8              39
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB4 MUTATED        7     20      4      8      3
  ERBB4 WILD-TYPE     32     76     40     80     77
D337V2, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             7              32
  CLUS_2            20              76
  CLUS_3             4              40
  CLUS_4             8              80
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB4 MUTATED        3     12     13     10      7
  ERBB4 WILD-TYPE     23     67     60     72     51
D337V3, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             3              23
  CLUS_2            12              67
  CLUS_3            13              60
  CLUS_4            10              72
  CLUS_5             7              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB4 MUTATED       14     15      4     12
  ERBB4 WILD-TYPE    113     36     67     57
D337V4, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            14             113
  CLUS_2            15              36
  CLUS_3             4              67
  CLUS_4            12              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB4 MUTATED        8     10     14      5     11
  ERBB4 WILD-TYPE     76     75     71     64     36
D337V5, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1             8              76
  CLUS_2            10              75
  CLUS_3            14              71
  CLUS_4             5              64
  CLUS_5            11              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERBB4 MUTATED       14      8     11     15
  ERBB4 WILD-TYPE     81     66    110     65
D337V6, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            14              81
  CLUS_2             8              66
  CLUS_3            11             110
  CLUS_4            15              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERBB4 MUTATED       11     11      6      9      5      7
  ERBB4 WILD-TYPE     41     53     66     95     35     52
D337V7, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            11              41
  CLUS_2            11              53
  CLUS_3             6              66
  CLUS_4             9              95
  CLUS_5             5              35
  CLUS_6             7              52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB4 MUTATED       32      5     12
  ERBB4 WILD-TYPE    185     70     87
D337V8, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            32             185
  CLUS_2             5              70
  CLUS_3            12              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ERBB4 MUTATED       20     12      9
  ERBB4 WILD-TYPE    101     96     63
D337V9, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            20             101
  CLUS_2            12              96
  CLUS_3             9              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERBB4 MUTATED       14      3      5      7     12
  ERBB4 WILD-TYPE     74     63     40     48     35
D337V10, multiclass
        clus
vv       ERBB4 MUTATED ERBB4 WILD-TYPE
  CLUS_1            14              74
  CLUS_2             3              63
  CLUS_3             5              40
  CLUS_4             7              48
  CLUS_5            12              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(338) Variable = COL12A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL12A1 MUTATED       16     30      6      0
  COL12A1 WILD-TYPE    188    107     41      3
D338V1, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1              16               188
  CLUS_2              30               107
  CLUS_3               6                41
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL12A1 MUTATED        3     24      5      7      5
  COL12A1 WILD-TYPE     36     72     39     81     75
D338V2, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1               3                36
  CLUS_2              24                72
  CLUS_3               5                39
  CLUS_4               7                81
  CLUS_5               5                75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL12A1 MUTATED        4     15      5      6     13
  COL12A1 WILD-TYPE     22     64     68     76     45
D338V3, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1               4                22
  CLUS_2              15                64
  CLUS_3               5                68
  CLUS_4               6                76
  CLUS_5              13                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL12A1 MUTATED       13     13     11      6
  COL12A1 WILD-TYPE    114     38     60     63
D338V4, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1              13               114
  CLUS_2              13                38
  CLUS_3              11                60
  CLUS_4               6                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL12A1 MUTATED        6      8     18      9      8
  COL12A1 WILD-TYPE     78     77     67     60     39
D338V5, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1               6                78
  CLUS_2               8                77
  CLUS_3              18                67
  CLUS_4               9                60
  CLUS_5               8                39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL12A1 MUTATED       13      5     15     16
  COL12A1 WILD-TYPE     82     69    106     64
D338V6, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1              13                82
  CLUS_2               5                69
  CLUS_3              15               106
  CLUS_4              16                64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COL12A1 MUTATED       11     17      8      7      6      4
  COL12A1 WILD-TYPE     41     47     64     97     34     55
D338V7, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1              11                41
  CLUS_2              17                47
  CLUS_3               8                64
  CLUS_4               7                97
  CLUS_5               6                34
  CLUS_6               4                55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL12A1 MUTATED       36      5     12
  COL12A1 WILD-TYPE    181     70     87
D338V8, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1              36               181
  CLUS_2               5                70
  CLUS_3              12                87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL12A1 MUTATED       13     12     18
  COL12A1 WILD-TYPE    108     96     54
D338V9, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1              13               108
  CLUS_2              12                96
  CLUS_3              18                54
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL12A1 MUTATED       10      4      9      6     14
  COL12A1 WILD-TYPE     78     62     36     49     33
D338V10, multiclass
        clus
vv       COL12A1 MUTATED COL12A1 WILD-TYPE
  CLUS_1              10                78
  CLUS_2               4                62
  CLUS_3               9                36
  CLUS_4               6                49
  CLUS_5              14                33
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(339) Variable = PANK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK1 MUTATED        2      7      1      0
  PANK1 WILD-TYPE    202    130     46      3
D339V1, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             7             130
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PANK1 MUTATED        1      3      3      0      1
  PANK1 WILD-TYPE     38     93     41     88     79
D339V2, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PANK1 MUTATED        0      3      1      1      3
  PANK1 WILD-TYPE     26     76     72     81     55
D339V3, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK1 MUTATED        1      3      2      2
  PANK1 WILD-TYPE    126     48     69     67
D339V4, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             3              48
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PANK1 MUTATED        0      3      4      1      2
  PANK1 WILD-TYPE     84     82     81     68     45
D339V5, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PANK1 MUTATED        3      1      2      4
  PANK1 WILD-TYPE     92     73    119     76
D339V6, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PANK1 MUTATED        1      4      2      2      1      0
  PANK1 WILD-TYPE     51     60     70    102     39     59
D339V7, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             4              60
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK1 MUTATED        7      2      1
  PANK1 WILD-TYPE    210     73     98
D339V8, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PANK1 MUTATED        3      2      3
  PANK1 WILD-TYPE    118    106     69
D339V9, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PANK1 MUTATED        4      1      1      0      2
  PANK1 WILD-TYPE     84     65     44     55     45
D339V10, multiclass
        clus
vv       PANK1 MUTATED PANK1 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(340) Variable = SNRNP35 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNRNP35 MUTATED        0      4      2      0
  SNRNP35 WILD-TYPE    204    133     45      3
D340V1, multiclass
        clus
vv       SNRNP35 MUTATED SNRNP35 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               4               133
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNRNP35 MUTATED        0      4      0      0      0
  SNRNP35 WILD-TYPE     39     92     44     88     80
D340V2, multiclass
        clus
vv       SNRNP35 MUTATED SNRNP35 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               4                92
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNRNP35 MUTATED        1      1      0      0      2
  SNRNP35 WILD-TYPE     25     78     73     82     56
D340V3, multiclass
        clus
vv       SNRNP35 MUTATED SNRNP35 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                78
  CLUS_3               0                73
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNRNP35 MUTATED        2      2      0      0
  SNRNP35 WILD-TYPE    125     49     71     69
D340V4, multiclass
        clus
vv       SNRNP35 MUTATED SNRNP35 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               2                49
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNRNP35 MUTATED        1      0      2      1      2
  SNRNP35 WILD-TYPE     83     85     83     68     45
D340V5, multiclass
        clus
vv       SNRNP35 MUTATED SNRNP35 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                85
  CLUS_3               2                83
  CLUS_4               1                68
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNRNP35 MUTATED        3      0      0      3
  SNRNP35 WILD-TYPE     92     74    121     77
D340V6, multiclass
        clus
vv       SNRNP35 MUTATED SNRNP35 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               0                74
  CLUS_3               0               121
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SNRNP35 MUTATED        3      1      1      0      0      1
  SNRNP35 WILD-TYPE     49     63     71    104     40     58
D340V7, multiclass
        clus
vv       SNRNP35 MUTATED SNRNP35 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               1                63
  CLUS_3               1                71
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SNRNP35 MUTATED        5      0      1
  SNRNP35 WILD-TYPE    212     75     98
D340V8, multiclass
        clus
vv       SNRNP35 MUTATED SNRNP35 WILD-TYPE
  CLUS_1               5               212
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SNRNP35 MUTATED        2      0      1
  SNRNP35 WILD-TYPE    119    108     71
D340V9, multiclass
        clus
vv       SNRNP35 MUTATED SNRNP35 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               0               108
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNRNP35 MUTATED        0      0      0      0      3
  SNRNP35 WILD-TYPE     88     66     45     55     44
D340V10, multiclass
        clus
vv       SNRNP35 MUTATED SNRNP35 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(341) Variable = PTPN4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN4 MUTATED        2      9      0      0
  PTPN4 WILD-TYPE    202    128     47      3
D341V1, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             9             128
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN4 MUTATED        1      3      2      0      1
  PTPN4 WILD-TYPE     38     93     42     88     79
D341V2, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN4 MUTATED        1      3      0      2      3
  PTPN4 WILD-TYPE     25     76     73     80     55
D341V3, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             0              73
  CLUS_4             2              80
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN4 MUTATED        2      4      1      2
  PTPN4 WILD-TYPE    125     47     70     67
D341V4, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN4 MUTATED        2      3      5      0      1
  PTPN4 WILD-TYPE     82     82     80     69     46
D341V5, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             3              82
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN4 MUTATED        3      2      0      6
  PTPN4 WILD-TYPE     92     72    121     74
D341V6, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPN4 MUTATED        3      5      0      1      2      1
  PTPN4 WILD-TYPE     49     59     72    103     38     58
D341V7, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             5              59
  CLUS_3             0              72
  CLUS_4             1             103
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPN4 MUTATED       10      1      1
  PTPN4 WILD-TYPE    207     74     98
D341V8, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPN4 MUTATED        4      1      2
  PTPN4 WILD-TYPE    117    107     70
D341V9, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN4 MUTATED        5      0      0      0      2
  PTPN4 WILD-TYPE     83     66     45     55     45
D341V10, multiclass
        clus
vv       PTPN4 MUTATED PTPN4 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(342) Variable = TNFRSF9 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF9 MUTATED        2      7      1      0
  TNFRSF9 WILD-TYPE    202    130     46      3
D342V1, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               7               130
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFRSF9 MUTATED        1      5      1      1      1
  TNFRSF9 WILD-TYPE     38     91     43     87     79
D342V2, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               5                91
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFRSF9 MUTATED        1      4      0      2      1
  TNFRSF9 WILD-TYPE     25     75     73     80     57
D342V3, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               4                75
  CLUS_3               0                73
  CLUS_4               2                80
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF9 MUTATED        1      2      3      2
  TNFRSF9 WILD-TYPE    126     49     68     67
D342V4, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               2                49
  CLUS_3               3                68
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFRSF9 MUTATED        0      0      7      0      2
  TNFRSF9 WILD-TYPE     84     85     78     69     45
D342V5, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               7                78
  CLUS_4               0                69
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF9 MUTATED        1      1      1      6
  TNFRSF9 WILD-TYPE     94     73    120     74
D342V6, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNFRSF9 MUTATED        1      4      2      2      1      0
  TNFRSF9 WILD-TYPE     51     60     70    102     39     59
D342V7, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               4                60
  CLUS_3               2                70
  CLUS_4               2               102
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        8      2      0
  TNFRSF9 WILD-TYPE    209     73     99
D342V8, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               8               209
  CLUS_2               2                73
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFRSF9 MUTATED        2      2      4
  TNFRSF9 WILD-TYPE    119    106     68
D342V9, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               2               106
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFRSF9 MUTATED        5      0      3      0      0
  TNFRSF9 WILD-TYPE     83     66     42     55     47
D342V10, multiclass
        clus
vv       TNFRSF9 MUTATED TNFRSF9 WILD-TYPE
  CLUS_1               5                83
  CLUS_2               0                66
  CLUS_3               3                42
  CLUS_4               0                55
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(343) Variable = SIGLEC10 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC10 MUTATED        3      8      2      0
  SIGLEC10 WILD-TYPE    201    129     45      3
D343V1, multiclass
        clus
vv       SIGLEC10 MUTATED SIGLEC10 WILD-TYPE
  CLUS_1                3                201
  CLUS_2                8                129
  CLUS_3                2                 45
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC10 MUTATED        3      5      1      1      2
  SIGLEC10 WILD-TYPE     36     91     43     87     78
D343V2, multiclass
        clus
vv       SIGLEC10 MUTATED SIGLEC10 WILD-TYPE
  CLUS_1                3                 36
  CLUS_2                5                 91
  CLUS_3                1                 43
  CLUS_4                1                 87
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC10 MUTATED        1      0      2      4      3
  SIGLEC10 WILD-TYPE     25     79     71     78     55
D343V3, multiclass
        clus
vv       SIGLEC10 MUTATED SIGLEC10 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                0                 79
  CLUS_3                2                 71
  CLUS_4                4                 78
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC10 MUTATED        2      3      1      4
  SIGLEC10 WILD-TYPE    125     48     70     65
D343V4, multiclass
        clus
vv       SIGLEC10 MUTATED SIGLEC10 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                3                 48
  CLUS_3                1                 70
  CLUS_4                4                 65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC10 MUTATED        2      2      6      3      0
  SIGLEC10 WILD-TYPE     82     83     79     66     47
D343V5, multiclass
        clus
vv       SIGLEC10 MUTATED SIGLEC10 WILD-TYPE
  CLUS_1                2                 82
  CLUS_2                2                 83
  CLUS_3                6                 79
  CLUS_4                3                 66
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIGLEC10 MUTATED        3      2      4      4
  SIGLEC10 WILD-TYPE     92     72    117     76
D343V6, multiclass
        clus
vv       SIGLEC10 MUTATED SIGLEC10 WILD-TYPE
  CLUS_1                3                 92
  CLUS_2                2                 72
  CLUS_3                4                117
  CLUS_4                4                 76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SIGLEC10 MUTATED        2      2      4      4      0      1
  SIGLEC10 WILD-TYPE     50     62     68    100     40     58
D343V7, multiclass
        clus
vv       SIGLEC10 MUTATED SIGLEC10 WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                2                 62
  CLUS_3                4                 68
  CLUS_4                4                100
  CLUS_5                0                 40
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC10 MUTATED        9      3      1
  SIGLEC10 WILD-TYPE    208     72     98
D343V8, multiclass
        clus
vv       SIGLEC10 MUTATED SIGLEC10 WILD-TYPE
  CLUS_1                9                208
  CLUS_2                3                 72
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SIGLEC10 MUTATED        4      3      3
  SIGLEC10 WILD-TYPE    117    105     69
D343V9, multiclass
        clus
vv       SIGLEC10 MUTATED SIGLEC10 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                3                105
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIGLEC10 MUTATED        4      1      1      1      3
  SIGLEC10 WILD-TYPE     84     65     44     54     44
D343V10, multiclass
        clus
vv       SIGLEC10 MUTATED SIGLEC10 WILD-TYPE
  CLUS_1                4                 84
  CLUS_2                1                 65
  CLUS_3                1                 44
  CLUS_4                1                 54
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(344) Variable = HTR7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR7 MUTATED        3     10      1      0
  HTR7 WILD-TYPE    201    127     46      3
D344V1, multiclass
        clus
vv       HTR7 MUTATED HTR7 WILD-TYPE
  CLUS_1            3            201
  CLUS_2           10            127
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTR7 MUTATED        0      7      2      2      0
  HTR7 WILD-TYPE     39     89     42     86     80
D344V2, multiclass
        clus
vv       HTR7 MUTATED HTR7 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            7             89
  CLUS_3            2             42
  CLUS_4            2             86
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTR7 MUTATED        0      5      3      0      3
  HTR7 WILD-TYPE     26     74     70     82     55
D344V3, multiclass
        clus
vv       HTR7 MUTATED HTR7 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            5             74
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR7 MUTATED        3      6      2      0
  HTR7 WILD-TYPE    124     45     69     69
D344V4, multiclass
        clus
vv       HTR7 MUTATED HTR7 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            6             45
  CLUS_3            2             69
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTR7 MUTATED        0      2      7      2      2
  HTR7 WILD-TYPE     84     83     78     67     45
D344V5, multiclass
        clus
vv       HTR7 MUTATED HTR7 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            7             78
  CLUS_4            2             67
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR7 MUTATED        3      1      2      7
  HTR7 WILD-TYPE     92     73    119     73
D344V6, multiclass
        clus
vv       HTR7 MUTATED HTR7 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HTR7 MUTATED        1      3      5      2      2      1
  HTR7 WILD-TYPE     51     61     67    102     38     58
D344V7, multiclass
        clus
vv       HTR7 MUTATED HTR7 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            3             61
  CLUS_3            5             67
  CLUS_4            2            102
  CLUS_5            2             38
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HTR7 MUTATED       11      1      2
  HTR7 WILD-TYPE    206     74     97
D344V8, multiclass
        clus
vv       HTR7 MUTATED HTR7 WILD-TYPE
  CLUS_1           11            206
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HTR7 MUTATED        4      2      3
  HTR7 WILD-TYPE    117    106     69
D344V9, multiclass
        clus
vv       HTR7 MUTATED HTR7 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            2            106
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTR7 MUTATED        3      1      1      1      3
  HTR7 WILD-TYPE     85     65     44     54     44
D344V10, multiclass
        clus
vv       HTR7 MUTATED HTR7 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(345) Variable = OBSCN MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OBSCN MUTATED       31     47     11      0
  OBSCN WILD-TYPE    173     90     36      3
D345V1, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1            31             173
  CLUS_2            47              90
  CLUS_3            11              36
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OBSCN MUTATED        8     35     11     13     14
  OBSCN WILD-TYPE     31     61     33     75     66
D345V2, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1             8              31
  CLUS_2            35              61
  CLUS_3            11              33
  CLUS_4            13              75
  CLUS_5            14              66
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OBSCN MUTATED        3     22     12     13     18
  OBSCN WILD-TYPE     23     57     61     69     40
D345V3, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1             3              23
  CLUS_2            22              57
  CLUS_3            12              61
  CLUS_4            13              69
  CLUS_5            18              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OBSCN MUTATED       20     21     17     10
  OBSCN WILD-TYPE    107     30     54     59
D345V4, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1            20             107
  CLUS_2            21              30
  CLUS_3            17              54
  CLUS_4            10              59
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OBSCN MUTATED       15     19     27     15      8
  OBSCN WILD-TYPE     69     66     58     54     39
D345V5, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1            15              69
  CLUS_2            19              66
  CLUS_3            27              58
  CLUS_4            15              54
  CLUS_5             8              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OBSCN MUTATED       20     15     22     27
  OBSCN WILD-TYPE     75     59     99     53
D345V6, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1            20              75
  CLUS_2            15              59
  CLUS_3            22              99
  CLUS_4            27              53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OBSCN MUTATED       15     17     21     17     10     10
  OBSCN WILD-TYPE     37     47     51     87     30     49
D345V7, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1            15              37
  CLUS_2            17              47
  CLUS_3            21              51
  CLUS_4            17              87
  CLUS_5            10              30
  CLUS_6            10              49
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OBSCN MUTATED       58     10     22
  OBSCN WILD-TYPE    159     65     77
D345V8, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1            58             159
  CLUS_2            10              65
  CLUS_3            22              77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OBSCN MUTATED       32     20     16
  OBSCN WILD-TYPE     89     88     56
D345V9, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1            32              89
  CLUS_2            20              88
  CLUS_3            16              56
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OBSCN MUTATED       22      8      7     11     20
  OBSCN WILD-TYPE     66     58     38     44     27
D345V10, multiclass
        clus
vv       OBSCN MUTATED OBSCN WILD-TYPE
  CLUS_1            22              66
  CLUS_2             8              58
  CLUS_3             7              38
  CLUS_4            11              44
  CLUS_5            20              27
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(346) Variable = GAB2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB2 MUTATED        5      6      0      0
  GAB2 WILD-TYPE    199    131     47      3
D346V1, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            5            199
  CLUS_2            6            131
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAB2 MUTATED        0      5      2      3      0
  GAB2 WILD-TYPE     39     91     42     85     80
D346V2, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            5             91
  CLUS_3            2             42
  CLUS_4            3             85
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAB2 MUTATED        1      4      1      2      0
  GAB2 WILD-TYPE     25     75     72     80     58
D346V3, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             75
  CLUS_3            1             72
  CLUS_4            2             80
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB2 MUTATED        1      3      3      1
  GAB2 WILD-TYPE    126     48     68     68
D346V4, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            3             48
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAB2 MUTATED        4      1      4      1      1
  GAB2 WILD-TYPE     80     84     81     68     46
D346V5, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            4             80
  CLUS_2            1             84
  CLUS_3            4             81
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAB2 MUTATED        2      2      2      5
  GAB2 WILD-TYPE     93     72    119     75
D346V6, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            2             72
  CLUS_3            2            119
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GAB2 MUTATED        4      1      3      1      0      2
  GAB2 WILD-TYPE     48     63     69    103     40     57
D346V7, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            1             63
  CLUS_3            3             69
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB2 MUTATED        8      1      2
  GAB2 WILD-TYPE    209     74     97
D346V8, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            8            209
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GAB2 MUTATED        5      3      1
  GAB2 WILD-TYPE    116    105     71
D346V9, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            3            105
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAB2 MUTATED        3      0      1      2      3
  GAB2 WILD-TYPE     85     66     44     53     44
D346V10, multiclass
        clus
vv       GAB2 MUTATED GAB2 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            2             53
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(347) Variable = SLC12A7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        3     17      3      0
  SLC12A7 WILD-TYPE    201    120     44      3
D347V1, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               3               201
  CLUS_2              17               120
  CLUS_3               3                44
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A7 MUTATED        1     14      1      2      3
  SLC12A7 WILD-TYPE     38     82     43     86     77
D347V2, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               1                38
  CLUS_2              14                82
  CLUS_3               1                43
  CLUS_4               2                86
  CLUS_5               3                77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A7 MUTATED        2      7      3      0      4
  SLC12A7 WILD-TYPE     24     72     70     82     54
D347V3, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               7                72
  CLUS_3               3                70
  CLUS_4               0                82
  CLUS_5               4                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        3      8      3      2
  SLC12A7 WILD-TYPE    124     43     68     67
D347V4, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               8                43
  CLUS_3               3                68
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A7 MUTATED        3      4     11      4      1
  SLC12A7 WILD-TYPE     81     81     74     65     46
D347V5, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               3                81
  CLUS_2               4                81
  CLUS_3              11                74
  CLUS_4               4                65
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC12A7 MUTATED        8      3      3      9
  SLC12A7 WILD-TYPE     87     71    118     71
D347V6, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               8                87
  CLUS_2               3                71
  CLUS_3               3               118
  CLUS_4               9                71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC12A7 MUTATED        7      6      3      4      2      2
  SLC12A7 WILD-TYPE     45     58     69    100     38     57
D347V7, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               7                45
  CLUS_2               6                58
  CLUS_3               3                69
  CLUS_4               4               100
  CLUS_5               2                38
  CLUS_6               2                57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED       16      2      6
  SLC12A7 WILD-TYPE    201     73     93
D347V8, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1              16               201
  CLUS_2               2                73
  CLUS_3               6                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC12A7 MUTATED        8      4      6
  SLC12A7 WILD-TYPE    113    104     66
D347V9, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               8               113
  CLUS_2               4               104
  CLUS_3               6                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC12A7 MUTATED        4      1      3      1      9
  SLC12A7 WILD-TYPE     84     65     42     54     38
D347V10, multiclass
        clus
vv       SLC12A7 MUTATED SLC12A7 WILD-TYPE
  CLUS_1               4                84
  CLUS_2               1                65
  CLUS_3               3                42
  CLUS_4               1                54
  CLUS_5               9                38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(348) Variable = KIAA1522 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1522 MUTATED        0      9      3      0
  KIAA1522 WILD-TYPE    204    128     44      3
D348V1, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                0                204
  CLUS_2                9                128
  CLUS_3                3                 44
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1522 MUTATED        1      6      3      0      1
  KIAA1522 WILD-TYPE     38     90     41     88     79
D348V2, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                6                 90
  CLUS_3                3                 41
  CLUS_4                0                 88
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1522 MUTATED        2      3      0      0      4
  KIAA1522 WILD-TYPE     24     76     73     82     54
D348V3, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                3                 76
  CLUS_3                0                 73
  CLUS_4                0                 82
  CLUS_5                4                 54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1522 MUTATED        2      5      2      0
  KIAA1522 WILD-TYPE    125     46     69     69
D348V4, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                5                 46
  CLUS_3                2                 69
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1522 MUTATED        1      2      6      0      2
  KIAA1522 WILD-TYPE     83     83     79     69     45
D348V5, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 83
  CLUS_3                6                 79
  CLUS_4                0                 69
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1522 MUTATED        2      1      2      6
  KIAA1522 WILD-TYPE     93     73    119     74
D348V6, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                1                 73
  CLUS_3                2                119
  CLUS_4                6                 74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1522 MUTATED        1      3      4      2      1      1
  KIAA1522 WILD-TYPE     51     61     68    102     39     58
D348V7, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                3                 61
  CLUS_3                4                 68
  CLUS_4                2                102
  CLUS_5                1                 39
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1522 MUTATED        9      1      2
  KIAA1522 WILD-TYPE    208     74     97
D348V8, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                9                208
  CLUS_2                1                 74
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1522 MUTATED        3      2      6
  KIAA1522 WILD-TYPE    118    106     66
D348V9, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                3                118
  CLUS_2                2                106
  CLUS_3                6                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1522 MUTATED        3      1      3      0      4
  KIAA1522 WILD-TYPE     85     65     42     55     43
D348V10, multiclass
        clus
vv       KIAA1522 MUTATED KIAA1522 WILD-TYPE
  CLUS_1                3                 85
  CLUS_2                1                 65
  CLUS_3                3                 42
  CLUS_4                0                 55
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(349) Variable = FERMT2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FERMT2 MUTATED        4      8      0      0
  FERMT2 WILD-TYPE    200    129     47      3
D349V1, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              4              200
  CLUS_2              8              129
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FERMT2 MUTATED        1      8      0      1      0
  FERMT2 WILD-TYPE     38     88     44     87     80
D349V2, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              8               88
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FERMT2 MUTATED        0      3      2      0      4
  FERMT2 WILD-TYPE     26     76     71     82     54
D349V3, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FERMT2 MUTATED        0      8      1      0
  FERMT2 WILD-TYPE    127     43     70     69
D349V4, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              8               43
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FERMT2 MUTATED        1      1      7      1      2
  FERMT2 WILD-TYPE     83     84     78     68     45
D349V5, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              7               78
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FERMT2 MUTATED        3      0      2      7
  FERMT2 WILD-TYPE     92     74    119     73
D349V6, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              0               74
  CLUS_3              2              119
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FERMT2 MUTATED        3      3      4      1      1      0
  FERMT2 WILD-TYPE     49     61     68    103     39     59
D349V7, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              3               61
  CLUS_3              4               68
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FERMT2 MUTATED       12      0      0
  FERMT2 WILD-TYPE    205     75     99
D349V8, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1             12              205
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FERMT2 MUTATED        8      1      1
  FERMT2 WILD-TYPE    113    107     71
D349V9, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              8              113
  CLUS_2              1              107
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FERMT2 MUTATED        4      0      1      0      5
  FERMT2 WILD-TYPE     84     66     44     55     42
D349V10, multiclass
        clus
vv       FERMT2 MUTATED FERMT2 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(350) Variable = PPP1R13B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R13B MUTATED        4     10      0      0
  PPP1R13B WILD-TYPE    200    127     47      3
D350V1, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                4                200
  CLUS_2               10                127
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R13B MUTATED        1      5      2      1      2
  PPP1R13B WILD-TYPE     38     91     42     87     78
D350V2, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                5                 91
  CLUS_3                2                 42
  CLUS_4                1                 87
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R13B MUTATED        2      5      1      1      1
  PPP1R13B WILD-TYPE     24     74     72     81     57
D350V3, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                5                 74
  CLUS_3                1                 72
  CLUS_4                1                 81
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R13B MUTATED        4      0      5      1
  PPP1R13B WILD-TYPE    123     51     66     68
D350V4, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                4                123
  CLUS_2                0                 51
  CLUS_3                5                 66
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R13B MUTATED        1      2      6      4      1
  PPP1R13B WILD-TYPE     83     83     79     65     46
D350V5, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 83
  CLUS_3                6                 79
  CLUS_4                4                 65
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R13B MUTATED        6      2      3      3
  PPP1R13B WILD-TYPE     89     72    118     77
D350V6, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                6                 89
  CLUS_2                2                 72
  CLUS_3                3                118
  CLUS_4                3                 77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPP1R13B MUTATED        3      6      2      1      1      1
  PPP1R13B WILD-TYPE     49     58     70    103     39     58
D350V7, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                6                 58
  CLUS_3                2                 70
  CLUS_4                1                103
  CLUS_5                1                 39
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R13B MUTATED       11      1      2
  PPP1R13B WILD-TYPE    206     74     97
D350V8, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1               11                206
  CLUS_2                1                 74
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R13B MUTATED        4      1      5
  PPP1R13B WILD-TYPE    117    107     67
D350V9, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                4                117
  CLUS_2                1                107
  CLUS_3                5                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R13B MUTATED        3      0      4      1      2
  PPP1R13B WILD-TYPE     85     66     41     54     45
D350V10, multiclass
        clus
vv       PPP1R13B MUTATED PPP1R13B WILD-TYPE
  CLUS_1                3                 85
  CLUS_2                0                 66
  CLUS_3                4                 41
  CLUS_4                1                 54
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(351) Variable = KIAA0240 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0240 MUTATED        3     10      0      0
  KIAA0240 WILD-TYPE    201    127     47      3
D351V1, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                3                201
  CLUS_2               10                127
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0240 MUTATED        0      4      1      2      3
  KIAA0240 WILD-TYPE     39     92     43     86     77
D351V2, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                4                 92
  CLUS_3                1                 43
  CLUS_4                2                 86
  CLUS_5                3                 77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0240 MUTATED        1      4      2      0      2
  KIAA0240 WILD-TYPE     25     75     71     82     56
D351V3, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                4                 75
  CLUS_3                2                 71
  CLUS_4                0                 82
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0240 MUTATED        2      4      3      0
  KIAA0240 WILD-TYPE    125     47     68     69
D351V4, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                4                 47
  CLUS_3                3                 68
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0240 MUTATED        2      3      5      2      1
  KIAA0240 WILD-TYPE     82     82     80     67     46
D351V5, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                2                 82
  CLUS_2                3                 82
  CLUS_3                5                 80
  CLUS_4                2                 67
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0240 MUTATED        3      1      4      5
  KIAA0240 WILD-TYPE     92     73    117     75
D351V6, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                3                 92
  CLUS_2                1                 73
  CLUS_3                4                117
  CLUS_4                5                 75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0240 MUTATED        3      5      1      3      0      1
  KIAA0240 WILD-TYPE     49     59     71    101     40     58
D351V7, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                5                 59
  CLUS_3                1                 71
  CLUS_4                3                101
  CLUS_5                0                 40
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0240 MUTATED        8      2      3
  KIAA0240 WILD-TYPE    209     73     96
D351V8, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                8                209
  CLUS_2                2                 73
  CLUS_3                3                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0240 MUTATED        3      4      2
  KIAA0240 WILD-TYPE    118    104     70
D351V9, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                3                118
  CLUS_2                4                104
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0240 MUTATED        2      1      2      1      3
  KIAA0240 WILD-TYPE     86     65     43     54     44
D351V10, multiclass
        clus
vv       KIAA0240 MUTATED KIAA0240 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                1                 65
  CLUS_3                2                 43
  CLUS_4                1                 54
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(352) Variable = TP53BP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53BP1 MUTATED        5     14      3      0
  TP53BP1 WILD-TYPE    199    123     44      3
D352V1, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               5               199
  CLUS_2              14               123
  CLUS_3               3                44
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53BP1 MUTATED        2      8      2      3      3
  TP53BP1 WILD-TYPE     37     88     42     85     77
D352V2, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               2                37
  CLUS_2               8                88
  CLUS_3               2                42
  CLUS_4               3                85
  CLUS_5               3                77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53BP1 MUTATED        1      8      4      3      2
  TP53BP1 WILD-TYPE     25     71     69     79     56
D352V3, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               8                71
  CLUS_3               4                69
  CLUS_4               3                79
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53BP1 MUTATED        3      7      6      2
  TP53BP1 WILD-TYPE    124     44     65     67
D352V4, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               7                44
  CLUS_3               6                65
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53BP1 MUTATED        1      1      9      4      5
  TP53BP1 WILD-TYPE     83     84     76     65     42
D352V5, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               9                76
  CLUS_4               4                65
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53BP1 MUTATED        7      2      5      6
  TP53BP1 WILD-TYPE     88     72    116     74
D352V6, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               7                88
  CLUS_2               2                72
  CLUS_3               5               116
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TP53BP1 MUTATED        7      8      5      0      2      0
  TP53BP1 WILD-TYPE     45     56     67    104     38     59
D352V7, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               7                45
  CLUS_2               8                56
  CLUS_3               5                67
  CLUS_4               0               104
  CLUS_5               2                38
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TP53BP1 MUTATED       18      2      2
  TP53BP1 WILD-TYPE    199     73     97
D352V8, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1              18               199
  CLUS_2               2                73
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TP53BP1 MUTATED        9      0      6
  TP53BP1 WILD-TYPE    112    108     66
D352V9, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               9               112
  CLUS_2               0               108
  CLUS_3               6                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TP53BP1 MUTATED        2      0      5      0      8
  TP53BP1 WILD-TYPE     86     66     40     55     39
D352V10, multiclass
        clus
vv       TP53BP1 MUTATED TP53BP1 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               5                40
  CLUS_4               0                55
  CLUS_5               8                39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(353) Variable = CHPF2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHPF2 MUTATED        3     11      2      0
  CHPF2 WILD-TYPE    201    126     45      3
D353V1, multiclass
        clus
vv       CHPF2 MUTATED CHPF2 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            11             126
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHPF2 MUTATED        0     10      3      0      0
  CHPF2 WILD-TYPE     39     86     41     88     80
D353V2, multiclass
        clus
vv       CHPF2 MUTATED CHPF2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2            10              86
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHPF2 MUTATED        1      5      3      2      4
  CHPF2 WILD-TYPE     25     74     70     80     54
D353V3, multiclass
        clus
vv       CHPF2 MUTATED CHPF2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHPF2 MUTATED        2      7      5      1
  CHPF2 WILD-TYPE    125     44     66     68
D353V4, multiclass
        clus
vv       CHPF2 MUTATED CHPF2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             7              44
  CLUS_3             5              66
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHPF2 MUTATED        0      3      9      3      1
  CHPF2 WILD-TYPE     84     82     76     66     46
D353V5, multiclass
        clus
vv       CHPF2 MUTATED CHPF2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             9              76
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHPF2 MUTATED        5      4      1      6
  CHPF2 WILD-TYPE     90     70    120     74
D353V6, multiclass
        clus
vv       CHPF2 MUTATED CHPF2 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             4              70
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHPF2 MUTATED        2      7      5      2      0      0
  CHPF2 WILD-TYPE     50     57     67    102     40     59
D353V7, multiclass
        clus
vv       CHPF2 MUTATED CHPF2 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             7              57
  CLUS_3             5              67
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHPF2 MUTATED       12      1      3
  CHPF2 WILD-TYPE    205     74     96
D353V8, multiclass
        clus
vv       CHPF2 MUTATED CHPF2 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             1              74
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHPF2 MUTATED        4      3      6
  CHPF2 WILD-TYPE    117    105     66
D353V9, multiclass
        clus
vv       CHPF2 MUTATED CHPF2 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             3             105
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHPF2 MUTATED        2      2      4      0      5
  CHPF2 WILD-TYPE     86     64     41     55     42
D353V10, multiclass
        clus
vv       CHPF2 MUTATED CHPF2 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             2              64
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(354) Variable = GPR141 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR141 MUTATED        2      9      0      0
  GPR141 WILD-TYPE    202    128     47      3
D354V1, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              9              128
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR141 MUTATED        0      7      2      0      1
  GPR141 WILD-TYPE     39     89     42     88     79
D354V2, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              7               89
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR141 MUTATED        0      3      5      1      2
  GPR141 WILD-TYPE     26     76     68     81     56
D354V3, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              5               68
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR141 MUTATED        1      7      1      2
  GPR141 WILD-TYPE    126     44     70     67
D354V4, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              7               44
  CLUS_3              1               70
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR141 MUTATED        0      2      6      1      1
  GPR141 WILD-TYPE     84     83     79     68     46
D354V5, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR141 MUTATED        2      3      1      4
  GPR141 WILD-TYPE     93     71    120     76
D354V6, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              3               71
  CLUS_3              1              120
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR141 MUTATED        3      4      1      2      1      0
  GPR141 WILD-TYPE     49     60     71    102     39     59
D354V7, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR141 MUTATED        9      1      1
  GPR141 WILD-TYPE    208     74     98
D354V8, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR141 MUTATED        2      1      5
  GPR141 WILD-TYPE    119    107     67
D354V9, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              1              107
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR141 MUTATED        4      1      2      0      1
  GPR141 WILD-TYPE     84     65     43     55     46
D354V10, multiclass
        clus
vv       GPR141 MUTATED GPR141 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(355) Variable = PPP1R15A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R15A MUTATED        0      5      0      0
  PPP1R15A WILD-TYPE    204    132     47      3
D355V1, multiclass
        clus
vv       PPP1R15A MUTATED PPP1R15A WILD-TYPE
  CLUS_1                0                204
  CLUS_2                5                132
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R15A MUTATED        1      2      1      0      0
  PPP1R15A WILD-TYPE     38     94     43     88     80
D355V2, multiclass
        clus
vv       PPP1R15A MUTATED PPP1R15A WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                2                 94
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R15A MUTATED        0      2      0      1      1
  PPP1R15A WILD-TYPE     26     77     73     81     57
D355V3, multiclass
        clus
vv       PPP1R15A MUTATED PPP1R15A WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                2                 77
  CLUS_3                0                 73
  CLUS_4                1                 81
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R15A MUTATED        0      2      1      1
  PPP1R15A WILD-TYPE    127     49     70     68
D355V4, multiclass
        clus
vv       PPP1R15A MUTATED PPP1R15A WILD-TYPE
  CLUS_1                0                127
  CLUS_2                2                 49
  CLUS_3                1                 70
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R15A MUTATED        0      2      1      0      2
  PPP1R15A WILD-TYPE     84     83     84     69     45
D355V5, multiclass
        clus
vv       PPP1R15A MUTATED PPP1R15A WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                2                 83
  CLUS_3                1                 84
  CLUS_4                0                 69
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R15A MUTATED        1      2      0      2
  PPP1R15A WILD-TYPE     94     72    121     78
D355V6, multiclass
        clus
vv       PPP1R15A MUTATED PPP1R15A WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                2                 72
  CLUS_3                0                121
  CLUS_4                2                 78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPP1R15A MUTATED        1      3      0      0      1      0
  PPP1R15A WILD-TYPE     51     61     72    104     39     59
D355V7, multiclass
        clus
vv       PPP1R15A MUTATED PPP1R15A WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                3                 61
  CLUS_3                0                 72
  CLUS_4                0                104
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R15A MUTATED        4      0      1
  PPP1R15A WILD-TYPE    213     75     98
D355V8, multiclass
        clus
vv       PPP1R15A MUTATED PPP1R15A WILD-TYPE
  CLUS_1                4                213
  CLUS_2                0                 75
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R15A MUTATED        1      1      2
  PPP1R15A WILD-TYPE    120    107     70
D355V9, multiclass
        clus
vv       PPP1R15A MUTATED PPP1R15A WILD-TYPE
  CLUS_1                1                120
  CLUS_2                1                107
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R15A MUTATED        1      0      1      0      2
  PPP1R15A WILD-TYPE     87     66     44     55     45
D355V10, multiclass
        clus
vv       PPP1R15A MUTATED PPP1R15A WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                0                 66
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(356) Variable = KYNU MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KYNU MUTATED        2      9      1      0
  KYNU WILD-TYPE    202    128     46      3
D356V1, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            2            202
  CLUS_2            9            128
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KYNU MUTATED        1      3      2      1      2
  KYNU WILD-TYPE     38     93     42     87     78
D356V2, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            1             38
  CLUS_2            3             93
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KYNU MUTATED        1      4      4      0      3
  KYNU WILD-TYPE     25     75     69     82     55
D356V3, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             75
  CLUS_3            4             69
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KYNU MUTATED        4      4      3      1
  KYNU WILD-TYPE    123     47     68     68
D356V4, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            4            123
  CLUS_2            4             47
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KYNU MUTATED        1      2      7      0      2
  KYNU WILD-TYPE     83     83     78     69     45
D356V5, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            1             83
  CLUS_2            2             83
  CLUS_3            7             78
  CLUS_4            0             69
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KYNU MUTATED        1      0      4      7
  KYNU WILD-TYPE     94     74    117     73
D356V6, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            1             94
  CLUS_2            0             74
  CLUS_3            4            117
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KYNU MUTATED        3      6      2      0      0      1
  KYNU WILD-TYPE     49     58     70    104     40     58
D356V7, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            3             49
  CLUS_2            6             58
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KYNU MUTATED        9      1      2
  KYNU WILD-TYPE    208     74     97
D356V8, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            9            208
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KYNU MUTATED        3      0      4
  KYNU WILD-TYPE    118    108     68
D356V9, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KYNU MUTATED        2      0      3      0      2
  KYNU WILD-TYPE     86     66     42     55     45
D356V10, multiclass
        clus
vv       KYNU MUTATED KYNU WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(357) Variable = RIF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIF1 MUTATED        3     19      1      1
  RIF1 WILD-TYPE    201    118     46      2
D357V1, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            3            201
  CLUS_2           19            118
  CLUS_3            1             46
  CLUS_4            1              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIF1 MUTATED        1     11      3      1      3
  RIF1 WILD-TYPE     38     85     41     87     77
D357V2, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2           11             85
  CLUS_3            3             41
  CLUS_4            1             87
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIF1 MUTATED        2      8      3      1      6
  RIF1 WILD-TYPE     24     71     70     81     52
D357V3, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            8             71
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            6             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIF1 MUTATED        6     10      3      1
  RIF1 WILD-TYPE    121     41     68     68
D357V4, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            6            121
  CLUS_2           10             41
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIF1 MUTATED        1      3     11      5      4
  RIF1 WILD-TYPE     83     82     74     64     43
D357V5, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            3             82
  CLUS_3           11             74
  CLUS_4            5             64
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIF1 MUTATED        9      3      1     11
  RIF1 WILD-TYPE     86     71    120     69
D357V6, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            9             86
  CLUS_2            3             71
  CLUS_3            1            120
  CLUS_4           11             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RIF1 MUTATED        8      9      2      3      2      0
  RIF1 WILD-TYPE     44     55     70    101     38     59
D357V7, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            8             44
  CLUS_2            9             55
  CLUS_3            2             70
  CLUS_4            3            101
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RIF1 MUTATED       21      1      2
  RIF1 WILD-TYPE    196     74     97
D357V8, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1           21            196
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RIF1 MUTATED       10      2      6
  RIF1 WILD-TYPE    111    106     66
D357V9, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1           10            111
  CLUS_2            2            106
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIF1 MUTATED        7      0      4      1      6
  RIF1 WILD-TYPE     81     66     41     54     41
D357V10, multiclass
        clus
vv       RIF1 MUTATED RIF1 WILD-TYPE
  CLUS_1            7             81
  CLUS_2            0             66
  CLUS_3            4             41
  CLUS_4            1             54
  CLUS_5            6             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(358) Variable = TBC1D10C MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D10C MUTATED        0      8      1      0
  TBC1D10C WILD-TYPE    204    129     46      3
D358V1, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                0                204
  CLUS_2                8                129
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D10C MUTATED        0      6      2      0      0
  TBC1D10C WILD-TYPE     39     90     42     88     80
D358V2, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                6                 90
  CLUS_3                2                 42
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D10C MUTATED        0      3      1      0      3
  TBC1D10C WILD-TYPE     26     76     72     82     55
D358V3, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                3                 76
  CLUS_3                1                 72
  CLUS_4                0                 82
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D10C MUTATED        0      4      3      0
  TBC1D10C WILD-TYPE    127     47     68     69
D358V4, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                0                127
  CLUS_2                4                 47
  CLUS_3                3                 68
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D10C MUTATED        0      1      7      1      0
  TBC1D10C WILD-TYPE     84     84     78     68     47
D358V5, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                7                 78
  CLUS_4                1                 68
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D10C MUTATED        1      0      0      8
  TBC1D10C WILD-TYPE     94     74    121     72
D358V6, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                0                 74
  CLUS_3                0                121
  CLUS_4                8                 72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TBC1D10C MUTATED        3      2      2      2      0      0
  TBC1D10C WILD-TYPE     49     62     70    102     40     59
D358V7, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                2                 62
  CLUS_3                2                 70
  CLUS_4                2                102
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TBC1D10C MUTATED        9      0      0
  TBC1D10C WILD-TYPE    208     75     99
D358V8, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                9                208
  CLUS_2                0                 75
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TBC1D10C MUTATED        3      2      2
  TBC1D10C WILD-TYPE    118    106     70
D358V9, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                3                118
  CLUS_2                2                106
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D10C MUTATED        2      0      1      0      4
  TBC1D10C WILD-TYPE     86     66     44     55     43
D358V10, multiclass
        clus
vv       TBC1D10C MUTATED TBC1D10C WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                0                 66
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(359) Variable = UHRF1BP1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UHRF1BP1 MUTATED        1     16      2      0
  UHRF1BP1 WILD-TYPE    203    121     45      3
D359V1, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                1                203
  CLUS_2               16                121
  CLUS_3                2                 45
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UHRF1BP1 MUTATED        1      9      3      0      3
  UHRF1BP1 WILD-TYPE     38     87     41     88     77
D359V2, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                9                 87
  CLUS_3                3                 41
  CLUS_4                0                 88
  CLUS_5                3                 77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UHRF1BP1 MUTATED        1      7      3      1      3
  UHRF1BP1 WILD-TYPE     25     72     70     81     55
D359V3, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                7                 72
  CLUS_3                3                 70
  CLUS_4                1                 81
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UHRF1BP1 MUTATED        2      4      7      2
  UHRF1BP1 WILD-TYPE    125     47     64     67
D359V4, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                4                 47
  CLUS_3                7                 64
  CLUS_4                2                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UHRF1BP1 MUTATED        1      2      7      4      3
  UHRF1BP1 WILD-TYPE     83     83     78     65     44
D359V5, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 83
  CLUS_3                7                 78
  CLUS_4                4                 65
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UHRF1BP1 MUTATED        8      3      3      3
  UHRF1BP1 WILD-TYPE     87     71    118     77
D359V6, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                8                 87
  CLUS_2                3                 71
  CLUS_3                3                118
  CLUS_4                3                 77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UHRF1BP1 MUTATED        2      8      4      3      1      1
  UHRF1BP1 WILD-TYPE     50     56     68    101     39     58
D359V7, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                8                 56
  CLUS_3                4                 68
  CLUS_4                3                101
  CLUS_5                1                 39
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  UHRF1BP1 MUTATED       15      3      1
  UHRF1BP1 WILD-TYPE    202     72     98
D359V8, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1               15                202
  CLUS_2                3                 72
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  UHRF1BP1 MUTATED        4      1     10
  UHRF1BP1 WILD-TYPE    117    107     62
D359V9, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                1                107
  CLUS_3               10                 62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UHRF1BP1 MUTATED        3      2      6      0      4
  UHRF1BP1 WILD-TYPE     85     64     39     55     43
D359V10, multiclass
        clus
vv       UHRF1BP1 MUTATED UHRF1BP1 WILD-TYPE
  CLUS_1                3                 85
  CLUS_2                2                 64
  CLUS_3                6                 39
  CLUS_4                0                 55
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(360) Variable = DLAT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLAT MUTATED        0      8      0      0
  DLAT WILD-TYPE    204    129     47      3
D360V1, multiclass
        clus
vv       DLAT MUTATED DLAT WILD-TYPE
  CLUS_1            0            204
  CLUS_2            8            129
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLAT MUTATED        0      5      1      0      0
  DLAT WILD-TYPE     39     91     43     88     80
D360V2, multiclass
        clus
vv       DLAT MUTATED DLAT WILD-TYPE
  CLUS_1            0             39
  CLUS_2            5             91
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLAT MUTATED        0      3      2      0      1
  DLAT WILD-TYPE     26     76     71     82     57
D360V3, multiclass
        clus
vv       DLAT MUTATED DLAT WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLAT MUTATED        0      5      1      0
  DLAT WILD-TYPE    127     46     70     69
D360V4, multiclass
        clus
vv       DLAT MUTATED DLAT WILD-TYPE
  CLUS_1            0            127
  CLUS_2            5             46
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLAT MUTATED        0      2      3      1      1
  DLAT WILD-TYPE     84     83     82     68     46
D360V5, multiclass
        clus
vv       DLAT MUTATED DLAT WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            3             82
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLAT MUTATED        2      2      0      3
  DLAT WILD-TYPE     93     72    121     77
D360V6, multiclass
        clus
vv       DLAT MUTATED DLAT WILD-TYPE
  CLUS_1            2             93
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DLAT MUTATED        3      3      1      0      1      0
  DLAT WILD-TYPE     49     61     71    104     39     59
D360V7, multiclass
        clus
vv       DLAT MUTATED DLAT WILD-TYPE
  CLUS_1            3             49
  CLUS_2            3             61
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLAT MUTATED        6      0      2
  DLAT WILD-TYPE    211     75     97
D360V8, multiclass
        clus
vv       DLAT MUTATED DLAT WILD-TYPE
  CLUS_1            6            211
  CLUS_2            0             75
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLAT MUTATED        0      1      3
  DLAT WILD-TYPE    121    107     69
D360V9, multiclass
        clus
vv       DLAT MUTATED DLAT WILD-TYPE
  CLUS_1            0            121
  CLUS_2            1            107
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLAT MUTATED        1      0      1      0      2
  DLAT WILD-TYPE     87     66     44     55     45
D360V10, multiclass
        clus
vv       DLAT MUTATED DLAT WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(361) Variable = CD93 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD93 MUTATED        4     13      1      0
  CD93 WILD-TYPE    200    124     46      3
D361V1, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            4            200
  CLUS_2           13            124
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD93 MUTATED        0     10      1      1      1
  CD93 WILD-TYPE     39     86     43     87     79
D361V2, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            0             39
  CLUS_2           10             86
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD93 MUTATED        1      6      7      1      2
  CD93 WILD-TYPE     25     73     66     81     56
D361V3, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            6             73
  CLUS_3            7             66
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD93 MUTATED        3      8      3      3
  CD93 WILD-TYPE    124     43     68     66
D361V4, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            8             43
  CLUS_3            3             68
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD93 MUTATED        3      4      7      0      2
  CD93 WILD-TYPE     81     81     78     69     45
D361V5, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            3             81
  CLUS_2            4             81
  CLUS_3            7             78
  CLUS_4            0             69
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD93 MUTATED        3      4      1      8
  CD93 WILD-TYPE     92     70    120     72
D361V6, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            4             70
  CLUS_3            1            120
  CLUS_4            8             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD93 MUTATED        5      5      3      1      2      2
  CD93 WILD-TYPE     47     59     69    103     38     57
D361V7, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            5             47
  CLUS_2            5             59
  CLUS_3            3             69
  CLUS_4            1            103
  CLUS_5            2             38
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD93 MUTATED       13      1      4
  CD93 WILD-TYPE    204     74     95
D361V8, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1           13            204
  CLUS_2            1             74
  CLUS_3            4             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD93 MUTATED        4      1      4
  CD93 WILD-TYPE    117    107     68
D361V9, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            1            107
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD93 MUTATED        5      0      1      1      2
  CD93 WILD-TYPE     83     66     44     54     45
D361V10, multiclass
        clus
vv       CD93 MUTATED CD93 WILD-TYPE
  CLUS_1            5             83
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(362) Variable = SGOL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGOL2 MUTATED        0     10      3      0
  SGOL2 WILD-TYPE    204    127     44      3
D362V1, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            10             127
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGOL2 MUTATED        2      5      3      0      0
  SGOL2 WILD-TYPE     37     91     41     88     80
D362V2, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             5              91
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGOL2 MUTATED        0      4      4      0      4
  SGOL2 WILD-TYPE     26     75     69     82     54
D362V3, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGOL2 MUTATED        2      6      3      1
  SGOL2 WILD-TYPE    125     45     68     68
D362V4, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             6              45
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGOL2 MUTATED        0      2      7      2      1
  SGOL2 WILD-TYPE     84     83     78     67     46
D362V5, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             7              78
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGOL2 MUTATED        4      1      1      6
  SGOL2 WILD-TYPE     91     73    120     74
D362V6, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SGOL2 MUTATED        1      6      2      2      2      0
  SGOL2 WILD-TYPE     51     58     70    102     38     59
D362V7, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             6              58
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SGOL2 MUTATED       10      1      2
  SGOL2 WILD-TYPE    207     74     97
D362V8, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SGOL2 MUTATED        3      2      4
  SGOL2 WILD-TYPE    118    106     68
D362V9, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGOL2 MUTATED        5      1      2      0      1
  SGOL2 WILD-TYPE     83     65     43     55     46
D362V10, multiclass
        clus
vv       SGOL2 MUTATED SGOL2 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(363) Variable = ADNP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADNP2 MUTATED        2     14      3      0
  ADNP2 WILD-TYPE    202    123     44      3
D363V1, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            14             123
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADNP2 MUTATED        1     10      4      1      0
  ADNP2 WILD-TYPE     38     86     40     87     80
D363V2, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2            10              86
  CLUS_3             4              40
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADNP2 MUTATED        1      7      5      0      3
  ADNP2 WILD-TYPE     25     72     68     82     55
D363V3, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             7              72
  CLUS_3             5              68
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADNP2 MUTATED        2     10      4      0
  ADNP2 WILD-TYPE    125     41     67     69
D363V4, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2            10              41
  CLUS_3             4              67
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADNP2 MUTATED        1      1      9      2      4
  ADNP2 WILD-TYPE     83     84     76     67     43
D363V5, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             9              76
  CLUS_4             2              67
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADNP2 MUTATED        6      0      2      9
  ADNP2 WILD-TYPE     89     74    119     71
D363V6, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             0              74
  CLUS_3             2             119
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADNP2 MUTATED        5      8      4      0      1      1
  ADNP2 WILD-TYPE     47     56     68    104     39     58
D363V7, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             8              56
  CLUS_3             4              68
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADNP2 MUTATED       18      0      1
  ADNP2 WILD-TYPE    199     75     98
D363V8, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1            18             199
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADNP2 MUTATED        7      1      7
  ADNP2 WILD-TYPE    114    107     65
D363V9, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             1             107
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADNP2 MUTATED        4      0      4      1      6
  ADNP2 WILD-TYPE     84     66     41     54     41
D363V10, multiclass
        clus
vv       ADNP2 MUTATED ADNP2 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             4              41
  CLUS_4             1              54
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(364) Variable = DPP7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPP7 MUTATED        0      9      0      0
  DPP7 WILD-TYPE    204    128     47      3
D364V1, multiclass
        clus
vv       DPP7 MUTATED DPP7 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            9            128
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DPP7 MUTATED        0      6      1      0      0
  DPP7 WILD-TYPE     39     90     43     88     80
D364V2, multiclass
        clus
vv       DPP7 MUTATED DPP7 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            6             90
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DPP7 MUTATED        1      1      2      2      1
  DPP7 WILD-TYPE     25     78     71     80     57
D364V3, multiclass
        clus
vv       DPP7 MUTATED DPP7 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             78
  CLUS_3            2             71
  CLUS_4            2             80
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPP7 MUTATED        2      2      1      2
  DPP7 WILD-TYPE    125     49     70     67
D364V4, multiclass
        clus
vv       DPP7 MUTATED DPP7 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            2             49
  CLUS_3            1             70
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DPP7 MUTATED        0      1      6      1      1
  DPP7 WILD-TYPE     84     84     79     68     46
D364V5, multiclass
        clus
vv       DPP7 MUTATED DPP7 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            6             79
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPP7 MUTATED        1      2      0      6
  DPP7 WILD-TYPE     94     72    121     74
D364V6, multiclass
        clus
vv       DPP7 MUTATED DPP7 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DPP7 MUTATED        2      4      1      1      1      0
  DPP7 WILD-TYPE     50     60     71    103     39     59
D364V7, multiclass
        clus
vv       DPP7 MUTATED DPP7 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            4             60
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DPP7 MUTATED        7      1      1
  DPP7 WILD-TYPE    210     74     98
D364V8, multiclass
        clus
vv       DPP7 MUTATED DPP7 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DPP7 MUTATED        3      1      2
  DPP7 WILD-TYPE    118    107     70
D364V9, multiclass
        clus
vv       DPP7 MUTATED DPP7 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DPP7 MUTATED        4      0      1      0      1
  DPP7 WILD-TYPE     84     66     44     55     46
D364V10, multiclass
        clus
vv       DPP7 MUTATED DPP7 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(365) Variable = CSGALNACT1 MUTATION ANALYSIS
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT1 MUTATED        6     10      3      0
  CSGALNACT1 WILD-TYPE    198    127     44      3
D365V1, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  6                  198
  CLUS_2                 10                  127
  CLUS_3                  3                   44
  CLUS_4                  0                    3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSGALNACT1 MUTATED        2      5      1      5      2
  CSGALNACT1 WILD-TYPE     37     91     43     83     78
D365V2, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  2                   37
  CLUS_2                  5                   91
  CLUS_3                  1                   43
  CLUS_4                  5                   83
  CLUS_5                  2                   78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSGALNACT1 MUTATED        1      7      5      3      1
  CSGALNACT1 WILD-TYPE     25     72     68     79     57
D365V3, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  1                   25
  CLUS_2                  7                   72
  CLUS_3                  5                   68
  CLUS_4                  3                   79
  CLUS_5                  1                   57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT1 MUTATED        5      6      3      3
  CSGALNACT1 WILD-TYPE    122     45     68     66
D365V4, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  5                  122
  CLUS_2                  6                   45
  CLUS_3                  3                   68
  CLUS_4                  3                   66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSGALNACT1 MUTATED        4      3      7      1      1
  CSGALNACT1 WILD-TYPE     80     82     78     68     46
D365V5, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  4                   80
  CLUS_2                  3                   82
  CLUS_3                  7                   78
  CLUS_4                  1                   68
  CLUS_5                  1                   46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSGALNACT1 MUTATED        3      3      5      5
  CSGALNACT1 WILD-TYPE     92     71    116     75
D365V6, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  3                   92
  CLUS_2                  3                   71
  CLUS_3                  5                  116
  CLUS_4                  5                   75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSGALNACT1 MUTATED        3      4      2      4      1      5
  CSGALNACT1 WILD-TYPE     49     60     70    100     39     54
D365V7, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  3                   49
  CLUS_2                  4                   60
  CLUS_3                  2                   70
  CLUS_4                  4                  100
  CLUS_5                  1                   39
  CLUS_6                  5                   54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT1 MUTATED        8      5      6
  CSGALNACT1 WILD-TYPE    209     70     93
D365V8, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  8                  209
  CLUS_2                  5                   70
  CLUS_3                  6                   93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3
  CSGALNACT1 MUTATED       10      2      3
  CSGALNACT1 WILD-TYPE    111    106     69
D365V9, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                 10                  111
  CLUS_2                  2                  106
  CLUS_3                  3                   69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                      vv
clus                   CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSGALNACT1 MUTATED        4      2      1      5      3
  CSGALNACT1 WILD-TYPE     84     64     44     50     44
D365V10, multiclass
        clus
vv       CSGALNACT1 MUTATED CSGALNACT1 WILD-TYPE
  CLUS_1                  4                   84
  CLUS_2                  2                   64
  CLUS_3                  1                   44
  CLUS_4                  5                   50
  CLUS_5                  3                   44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(366) Variable = CNNM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNNM1 MUTATED        1     10      0      0
  CNNM1 WILD-TYPE    203    127     47      3
D366V1, multiclass
        clus
vv       CNNM1 MUTATED CNNM1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            10             127
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNNM1 MUTATED        1      5      3      0      1
  CNNM1 WILD-TYPE     38     91     41     88     79
D366V2, multiclass
        clus
vv       CNNM1 MUTATED CNNM1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNNM1 MUTATED        0      4      4      1      1
  CNNM1 WILD-TYPE     26     75     69     81     57
D366V3, multiclass
        clus
vv       CNNM1 MUTATED CNNM1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNNM1 MUTATED        1      5      4      0
  CNNM1 WILD-TYPE    126     46     67     69
D366V4, multiclass
        clus
vv       CNNM1 MUTATED CNNM1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             5              46
  CLUS_3             4              67
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNNM1 MUTATED        0      2      6      1      3
  CNNM1 WILD-TYPE     84     83     79     68     44
D366V5, multiclass
        clus
vv       CNNM1 MUTATED CNNM1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNNM1 MUTATED        3      1      1      7
  CNNM1 WILD-TYPE     92     73    120     73
D366V6, multiclass
        clus
vv       CNNM1 MUTATED CNNM1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNNM1 MUTATED        3      5      4      0      0      0
  CNNM1 WILD-TYPE     49     59     68    104     40     59
D366V7, multiclass
        clus
vv       CNNM1 MUTATED CNNM1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             5              59
  CLUS_3             4              68
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNNM1 MUTATED       11      0      1
  CNNM1 WILD-TYPE    206     75     98
D366V8, multiclass
        clus
vv       CNNM1 MUTATED CNNM1 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNNM1 MUTATED        5      0      3
  CNNM1 WILD-TYPE    116    108     69
D366V9, multiclass
        clus
vv       CNNM1 MUTATED CNNM1 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             0             108
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNNM1 MUTATED        0      0      3      0      5
  CNNM1 WILD-TYPE     88     66     42     55     42
D366V10, multiclass
        clus
vv       CNNM1 MUTATED CNNM1 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(367) Variable = IFRD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFRD1 MUTATED        1      8      1      0
  IFRD1 WILD-TYPE    203    129     46      3
D367V1, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFRD1 MUTATED        0      2      4      1      0
  IFRD1 WILD-TYPE     39     94     40     87     80
D367V2, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             2              94
  CLUS_3             4              40
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFRD1 MUTATED        0      3      2      0      4
  IFRD1 WILD-TYPE     26     76     71     82     54
D367V3, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFRD1 MUTATED        1      4      2      2
  IFRD1 WILD-TYPE    126     47     69     67
D367V4, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFRD1 MUTATED        0      2      5      1      1
  IFRD1 WILD-TYPE     84     83     80     68     46
D367V5, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFRD1 MUTATED        1      2      1      5
  IFRD1 WILD-TYPE     94     72    120     75
D367V6, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IFRD1 MUTATED        1      7      1      0      1      0
  IFRD1 WILD-TYPE     51     57     71    104     39     59
D367V7, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             7              57
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFRD1 MUTATED       10      0      0
  IFRD1 WILD-TYPE    207     75     99
D367V8, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IFRD1 MUTATED        2      0      5
  IFRD1 WILD-TYPE    119    108     67
D367V9, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFRD1 MUTATED        3      0      2      0      2
  IFRD1 WILD-TYPE     85     66     43     55     45
D367V10, multiclass
        clus
vv       IFRD1 MUTATED IFRD1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(368) Variable = IGFBP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP1 MUTATED        1      8      2      0
  IGFBP1 WILD-TYPE    203    129     45      3
D368V1, multiclass
        clus
vv       IGFBP1 MUTATED IGFBP1 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              8              129
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGFBP1 MUTATED        1      6      2      1      1
  IGFBP1 WILD-TYPE     38     90     42     87     79
D368V2, multiclass
        clus
vv       IGFBP1 MUTATED IGFBP1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               90
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGFBP1 MUTATED        1      5      0      0      4
  IGFBP1 WILD-TYPE     25     74     73     82     54
D368V3, multiclass
        clus
vv       IGFBP1 MUTATED IGFBP1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              5               74
  CLUS_3              0               73
  CLUS_4              0               82
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP1 MUTATED        1      6      2      1
  IGFBP1 WILD-TYPE    126     45     69     68
D368V4, multiclass
        clus
vv       IGFBP1 MUTATED IGFBP1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              6               45
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGFBP1 MUTATED        1      1      8      0      1
  IGFBP1 WILD-TYPE     83     84     77     69     46
D368V5, multiclass
        clus
vv       IGFBP1 MUTATED IGFBP1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              8               77
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP1 MUTATED        3      2      1      5
  IGFBP1 WILD-TYPE     92     72    120     75
D368V6, multiclass
        clus
vv       IGFBP1 MUTATED IGFBP1 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IGFBP1 MUTATED        4      4      3      0      0      0
  IGFBP1 WILD-TYPE     48     60     69    104     40     59
D368V7, multiclass
        clus
vv       IGFBP1 MUTATED IGFBP1 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              4               60
  CLUS_3              3               69
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFBP1 MUTATED       10      0      1
  IGFBP1 WILD-TYPE    207     75     98
D368V8, multiclass
        clus
vv       IGFBP1 MUTATED IGFBP1 WILD-TYPE
  CLUS_1             10              207
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFBP1 MUTATED        5      1      5
  IGFBP1 WILD-TYPE    116    107     67
D368V9, multiclass
        clus
vv       IGFBP1 MUTATED IGFBP1 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              1              107
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGFBP1 MUTATED        5      0      3      0      3
  IGFBP1 WILD-TYPE     83     66     42     55     44
D368V10, multiclass
        clus
vv       IGFBP1 MUTATED IGFBP1 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(369) Variable = SH3KBP1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH3KBP1 MUTATED        4     10      1      0
  SH3KBP1 WILD-TYPE    200    127     46      3
D369V1, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               4               200
  CLUS_2              10               127
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3KBP1 MUTATED        2      5      1      1      2
  SH3KBP1 WILD-TYPE     37     91     43     87     78
D369V2, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               2                37
  CLUS_2               5                91
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3KBP1 MUTATED        1      4      5      1      2
  SH3KBP1 WILD-TYPE     25     75     68     81     56
D369V3, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               4                75
  CLUS_3               5                68
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH3KBP1 MUTATED        3      7      2      1
  SH3KBP1 WILD-TYPE    124     44     69     68
D369V4, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               7                44
  CLUS_3               2                69
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3KBP1 MUTATED        1      3      6      2      1
  SH3KBP1 WILD-TYPE     83     82     79     67     46
D369V5, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               3                82
  CLUS_3               6                79
  CLUS_4               2                67
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH3KBP1 MUTATED        2      2      3      6
  SH3KBP1 WILD-TYPE     93     72    118     74
D369V6, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               2                72
  CLUS_3               3               118
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SH3KBP1 MUTATED        4      5      3      1      2      0
  SH3KBP1 WILD-TYPE     48     59     69    103     38     59
D369V7, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               5                59
  CLUS_3               3                69
  CLUS_4               1               103
  CLUS_5               2                38
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SH3KBP1 MUTATED       13      1      1
  SH3KBP1 WILD-TYPE    204     74     98
D369V8, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1              13               204
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SH3KBP1 MUTATED        7      1      1
  SH3KBP1 WILD-TYPE    114    107     71
D369V9, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               7               114
  CLUS_2               1               107
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3KBP1 MUTATED        3      1      1      0      4
  SH3KBP1 WILD-TYPE     85     65     44     55     43
D369V10, multiclass
        clus
vv       SH3KBP1 MUTATED SH3KBP1 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               1                65
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(370) Variable = HIST1H1A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1A MUTATED        0      7      2      0
  HIST1H1A WILD-TYPE    204    130     45      3
D370V1, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                0                204
  CLUS_2                7                130
  CLUS_3                2                 45
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1A MUTATED        0      3      0      0      2
  HIST1H1A WILD-TYPE     39     93     44     88     78
D370V2, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                3                 93
  CLUS_3                0                 44
  CLUS_4                0                 88
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1A MUTATED        1      5      0      0      3
  HIST1H1A WILD-TYPE     25     74     73     82     55
D370V3, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                5                 74
  CLUS_3                0                 73
  CLUS_4                0                 82
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1A MUTATED        1      4      3      1
  HIST1H1A WILD-TYPE    126     47     68     68
D370V4, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                1                126
  CLUS_2                4                 47
  CLUS_3                3                 68
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1A MUTATED        1      0      4      1      1
  HIST1H1A WILD-TYPE     83     85     81     68     46
D370V5, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                0                 85
  CLUS_3                4                 81
  CLUS_4                1                 68
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1A MUTATED        2      1      1      3
  HIST1H1A WILD-TYPE     93     73    120     77
D370V6, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                3                 77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIST1H1A MUTATED        0      5      1      2      0      1
  HIST1H1A WILD-TYPE     52     59     71    102     40     58
D370V7, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                0                 52
  CLUS_2                5                 59
  CLUS_3                1                 71
  CLUS_4                2                102
  CLUS_5                0                 40
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1A MUTATED        7      1      1
  HIST1H1A WILD-TYPE    210     74     98
D370V8, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                7                210
  CLUS_2                1                 74
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1A MUTATED        0      2      3
  HIST1H1A WILD-TYPE    121    106     69
D370V9, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                0                121
  CLUS_2                2                106
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1A MUTATED        1      1      2      0      1
  HIST1H1A WILD-TYPE     87     65     43     55     46
D370V10, multiclass
        clus
vv       HIST1H1A MUTATED HIST1H1A WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                1                 65
  CLUS_3                2                 43
  CLUS_4                0                 55
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(371) Variable = TUBE1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBE1 MUTATED        2      7      0      0
  TUBE1 WILD-TYPE    202    130     47      3
D371V1, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TUBE1 MUTATED        1      4      1      1      0
  TUBE1 WILD-TYPE     38     92     43     87     80
D371V2, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TUBE1 MUTATED        0      5      1      0      3
  TUBE1 WILD-TYPE     26     74     72     82     55
D371V3, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             5              74
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBE1 MUTATED        1      4      3      1
  TUBE1 WILD-TYPE    126     47     68     68
D371V4, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TUBE1 MUTATED        1      0      4      1      2
  TUBE1 WILD-TYPE     83     85     81     68     45
D371V5, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TUBE1 MUTATED        2      1      1      4
  TUBE1 WILD-TYPE     93     73    120     76
D371V6, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TUBE1 MUTATED        2      2      2      1      1      1
  TUBE1 WILD-TYPE     50     62     70    103     39     58
D371V7, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TUBE1 MUTATED        8      0      1
  TUBE1 WILD-TYPE    209     75     98
D371V8, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TUBE1 MUTATED        4      2      1
  TUBE1 WILD-TYPE    117    106     71
D371V9, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             2             106
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TUBE1 MUTATED        4      0      0      1      2
  TUBE1 WILD-TYPE     84     66     45     54     45
D371V10, multiclass
        clus
vv       TUBE1 MUTATED TUBE1 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(372) Variable = IPO11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO11 MUTATED        2      8      0      0
  IPO11 WILD-TYPE    202    129     47      3
D372V1, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             8             129
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO11 MUTATED        1      5      2      1      0
  IPO11 WILD-TYPE     38     91     42     87     80
D372V2, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO11 MUTATED        0      7      1      0      1
  IPO11 WILD-TYPE     26     72     72     82     57
D372V3, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             7              72
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO11 MUTATED        3      5      1      0
  IPO11 WILD-TYPE    124     46     70     69
D372V4, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             5              46
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO11 MUTATED        1      3      5      0      1
  IPO11 WILD-TYPE     83     82     80     69     46
D372V5, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IPO11 MUTATED        3      2      2      3
  IPO11 WILD-TYPE     92     72    119     77
D372V6, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IPO11 MUTATED        2      4      2      1      1      1
  IPO11 WILD-TYPE     50     60     70    103     39     58
D372V7, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             4              60
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IPO11 MUTATED        8      1      2
  IPO11 WILD-TYPE    209     74     97
D372V8, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IPO11 MUTATED        2      2      4
  IPO11 WILD-TYPE    119    106     68
D372V9, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IPO11 MUTATED        1      1      1      1      4
  IPO11 WILD-TYPE     87     65     44     54     43
D372V10, multiclass
        clus
vv       IPO11 MUTATED IPO11 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(373) Variable = IDH2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        0      3      1      0
  IDH2 WILD-TYPE    204    134     46      3
D373V1, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            3            134
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH2 MUTATED        0      2      1      0      1
  IDH2 WILD-TYPE     39     94     43     88     79
D373V2, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            2             94
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH2 MUTATED        0      2      0      1      0
  IDH2 WILD-TYPE     26     77     73     81     58
D373V3, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            0             73
  CLUS_4            1             81
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        0      1      1      1
  IDH2 WILD-TYPE    127     50     70     68
D373V4, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            1             50
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH2 MUTATED        0      0      2      1      1
  IDH2 WILD-TYPE     84     85     83     68     46
D373V5, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            2             83
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH2 MUTATED        1      0      2      1
  IDH2 WILD-TYPE     94     74    119     79
D373V6, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            0             74
  CLUS_3            2            119
  CLUS_4            1             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IDH2 MUTATED        2      1      1      0      0      0
  IDH2 WILD-TYPE     50     63     71    104     40     59
D373V7, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            1             63
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        3      1      0
  IDH2 WILD-TYPE    214     74     99
D373V8, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            3            214
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH2 MUTATED        1      0      2
  IDH2 WILD-TYPE    120    108     70
D373V9, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            1            120
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IDH2 MUTATED        0      0      2      0      1
  IDH2 WILD-TYPE     88     66     43     55     46
D373V10, multiclass
        clus
vv       IDH2 MUTATED IDH2 WILD-TYPE
  CLUS_1            0             88
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(374) Variable = ZCCHC11 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC11 MUTATED        1     15      2      0
  ZCCHC11 WILD-TYPE    203    122     45      3
D374V1, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               1               203
  CLUS_2              15               122
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC11 MUTATED        2      9      1      1      0
  ZCCHC11 WILD-TYPE     37     87     43     87     80
D374V2, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               2                37
  CLUS_2               9                87
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC11 MUTATED        0      5      3      3      4
  ZCCHC11 WILD-TYPE     26     74     70     79     54
D374V3, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               5                74
  CLUS_3               3                70
  CLUS_4               3                79
  CLUS_5               4                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC11 MUTATED        2      6      3      4
  ZCCHC11 WILD-TYPE    125     45     68     65
D374V4, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               6                45
  CLUS_3               3                68
  CLUS_4               4                65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC11 MUTATED        0      4      9      2      2
  ZCCHC11 WILD-TYPE     84     81     76     67     45
D374V5, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               4                81
  CLUS_3               9                76
  CLUS_4               2                67
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC11 MUTATED        3      3      1     10
  ZCCHC11 WILD-TYPE     92     71    120     70
D374V6, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               3                71
  CLUS_3               1               120
  CLUS_4              10                70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZCCHC11 MUTATED        5      4      4      4      1      0
  ZCCHC11 WILD-TYPE     47     60     68    100     39     59
D374V7, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               5                47
  CLUS_2               4                60
  CLUS_3               4                68
  CLUS_4               4               100
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZCCHC11 MUTATED       14      2      2
  ZCCHC11 WILD-TYPE    203     73     97
D374V8, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1              14               203
  CLUS_2               2                73
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZCCHC11 MUTATED        7      3      2
  ZCCHC11 WILD-TYPE    114    105     70
D374V9, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               7               114
  CLUS_2               3               105
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC11 MUTATED        8      0      0      1      3
  ZCCHC11 WILD-TYPE     80     66     45     54     44
D374V10, multiclass
        clus
vv       ZCCHC11 MUTATED ZCCHC11 WILD-TYPE
  CLUS_1               8                80
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               1                54
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(375) Variable = SYNCRIP MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNCRIP MUTATED        4      9      2      0
  SYNCRIP WILD-TYPE    200    128     45      3
D375V1, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               4               200
  CLUS_2               9               128
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNCRIP MUTATED        2      6      2      3      0
  SYNCRIP WILD-TYPE     37     90     42     85     80
D375V2, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               2                37
  CLUS_2               6                90
  CLUS_3               2                42
  CLUS_4               3                85
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNCRIP MUTATED        1      6      4      1      2
  SYNCRIP WILD-TYPE     25     73     69     81     56
D375V3, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               1                25
  CLUS_2               6                73
  CLUS_3               4                69
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNCRIP MUTATED        5      7      2      0
  SYNCRIP WILD-TYPE    122     44     69     69
D375V4, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               5               122
  CLUS_2               7                44
  CLUS_3               2                69
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNCRIP MUTATED        4      0      7      1      1
  SYNCRIP WILD-TYPE     80     85     78     68     46
D375V5, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               4                80
  CLUS_2               0                85
  CLUS_3               7                78
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNCRIP MUTATED        3      1      4      5
  SYNCRIP WILD-TYPE     92     73    117     75
D375V6, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               3                92
  CLUS_2               1                73
  CLUS_3               4               117
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYNCRIP MUTATED        4      3      3      1      0      4
  SYNCRIP WILD-TYPE     48     61     69    103     40     55
D375V7, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               4                48
  CLUS_2               3                61
  CLUS_3               3                69
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               4                55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SYNCRIP MUTATED        8      2      5
  SYNCRIP WILD-TYPE    209     73     94
D375V8, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               8               209
  CLUS_2               2                73
  CLUS_3               5                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SYNCRIP MUTATED        6      2      4
  SYNCRIP WILD-TYPE    115    106     68
D375V9, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               6               115
  CLUS_2               2               106
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNCRIP MUTATED        2      2      2      3      3
  SYNCRIP WILD-TYPE     86     64     43     52     44
D375V10, multiclass
        clus
vv       SYNCRIP MUTATED SYNCRIP WILD-TYPE
  CLUS_1               2                86
  CLUS_2               2                64
  CLUS_3               2                43
  CLUS_4               3                52
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(376) Variable = BAT3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAT3 MUTATED        4      9      0      0
  BAT3 WILD-TYPE    200    128     47      3
D376V1, multiclass
        clus
vv       BAT3 MUTATED BAT3 WILD-TYPE
  CLUS_1            4            200
  CLUS_2            9            128
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAT3 MUTATED        1      8      0      2      1
  BAT3 WILD-TYPE     38     88     44     86     79
D376V2, multiclass
        clus
vv       BAT3 MUTATED BAT3 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            8             88
  CLUS_3            0             44
  CLUS_4            2             86
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAT3 MUTATED        2      0      4      2      2
  BAT3 WILD-TYPE     24     79     69     80     56
D376V3, multiclass
        clus
vv       BAT3 MUTATED BAT3 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            0             79
  CLUS_3            4             69
  CLUS_4            2             80
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAT3 MUTATED        3      5      0      2
  BAT3 WILD-TYPE    124     46     71     67
D376V4, multiclass
        clus
vv       BAT3 MUTATED BAT3 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            5             46
  CLUS_3            0             71
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAT3 MUTATED        1      2      6      3      1
  BAT3 WILD-TYPE     83     83     79     66     46
D376V5, multiclass
        clus
vv       BAT3 MUTATED BAT3 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            2             83
  CLUS_3            6             79
  CLUS_4            3             66
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAT3 MUTATED        5      2      2      4
  BAT3 WILD-TYPE     90     72    119     76
D376V6, multiclass
        clus
vv       BAT3 MUTATED BAT3 WILD-TYPE
  CLUS_1            5             90
  CLUS_2            2             72
  CLUS_3            2            119
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BAT3 MUTATED        3      3      2      3      1      1
  BAT3 WILD-TYPE     49     61     70    101     39     58
D376V7, multiclass
        clus
vv       BAT3 MUTATED BAT3 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            3             61
  CLUS_3            2             70
  CLUS_4            3            101
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAT3 MUTATED        8      1      4
  BAT3 WILD-TYPE    209     74     95
D376V8, multiclass
        clus
vv       BAT3 MUTATED BAT3 WILD-TYPE
  CLUS_1            8            209
  CLUS_2            1             74
  CLUS_3            4             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAT3 MUTATED        4      3      4
  BAT3 WILD-TYPE    117    105     68
D376V9, multiclass
        clus
vv       BAT3 MUTATED BAT3 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            3            105
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAT3 MUTATED        3      1      3      2      2
  BAT3 WILD-TYPE     85     65     42     53     45
D376V10, multiclass
        clus
vv       BAT3 MUTATED BAT3 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            3             42
  CLUS_4            2             53
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(377) Variable = PRPF40B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF40B MUTATED        2     14      0      0
  PRPF40B WILD-TYPE    202    123     47      3
D377V1, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               2               202
  CLUS_2              14               123
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRPF40B MUTATED        2      8      2      1      0
  PRPF40B WILD-TYPE     37     88     42     87     80
D377V2, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               2                37
  CLUS_2               8                88
  CLUS_3               2                42
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRPF40B MUTATED        0      5      7      1      2
  PRPF40B WILD-TYPE     26     74     66     81     56
D377V3, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               0                26
  CLUS_2               5                74
  CLUS_3               7                66
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF40B MUTATED        3      7      4      1
  PRPF40B WILD-TYPE    124     44     67     68
D377V4, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               3               124
  CLUS_2               7                44
  CLUS_3               4                67
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRPF40B MUTATED        0      3     10      1      3
  PRPF40B WILD-TYPE     84     82     75     68     44
D377V5, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               0                84
  CLUS_2               3                82
  CLUS_3              10                75
  CLUS_4               1                68
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF40B MUTATED        4      5      0      8
  PRPF40B WILD-TYPE     91     69    121     72
D377V6, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               4                91
  CLUS_2               5                69
  CLUS_3               0               121
  CLUS_4               8                72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRPF40B MUTATED        5      7      2      3      0      0
  PRPF40B WILD-TYPE     47     57     70    101     40     59
D377V7, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               5                47
  CLUS_2               7                57
  CLUS_3               2                70
  CLUS_4               3               101
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRPF40B MUTATED       12      3      2
  PRPF40B WILD-TYPE    205     72     97
D377V8, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1              12               205
  CLUS_2               3                72
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRPF40B MUTATED        3      2      6
  PRPF40B WILD-TYPE    118    106     66
D377V9, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               3               118
  CLUS_2               2               106
  CLUS_3               6                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRPF40B MUTATED        1      2      4      0      4
  PRPF40B WILD-TYPE     87     64     41     55     43
D377V10, multiclass
        clus
vv       PRPF40B MUTATED PRPF40B WILD-TYPE
  CLUS_1               1                87
  CLUS_2               2                64
  CLUS_3               4                41
  CLUS_4               0                55
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(378) Variable = OXNAD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXNAD1 MUTATED        1      4      1      0
  OXNAD1 WILD-TYPE    203    133     46      3
D378V1, multiclass
        clus
vv       OXNAD1 MUTATED OXNAD1 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              4              133
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OXNAD1 MUTATED        0      5      0      0      1
  OXNAD1 WILD-TYPE     39     91     44     88     79
D378V2, multiclass
        clus
vv       OXNAD1 MUTATED OXNAD1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OXNAD1 MUTATED        1      0      1      1      1
  OXNAD1 WILD-TYPE     25     79     72     81     57
D378V3, multiclass
        clus
vv       OXNAD1 MUTATED OXNAD1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               79
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXNAD1 MUTATED        1      2      0      1
  OXNAD1 WILD-TYPE    126     49     71     68
D378V4, multiclass
        clus
vv       OXNAD1 MUTATED OXNAD1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OXNAD1 MUTATED        0      1      4      1      0
  OXNAD1 WILD-TYPE     84     84     81     68     47
D378V5, multiclass
        clus
vv       OXNAD1 MUTATED OXNAD1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXNAD1 MUTATED        2      1      0      3
  OXNAD1 WILD-TYPE     93     73    121     77
D378V6, multiclass
        clus
vv       OXNAD1 MUTATED OXNAD1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OXNAD1 MUTATED        3      0      2      1      0      0
  OXNAD1 WILD-TYPE     49     64     70    103     40     59
D378V7, multiclass
        clus
vv       OXNAD1 MUTATED OXNAD1 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              0               64
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OXNAD1 MUTATED        5      1      0
  OXNAD1 WILD-TYPE    212     74     99
D378V8, multiclass
        clus
vv       OXNAD1 MUTATED OXNAD1 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OXNAD1 MUTATED        3      1      1
  OXNAD1 WILD-TYPE    118    107     71
D378V9, multiclass
        clus
vv       OXNAD1 MUTATED OXNAD1 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              1              107
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OXNAD1 MUTATED        0      1      0      0      4
  OXNAD1 WILD-TYPE     88     65     45     55     43
D378V10, multiclass
        clus
vv       OXNAD1 MUTATED OXNAD1 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              1               65
  CLUS_3              0               45
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(379) Variable = YLPM1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YLPM1 MUTATED        1     21      2      0
  YLPM1 WILD-TYPE    203    116     45      3
D379V1, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            21             116
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YLPM1 MUTATED        2      9      5      0      3
  YLPM1 WILD-TYPE     37     87     39     88     77
D379V2, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             9              87
  CLUS_3             5              39
  CLUS_4             0              88
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YLPM1 MUTATED        1     10      7      2      2
  YLPM1 WILD-TYPE     25     69     66     80     56
D379V3, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2            10              69
  CLUS_3             7              66
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YLPM1 MUTATED        3     10      7      2
  YLPM1 WILD-TYPE    124     41     64     67
D379V4, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2            10              41
  CLUS_3             7              64
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YLPM1 MUTATED        1      4     10      2      4
  YLPM1 WILD-TYPE     83     81     75     67     43
D379V5, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             4              81
  CLUS_3            10              75
  CLUS_4             2              67
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YLPM1 MUTATED        5      3      3     10
  YLPM1 WILD-TYPE     90     71    118     70
D379V6, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             3              71
  CLUS_3             3             118
  CLUS_4            10              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  YLPM1 MUTATED        6     10      3      3      1      1
  YLPM1 WILD-TYPE     46     54     69    101     39     58
D379V7, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             6              46
  CLUS_2            10              54
  CLUS_3             3              69
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YLPM1 MUTATED       19      3      2
  YLPM1 WILD-TYPE    198     72     97
D379V8, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1            19             198
  CLUS_2             3              72
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YLPM1 MUTATED        6      3      8
  YLPM1 WILD-TYPE    115    105     64
D379V9, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             3             105
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YLPM1 MUTATED        5      0      5      1      6
  YLPM1 WILD-TYPE     83     66     40     54     41
D379V10, multiclass
        clus
vv       YLPM1 MUTATED YLPM1 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             0              66
  CLUS_3             5              40
  CLUS_4             1              54
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(380) Variable = PLEKHA5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA5 MUTATED        2     15      2      0
  PLEKHA5 WILD-TYPE    202    122     45      3
D380V1, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               2               202
  CLUS_2              15               122
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHA5 MUTATED        2     10      2      0      1
  PLEKHA5 WILD-TYPE     37     86     42     88     79
D380V2, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               2                37
  CLUS_2              10                86
  CLUS_3               2                42
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHA5 MUTATED        1      8      4      1      3
  PLEKHA5 WILD-TYPE     25     71     69     81     55
D380V3, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               8                71
  CLUS_3               4                69
  CLUS_4               1                81
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA5 MUTATED        3      7      5      2
  PLEKHA5 WILD-TYPE    124     44     66     67
D380V4, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               7                44
  CLUS_3               5                66
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHA5 MUTATED        0      2     10      1      5
  PLEKHA5 WILD-TYPE     84     83     75     68     42
D380V5, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3              10                75
  CLUS_4               1                68
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHA5 MUTATED        4      3      2      9
  PLEKHA5 WILD-TYPE     91     71    119     71
D380V6, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               3                71
  CLUS_3               2               119
  CLUS_4               9                71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLEKHA5 MUTATED        5      7      4      2      1      0
  PLEKHA5 WILD-TYPE     47     57     68    102     39     59
D380V7, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               5                47
  CLUS_2               7                57
  CLUS_3               4                68
  CLUS_4               2               102
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA5 MUTATED       17      2      0
  PLEKHA5 WILD-TYPE    200     73     99
D380V8, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1              17               200
  CLUS_2               2                73
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHA5 MUTATED        5      1      7
  PLEKHA5 WILD-TYPE    116    107     65
D380V9, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               5               116
  CLUS_2               1               107
  CLUS_3               7                65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHA5 MUTATED        5      0      1      0      7
  PLEKHA5 WILD-TYPE     83     66     44     55     40
D380V10, multiclass
        clus
vv       PLEKHA5 MUTATED PLEKHA5 WILD-TYPE
  CLUS_1               5                83
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               7                40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(381) Variable = TM7SF4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM7SF4 MUTATED        5     12      2      0
  TM7SF4 WILD-TYPE    199    125     45      3
D381V1, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              5              199
  CLUS_2             12              125
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TM7SF4 MUTATED        3     11      1      1      1
  TM7SF4 WILD-TYPE     36     85     43     87     79
D381V2, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              3               36
  CLUS_2             11               85
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TM7SF4 MUTATED        0      4      8      3      3
  TM7SF4 WILD-TYPE     26     75     65     79     55
D381V3, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              8               65
  CLUS_4              3               79
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM7SF4 MUTATED        4      9      3      2
  TM7SF4 WILD-TYPE    123     42     68     67
D381V4, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              9               42
  CLUS_3              3               68
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TM7SF4 MUTATED        2      2      7      3      5
  TM7SF4 WILD-TYPE     82     83     78     66     42
D381V5, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              2               83
  CLUS_3              7               78
  CLUS_4              3               66
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM7SF4 MUTATED        5      2      5      7
  TM7SF4 WILD-TYPE     90     72    116     73
D381V6, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              5               90
  CLUS_2              2               72
  CLUS_3              5              116
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TM7SF4 MUTATED        3      6      4      2      2      2
  TM7SF4 WILD-TYPE     49     58     68    102     38     57
D381V7, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              6               58
  CLUS_3              4               68
  CLUS_4              2              102
  CLUS_5              2               38
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM7SF4 MUTATED       15      2      2
  TM7SF4 WILD-TYPE    202     73     97
D381V8, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1             15              202
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM7SF4 MUTATED       10      3      4
  TM7SF4 WILD-TYPE    111    105     68
D381V9, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1             10              111
  CLUS_2              3              105
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TM7SF4 MUTATED        5      1      2      2      7
  TM7SF4 WILD-TYPE     83     65     43     53     40
D381V10, multiclass
        clus
vv       TM7SF4 MUTATED TM7SF4 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              2               53
  CLUS_5              7               40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(382) Variable = CTNNB1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        4     16      4      0
  CTNNB1 WILD-TYPE    200    121     43      3
D382V1, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              4              200
  CLUS_2             16              121
  CLUS_3              4               43
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNB1 MUTATED        2      7      7      2      4
  CTNNB1 WILD-TYPE     37     89     37     86     76
D382V2, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              7               89
  CLUS_3              7               37
  CLUS_4              2               86
  CLUS_5              4               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNB1 MUTATED        2      7      4      4      4
  CTNNB1 WILD-TYPE     24     72     69     78     54
D382V3, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              7               72
  CLUS_3              4               69
  CLUS_4              4               78
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        3      9      5      4
  CTNNB1 WILD-TYPE    124     42     66     65
D382V4, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              9               42
  CLUS_3              5               66
  CLUS_4              4               65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNB1 MUTATED        3      2     14      0      3
  CTNNB1 WILD-TYPE     81     83     71     69     44
D382V5, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              3               81
  CLUS_2              2               83
  CLUS_3             14               71
  CLUS_4              0               69
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNB1 MUTATED        2      3     10      7
  CTNNB1 WILD-TYPE     93     71    111     73
D382V6, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              3               71
  CLUS_3             10              111
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTNNB1 MUTATED        3      7      8      3      1      2
  CTNNB1 WILD-TYPE     49     57     64    101     39     57
D382V7, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              7               57
  CLUS_3              8               64
  CLUS_4              3              101
  CLUS_5              1               39
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED       16      5      3
  CTNNB1 WILD-TYPE    201     70     96
D382V8, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1             16              201
  CLUS_2              5               70
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNB1 MUTATED        9      2      7
  CTNNB1 WILD-TYPE    112    106     65
D382V9, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              9              112
  CLUS_2              2              106
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNB1 MUTATED        4      3      5      1      5
  CTNNB1 WILD-TYPE     84     63     40     54     42
D382V10, multiclass
        clus
vv       CTNNB1 MUTATED CTNNB1 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              3               63
  CLUS_3              5               40
  CLUS_4              1               54
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(383) Variable = SNAPC2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC2 MUTATED        2      7      0      0
  SNAPC2 WILD-TYPE    202    130     47      3
D383V1, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNAPC2 MUTATED        0      7      1      0      1
  SNAPC2 WILD-TYPE     39     89     43     88     79
D383V2, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              7               89
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNAPC2 MUTATED        1      1      5      0      0
  SNAPC2 WILD-TYPE     25     78     68     82     58
D383V3, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              5               68
  CLUS_4              0               82
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC2 MUTATED        1      6      0      0
  SNAPC2 WILD-TYPE    126     45     71     69
D383V4, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              6               45
  CLUS_3              0               71
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNAPC2 MUTATED        0      1      6      1      1
  SNAPC2 WILD-TYPE     84     84     79     68     46
D383V5, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SNAPC2 MUTATED        2      1      1      5
  SNAPC2 WILD-TYPE     93     73    120     75
D383V6, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SNAPC2 MUTATED        3      3      2      1      0      0
  SNAPC2 WILD-TYPE     49     61     70    103     40     59
D383V7, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              3               61
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC2 MUTATED        8      1      0
  SNAPC2 WILD-TYPE    209     74     99
D383V8, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              8              209
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SNAPC2 MUTATED        4      1      3
  SNAPC2 WILD-TYPE    117    107     69
D383V9, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SNAPC2 MUTATED        3      1      2      0      2
  SNAPC2 WILD-TYPE     85     65     43     55     45
D383V10, multiclass
        clus
vv       SNAPC2 MUTATED SNAPC2 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(384) Variable = MAP2K7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K7 MUTATED        8     17      1      0
  MAP2K7 WILD-TYPE    196    120     46      3
D384V1, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              8              196
  CLUS_2             17              120
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP2K7 MUTATED        0     15      0      3      5
  MAP2K7 WILD-TYPE     39     81     44     85     75
D384V2, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              0               39
  CLUS_2             15               81
  CLUS_3              0               44
  CLUS_4              3               85
  CLUS_5              5               75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP2K7 MUTATED        0      8      7      6      1
  MAP2K7 WILD-TYPE     26     71     66     76     57
D384V3, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              8               71
  CLUS_3              7               66
  CLUS_4              6               76
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K7 MUTATED        5      7      6      4
  MAP2K7 WILD-TYPE    122     44     65     65
D384V4, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              5              122
  CLUS_2              7               44
  CLUS_3              6               65
  CLUS_4              4               65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP2K7 MUTATED        2      5     10      2      4
  MAP2K7 WILD-TYPE     82     80     75     67     43
D384V5, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              5               80
  CLUS_3             10               75
  CLUS_4              2               67
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K7 MUTATED        7      5      3      8
  MAP2K7 WILD-TYPE     88     69    118     72
D384V6, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              7               88
  CLUS_2              5               69
  CLUS_3              3              118
  CLUS_4              8               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP2K7 MUTATED        6      8      4      5      3      1
  MAP2K7 WILD-TYPE     46     56     68     99     37     58
D384V7, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              6               46
  CLUS_2              8               56
  CLUS_3              4               68
  CLUS_4              5               99
  CLUS_5              3               37
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K7 MUTATED       20      3      4
  MAP2K7 WILD-TYPE    197     72     95
D384V8, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1             20              197
  CLUS_2              3               72
  CLUS_3              4               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K7 MUTATED        8      8      5
  MAP2K7 WILD-TYPE    113    100     67
D384V9, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              8              113
  CLUS_2              8              100
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP2K7 MUTATED        7      5      4      0      5
  MAP2K7 WILD-TYPE     81     61     41     55     42
D384V10, multiclass
        clus
vv       MAP2K7 MUTATED MAP2K7 WILD-TYPE
  CLUS_1              7               81
  CLUS_2              5               61
  CLUS_3              4               41
  CLUS_4              0               55
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(385) Variable = CETN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CETN3 MUTATED        0      9      0      0
  CETN3 WILD-TYPE    204    128     47      3
D385V1, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             9             128
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CETN3 MUTATED        1      4      1      0      1
  CETN3 WILD-TYPE     38     92     43     88     79
D385V2, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CETN3 MUTATED        1      2      1      1      2
  CETN3 WILD-TYPE     25     77     72     81     56
D385V3, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CETN3 MUTATED        1      4      1      1
  CETN3 WILD-TYPE    126     47     70     68
D385V4, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CETN3 MUTATED        0      2      3      0      3
  CETN3 WILD-TYPE     84     83     82     69     44
D385V5, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             3              82
  CLUS_4             0              69
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CETN3 MUTATED        2      1      1      4
  CETN3 WILD-TYPE     93     73    120     76
D385V6, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CETN3 MUTATED        3      3      1      1      1      0
  CETN3 WILD-TYPE     49     61     71    103     39     59
D385V7, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CETN3 MUTATED        7      1      1
  CETN3 WILD-TYPE    210     74     98
D385V8, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CETN3 MUTATED        3      1      3
  CETN3 WILD-TYPE    118    107     69
D385V9, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CETN3 MUTATED        2      1      1      0      3
  CETN3 WILD-TYPE     86     65     44     55     44
D385V10, multiclass
        clus
vv       CETN3 MUTATED CETN3 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(386) Variable = CUBN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUBN MUTATED       21     31      4      1
  CUBN WILD-TYPE    183    106     43      2
D386V1, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1           21            183
  CLUS_2           31            106
  CLUS_3            4             43
  CLUS_4            1              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUBN MUTATED        4     22      5      9      4
  CUBN WILD-TYPE     35     74     39     79     76
D386V2, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1            4             35
  CLUS_2           22             74
  CLUS_3            5             39
  CLUS_4            9             79
  CLUS_5            4             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUBN MUTATED        4     17     13      8     10
  CUBN WILD-TYPE     22     62     60     74     48
D386V3, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1            4             22
  CLUS_2           17             62
  CLUS_3           13             60
  CLUS_4            8             74
  CLUS_5           10             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUBN MUTATED       19     15      9      9
  CUBN WILD-TYPE    108     36     62     60
D386V4, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1           19            108
  CLUS_2           15             36
  CLUS_3            9             62
  CLUS_4            9             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUBN MUTATED       10      8     20      8      8
  CUBN WILD-TYPE     74     77     65     61     39
D386V5, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1           10             74
  CLUS_2            8             77
  CLUS_3           20             65
  CLUS_4            8             61
  CLUS_5            8             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUBN MUTATED       14      7     16     17
  CUBN WILD-TYPE     81     67    105     63
D386V6, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1           14             81
  CLUS_2            7             67
  CLUS_3           16            105
  CLUS_4           17             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CUBN MUTATED       12     17      9      9      5      6
  CUBN WILD-TYPE     40     47     63     95     35     53
D386V7, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1           12             40
  CLUS_2           17             47
  CLUS_3            9             63
  CLUS_4            9             95
  CLUS_5            5             35
  CLUS_6            6             53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUBN MUTATED       36      9     13
  CUBN WILD-TYPE    181     66     86
D386V8, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1           36            181
  CLUS_2            9             66
  CLUS_3           13             86
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUBN MUTATED       15     12     11
  CUBN WILD-TYPE    106     96     61
D386V9, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1           15            106
  CLUS_2           12             96
  CLUS_3           11             61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUBN MUTATED        9      5      6      5     13
  CUBN WILD-TYPE     79     61     39     50     34
D386V10, multiclass
        clus
vv       CUBN MUTATED CUBN WILD-TYPE
  CLUS_1            9             79
  CLUS_2            5             61
  CLUS_3            6             39
  CLUS_4            5             50
  CLUS_5           13             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(387) Variable = TRMT6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRMT6 MUTATED        1      6      0      0
  TRMT6 WILD-TYPE    203    131     47      3
D387V1, multiclass
        clus
vv       TRMT6 MUTATED TRMT6 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             6             131
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRMT6 MUTATED        0      3      1      1      1
  TRMT6 WILD-TYPE     39     93     43     87     79
D387V2, multiclass
        clus
vv       TRMT6 MUTATED TRMT6 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRMT6 MUTATED        1      3      2      0      1
  TRMT6 WILD-TYPE     25     76     71     82     57
D387V3, multiclass
        clus
vv       TRMT6 MUTATED TRMT6 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRMT6 MUTATED        3      4      0      0
  TRMT6 WILD-TYPE    124     47     71     69
D387V4, multiclass
        clus
vv       TRMT6 MUTATED TRMT6 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             4              47
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRMT6 MUTATED        1      0      4      1      1
  TRMT6 WILD-TYPE     83     85     81     68     46
D387V5, multiclass
        clus
vv       TRMT6 MUTATED TRMT6 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRMT6 MUTATED        2      0      3      2
  TRMT6 WILD-TYPE     93     74    118     78
D387V6, multiclass
        clus
vv       TRMT6 MUTATED TRMT6 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             3             118
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRMT6 MUTATED        3      2      1      1      0      0
  TRMT6 WILD-TYPE     49     62     71    103     40     59
D387V7, multiclass
        clus
vv       TRMT6 MUTATED TRMT6 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRMT6 MUTATED        4      0      3
  TRMT6 WILD-TYPE    213     75     96
D387V8, multiclass
        clus
vv       TRMT6 MUTATED TRMT6 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRMT6 MUTATED        2      0      1
  TRMT6 WILD-TYPE    119    108     71
D387V9, multiclass
        clus
vv       TRMT6 MUTATED TRMT6 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRMT6 MUTATED        0      0      1      0      2
  TRMT6 WILD-TYPE     88     66     44     55     45
D387V10, multiclass
        clus
vv       TRMT6 MUTATED TRMT6 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(388) Variable = ATM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED       12     23      3      0
  ATM WILD-TYPE    192    114     44      3
D388V1, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          12           192
  CLUS_2          23           114
  CLUS_3           3            44
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        6     13      6      1      7
  ATM WILD-TYPE     33     83     38     87     73
D388V2, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           6            33
  CLUS_2          13            83
  CLUS_3           6            38
  CLUS_4           1            87
  CLUS_5           7            73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        3     11      7      4      8
  ATM WILD-TYPE     23     68     66     78     50
D388V3, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           3            23
  CLUS_2          11            68
  CLUS_3           7            66
  CLUS_4           4            78
  CLUS_5           8            50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED        9     10     11      3
  ATM WILD-TYPE    118     41     60     66
D388V4, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           9           118
  CLUS_2          10            41
  CLUS_3          11            60
  CLUS_4           3            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        1     10     15      5      5
  ATM WILD-TYPE     83     75     70     64     42
D388V5, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           1            83
  CLUS_2          10            75
  CLUS_3          15            70
  CLUS_4           5            64
  CLUS_5           5            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATM MUTATED       10      7      5     14
  ATM WILD-TYPE     85     67    116     66
D388V6, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          10            85
  CLUS_2           7            67
  CLUS_3           5           116
  CLUS_4          14            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATM MUTATED        7     13      8      8      2      0
  ATM WILD-TYPE     45     51     64     96     38     59
D388V7, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           7            45
  CLUS_2          13            51
  CLUS_3           8            64
  CLUS_4           8            96
  CLUS_5           2            38
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED       29      7      2
  ATM WILD-TYPE    188     68     97
D388V8, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          29           188
  CLUS_2           7            68
  CLUS_3           2            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  ATM MUTATED       11     10      8
  ATM WILD-TYPE    110     98     64
D388V9, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1          11           110
  CLUS_2          10            98
  CLUS_3           8            64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATM MUTATED        9      6      6      0      8
  ATM WILD-TYPE     79     60     39     55     39
D388V10, multiclass
        clus
vv       ATM MUTATED ATM WILD-TYPE
  CLUS_1           9            79
  CLUS_2           6            60
  CLUS_3           6            39
  CLUS_4           0            55
  CLUS_5           8            39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(389) Variable = PMEPA1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PMEPA1 MUTATED        0      6      0      0
  PMEPA1 WILD-TYPE    204    131     47      3
D389V1, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              6              131
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PMEPA1 MUTATED        0      3      2      0      0
  PMEPA1 WILD-TYPE     39     93     42     88     80
D389V2, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PMEPA1 MUTATED        0      3      1      0      2
  PMEPA1 WILD-TYPE     26     76     72     82     56
D389V3, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PMEPA1 MUTATED        0      3      2      1
  PMEPA1 WILD-TYPE    127     48     69     68
D389V4, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              3               48
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PMEPA1 MUTATED        0      2      3      0      1
  PMEPA1 WILD-TYPE     84     83     82     69     46
D389V5, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PMEPA1 MUTATED        0      2      0      4
  PMEPA1 WILD-TYPE     95     72    121     76
D389V6, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PMEPA1 MUTATED        2      3      1      0      0      0
  PMEPA1 WILD-TYPE     50     61     71    104     40     59
D389V7, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PMEPA1 MUTATED        6      0      0
  PMEPA1 WILD-TYPE    211     75     99
D389V8, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PMEPA1 MUTATED        3      0      2
  PMEPA1 WILD-TYPE    118    108     70
D389V9, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PMEPA1 MUTATED        1      0      1      0      3
  PMEPA1 WILD-TYPE     87     66     44     55     44
D389V10, multiclass
        clus
vv       PMEPA1 MUTATED PMEPA1 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(390) Variable = POP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POP1 MUTATED        5     11      2      0
  POP1 WILD-TYPE    199    126     45      3
D390V1, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            5            199
  CLUS_2           11            126
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POP1 MUTATED        1      7      2      2      2
  POP1 WILD-TYPE     38     89     42     86     78
D390V2, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            7             89
  CLUS_3            2             42
  CLUS_4            2             86
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POP1 MUTATED        3      7      3      2      2
  POP1 WILD-TYPE     23     72     70     80     56
D390V3, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            3             23
  CLUS_2            7             72
  CLUS_3            3             70
  CLUS_4            2             80
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POP1 MUTATED        4      7      4      2
  POP1 WILD-TYPE    123     44     67     67
D390V4, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            4            123
  CLUS_2            7             44
  CLUS_3            4             67
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POP1 MUTATED        3      3     12      1      0
  POP1 WILD-TYPE     81     82     73     68     47
D390V5, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            3             81
  CLUS_2            3             82
  CLUS_3           12             73
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POP1 MUTATED        2      3      3     11
  POP1 WILD-TYPE     93     71    118     69
D390V6, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            3             71
  CLUS_3            3            118
  CLUS_4           11             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POP1 MUTATED        4      5      5      2      0      3
  POP1 WILD-TYPE     48     59     67    102     40     56
D390V7, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            5             59
  CLUS_3            5             67
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            3             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POP1 MUTATED       15      0      4
  POP1 WILD-TYPE    202     75     95
D390V8, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1           15            202
  CLUS_2            0             75
  CLUS_3            4             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POP1 MUTATED        7      2      4
  POP1 WILD-TYPE    114    106     68
D390V9, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            7            114
  CLUS_2            2            106
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POP1 MUTATED        4      0      2      2      5
  POP1 WILD-TYPE     84     66     43     53     42
D390V10, multiclass
        clus
vv       POP1 MUTATED POP1 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            2             53
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(391) Variable = EPHA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        3     21      2      0
  EPHA2 WILD-TYPE    201    116     45      3
D391V1, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            21             116
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA2 MUTATED        2     17      2      1      3
  EPHA2 WILD-TYPE     37     79     42     87     77
D391V2, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            17              79
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA2 MUTATED        3      5      6      0      3
  EPHA2 WILD-TYPE     23     74     67     82     55
D391V3, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             5              74
  CLUS_3             6              67
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED        4      9      4      0
  EPHA2 WILD-TYPE    123     42     67     69
D391V4, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             9              42
  CLUS_3             4              67
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA2 MUTATED        1      3     12      7      4
  EPHA2 WILD-TYPE     83     82     73     62     43
D391V5, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3            12              73
  CLUS_4             7              62
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA2 MUTATED       10      3      3     11
  EPHA2 WILD-TYPE     85     71    118     69
D391V6, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1            10              85
  CLUS_2             3              71
  CLUS_3             3             118
  CLUS_4            11              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHA2 MUTATED        9      6      5      2      4      1
  EPHA2 WILD-TYPE     43     58     67    102     36     58
D391V7, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             9              43
  CLUS_2             6              58
  CLUS_3             5              67
  CLUS_4             2             102
  CLUS_5             4              36
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED       24      1      2
  EPHA2 WILD-TYPE    193     74     97
D391V8, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1            24             193
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA2 MUTATED       12      4      7
  EPHA2 WILD-TYPE    109    104     65
D391V9, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1            12             109
  CLUS_2             4             104
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA2 MUTATED        7      2      3      0     11
  EPHA2 WILD-TYPE     81     64     42     55     36
D391V10, multiclass
        clus
vv       EPHA2 MUTATED EPHA2 WILD-TYPE
  CLUS_1             7              81
  CLUS_2             2              64
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5            11              36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(392) Variable = MPRIP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPRIP MUTATED        0     15      2      0
  MPRIP WILD-TYPE    204    122     45      3
D392V1, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             0             204
  CLUS_2            15             122
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MPRIP MUTATED        0     10      1      0      1
  MPRIP WILD-TYPE     39     86     43     88     79
D392V2, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             0              39
  CLUS_2            10              86
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MPRIP MUTATED        0      4      6      0      6
  MPRIP WILD-TYPE     26     75     67     82     52
D392V3, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             6              67
  CLUS_4             0              82
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPRIP MUTATED        3     11      2      0
  MPRIP WILD-TYPE    124     40     69     69
D392V4, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             3             124
  CLUS_2            11              40
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MPRIP MUTATED        0      2      6      2      5
  MPRIP WILD-TYPE     84     83     79     67     42
D392V5, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             6              79
  CLUS_4             2              67
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MPRIP MUTATED        4      0      0     11
  MPRIP WILD-TYPE     91     74    121     69
D392V6, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             4              91
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4            11              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MPRIP MUTATED        5      7      3      2      0      0
  MPRIP WILD-TYPE     47     57     69    102     40     59
D392V7, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             5              47
  CLUS_2             7              57
  CLUS_3             3              69
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MPRIP MUTATED       15      0      2
  MPRIP WILD-TYPE    202     75     97
D392V8, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1            15             202
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MPRIP MUTATED        5      2      4
  MPRIP WILD-TYPE    116    106     68
D392V9, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             5             116
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MPRIP MUTATED        1      1      2      0      7
  MPRIP WILD-TYPE     87     65     43     55     40
D392V10, multiclass
        clus
vv       MPRIP MUTATED MPRIP WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(393) Variable = LARP1B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP1B MUTATED        2      9      1      0
  LARP1B WILD-TYPE    202    128     46      3
D393V1, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              2              202
  CLUS_2              9              128
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP1B MUTATED        0      8      1      1      0
  LARP1B WILD-TYPE     39     88     43     87     80
D393V2, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              0               39
  CLUS_2              8               88
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP1B MUTATED        0      4      3      0      3
  LARP1B WILD-TYPE     26     75     70     82     55
D393V3, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP1B MUTATED        2      5      2      1
  LARP1B WILD-TYPE    125     46     69     68
D393V4, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              2              125
  CLUS_2              5               46
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP1B MUTATED        1      3      2      2      2
  LARP1B WILD-TYPE     83     82     83     67     45
D393V5, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               82
  CLUS_3              2               83
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LARP1B MUTATED        3      3      1      3
  LARP1B WILD-TYPE     92     71    120     77
D393V6, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              3               92
  CLUS_2              3               71
  CLUS_3              1              120
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LARP1B MUTATED        4      3      1      2      1      1
  LARP1B WILD-TYPE     48     61     71    102     39     58
D393V7, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              4               48
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP1B MUTATED        9      2      1
  LARP1B WILD-TYPE    208     73     98
D393V8, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              9              208
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LARP1B MUTATED        5      2      3
  LARP1B WILD-TYPE    116    106     69
D393V9, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              5              116
  CLUS_2              2              106
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LARP1B MUTATED        3      2      1      0      4
  LARP1B WILD-TYPE     85     64     44     55     43
D393V10, multiclass
        clus
vv       LARP1B MUTATED LARP1B WILD-TYPE
  CLUS_1              3               85
  CLUS_2              2               64
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(394) Variable = EIF5A2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5A2 MUTATED        0      5      0      0
  EIF5A2 WILD-TYPE    204    132     47      3
D394V1, multiclass
        clus
vv       EIF5A2 MUTATED EIF5A2 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF5A2 MUTATED        0      4      1      0      0
  EIF5A2 WILD-TYPE     39     92     43     88     80
D394V2, multiclass
        clus
vv       EIF5A2 MUTATED EIF5A2 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF5A2 MUTATED        1      1      1      0      1
  EIF5A2 WILD-TYPE     25     78     72     82     57
D394V3, multiclass
        clus
vv       EIF5A2 MUTATED EIF5A2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5A2 MUTATED        1      2      1      0
  EIF5A2 WILD-TYPE    126     49     70     69
D394V4, multiclass
        clus
vv       EIF5A2 MUTATED EIF5A2 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF5A2 MUTATED        0      2      1      1      1
  EIF5A2 WILD-TYPE     84     83     84     68     46
D394V5, multiclass
        clus
vv       EIF5A2 MUTATED EIF5A2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              1               84
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF5A2 MUTATED        2      0      0      3
  EIF5A2 WILD-TYPE     93     74    121     77
D394V6, multiclass
        clus
vv       EIF5A2 MUTATED EIF5A2 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0               74
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EIF5A2 MUTATED        1      1      1      1      1      0
  EIF5A2 WILD-TYPE     51     63     71    103     39     59
D394V7, multiclass
        clus
vv       EIF5A2 MUTATED EIF5A2 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              1               63
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF5A2 MUTATED        4      0      1
  EIF5A2 WILD-TYPE    213     75     98
D394V8, multiclass
        clus
vv       EIF5A2 MUTATED EIF5A2 WILD-TYPE
  CLUS_1              4              213
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF5A2 MUTATED        1      2      2
  EIF5A2 WILD-TYPE    120    106     70
D394V9, multiclass
        clus
vv       EIF5A2 MUTATED EIF5A2 WILD-TYPE
  CLUS_1              1              120
  CLUS_2              2              106
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF5A2 MUTATED        2      0      1      0      2
  EIF5A2 WILD-TYPE     86     66     44     55     45
D394V10, multiclass
        clus
vv       EIF5A2 MUTATED EIF5A2 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(395) Variable = RING1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RING1 MUTATED        1      5      2      0
  RING1 WILD-TYPE    203    132     45      3
D395V1, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             5             132
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RING1 MUTATED        1      3      0      0      2
  RING1 WILD-TYPE     38     93     44     88     78
D395V2, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RING1 MUTATED        1      2      4      1      0
  RING1 WILD-TYPE     25     77     69     81     58
D395V3, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RING1 MUTATED        3      2      2      1
  RING1 WILD-TYPE    124     49     69     68
D395V4, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             2              49
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RING1 MUTATED        0      2      4      1      0
  RING1 WILD-TYPE     84     83     81     68     47
D395V5, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RING1 MUTATED        2      2      1      2
  RING1 WILD-TYPE     93     72    120     78
D395V6, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RING1 MUTATED        1      5      2      0      0      0
  RING1 WILD-TYPE     51     59     70    104     40     59
D395V7, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             5              59
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RING1 MUTATED        7      0      1
  RING1 WILD-TYPE    210     75     98
D395V8, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RING1 MUTATED        1      0      4
  RING1 WILD-TYPE    120    108     68
D395V9, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RING1 MUTATED        2      0      3      0      0
  RING1 WILD-TYPE     86     66     42     55     47
D395V10, multiclass
        clus
vv       RING1 MUTATED RING1 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(396) Variable = FAM83E MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM83E MUTATED        1      9      2      0
  FAM83E WILD-TYPE    203    128     45      3
D396V1, multiclass
        clus
vv       FAM83E MUTATED FAM83E WILD-TYPE
  CLUS_1              1              203
  CLUS_2              9              128
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM83E MUTATED        1      8      1      0      1
  FAM83E WILD-TYPE     38     88     43     88     79
D396V2, multiclass
        clus
vv       FAM83E MUTATED FAM83E WILD-TYPE
  CLUS_1              1               38
  CLUS_2              8               88
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM83E MUTATED        1      3      3      1      2
  FAM83E WILD-TYPE     25     76     70     81     56
D396V3, multiclass
        clus
vv       FAM83E MUTATED FAM83E WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM83E MUTATED        1      7      1      1
  FAM83E WILD-TYPE    126     44     70     68
D396V4, multiclass
        clus
vv       FAM83E MUTATED FAM83E WILD-TYPE
  CLUS_1              1              126
  CLUS_2              7               44
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM83E MUTATED        0      1      8      1      2
  FAM83E WILD-TYPE     84     84     77     68     45
D396V5, multiclass
        clus
vv       FAM83E MUTATED FAM83E WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              8               77
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM83E MUTATED        3      1      1      7
  FAM83E WILD-TYPE     92     73    120     73
D396V6, multiclass
        clus
vv       FAM83E MUTATED FAM83E WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM83E MUTATED        4      4      2      0      3      0
  FAM83E WILD-TYPE     48     60     70    104     37     59
D396V7, multiclass
        clus
vv       FAM83E MUTATED FAM83E WILD-TYPE
  CLUS_1              4               48
  CLUS_2              4               60
  CLUS_3              2               70
  CLUS_4              0              104
  CLUS_5              3               37
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM83E MUTATED       11      1      1
  FAM83E WILD-TYPE    206     74     98
D396V8, multiclass
        clus
vv       FAM83E MUTATED FAM83E WILD-TYPE
  CLUS_1             11              206
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM83E MUTATED        4      1      5
  FAM83E WILD-TYPE    117    107     67
D396V9, multiclass
        clus
vv       FAM83E MUTATED FAM83E WILD-TYPE
  CLUS_1              4              117
  CLUS_2              1              107
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM83E MUTATED        2      0      2      0      6
  FAM83E WILD-TYPE     86     66     43     55     41
D396V10, multiclass
        clus
vv       FAM83E MUTATED FAM83E WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(397) Variable = CLDN6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN6 MUTATED        0      9      0      0
  CLDN6 WILD-TYPE    204    128     47      3
D397V1, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             9             128
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLDN6 MUTATED        1      6      0      0      0
  CLDN6 WILD-TYPE     38     90     44     88     80
D397V2, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLDN6 MUTATED        1      1      2      0      3
  CLDN6 WILD-TYPE     25     78     71     82     55
D397V3, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN6 MUTATED        2      4      0      1
  CLDN6 WILD-TYPE    125     47     71     68
D397V4, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLDN6 MUTATED        1      3      2      0      3
  CLDN6 WILD-TYPE     83     82     83     69     44
D397V5, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             2              83
  CLUS_4             0              69
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN6 MUTATED        2      1      0      6
  CLDN6 WILD-TYPE     93     73    121     74
D397V6, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLDN6 MUTATED        4      1      1      0      2      1
  CLDN6 WILD-TYPE     48     63     71    104     38     58
D397V7, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             1              63
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLDN6 MUTATED        6      0      3
  CLDN6 WILD-TYPE    211     75     96
D397V8, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLDN6 MUTATED        6      1      0
  CLDN6 WILD-TYPE    115    107     72
D397V9, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLDN6 MUTATED        4      0      0      0      3
  CLDN6 WILD-TYPE     84     66     45     55     44
D397V10, multiclass
        clus
vv       CLDN6 MUTATED CLDN6 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(398) Variable = SULF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULF1 MUTATED        4     14      5      1
  SULF1 WILD-TYPE    200    123     42      2
D398V1, multiclass
        clus
vv       SULF1 MUTATED SULF1 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            14             123
  CLUS_3             5              42
  CLUS_4             1               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SULF1 MUTATED        4      8      3      2      4
  SULF1 WILD-TYPE     35     88     41     86     76
D398V2, multiclass
        clus
vv       SULF1 MUTATED SULF1 WILD-TYPE
  CLUS_1             4              35
  CLUS_2             8              88
  CLUS_3             3              41
  CLUS_4             2              86
  CLUS_5             4              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SULF1 MUTATED        3      8      4      2      2
  SULF1 WILD-TYPE     23     71     69     80     56
D398V3, multiclass
        clus
vv       SULF1 MUTATED SULF1 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             8              71
  CLUS_3             4              69
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULF1 MUTATED        6      4      6      3
  SULF1 WILD-TYPE    121     47     65     66
D398V4, multiclass
        clus
vv       SULF1 MUTATED SULF1 WILD-TYPE
  CLUS_1             6             121
  CLUS_2             4              47
  CLUS_3             6              65
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SULF1 MUTATED        0      4      9      4      5
  SULF1 WILD-TYPE     84     81     76     65     42
D398V5, multiclass
        clus
vv       SULF1 MUTATED SULF1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             4              81
  CLUS_3             9              76
  CLUS_4             4              65
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SULF1 MUTATED        7      7      1      7
  SULF1 WILD-TYPE     88     67    120     73
D398V6, multiclass
        clus
vv       SULF1 MUTATED SULF1 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             7              67
  CLUS_3             1             120
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SULF1 MUTATED        4     10      2      5      3      0
  SULF1 WILD-TYPE     48     54     70     99     37     59
D398V7, multiclass
        clus
vv       SULF1 MUTATED SULF1 WILD-TYPE
  CLUS_1             4              48
  CLUS_2            10              54
  CLUS_3             2              70
  CLUS_4             5              99
  CLUS_5             3              37
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SULF1 MUTATED       20      2      2
  SULF1 WILD-TYPE    197     73     97
D398V8, multiclass
        clus
vv       SULF1 MUTATED SULF1 WILD-TYPE
  CLUS_1            20             197
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SULF1 MUTATED        6      5      8
  SULF1 WILD-TYPE    115    103     64
D398V9, multiclass
        clus
vv       SULF1 MUTATED SULF1 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             5             103
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SULF1 MUTATED        7      2      6      0      4
  SULF1 WILD-TYPE     81     64     39     55     43
D398V10, multiclass
        clus
vv       SULF1 MUTATED SULF1 WILD-TYPE
  CLUS_1             7              81
  CLUS_2             2              64
  CLUS_3             6              39
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(399) Variable = PCGF3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCGF3 MUTATED        0      6      1      0
  PCGF3 WILD-TYPE    204    131     46      3
D399V1, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             6             131
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCGF3 MUTATED        0      7      0      0      0
  PCGF3 WILD-TYPE     39     89     44     88     80
D399V2, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              89
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCGF3 MUTATED        0      1      3      0      2
  PCGF3 WILD-TYPE     26     78     70     82     56
D399V3, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCGF3 MUTATED        0      5      1      0
  PCGF3 WILD-TYPE    127     46     70     69
D399V4, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             5              46
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCGF3 MUTATED        0      0      3      1      3
  PCGF3 WILD-TYPE     84     85     82     68     44
D399V5, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCGF3 MUTATED        1      0      0      6
  PCGF3 WILD-TYPE     94     74    121     74
D399V6, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCGF3 MUTATED        5      0      2      0      0      0
  PCGF3 WILD-TYPE     47     64     70    104     40     59
D399V7, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             0              64
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCGF3 MUTATED        7      0      0
  PCGF3 WILD-TYPE    210     75     99
D399V8, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCGF3 MUTATED        3      1      3
  PCGF3 WILD-TYPE    118    107     69
D399V9, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCGF3 MUTATED        3      0      0      0      4
  PCGF3 WILD-TYPE     85     66     45     55     43
D399V10, multiclass
        clus
vv       PCGF3 MUTATED PCGF3 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(400) Variable = SF3B2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B2 MUTATED        2     13      1      0
  SF3B2 WILD-TYPE    202    124     46      3
D400V1, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            13             124
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF3B2 MUTATED        2      7      1      1      2
  SF3B2 WILD-TYPE     37     89     43     87     78
D400V2, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             7              89
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF3B2 MUTATED        3      5      2      1      2
  SF3B2 WILD-TYPE     23     74     71     81     56
D400V3, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             5              74
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B2 MUTATED        4      6      2      1
  SF3B2 WILD-TYPE    123     45     69     68
D400V4, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             6              45
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF3B2 MUTATED        0      4      8      2      0
  SF3B2 WILD-TYPE     84     81     77     67     47
D400V5, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             4              81
  CLUS_3             8              77
  CLUS_4             2              67
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SF3B2 MUTATED        3      3      2      6
  SF3B2 WILD-TYPE     92     71    119     74
D400V6, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             3              71
  CLUS_3             2             119
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SF3B2 MUTATED        4      6      2      3      0      1
  SF3B2 WILD-TYPE     48     58     70    101     40     58
D400V7, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             6              58
  CLUS_3             2              70
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B2 MUTATED       13      2      1
  SF3B2 WILD-TYPE    204     73     98
D400V8, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1            13             204
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SF3B2 MUTATED        3      2      7
  SF3B2 WILD-TYPE    118    106     65
D400V9, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SF3B2 MUTATED        3      1      4      0      4
  SF3B2 WILD-TYPE     85     65     41     55     43
D400V10, multiclass
        clus
vv       SF3B2 MUTATED SF3B2 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(401) Variable = C19ORF70 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF70 MUTATED        2      3      1      0
  C19ORF70 WILD-TYPE    202    134     46      3
D401V1, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                2                202
  CLUS_2                3                134
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF70 MUTATED        0      4      1      0      0
  C19ORF70 WILD-TYPE     39     92     43     88     80
D401V2, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                4                 92
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF70 MUTATED        0      4      0      0      1
  C19ORF70 WILD-TYPE     26     75     73     82     57
D401V3, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                4                 75
  CLUS_3                0                 73
  CLUS_4                0                 82
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF70 MUTATED        1      3      1      0
  C19ORF70 WILD-TYPE    126     48     70     69
D401V4, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                1                126
  CLUS_2                3                 48
  CLUS_3                1                 70
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF70 MUTATED        0      1      3      1      0
  C19ORF70 WILD-TYPE     84     84     82     68     47
D401V5, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                3                 82
  CLUS_4                1                 68
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF70 MUTATED        2      0      0      3
  C19ORF70 WILD-TYPE     93     74    121     77
D401V6, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                0                 74
  CLUS_3                0                121
  CLUS_4                3                 77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C19ORF70 MUTATED        1      1      3      1      0      0
  C19ORF70 WILD-TYPE     51     63     69    103     40     59
D401V7, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                1                 63
  CLUS_3                3                 69
  CLUS_4                1                103
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF70 MUTATED        6      0      0
  C19ORF70 WILD-TYPE    211     75     99
D401V8, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                6                211
  CLUS_2                0                 75
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF70 MUTATED        2      1      2
  C19ORF70 WILD-TYPE    119    107     70
D401V9, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                2                119
  CLUS_2                1                107
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF70 MUTATED        1      0      0      0      4
  C19ORF70 WILD-TYPE     87     66     45     55     43
D401V10, multiclass
        clus
vv       C19ORF70 MUTATED C19ORF70 WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                0                 66
  CLUS_3                0                 45
  CLUS_4                0                 55
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(402) Variable = RNASEH2B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASEH2B MUTATED        1      2      1      0
  RNASEH2B WILD-TYPE    203    135     46      3
D402V1, multiclass
        clus
vv       RNASEH2B MUTATED RNASEH2B WILD-TYPE
  CLUS_1                1                203
  CLUS_2                2                135
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNASEH2B MUTATED        1      2      1      0      0
  RNASEH2B WILD-TYPE     38     94     43     88     80
D402V2, multiclass
        clus
vv       RNASEH2B MUTATED RNASEH2B WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                2                 94
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNASEH2B MUTATED        0      1      2      0      1
  RNASEH2B WILD-TYPE     26     78     71     82     57
D402V3, multiclass
        clus
vv       RNASEH2B MUTATED RNASEH2B WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                1                 78
  CLUS_3                2                 71
  CLUS_4                0                 82
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASEH2B MUTATED        1      1      1      1
  RNASEH2B WILD-TYPE    126     50     70     68
D402V4, multiclass
        clus
vv       RNASEH2B MUTATED RNASEH2B WILD-TYPE
  CLUS_1                1                126
  CLUS_2                1                 50
  CLUS_3                1                 70
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNASEH2B MUTATED        0      2      1      1      0
  RNASEH2B WILD-TYPE     84     83     84     68     47
D402V5, multiclass
        clus
vv       RNASEH2B MUTATED RNASEH2B WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                2                 83
  CLUS_3                1                 84
  CLUS_4                1                 68
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASEH2B MUTATED        1      1      0      2
  RNASEH2B WILD-TYPE     94     73    121     78
D402V6, multiclass
        clus
vv       RNASEH2B MUTATED RNASEH2B WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                1                 73
  CLUS_3                0                121
  CLUS_4                2                 78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNASEH2B MUTATED        1      0      1      2      0      0
  RNASEH2B WILD-TYPE     51     64     71    102     40     59
D402V7, multiclass
        clus
vv       RNASEH2B MUTATED RNASEH2B WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                0                 64
  CLUS_3                1                 71
  CLUS_4                2                102
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  RNASEH2B MUTATED        2      1      1
  RNASEH2B WILD-TYPE    215     74     98
D402V8, multiclass
        clus
vv       RNASEH2B MUTATED RNASEH2B WILD-TYPE
  CLUS_1                2                215
  CLUS_2                1                 74
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  RNASEH2B MUTATED        1      2      0
  RNASEH2B WILD-TYPE    120    106     72
D402V9, multiclass
        clus
vv       RNASEH2B MUTATED RNASEH2B WILD-TYPE
  CLUS_1                1                120
  CLUS_2                2                106
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNASEH2B MUTATED        2      1      0      0      0
  RNASEH2B WILD-TYPE     86     65     45     55     47
D402V10, multiclass
        clus
vv       RNASEH2B MUTATED RNASEH2B WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                1                 65
  CLUS_3                0                 45
  CLUS_4                0                 55
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(403) Variable = GPR161 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR161 MUTATED        2      9      1      0
  GPR161 WILD-TYPE    202    128     46      3
D403V1, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              9              128
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR161 MUTATED        1      5      1      0      1
  GPR161 WILD-TYPE     38     91     43     88     79
D403V2, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR161 MUTATED        1      5      1      0      2
  GPR161 WILD-TYPE     25     74     72     82     56
D403V3, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              5               74
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR161 MUTATED        3      4      2      0
  GPR161 WILD-TYPE    124     47     69     69
D403V4, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              4               47
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR161 MUTATED        1      1      4      4      0
  GPR161 WILD-TYPE     83     84     81     65     47
D403V5, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              4               81
  CLUS_4              4               65
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR161 MUTATED        7      1      1      1
  GPR161 WILD-TYPE     88     73    120     79
D403V6, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              7               88
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR161 MUTATED        3      5      1      2      1      0
  GPR161 WILD-TYPE     49     59     71    102     39     59
D403V7, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              5               59
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR161 MUTATED        9      2      1
  GPR161 WILD-TYPE    208     73     98
D403V8, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR161 MUTATED        4      2      2
  GPR161 WILD-TYPE    117    106     70
D403V9, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              2              106
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR161 MUTATED        2      2      1      0      3
  GPR161 WILD-TYPE     86     64     44     55     44
D403V10, multiclass
        clus
vv       GPR161 MUTATED GPR161 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              2               64
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(404) Variable = RRS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRS1 MUTATED        1      5      1      0
  RRS1 WILD-TYPE    203    132     46      3
D404V1, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            5            132
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RRS1 MUTATED        1      2      1      1      0
  RRS1 WILD-TYPE     38     94     43     87     80
D404V2, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            2             94
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RRS1 MUTATED        2      1      1      0      1
  RRS1 WILD-TYPE     24     78     72     82     57
D404V3, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            1             78
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRS1 MUTATED        3      1      1      0
  RRS1 WILD-TYPE    124     50     70     69
D404V4, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            1             50
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RRS1 MUTATED        2      2      2      0      1
  RRS1 WILD-TYPE     82     83     83     69     46
D404V5, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            2             83
  CLUS_3            2             83
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RRS1 MUTATED        1      0      1      5
  RRS1 WILD-TYPE     94     74    120     75
D404V6, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            0             74
  CLUS_3            1            120
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RRS1 MUTATED        2      1      1      2      0      1
  RRS1 WILD-TYPE     50     63     71    102     40     58
D404V7, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            1             63
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RRS1 MUTATED        6      0      1
  RRS1 WILD-TYPE    211     75     98
D404V8, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            6            211
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RRS1 MUTATED        3      1      1
  RRS1 WILD-TYPE    118    107     71
D404V9, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            1            107
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RRS1 MUTATED        3      0      1      0      1
  RRS1 WILD-TYPE     85     66     44     55     46
D404V10, multiclass
        clus
vv       RRS1 MUTATED RRS1 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(405) Variable = ZCRB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCRB1 MUTATED        0      6      0      0
  ZCRB1 WILD-TYPE    204    131     47      3
D405V1, multiclass
        clus
vv       ZCRB1 MUTATED ZCRB1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             6             131
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCRB1 MUTATED        0      5      0      0      0
  ZCRB1 WILD-TYPE     39     91     44     88     80
D405V2, multiclass
        clus
vv       ZCRB1 MUTATED ZCRB1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCRB1 MUTATED        0      1      2      0      1
  ZCRB1 WILD-TYPE     26     78     71     82     57
D405V3, multiclass
        clus
vv       ZCRB1 MUTATED ZCRB1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCRB1 MUTATED        0      3      1      0
  ZCRB1 WILD-TYPE    127     48     70     69
D405V4, multiclass
        clus
vv       ZCRB1 MUTATED ZCRB1 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             3              48
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCRB1 MUTATED        0      1      4      1      0
  ZCRB1 WILD-TYPE     84     84     81     68     47
D405V5, multiclass
        clus
vv       ZCRB1 MUTATED ZCRB1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCRB1 MUTATED        1      0      0      5
  ZCRB1 WILD-TYPE     94     74    121     75
D405V6, multiclass
        clus
vv       ZCRB1 MUTATED ZCRB1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZCRB1 MUTATED        3      1      1      1      0      0
  ZCRB1 WILD-TYPE     49     63     71    103     40     59
D405V7, multiclass
        clus
vv       ZCRB1 MUTATED ZCRB1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             1              63
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZCRB1 MUTATED        5      0      1
  ZCRB1 WILD-TYPE    212     75     98
D405V8, multiclass
        clus
vv       ZCRB1 MUTATED ZCRB1 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZCRB1 MUTATED        1      1      1
  ZCRB1 WILD-TYPE    120    107     71
D405V9, multiclass
        clus
vv       ZCRB1 MUTATED ZCRB1 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCRB1 MUTATED        1      0      0      0      2
  ZCRB1 WILD-TYPE     87     66     45     55     45
D405V10, multiclass
        clus
vv       ZCRB1 MUTATED ZCRB1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(406) Variable = LINGO4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LINGO4 MUTATED        2      7      1      0
  LINGO4 WILD-TYPE    202    130     46      3
D406V1, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              7              130
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LINGO4 MUTATED        2      5      1      0      1
  LINGO4 WILD-TYPE     37     91     43     88     79
D406V2, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LINGO4 MUTATED        0      3      2      2      2
  LINGO4 WILD-TYPE     26     76     71     80     56
D406V3, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              2               71
  CLUS_4              2               80
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LINGO4 MUTATED        1      3      2      3
  LINGO4 WILD-TYPE    126     48     69     66
D406V4, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              3               48
  CLUS_3              2               69
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LINGO4 MUTATED        1      4      4      0      1
  LINGO4 WILD-TYPE     83     81     81     69     46
D406V5, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              4               81
  CLUS_3              4               81
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LINGO4 MUTATED        2      3      0      5
  LINGO4 WILD-TYPE     93     71    121     75
D406V6, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              3               71
  CLUS_3              0              121
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LINGO4 MUTATED        2      4      2      2      1      0
  LINGO4 WILD-TYPE     50     60     70    102     39     59
D406V7, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              4               60
  CLUS_3              2               70
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LINGO4 MUTATED        9      1      1
  LINGO4 WILD-TYPE    208     74     98
D406V8, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LINGO4 MUTATED        4      1      2
  LINGO4 WILD-TYPE    117    107     70
D406V9, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LINGO4 MUTATED        2      1      2      0      2
  LINGO4 WILD-TYPE     86     65     43     55     45
D406V10, multiclass
        clus
vv       LINGO4 MUTATED LINGO4 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(407) Variable = MAP9 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP9 MUTATED        2      8      2      0
  MAP9 WILD-TYPE    202    129     45      3
D407V1, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            2            202
  CLUS_2            8            129
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP9 MUTATED        2      8      1      0      0
  MAP9 WILD-TYPE     37     88     43     88     80
D407V2, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            8             88
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP9 MUTATED        0      5      2      1      3
  MAP9 WILD-TYPE     26     74     71     81     55
D407V3, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            5             74
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP9 MUTATED        2      5      4      0
  MAP9 WILD-TYPE    125     46     67     69
D407V4, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            5             46
  CLUS_3            4             67
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP9 MUTATED        1      1      8      1      1
  MAP9 WILD-TYPE     83     84     77     68     46
D407V5, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            1             84
  CLUS_3            8             77
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP9 MUTATED        1      1      1      9
  MAP9 WILD-TYPE     94     73    120     71
D407V6, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            9             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP9 MUTATED        4      2      3      2      1      1
  MAP9 WILD-TYPE     48     62     69    102     39     58
D407V7, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            2             62
  CLUS_3            3             69
  CLUS_4            2            102
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP9 MUTATED       13      0      0
  MAP9 WILD-TYPE    204     75     99
D407V8, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1           13            204
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MAP9 MUTATED        4      3      2
  MAP9 WILD-TYPE    117    105     70
D407V9, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            3            105
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP9 MUTATED        3      0      0      1      5
  MAP9 WILD-TYPE     85     66     45     54     42
D407V10, multiclass
        clus
vv       MAP9 MUTATED MAP9 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            1             54
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(408) Variable = CCDC27 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC27 MUTATED        1      7      0      0
  CCDC27 WILD-TYPE    203    130     47      3
D408V1, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC27 MUTATED        0      3      2      0      2
  CCDC27 WILD-TYPE     39     93     42     88     78
D408V2, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC27 MUTATED        1      3      3      1      0
  CCDC27 WILD-TYPE     25     76     70     81     58
D408V3, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC27 MUTATED        3      2      3      0
  CCDC27 WILD-TYPE    124     49     68     69
D408V4, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              2               49
  CLUS_3              3               68
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC27 MUTATED        0      2      4      0      1
  CCDC27 WILD-TYPE     84     83     81     69     46
D408V5, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              4               81
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC27 MUTATED        2      1      2      2
  CCDC27 WILD-TYPE     93     73    119     78
D408V6, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC27 MUTATED        1      3      2      2      0      0
  CCDC27 WILD-TYPE     51     61     70    102     40     59
D408V7, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              3               61
  CLUS_3              2               70
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC27 MUTATED        5      2      1
  CCDC27 WILD-TYPE    212     73     98
D408V8, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC27 MUTATED        0      2      4
  CCDC27 WILD-TYPE    121    106     68
D408V9, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              0              121
  CLUS_2              2              106
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC27 MUTATED        0      3      2      0      1
  CCDC27 WILD-TYPE     88     63     43     55     46
D408V10, multiclass
        clus
vv       CCDC27 MUTATED CCDC27 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              3               63
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(409) Variable = DDX60 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX60 MUTATED        1     13      1      0
  DDX60 WILD-TYPE    203    124     46      3
D409V1, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            13             124
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX60 MUTATED        2      7      2      1      1
  DDX60 WILD-TYPE     37     89     42     87     79
D409V2, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             7              89
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX60 MUTATED        1      6      3      0      2
  DDX60 WILD-TYPE     25     73     70     82     56
D409V3, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             6              73
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX60 MUTATED        2      6      4      0
  DDX60 WILD-TYPE    125     45     67     69
D409V4, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             6              45
  CLUS_3             4              67
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX60 MUTATED        1      1     11      1      0
  DDX60 WILD-TYPE     83     84     74     68     47
D409V5, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3            11              74
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX60 MUTATED        2      3      3      6
  DDX60 WILD-TYPE     93     71    118     74
D409V6, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             3              71
  CLUS_3             3             118
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX60 MUTATED        4      5      2      3      0      1
  DDX60 WILD-TYPE     48     59     70    101     40     58
D409V7, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             5              59
  CLUS_3             2              70
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX60 MUTATED       12      1      2
  DDX60 WILD-TYPE    205     74     97
D409V8, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX60 MUTATED        2      2      5
  DDX60 WILD-TYPE    119    106     67
D409V9, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             2             106
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX60 MUTATED        3      1      3      0      2
  DDX60 WILD-TYPE     85     65     42     55     45
D409V10, multiclass
        clus
vv       DDX60 MUTATED DDX60 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(410) Variable = ACTL6A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6A MUTATED        0      7      1      0
  ACTL6A WILD-TYPE    204    130     46      3
D410V1, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              0              204
  CLUS_2              7              130
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTL6A MUTATED        0      6      2      0      0
  ACTL6A WILD-TYPE     39     90     42     88     80
D410V2, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              0               39
  CLUS_2              6               90
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTL6A MUTATED        1      0      3      1      2
  ACTL6A WILD-TYPE     25     79     70     81     56
D410V3, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               79
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6A MUTATED        2      4      0      1
  ACTL6A WILD-TYPE    125     47     71     68
D410V4, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              2              125
  CLUS_2              4               47
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTL6A MUTATED        0      1      3      2      2
  ACTL6A WILD-TYPE     84     84     82     67     45
D410V5, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              3               82
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTL6A MUTATED        3      1      1      3
  ACTL6A WILD-TYPE     92     73    120     77
D410V6, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACTL6A MUTATED        2      3      2      1      0      0
  ACTL6A WILD-TYPE     50     61     70    103     40     59
D410V7, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              2               50
  CLUS_2              3               61
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTL6A MUTATED        7      1      0
  ACTL6A WILD-TYPE    210     74     99
D410V8, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              7              210
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ACTL6A MUTATED        4      1      3
  ACTL6A WILD-TYPE    117    107     69
D410V9, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              4              117
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTL6A MUTATED        3      1      3      0      1
  ACTL6A WILD-TYPE     85     65     42     55     46
D410V10, multiclass
        clus
vv       ACTL6A MUTATED ACTL6A WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(411) Variable = PFKP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PFKP MUTATED        3     14      1      0
  PFKP WILD-TYPE    201    123     46      3
D411V1, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            3            201
  CLUS_2           14            123
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PFKP MUTATED        0      8      4      1      0
  PFKP WILD-TYPE     39     88     40     87     80
D411V2, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            0             39
  CLUS_2            8             88
  CLUS_3            4             40
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PFKP MUTATED        1      6      5      0      2
  PFKP WILD-TYPE     25     73     68     82     56
D411V3, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            1             25
  CLUS_2            6             73
  CLUS_3            5             68
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PFKP MUTATED        2      7      5      0
  PFKP WILD-TYPE    125     44     66     69
D411V4, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            2            125
  CLUS_2            7             44
  CLUS_3            5             66
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PFKP MUTATED        1      4      6      4      2
  PFKP WILD-TYPE     83     81     79     65     45
D411V5, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            1             83
  CLUS_2            4             81
  CLUS_3            6             79
  CLUS_4            4             65
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PFKP MUTATED        6      2      1      8
  PFKP WILD-TYPE     89     72    120     72
D411V6, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            6             89
  CLUS_2            2             72
  CLUS_3            1            120
  CLUS_4            8             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PFKP MUTATED        3      9      2      2      1      1
  PFKP WILD-TYPE     49     55     70    102     39     58
D411V7, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            3             49
  CLUS_2            9             55
  CLUS_3            2             70
  CLUS_4            2            102
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PFKP MUTATED       17      0      1
  PFKP WILD-TYPE    200     75     98
D411V8, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1           17            200
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PFKP MUTATED        5      2      3
  PFKP WILD-TYPE    116    106     69
D411V9, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            5            116
  CLUS_2            2            106
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PFKP MUTATED        3      0      3      1      3
  PFKP WILD-TYPE     85     66     42     54     44
D411V10, multiclass
        clus
vv       PFKP MUTATED PFKP WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            3             42
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(412) Variable = OR2J3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2J3 MUTATED        3      6      0      0
  OR2J3 WILD-TYPE    201    131     47      3
D412V1, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             6             131
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2J3 MUTATED        0      6      0      1      0
  OR2J3 WILD-TYPE     39     90     44     87     80
D412V2, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             6              90
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2J3 MUTATED        1      2      3      2      0
  OR2J3 WILD-TYPE     25     77     70     80     58
D412V3, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2J3 MUTATED        1      3      1      3
  OR2J3 WILD-TYPE    126     48     70     66
D412V4, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             3              48
  CLUS_3             1              70
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2J3 MUTATED        2      1      2      2      2
  OR2J3 WILD-TYPE     82     84     83     67     45
D412V5, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             1              84
  CLUS_3             2              83
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2J3 MUTATED        6      1      1      1
  OR2J3 WILD-TYPE     89     73    120     79
D412V6, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR2J3 MUTATED        2      1      0      1      3      2
  OR2J3 WILD-TYPE     50     63     72    103     37     57
D412V7, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             1              63
  CLUS_3             0              72
  CLUS_4             1             103
  CLUS_5             3              37
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2J3 MUTATED        6      1      2
  OR2J3 WILD-TYPE    211     74     97
D412V8, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2J3 MUTATED        3      1      3
  OR2J3 WILD-TYPE    118    107     69
D412V9, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2J3 MUTATED        2      0      1      1      3
  OR2J3 WILD-TYPE     86     66     44     54     44
D412V10, multiclass
        clus
vv       OR2J3 MUTATED OR2J3 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(413) Variable = C20ORF160 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF160 MUTATED        1      5      1      0
  C20ORF160 WILD-TYPE    203    132     46      3
D413V1, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 1                 203
  CLUS_2                 5                 132
  CLUS_3                 1                  46
  CLUS_4                 0                   3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C20ORF160 MUTATED        1      3      2      1      0
  C20ORF160 WILD-TYPE     38     93     42     87     80
D413V2, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 1                  38
  CLUS_2                 3                  93
  CLUS_3                 2                  42
  CLUS_4                 1                  87
  CLUS_5                 0                  80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C20ORF160 MUTATED        0      2      1      0      2
  C20ORF160 WILD-TYPE     26     77     72     82     56
D413V3, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 0                  26
  CLUS_2                 2                  77
  CLUS_3                 1                  72
  CLUS_4                 0                  82
  CLUS_5                 2                  56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF160 MUTATED        1      2      1      1
  C20ORF160 WILD-TYPE    126     49     70     68
D413V4, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 1                 126
  CLUS_2                 2                  49
  CLUS_3                 1                  70
  CLUS_4                 1                  68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C20ORF160 MUTATED        1      0      5      1      0
  C20ORF160 WILD-TYPE     83     85     80     68     47
D413V5, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 1                  83
  CLUS_2                 0                  85
  CLUS_3                 5                  80
  CLUS_4                 1                  68
  CLUS_5                 0                  47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF160 MUTATED        2      0      1      4
  C20ORF160 WILD-TYPE     93     74    120     76
D413V6, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 2                  93
  CLUS_2                 0                  74
  CLUS_3                 1                 120
  CLUS_4                 4                  76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C20ORF160 MUTATED        1      3      1      1      0      1
  C20ORF160 WILD-TYPE     51     61     71    103     40     58
D413V7, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 1                  51
  CLUS_2                 3                  61
  CLUS_3                 1                  71
  CLUS_4                 1                 103
  CLUS_5                 0                  40
  CLUS_6                 1                  58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF160 MUTATED        6      0      1
  C20ORF160 WILD-TYPE    211     75     98
D413V8, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 6                 211
  CLUS_2                 0                  75
  CLUS_3                 1                  98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF160 MUTATED        3      1      2
  C20ORF160 WILD-TYPE    118    107     70
D413V9, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 3                 118
  CLUS_2                 1                 107
  CLUS_3                 2                  70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C20ORF160 MUTATED        1      0      2      1      2
  C20ORF160 WILD-TYPE     87     66     43     54     45
D413V10, multiclass
        clus
vv       C20ORF160 MUTATED C20ORF160 WILD-TYPE
  CLUS_1                 1                  87
  CLUS_2                 0                  66
  CLUS_3                 2                  43
  CLUS_4                 1                  54
  CLUS_5                 2                  45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(414) Variable = SGK3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK3 MUTATED        1      6      0      0
  SGK3 WILD-TYPE    203    131     47      3
D414V1, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            6            131
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGK3 MUTATED        0      3      1      0      0
  SGK3 WILD-TYPE     39     93     43     88     80
D414V2, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGK3 MUTATED        0      4      2      0      1
  SGK3 WILD-TYPE     26     75     71     82     57
D414V3, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK3 MUTATED        0      4      3      0
  SGK3 WILD-TYPE    127     47     68     69
D414V4, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            4             47
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGK3 MUTATED        0      3      3      0      0
  SGK3 WILD-TYPE     84     82     82     69     47
D414V5, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            3             82
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK3 MUTATED        0      1      0      5
  SGK3 WILD-TYPE     95     73    121     75
D414V6, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            0             95
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SGK3 MUTATED        1      3      0      3      0      0
  SGK3 WILD-TYPE     51     61     72    101     40     59
D414V7, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            3             61
  CLUS_3            0             72
  CLUS_4            3            101
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SGK3 MUTATED        7      0      0
  SGK3 WILD-TYPE    210     75     99
D414V8, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SGK3 MUTATED        1      2      0
  SGK3 WILD-TYPE    120    106     72
D414V9, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            1            120
  CLUS_2            2            106
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGK3 MUTATED        3      0      0      0      0
  SGK3 WILD-TYPE     85     66     45     55     47
D414V10, multiclass
        clus
vv       SGK3 MUTATED SGK3 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(415) Variable = SMTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMTN MUTATED        3     13      4      0
  SMTN WILD-TYPE    201    124     43      3
D415V1, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            3            201
  CLUS_2           13            124
  CLUS_3            4             43
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMTN MUTATED        3      9      2      2      1
  SMTN WILD-TYPE     36     87     42     86     79
D415V2, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            3             36
  CLUS_2            9             87
  CLUS_3            2             42
  CLUS_4            2             86
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMTN MUTATED        1      5      4      5      3
  SMTN WILD-TYPE     25     74     69     77     55
D415V3, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            1             25
  CLUS_2            5             74
  CLUS_3            4             69
  CLUS_4            5             77
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMTN MUTATED        3      7      4      4
  SMTN WILD-TYPE    124     44     67     65
D415V4, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            3            124
  CLUS_2            7             44
  CLUS_3            4             67
  CLUS_4            4             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMTN MUTATED        1      4     10      1      3
  SMTN WILD-TYPE     83     81     75     68     44
D415V5, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            1             83
  CLUS_2            4             81
  CLUS_3           10             75
  CLUS_4            1             68
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMTN MUTATED        2      5      1     11
  SMTN WILD-TYPE     93     69    120     69
D415V6, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            2             93
  CLUS_2            5             69
  CLUS_3            1            120
  CLUS_4           11             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMTN MUTATED        8      4      3      3      2      0
  SMTN WILD-TYPE     44     60     69    101     38     59
D415V7, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            8             44
  CLUS_2            4             60
  CLUS_3            3             69
  CLUS_4            3            101
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMTN MUTATED       16      3      1
  SMTN WILD-TYPE    201     72     98
D415V8, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1           16            201
  CLUS_2            3             72
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMTN MUTATED        8      2      5
  SMTN WILD-TYPE    113    106     67
D415V9, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            8            113
  CLUS_2            2            106
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMTN MUTATED        5      1      1      1      7
  SMTN WILD-TYPE     83     65     44     54     40
D415V10, multiclass
        clus
vv       SMTN MUTATED SMTN WILD-TYPE
  CLUS_1            5             83
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            7             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(416) Variable = SLC9A11 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A11 MUTATED        7     14      3      0
  SLC9A11 WILD-TYPE    197    123     44      3
D416V1, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               7               197
  CLUS_2              14               123
  CLUS_3               3                44
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A11 MUTATED        1     10      2      3      2
  SLC9A11 WILD-TYPE     38     86     42     85     78
D416V2, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               1                38
  CLUS_2              10                86
  CLUS_3               2                42
  CLUS_4               3                85
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A11 MUTATED        3      7      4      3      6
  SLC9A11 WILD-TYPE     23     72     69     79     52
D416V3, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               3                23
  CLUS_2               7                72
  CLUS_3               4                69
  CLUS_4               3                79
  CLUS_5               6                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A11 MUTATED        7      8      5      3
  SLC9A11 WILD-TYPE    120     43     66     66
D416V4, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               7               120
  CLUS_2               8                43
  CLUS_3               5                66
  CLUS_4               3                66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A11 MUTATED        4      4     11      1      3
  SLC9A11 WILD-TYPE     80     81     74     68     44
D416V5, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               4                80
  CLUS_2               4                81
  CLUS_3              11                74
  CLUS_4               1                68
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A11 MUTATED        5      5      4      9
  SLC9A11 WILD-TYPE     90     69    117     71
D416V6, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               5                90
  CLUS_2               5                69
  CLUS_3               4               117
  CLUS_4               9                71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC9A11 MUTATED        3     11      4      4      0      2
  SLC9A11 WILD-TYPE     49     53     68    100     40     57
D416V7, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               3                49
  CLUS_2              11                53
  CLUS_3               4                68
  CLUS_4               4               100
  CLUS_5               0                40
  CLUS_6               2                57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC9A11 MUTATED       20      1      3
  SLC9A11 WILD-TYPE    197     74     96
D416V8, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1              20               197
  CLUS_2               1                74
  CLUS_3               3                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC9A11 MUTATED        4      3      8
  SLC9A11 WILD-TYPE    117    105     64
D416V9, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               3               105
  CLUS_3               8                64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A11 MUTATED        1      2      6      1      5
  SLC9A11 WILD-TYPE     87     64     39     54     42
D416V10, multiclass
        clus
vv       SLC9A11 MUTATED SLC9A11 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               2                64
  CLUS_3               6                39
  CLUS_4               1                54
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(417) Variable = JHDM1D MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JHDM1D MUTATED        1      7      2      0
  JHDM1D WILD-TYPE    203    130     45      3
D417V1, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              1              203
  CLUS_2              7              130
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JHDM1D MUTATED        1      6      0      0      0
  JHDM1D WILD-TYPE     38     90     44     88     80
D417V2, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               90
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JHDM1D MUTATED        0      3      4      0      3
  JHDM1D WILD-TYPE     26     76     69     82     55
D417V3, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              4               69
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JHDM1D MUTATED        2      6      1      1
  JHDM1D WILD-TYPE    125     45     70     68
D417V4, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              2              125
  CLUS_2              6               45
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JHDM1D MUTATED        1      1      4      0      3
  JHDM1D WILD-TYPE     83     84     81     69     44
D417V5, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              4               81
  CLUS_4              0               69
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  JHDM1D MUTATED        2      1      1      5
  JHDM1D WILD-TYPE     93     73    120     75
D417V6, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  JHDM1D MUTATED        2      5      1      0      1      1
  JHDM1D WILD-TYPE     50     59     71    104     39     58
D417V7, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              2               50
  CLUS_2              5               59
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  JHDM1D MUTATED        8      0      2
  JHDM1D WILD-TYPE    209     75     97
D417V8, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              8              209
  CLUS_2              0               75
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  JHDM1D MUTATED        4      0      3
  JHDM1D WILD-TYPE    117    108     69
D417V9, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              4              117
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  JHDM1D MUTATED        1      0      1      1      4
  JHDM1D WILD-TYPE     87     66     44     54     43
D417V10, multiclass
        clus
vv       JHDM1D MUTATED JHDM1D WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(418) Variable = GLT8D1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT8D1 MUTATED        0      7      0      0
  GLT8D1 WILD-TYPE    204    130     47      3
D418V1, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLT8D1 MUTATED        0      4      1      0      0
  GLT8D1 WILD-TYPE     39     92     43     88     80
D418V2, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLT8D1 MUTATED        1      2      3      0      0
  GLT8D1 WILD-TYPE     25     77     70     82     58
D418V3, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               77
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT8D1 MUTATED        1      4      1      0
  GLT8D1 WILD-TYPE    126     47     70     69
D418V4, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              4               47
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLT8D1 MUTATED        0      0      4      1      2
  GLT8D1 WILD-TYPE     84     85     81     68     45
D418V5, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLT8D1 MUTATED        2      2      0      3
  GLT8D1 WILD-TYPE     93     72    121     77
D418V6, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLT8D1 MUTATED        1      4      2      0      0      0
  GLT8D1 WILD-TYPE     51     60     70    104     40     59
D418V7, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              4               60
  CLUS_3              2               70
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLT8D1 MUTATED        7      0      0
  GLT8D1 WILD-TYPE    210     75     99
D418V8, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              7              210
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLT8D1 MUTATED        2      0      3
  GLT8D1 WILD-TYPE    119    108     69
D418V9, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLT8D1 MUTATED        1      0      2      0      2
  GLT8D1 WILD-TYPE     87     66     43     55     45
D418V10, multiclass
        clus
vv       GLT8D1 MUTATED GLT8D1 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(419) Variable = DAPK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAPK1 MUTATED        6     13      2      0
  DAPK1 WILD-TYPE    198    124     45      3
D419V1, multiclass
        clus
vv       DAPK1 MUTATED DAPK1 WILD-TYPE
  CLUS_1             6             198
  CLUS_2            13             124
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAPK1 MUTATED        2     13      0      1      2
  DAPK1 WILD-TYPE     37     83     44     87     78
D419V2, multiclass
        clus
vv       DAPK1 MUTATED DAPK1 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            13              83
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAPK1 MUTATED        1      2      6      1      5
  DAPK1 WILD-TYPE     25     77     67     81     53
D419V3, multiclass
        clus
vv       DAPK1 MUTATED DAPK1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             6              67
  CLUS_4             1              81
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAPK1 MUTATED        4      8      2      1
  DAPK1 WILD-TYPE    123     43     69     68
D419V4, multiclass
        clus
vv       DAPK1 MUTATED DAPK1 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             8              43
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAPK1 MUTATED        0      3      9      5      4
  DAPK1 WILD-TYPE     84     82     76     64     43
D419V5, multiclass
        clus
vv       DAPK1 MUTATED DAPK1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             9              76
  CLUS_4             5              64
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DAPK1 MUTATED        9      2      0     10
  DAPK1 WILD-TYPE     86     72    121     70
D419V6, multiclass
        clus
vv       DAPK1 MUTATED DAPK1 WILD-TYPE
  CLUS_1             9              86
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4            10              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DAPK1 MUTATED        9      5      2      2      4      0
  DAPK1 WILD-TYPE     43     59     70    102     36     59
D419V7, multiclass
        clus
vv       DAPK1 MUTATED DAPK1 WILD-TYPE
  CLUS_1             9              43
  CLUS_2             5              59
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             4              36
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DAPK1 MUTATED       18      2      2
  DAPK1 WILD-TYPE    199     73     97
D419V8, multiclass
        clus
vv       DAPK1 MUTATED DAPK1 WILD-TYPE
  CLUS_1            18             199
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DAPK1 MUTATED        8      4      2
  DAPK1 WILD-TYPE    113    104     70
D419V9, multiclass
        clus
vv       DAPK1 MUTATED DAPK1 WILD-TYPE
  CLUS_1             8             113
  CLUS_2             4             104
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DAPK1 MUTATED        6      1      1      0      6
  DAPK1 WILD-TYPE     82     65     44     55     41
D419V10, multiclass
        clus
vv       DAPK1 MUTATED DAPK1 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(420) Variable = EDNRB MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EDNRB MUTATED       10     16      2      0
  EDNRB WILD-TYPE    194    121     45      3
D420V1, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1            10             194
  CLUS_2            16             121
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EDNRB MUTATED        0     15      0      3      1
  EDNRB WILD-TYPE     39     81     44     85     79
D420V2, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             0              39
  CLUS_2            15              81
  CLUS_3             0              44
  CLUS_4             3              85
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EDNRB MUTATED        5      6      8      2      6
  EDNRB WILD-TYPE     21     73     65     80     52
D420V3, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             5              21
  CLUS_2             6              73
  CLUS_3             8              65
  CLUS_4             2              80
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EDNRB MUTATED       11     14      1      1
  EDNRB WILD-TYPE    116     37     70     68
D420V4, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1            11             116
  CLUS_2            14              37
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EDNRB MUTATED        5      2      9      4      7
  EDNRB WILD-TYPE     79     83     76     65     40
D420V5, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             5              79
  CLUS_2             2              83
  CLUS_3             9              76
  CLUS_4             4              65
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EDNRB MUTATED       10      1      6     10
  EDNRB WILD-TYPE     85     73    115     70
D420V6, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1            10              85
  CLUS_2             1              73
  CLUS_3             6             115
  CLUS_4            10              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EDNRB MUTATED        7      9      3      3      2      4
  EDNRB WILD-TYPE     45     55     69    101     38     55
D420V7, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             7              45
  CLUS_2             9              55
  CLUS_3             3              69
  CLUS_4             3             101
  CLUS_5             2              38
  CLUS_6             4              55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EDNRB MUTATED       21      1      6
  EDNRB WILD-TYPE    196     74     93
D420V8, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1            21             196
  CLUS_2             1              74
  CLUS_3             6              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EDNRB MUTATED        7      3      8
  EDNRB WILD-TYPE    114    105     64
D420V9, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             7             114
  CLUS_2             3             105
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EDNRB MUTATED        4      1      5      1      7
  EDNRB WILD-TYPE     84     65     40     54     40
D420V10, multiclass
        clus
vv       EDNRB MUTATED EDNRB WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             5              40
  CLUS_4             1              54
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(421) Variable = C16ORF70 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF70 MUTATED        0      6      0      0
  C16ORF70 WILD-TYPE    204    131     47      3
D421V1, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                0                204
  CLUS_2                6                131
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF70 MUTATED        0      4      0      0      0
  C16ORF70 WILD-TYPE     39     92     44     88     80
D421V2, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                4                 92
  CLUS_3                0                 44
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF70 MUTATED        0      4      1      0      0
  C16ORF70 WILD-TYPE     26     75     72     82     58
D421V3, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                4                 75
  CLUS_3                1                 72
  CLUS_4                0                 82
  CLUS_5                0                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF70 MUTATED        0      2      3      0
  C16ORF70 WILD-TYPE    127     49     68     69
D421V4, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                0                127
  CLUS_2                2                 49
  CLUS_3                3                 68
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF70 MUTATED        0      1      2      1      1
  C16ORF70 WILD-TYPE     84     84     83     68     46
D421V5, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                2                 83
  CLUS_4                1                 68
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF70 MUTATED        3      1      0      1
  C16ORF70 WILD-TYPE     92     73    121     79
D421V6, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                3                 92
  CLUS_2                1                 73
  CLUS_3                0                121
  CLUS_4                1                 79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C16ORF70 MUTATED        1      3      1      1      0      0
  C16ORF70 WILD-TYPE     51     61     71    103     40     59
D421V7, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                3                 61
  CLUS_3                1                 71
  CLUS_4                1                103
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF70 MUTATED        6      0      0
  C16ORF70 WILD-TYPE    211     75     99
D421V8, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                6                211
  CLUS_2                0                 75
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF70 MUTATED        1      1      2
  C16ORF70 WILD-TYPE    120    107     70
D421V9, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                1                120
  CLUS_2                1                107
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF70 MUTATED        2      0      1      0      1
  C16ORF70 WILD-TYPE     86     66     44     55     46
D421V10, multiclass
        clus
vv       C16ORF70 MUTATED C16ORF70 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                0                 66
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(422) Variable = SLC10A6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC10A6 MUTATED        1      5      1      0
  SLC10A6 WILD-TYPE    203    132     46      3
D422V1, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               5               132
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC10A6 MUTATED        1      5      0      0      1
  SLC10A6 WILD-TYPE     38     91     44     88     79
D422V2, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               5                91
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC10A6 MUTATED        1      1      2      0      2
  SLC10A6 WILD-TYPE     25     78     71     82     56
D422V3, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                78
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC10A6 MUTATED        2      4      0      0
  SLC10A6 WILD-TYPE    125     47     71     69
D422V4, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               4                47
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC10A6 MUTATED        1      0      5      0      2
  SLC10A6 WILD-TYPE     83     85     80     69     45
D422V5, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                85
  CLUS_3               5                80
  CLUS_4               0                69
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC10A6 MUTATED        2      0      1      5
  SLC10A6 WILD-TYPE     93     74    120     75
D422V6, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               0                74
  CLUS_3               1               120
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC10A6 MUTATED        4      1      2      0      0      1
  SLC10A6 WILD-TYPE     48     63     70    104     40     58
D422V7, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               1                63
  CLUS_3               2                70
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC10A6 MUTATED        7      0      1
  SLC10A6 WILD-TYPE    210     75     98
D422V8, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               7               210
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC10A6 MUTATED        6      0      1
  SLC10A6 WILD-TYPE    115    108     71
D422V9, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               6               115
  CLUS_2               0               108
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC10A6 MUTATED        2      0      0      1      4
  SLC10A6 WILD-TYPE     86     66     45     54     43
D422V10, multiclass
        clus
vv       SLC10A6 MUTATED SLC10A6 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               1                54
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(423) Variable = CCDC80 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC80 MUTATED        3     12      3      0
  CCDC80 WILD-TYPE    201    125     44      3
D423V1, multiclass
        clus
vv       CCDC80 MUTATED CCDC80 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             12              125
  CLUS_3              3               44
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC80 MUTATED        2     10      3      0      1
  CCDC80 WILD-TYPE     37     86     41     88     79
D423V2, multiclass
        clus
vv       CCDC80 MUTATED CCDC80 WILD-TYPE
  CLUS_1              2               37
  CLUS_2             10               86
  CLUS_3              3               41
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC80 MUTATED        1      4      4      1      4
  CCDC80 WILD-TYPE     25     75     69     81     54
D423V3, multiclass
        clus
vv       CCDC80 MUTATED CCDC80 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              4               75
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC80 MUTATED        3      7      2      2
  CCDC80 WILD-TYPE    124     44     69     67
D423V4, multiclass
        clus
vv       CCDC80 MUTATED CCDC80 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              7               44
  CLUS_3              2               69
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC80 MUTATED        0      3     10      2      3
  CCDC80 WILD-TYPE     84     82     75     67     44
D423V5, multiclass
        clus
vv       CCDC80 MUTATED CCDC80 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3             10               75
  CLUS_4              2               67
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC80 MUTATED        4      3      1     10
  CCDC80 WILD-TYPE     91     71    120     70
D423V6, multiclass
        clus
vv       CCDC80 MUTATED CCDC80 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              3               71
  CLUS_3              1              120
  CLUS_4             10               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC80 MUTATED        7      6      2      3      1      0
  CCDC80 WILD-TYPE     45     58     70    101     39     59
D423V7, multiclass
        clus
vv       CCDC80 MUTATED CCDC80 WILD-TYPE
  CLUS_1              7               45
  CLUS_2              6               58
  CLUS_3              2               70
  CLUS_4              3              101
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC80 MUTATED       16      2      1
  CCDC80 WILD-TYPE    201     73     98
D423V8, multiclass
        clus
vv       CCDC80 MUTATED CCDC80 WILD-TYPE
  CLUS_1             16              201
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC80 MUTATED        6      1      6
  CCDC80 WILD-TYPE    115    107     66
D423V9, multiclass
        clus
vv       CCDC80 MUTATED CCDC80 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              1              107
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC80 MUTATED        3      1      3      0      6
  CCDC80 WILD-TYPE     85     65     42     55     41
D423V10, multiclass
        clus
vv       CCDC80 MUTATED CCDC80 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(424) Variable = DNAJC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC1 MUTATED        0     11      0      0
  DNAJC1 WILD-TYPE    204    126     47      3
D424V1, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              0              204
  CLUS_2             11              126
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJC1 MUTATED        2      6      1      0      1
  DNAJC1 WILD-TYPE     37     90     43     88     79
D424V2, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              6               90
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJC1 MUTATED        1      3      3      0      2
  DNAJC1 WILD-TYPE     25     76     70     82     56
D424V3, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC1 MUTATED        2      4      3      0
  DNAJC1 WILD-TYPE    125     47     68     69
D424V4, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              4               47
  CLUS_3              3               68
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJC1 MUTATED        0      3      6      1      1
  DNAJC1 WILD-TYPE     84     82     79     68     46
D424V5, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJC1 MUTATED        2      2      1      6
  DNAJC1 WILD-TYPE     93     72    120     74
D424V6, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNAJC1 MUTATED        3      5      0      3      0      0
  DNAJC1 WILD-TYPE     49     59     72    101     40     59
D424V7, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              5               59
  CLUS_3              0               72
  CLUS_4              3              101
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJC1 MUTATED        9      2      0
  DNAJC1 WILD-TYPE    208     73     99
D424V8, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              2               73
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJC1 MUTATED        3      3      4
  DNAJC1 WILD-TYPE    118    105     68
D424V9, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              3              105
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJC1 MUTATED        2      2      3      0      3
  DNAJC1 WILD-TYPE     86     64     42     55     44
D424V10, multiclass
        clus
vv       DNAJC1 MUTATED DNAJC1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              2               64
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(425) Variable = CADPS2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CADPS2 MUTATED        2      6      1      0
  CADPS2 WILD-TYPE    202    131     46      3
D425V1, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              6              131
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CADPS2 MUTATED        1      6      1      1      1
  CADPS2 WILD-TYPE     38     90     43     87     79
D425V2, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               90
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CADPS2 MUTATED        1      3      2      0      1
  CADPS2 WILD-TYPE     25     76     71     82     57
D425V3, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CADPS2 MUTATED        2      4      1      0
  CADPS2 WILD-TYPE    125     47     70     69
D425V4, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              4               47
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CADPS2 MUTATED        0      1      6      1      2
  CADPS2 WILD-TYPE     84     84     79     68     45
D425V5, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CADPS2 MUTATED        2      2      0      6
  CADPS2 WILD-TYPE     93     72    121     74
D425V6, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CADPS2 MUTATED        1      3      4      1      1      0
  CADPS2 WILD-TYPE     51     61     68    103     39     59
D425V7, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              3               61
  CLUS_3              4               68
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CADPS2 MUTATED        8      1      1
  CADPS2 WILD-TYPE    209     74     98
D425V8, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              8              209
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CADPS2 MUTATED        5      2      3
  CADPS2 WILD-TYPE    116    106     69
D425V9, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              2              106
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CADPS2 MUTATED        2      2      1      0      5
  CADPS2 WILD-TYPE     86     64     44     55     42
D425V10, multiclass
        clus
vv       CADPS2 MUTATED CADPS2 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              2               64
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(426) Variable = ART5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ART5 MUTATED        1      4      0      0
  ART5 WILD-TYPE    203    133     47      3
D426V1, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            4            133
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ART5 MUTATED        0      4      0      0      0
  ART5 WILD-TYPE     39     92     44     88     80
D426V2, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ART5 MUTATED        0      3      1      0      1
  ART5 WILD-TYPE     26     76     72     82     57
D426V3, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ART5 MUTATED        1      0      3      1
  ART5 WILD-TYPE    126     51     68     68
D426V4, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            0             51
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ART5 MUTATED        1      1      2      1      0
  ART5 WILD-TYPE     83     84     83     68     47
D426V5, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            1             84
  CLUS_3            2             83
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ART5 MUTATED        1      2      1      1
  ART5 WILD-TYPE     94     72    120     79
D426V6, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            2             72
  CLUS_3            1            120
  CLUS_4            1             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ART5 MUTATED        1      1      0      1      1      1
  ART5 WILD-TYPE     51     63     72    103     39     58
D426V7, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            1             63
  CLUS_3            0             72
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ART5 MUTATED        3      0      2
  ART5 WILD-TYPE    214     75     97
D426V8, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            3            214
  CLUS_2            0             75
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ART5 MUTATED        2      1      1
  ART5 WILD-TYPE    119    107     71
D426V9, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            1            107
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ART5 MUTATED        3      0      0      1      0
  ART5 WILD-TYPE     85     66     45     54     47
D426V10, multiclass
        clus
vv       ART5 MUTATED ART5 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            1             54
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(427) Variable = PLAGL2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAGL2 MUTATED        2      3      1      0
  PLAGL2 WILD-TYPE    202    134     46      3
D427V1, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              3              134
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAGL2 MUTATED        0      4      0      2      1
  PLAGL2 WILD-TYPE     39     92     44     86     79
D427V2, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              0               44
  CLUS_4              2               86
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAGL2 MUTATED        1      0      1      2      2
  PLAGL2 WILD-TYPE     25     79     72     80     56
D427V3, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               79
  CLUS_3              1               72
  CLUS_4              2               80
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAGL2 MUTATED        2      3      0      1
  PLAGL2 WILD-TYPE    125     48     71     68
D427V4, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              3               48
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAGL2 MUTATED        1      1      4      0      1
  PLAGL2 WILD-TYPE     83     84     81     69     46
D427V5, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              4               81
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAGL2 MUTATED        0      2      2      3
  PLAGL2 WILD-TYPE     95     72    119     77
D427V6, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              2               72
  CLUS_3              2              119
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLAGL2 MUTATED        1      2      1      3      0      0
  PLAGL2 WILD-TYPE     51     62     71    101     40     59
D427V7, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              3              101
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLAGL2 MUTATED        5      1      1
  PLAGL2 WILD-TYPE    212     74     98
D427V8, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PLAGL2 MUTATED        2      3      2
  PLAGL2 WILD-TYPE    119    105     70
D427V9, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              3              105
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAGL2 MUTATED        0      2      2      1      2
  PLAGL2 WILD-TYPE     88     64     43     54     45
D427V10, multiclass
        clus
vv       PLAGL2 MUTATED PLAGL2 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              2               64
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(428) Variable = C16ORF63 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF63 MUTATED        1      6      1      0
  C16ORF63 WILD-TYPE    203    131     46      3
D428V1, multiclass
        clus
vv       C16ORF63 MUTATED C16ORF63 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                6                131
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF63 MUTATED        2      5      0      0      0
  C16ORF63 WILD-TYPE     37     91     44     88     80
D428V2, multiclass
        clus
vv       C16ORF63 MUTATED C16ORF63 WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                5                 91
  CLUS_3                0                 44
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF63 MUTATED        0      3      1      1      3
  C16ORF63 WILD-TYPE     26     76     72     81     55
D428V3, multiclass
        clus
vv       C16ORF63 MUTATED C16ORF63 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                3                 76
  CLUS_3                1                 72
  CLUS_4                1                 81
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF63 MUTATED        0      3      3      2
  C16ORF63 WILD-TYPE    127     48     68     67
D428V4, multiclass
        clus
vv       C16ORF63 MUTATED C16ORF63 WILD-TYPE
  CLUS_1                0                127
  CLUS_2                3                 48
  CLUS_3                3                 68
  CLUS_4                2                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF63 MUTATED        1      0      6      0      1
  C16ORF63 WILD-TYPE     83     85     79     69     46
D428V5, multiclass
        clus
vv       C16ORF63 MUTATED C16ORF63 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                0                 85
  CLUS_3                6                 79
  CLUS_4                0                 69
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C16ORF63 MUTATED        1      1      1      5
  C16ORF63 WILD-TYPE     94     73    120     75
D428V6, multiclass
        clus
vv       C16ORF63 MUTATED C16ORF63 WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                5                 75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C16ORF63 MUTATED        1      3      2      1      1      0
  C16ORF63 WILD-TYPE     51     61     70    103     39     59
D428V7, multiclass
        clus
vv       C16ORF63 MUTATED C16ORF63 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                3                 61
  CLUS_3                2                 70
  CLUS_4                1                103
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF63 MUTATED        6      2      0
  C16ORF63 WILD-TYPE    211     73     99
D428V8, multiclass
        clus
vv       C16ORF63 MUTATED C16ORF63 WILD-TYPE
  CLUS_1                6                211
  CLUS_2                2                 73
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C16ORF63 MUTATED        1      1      3
  C16ORF63 WILD-TYPE    120    107     69
D428V9, multiclass
        clus
vv       C16ORF63 MUTATED C16ORF63 WILD-TYPE
  CLUS_1                1                120
  CLUS_2                1                107
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C16ORF63 MUTATED        2      0      1      0      2
  C16ORF63 WILD-TYPE     86     66     44     55     45
D428V10, multiclass
        clus
vv       C16ORF63 MUTATED C16ORF63 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                0                 66
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(429) Variable = GCDH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCDH MUTATED        1      5      1      0
  GCDH WILD-TYPE    203    132     46      3
D429V1, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            1            203
  CLUS_2            5            132
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCDH MUTATED        1      4      0      0      1
  GCDH WILD-TYPE     38     92     44     88     79
D429V2, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            1             38
  CLUS_2            4             92
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCDH MUTATED        0      3      2      1      1
  GCDH WILD-TYPE     26     76     71     81     57
D429V3, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCDH MUTATED        1      4      1      1
  GCDH WILD-TYPE    126     47     70     68
D429V4, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            1            126
  CLUS_2            4             47
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCDH MUTATED        0      0      7      0      0
  GCDH WILD-TYPE     84     85     78     69     47
D429V5, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            7             78
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCDH MUTATED        1      1      1      4
  GCDH WILD-TYPE     94     73    120     76
D429V6, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GCDH MUTATED        1      3      1      1      1      0
  GCDH WILD-TYPE     51     61     71    103     39     59
D429V7, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            1             51
  CLUS_2            3             61
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GCDH MUTATED        5      2      0
  GCDH WILD-TYPE    212     73     99
D429V8, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            5            212
  CLUS_2            2             73
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GCDH MUTATED        2      0      3
  GCDH WILD-TYPE    119    108     69
D429V9, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            2            119
  CLUS_2            0            108
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCDH MUTATED        1      0      2      0      2
  GCDH WILD-TYPE     87     66     43     55     45
D429V10, multiclass
        clus
vv       GCDH MUTATED GCDH WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(430) Variable = FBXO34 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO34 MUTATED        1      8      0      0
  FBXO34 WILD-TYPE    203    129     47      3
D430V1, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              8              129
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO34 MUTATED        0      5      2      0      2
  FBXO34 WILD-TYPE     39     91     42     88     78
D430V2, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO34 MUTATED        0      2      2      1      1
  FBXO34 WILD-TYPE     26     77     71     81     57
D430V3, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO34 MUTATED        1      3      1      1
  FBXO34 WILD-TYPE    126     48     70     68
D430V4, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              3               48
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO34 MUTATED        0      0      7      0      2
  FBXO34 WILD-TYPE     84     85     78     69     45
D430V5, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              7               78
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO34 MUTATED        0      1      3      5
  FBXO34 WILD-TYPE     95     73    118     75
D430V6, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              1               73
  CLUS_3              3              118
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXO34 MUTATED        3      4      1      1      0      0
  FBXO34 WILD-TYPE     49     60     71    103     40     59
D430V7, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO34 MUTATED        8      1      0
  FBXO34 WILD-TYPE    209     74     99
D430V8, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              8              209
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO34 MUTATED        2      0      7
  FBXO34 WILD-TYPE    119    108     65
D430V9, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO34 MUTATED        1      0      5      0      3
  FBXO34 WILD-TYPE     87     66     40     55     44
D430V10, multiclass
        clus
vv       FBXO34 MUTATED FBXO34 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              5               40
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(431) Variable = SERPINA1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINA1 MUTATED        1      5      1      0
  SERPINA1 WILD-TYPE    203    132     46      3
D431V1, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                5                132
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINA1 MUTATED        1      2      0      0      0
  SERPINA1 WILD-TYPE     38     94     44     88     80
D431V2, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                2                 94
  CLUS_3                0                 44
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINA1 MUTATED        0      2      1      1      2
  SERPINA1 WILD-TYPE     26     77     72     81     56
D431V3, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                2                 77
  CLUS_3                1                 72
  CLUS_4                1                 81
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINA1 MUTATED        1      3      0      2
  SERPINA1 WILD-TYPE    126     48     71     67
D431V4, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                1                126
  CLUS_2                3                 48
  CLUS_3                0                 71
  CLUS_4                2                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINA1 MUTATED        0      3      1      0      2
  SERPINA1 WILD-TYPE     84     82     84     69     45
D431V5, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                3                 82
  CLUS_3                1                 84
  CLUS_4                0                 69
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINA1 MUTATED        2      1      0      3
  SERPINA1 WILD-TYPE     93     73    121     77
D431V6, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                1                 73
  CLUS_3                0                121
  CLUS_4                3                 77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERPINA1 MUTATED        1      3      0      2      1      0
  SERPINA1 WILD-TYPE     51     61     72    102     39     59
D431V7, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                3                 61
  CLUS_3                0                 72
  CLUS_4                2                102
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINA1 MUTATED        4      2      1
  SERPINA1 WILD-TYPE    213     73     98
D431V8, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                4                213
  CLUS_2                2                 73
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINA1 MUTATED        1      2      0
  SERPINA1 WILD-TYPE    120    106     72
D431V9, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                1                120
  CLUS_2                2                106
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINA1 MUTATED        2      0      0      0      1
  SERPINA1 WILD-TYPE     86     66     45     55     46
D431V10, multiclass
        clus
vv       SERPINA1 MUTATED SERPINA1 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                0                 66
  CLUS_3                0                 45
  CLUS_4                0                 55
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(432) Variable = KIAA1632 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1632 MUTATED        6     19      2      0
  KIAA1632 WILD-TYPE    198    118     45      3
D432V1, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                6                198
  CLUS_2               19                118
  CLUS_3                2                 45
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1632 MUTATED        3     14      1      2      2
  KIAA1632 WILD-TYPE     36     82     43     86     78
D432V2, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                3                 36
  CLUS_2               14                 82
  CLUS_3                1                 43
  CLUS_4                2                 86
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1632 MUTATED        1      5      8      2      5
  KIAA1632 WILD-TYPE     25     74     65     80     53
D432V3, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                5                 74
  CLUS_3                8                 65
  CLUS_4                2                 80
  CLUS_5                5                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1632 MUTATED        5     10      3      3
  KIAA1632 WILD-TYPE    122     41     68     66
D432V4, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                5                122
  CLUS_2               10                 41
  CLUS_3                3                 68
  CLUS_4                3                 66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1632 MUTATED        3      6     10      6      2
  KIAA1632 WILD-TYPE     81     79     75     63     45
D432V5, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                3                 81
  CLUS_2                6                 79
  CLUS_3               10                 75
  CLUS_4                6                 63
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1632 MUTATED       10      6      3      8
  KIAA1632 WILD-TYPE     85     68    118     72
D432V6, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1               10                 85
  CLUS_2                6                 68
  CLUS_3                3                118
  CLUS_4                8                 72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1632 MUTATED        4      9      3      6      4      1
  KIAA1632 WILD-TYPE     48     55     69     98     36     58
D432V7, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                9                 55
  CLUS_3                3                 69
  CLUS_4                6                 98
  CLUS_5                4                 36
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1632 MUTATED       18      5      4
  KIAA1632 WILD-TYPE    199     70     95
D432V8, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1               18                199
  CLUS_2                5                 70
  CLUS_3                4                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1632 MUTATED       12      3      6
  KIAA1632 WILD-TYPE    109    105     66
D432V9, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1               12                109
  CLUS_2                3                105
  CLUS_3                6                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1632 MUTATED        9      2      4      0      6
  KIAA1632 WILD-TYPE     79     64     41     55     41
D432V10, multiclass
        clus
vv       KIAA1632 MUTATED KIAA1632 WILD-TYPE
  CLUS_1                9                 79
  CLUS_2                2                 64
  CLUS_3                4                 41
  CLUS_4                0                 55
  CLUS_5                6                 41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(433) Variable = CCDC138 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC138 MUTATED        2      6      2      0
  CCDC138 WILD-TYPE    202    131     45      3
D433V1, multiclass
        clus
vv       CCDC138 MUTATED CCDC138 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               6               131
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC138 MUTATED        1      3      1      2      1
  CCDC138 WILD-TYPE     38     93     43     86     79
D433V2, multiclass
        clus
vv       CCDC138 MUTATED CCDC138 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               3                93
  CLUS_3               1                43
  CLUS_4               2                86
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC138 MUTATED        1      5      1      0      2
  CCDC138 WILD-TYPE     25     74     72     82     56
D433V3, multiclass
        clus
vv       CCDC138 MUTATED CCDC138 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               5                74
  CLUS_3               1                72
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC138 MUTATED        1      3      5      0
  CCDC138 WILD-TYPE    126     48     66     69
D433V4, multiclass
        clus
vv       CCDC138 MUTATED CCDC138 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               3                48
  CLUS_3               5                66
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC138 MUTATED        1      1      6      1      1
  CCDC138 WILD-TYPE     83     84     79     68     46
D433V5, multiclass
        clus
vv       CCDC138 MUTATED CCDC138 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               6                79
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC138 MUTATED        2      1      2      5
  CCDC138 WILD-TYPE     93     73    119     75
D433V6, multiclass
        clus
vv       CCDC138 MUTATED CCDC138 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               2               119
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC138 MUTATED        2      4      1      1      1      1
  CCDC138 WILD-TYPE     50     60     71    103     39     58
D433V7, multiclass
        clus
vv       CCDC138 MUTATED CCDC138 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               4                60
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC138 MUTATED        8      0      2
  CCDC138 WILD-TYPE    209     75     97
D433V8, multiclass
        clus
vv       CCDC138 MUTATED CCDC138 WILD-TYPE
  CLUS_1               8               209
  CLUS_2               0                75
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC138 MUTATED        2      1      4
  CCDC138 WILD-TYPE    119    107     68
D433V9, multiclass
        clus
vv       CCDC138 MUTATED CCDC138 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               1               107
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC138 MUTATED        2      0      3      0      2
  CCDC138 WILD-TYPE     86     66     42     55     45
D433V10, multiclass
        clus
vv       CCDC138 MUTATED CCDC138 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               3                42
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(434) Variable = ALDH3A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH3A1 MUTATED        2      8      2      0
  ALDH3A1 WILD-TYPE    202    129     45      3
D434V1, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               8               129
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALDH3A1 MUTATED        1      5      1      0      1
  ALDH3A1 WILD-TYPE     38     91     43     88     79
D434V2, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               5                91
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALDH3A1 MUTATED        0      6      2      0      4
  ALDH3A1 WILD-TYPE     26     73     71     82     54
D434V3, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               6                73
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               4                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH3A1 MUTATED        3      5      4      0
  ALDH3A1 WILD-TYPE    124     46     67     69
D434V4, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               5                46
  CLUS_3               4                67
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALDH3A1 MUTATED        0      2      8      1      1
  ALDH3A1 WILD-TYPE     84     83     77     68     46
D434V5, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3               8                77
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH3A1 MUTATED        3      1      1      7
  ALDH3A1 WILD-TYPE     92     73    120     73
D434V6, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               7                73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ALDH3A1 MUTATED        1      5      3      3      0      0
  ALDH3A1 WILD-TYPE     51     59     69    101     40     59
D434V7, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               5                59
  CLUS_3               3                69
  CLUS_4               3               101
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ALDH3A1 MUTATED       10      1      1
  ALDH3A1 WILD-TYPE    207     74     98
D434V8, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1              10               207
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ALDH3A1 MUTATED        3      1      3
  ALDH3A1 WILD-TYPE    118    107     69
D434V9, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               1               107
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALDH3A1 MUTATED        3      0      1      0      3
  ALDH3A1 WILD-TYPE     85     66     44     55     44
D434V10, multiclass
        clus
vv       ALDH3A1 MUTATED ALDH3A1 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(435) Variable = PAMR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAMR1 MUTATED        3     10      2      0
  PAMR1 WILD-TYPE    201    127     45      3
D435V1, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            10             127
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAMR1 MUTATED        0      5      1      1      1
  PAMR1 WILD-TYPE     39     91     43     87     79
D435V2, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAMR1 MUTATED        0      5      7      1      2
  PAMR1 WILD-TYPE     26     74     66     81     56
D435V3, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             5              74
  CLUS_3             7              66
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAMR1 MUTATED        4      8      2      1
  PAMR1 WILD-TYPE    123     43     69     68
D435V4, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             8              43
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAMR1 MUTATED        2      2      6      2      3
  PAMR1 WILD-TYPE     82     83     79     67     44
D435V5, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             2              83
  CLUS_3             6              79
  CLUS_4             2              67
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAMR1 MUTATED        3      3      4      5
  PAMR1 WILD-TYPE     92     71    117     75
D435V6, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             3              71
  CLUS_3             4             117
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAMR1 MUTATED        3      7      1      3      1      0
  PAMR1 WILD-TYPE     49     57     71    101     39     59
D435V7, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             7              57
  CLUS_3             1              71
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAMR1 MUTATED       13      1      1
  PAMR1 WILD-TYPE    204     74     98
D435V8, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1            13             204
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAMR1 MUTATED        3      2      2
  PAMR1 WILD-TYPE    118    106     70
D435V9, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAMR1 MUTATED        3      1      2      0      1
  PAMR1 WILD-TYPE     85     65     43     55     46
D435V10, multiclass
        clus
vv       PAMR1 MUTATED PAMR1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(436) Variable = ZNF776 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF776 MUTATED        0      8      0      0
  ZNF776 WILD-TYPE    204    129     47      3
D436V1, multiclass
        clus
vv       ZNF776 MUTATED ZNF776 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              8              129
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF776 MUTATED        0      4      1      0      1
  ZNF776 WILD-TYPE     39     92     43     88     79
D436V2, multiclass
        clus
vv       ZNF776 MUTATED ZNF776 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF776 MUTATED        0      3      2      2      1
  ZNF776 WILD-TYPE     26     76     71     80     57
D436V3, multiclass
        clus
vv       ZNF776 MUTATED ZNF776 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              2               71
  CLUS_4              2               80
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF776 MUTATED        0      3      3      2
  ZNF776 WILD-TYPE    127     48     68     67
D436V4, multiclass
        clus
vv       ZNF776 MUTATED ZNF776 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              3               48
  CLUS_3              3               68
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF776 MUTATED        0      1      5      1      0
  ZNF776 WILD-TYPE     84     84     80     68     47
D436V5, multiclass
        clus
vv       ZNF776 MUTATED ZNF776 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              5               80
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF776 MUTATED        2      2      1      2
  ZNF776 WILD-TYPE     93     72    120     78
D436V6, multiclass
        clus
vv       ZNF776 MUTATED ZNF776 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF776 MUTATED        1      3      1      2      1      0
  ZNF776 WILD-TYPE     51     61     71    102     39     59
D436V7, multiclass
        clus
vv       ZNF776 MUTATED ZNF776 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF776 MUTATED        4      4      0
  ZNF776 WILD-TYPE    213     71     99
D436V8, multiclass
        clus
vv       ZNF776 MUTATED ZNF776 WILD-TYPE
  CLUS_1              4              213
  CLUS_2              4               71
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF776 MUTATED        2      0      4
  ZNF776 WILD-TYPE    119    108     68
D436V9, multiclass
        clus
vv       ZNF776 MUTATED ZNF776 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF776 MUTATED        2      1      2      0      1
  ZNF776 WILD-TYPE     86     65     43     55     46
D436V10, multiclass
        clus
vv       ZNF776 MUTATED ZNF776 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(437) Variable = SH2B1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH2B1 MUTATED        0      9      1      0
  SH2B1 WILD-TYPE    204    128     46      3
D437V1, multiclass
        clus
vv       SH2B1 MUTATED SH2B1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             9             128
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH2B1 MUTATED        0      7      1      0      1
  SH2B1 WILD-TYPE     39     89     43     88     79
D437V2, multiclass
        clus
vv       SH2B1 MUTATED SH2B1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              89
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH2B1 MUTATED        0      5      3      0      1
  SH2B1 WILD-TYPE     26     74     70     82     57
D437V3, multiclass
        clus
vv       SH2B1 MUTATED SH2B1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             5              74
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH2B1 MUTATED        0      5      3      1
  SH2B1 WILD-TYPE    127     46     68     68
D437V4, multiclass
        clus
vv       SH2B1 MUTATED SH2B1 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             5              46
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH2B1 MUTATED        0      1      8      0      1
  SH2B1 WILD-TYPE     84     84     77     69     46
D437V5, multiclass
        clus
vv       SH2B1 MUTATED SH2B1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             8              77
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH2B1 MUTATED        2      1      1      6
  SH2B1 WILD-TYPE     93     73    120     74
D437V6, multiclass
        clus
vv       SH2B1 MUTATED SH2B1 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SH2B1 MUTATED        4      5      1      0      1      0
  SH2B1 WILD-TYPE     48     59     71    104     39     59
D437V7, multiclass
        clus
vv       SH2B1 MUTATED SH2B1 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             5              59
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SH2B1 MUTATED        8      1      2
  SH2B1 WILD-TYPE    209     74     97
D437V8, multiclass
        clus
vv       SH2B1 MUTATED SH2B1 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SH2B1 MUTATED        4      0      4
  SH2B1 WILD-TYPE    117    108     68
D437V9, multiclass
        clus
vv       SH2B1 MUTATED SH2B1 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH2B1 MUTATED        1      0      3      0      4
  SH2B1 WILD-TYPE     87     66     42     55     43
D437V10, multiclass
        clus
vv       SH2B1 MUTATED SH2B1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(438) Variable = GPR82 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR82 MUTATED        2      6      1      0
  GPR82 WILD-TYPE    202    131     46      3
D438V1, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             6             131
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR82 MUTATED        1      6      1      1      0
  GPR82 WILD-TYPE     38     90     43     87     80
D438V2, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR82 MUTATED        0      2      3      0      3
  GPR82 WILD-TYPE     26     77     70     82     55
D438V3, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR82 MUTATED        1      5      2      0
  GPR82 WILD-TYPE    126     46     69     69
D438V4, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR82 MUTATED        1      0      6      1      0
  GPR82 WILD-TYPE     83     85     79     68     47
D438V5, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR82 MUTATED        2      0      1      5
  GPR82 WILD-TYPE     93     74    120     75
D438V6, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR82 MUTATED        4      1      2      1      0      1
  GPR82 WILD-TYPE     48     63     70    103     40     58
D438V7, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             1              63
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR82 MUTATED        7      1      1
  GPR82 WILD-TYPE    210     74     98
D438V8, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR82 MUTATED        3      1      3
  GPR82 WILD-TYPE    118    107     69
D438V9, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR82 MUTATED        3      1      1      0      2
  GPR82 WILD-TYPE     85     65     44     55     45
D438V10, multiclass
        clus
vv       GPR82 MUTATED GPR82 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(439) Variable = ANK3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANK3 MUTATED       11     33      3      0
  ANK3 WILD-TYPE    193    104     44      3
D439V1, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1           11            193
  CLUS_2           33            104
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANK3 MUTATED        5     18      5      5      4
  ANK3 WILD-TYPE     34     78     39     83     76
D439V2, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            5             34
  CLUS_2           18             78
  CLUS_3            5             39
  CLUS_4            5             83
  CLUS_5            4             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANK3 MUTATED        3     12      8      1     11
  ANK3 WILD-TYPE     23     67     65     81     47
D439V3, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            3             23
  CLUS_2           12             67
  CLUS_3            8             65
  CLUS_4            1             81
  CLUS_5           11             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANK3 MUTATED       11     12      9      3
  ANK3 WILD-TYPE    116     39     62     66
D439V4, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1           11            116
  CLUS_2           12             39
  CLUS_3            9             62
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANK3 MUTATED        7      5     21      9      4
  ANK3 WILD-TYPE     77     80     64     60     43
D439V5, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1            7             77
  CLUS_2            5             80
  CLUS_3           21             64
  CLUS_4            9             60
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANK3 MUTATED       15      4     10     17
  ANK3 WILD-TYPE     80     70    111     63
D439V6, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1           15             80
  CLUS_2            4             70
  CLUS_3           10            111
  CLUS_4           17             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANK3 MUTATED       11     17      8      2      4      5
  ANK3 WILD-TYPE     41     47     64    102     36     54
D439V7, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1           11             41
  CLUS_2           17             47
  CLUS_3            8             64
  CLUS_4            2            102
  CLUS_5            4             36
  CLUS_6            5             54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ANK3 MUTATED       34      3     10
  ANK3 WILD-TYPE    183     72     89
D439V8, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1           34            183
  CLUS_2            3             72
  CLUS_3           10             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ANK3 MUTATED       18      6     10
  ANK3 WILD-TYPE    103    102     62
D439V9, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1           18            103
  CLUS_2            6            102
  CLUS_3           10             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANK3 MUTATED       11      1      6      5     11
  ANK3 WILD-TYPE     77     65     39     50     36
D439V10, multiclass
        clus
vv       ANK3 MUTATED ANK3 WILD-TYPE
  CLUS_1           11             77
  CLUS_2            1             65
  CLUS_3            6             39
  CLUS_4            5             50
  CLUS_5           11             36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(440) Variable = MLH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLH1 MUTATED        0      6      1      0
  MLH1 WILD-TYPE    204    131     46      3
D440V1, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            6            131
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLH1 MUTATED        2      1      1      0      2
  MLH1 WILD-TYPE     37     95     43     88     78
D440V2, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            1             95
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLH1 MUTATED        0      5      1      0      0
  MLH1 WILD-TYPE     26     74     72     82     58
D440V3, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            5             74
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLH1 MUTATED        1      0      5      0
  MLH1 WILD-TYPE    126     51     66     69
D440V4, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            0             51
  CLUS_3            5             66
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLH1 MUTATED        0      1      4      2      1
  MLH1 WILD-TYPE     84     84     81     67     46
D440V5, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            4             81
  CLUS_4            2             67
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLH1 MUTATED        3      2      1      2
  MLH1 WILD-TYPE     92     72    120     78
D440V6, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            2             72
  CLUS_3            1            120
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLH1 MUTATED        1      5      2      0      0      0
  MLH1 WILD-TYPE     51     59     70    104     40     59
D440V7, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            5             59
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLH1 MUTATED        7      1      0
  MLH1 WILD-TYPE    210     74     99
D440V8, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MLH1 MUTATED        3      0      3
  MLH1 WILD-TYPE    118    108     69
D440V9, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLH1 MUTATED        1      0      2      0      3
  MLH1 WILD-TYPE     87     66     43     55     44
D440V10, multiclass
        clus
vv       MLH1 MUTATED MLH1 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(441) Variable = BCKDHA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCKDHA MUTATED        1      5      3      0
  BCKDHA WILD-TYPE    203    132     44      3
D441V1, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              1              203
  CLUS_2              5              132
  CLUS_3              3               44
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCKDHA MUTATED        2      4      0      1      1
  BCKDHA WILD-TYPE     37     92     44     87     79
D441V2, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              2               37
  CLUS_2              4               92
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCKDHA MUTATED        0      4      3      0      2
  BCKDHA WILD-TYPE     26     75     70     82     56
D441V3, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCKDHA MUTATED        2      3      3      1
  BCKDHA WILD-TYPE    125     48     68     68
D441V4, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              2              125
  CLUS_2              3               48
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCKDHA MUTATED        1      1      5      0      2
  BCKDHA WILD-TYPE     83     84     80     69     45
D441V5, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              5               80
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BCKDHA MUTATED        2      3      0      4
  BCKDHA WILD-TYPE     93     71    121     76
D441V6, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              2               93
  CLUS_2              3               71
  CLUS_3              0              121
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BCKDHA MUTATED        1      5      0      2      1      1
  BCKDHA WILD-TYPE     51     59     72    102     39     58
D441V7, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              1               51
  CLUS_2              5               59
  CLUS_3              0               72
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCKDHA MUTATED        7      0      3
  BCKDHA WILD-TYPE    210     75     96
D441V8, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              7              210
  CLUS_2              0               75
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BCKDHA MUTATED        2      2      3
  BCKDHA WILD-TYPE    119    106     69
D441V9, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              2              119
  CLUS_2              2              106
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BCKDHA MUTATED        1      0      2      2      2
  BCKDHA WILD-TYPE     87     66     43     53     45
D441V10, multiclass
        clus
vv       BCKDHA MUTATED BCKDHA WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              2               53
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(442) Variable = MMP10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP10 MUTATED        0      8      1      0
  MMP10 WILD-TYPE    204    129     46      3
D442V1, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP10 MUTATED        1      5      1      0      1
  MMP10 WILD-TYPE     38     91     43     88     79
D442V2, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP10 MUTATED        2      4      0      0      2
  MMP10 WILD-TYPE     24     75     73     82     56
D442V3, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             4              75
  CLUS_3             0              73
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP10 MUTATED        2      2      4      0
  MMP10 WILD-TYPE    125     49     67     69
D442V4, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             2              49
  CLUS_3             4              67
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP10 MUTATED        1      1      4      1      1
  MMP10 WILD-TYPE     83     84     81     68     46
D442V5, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MMP10 MUTATED        2      0      1      5
  MMP10 WILD-TYPE     93     74    120     75
D442V6, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MMP10 MUTATED        3      2      1      2      0      1
  MMP10 WILD-TYPE     49     62     71    102     40     58
D442V7, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP10 MUTATED        8      0      1
  MMP10 WILD-TYPE    209     75     98
D442V8, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MMP10 MUTATED        3      2      2
  MMP10 WILD-TYPE    118    106     70
D442V9, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MMP10 MUTATED        3      0      2      0      2
  MMP10 WILD-TYPE     85     66     43     55     45
D442V10, multiclass
        clus
vv       MMP10 MUTATED MMP10 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(443) Variable = HAX1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAX1 MUTATED        0      5      0      0
  HAX1 WILD-TYPE    204    132     47      3
D443V1, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            5            132
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAX1 MUTATED        0      3      1      0      1
  HAX1 WILD-TYPE     39     93     43     88     79
D443V2, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAX1 MUTATED        1      0      1      1      1
  HAX1 WILD-TYPE     25     79     72     81     57
D443V3, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             79
  CLUS_3            1             72
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAX1 MUTATED        2      1      0      1
  HAX1 WILD-TYPE    125     50     71     68
D443V4, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            1             50
  CLUS_3            0             71
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAX1 MUTATED        0      0      4      1      0
  HAX1 WILD-TYPE     84     85     81     68     47
D443V5, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            4             81
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAX1 MUTATED        1      1      1      2
  HAX1 WILD-TYPE     94     73    120     78
D443V6, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HAX1 MUTATED        2      2      0      0      1      0
  HAX1 WILD-TYPE     50     62     72    104     39     59
D443V7, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            2             62
  CLUS_3            0             72
  CLUS_4            0            104
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HAX1 MUTATED        4      1      0
  HAX1 WILD-TYPE    213     74     99
D443V8, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            4            213
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HAX1 MUTATED        3      0      2
  HAX1 WILD-TYPE    118    108     70
D443V9, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAX1 MUTATED        3      0      1      0      1
  HAX1 WILD-TYPE     85     66     44     55     46
D443V10, multiclass
        clus
vv       HAX1 MUTATED HAX1 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(444) Variable = ULK2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ULK2 MUTATED        4      6      1      0
  ULK2 WILD-TYPE    200    131     46      3
D444V1, multiclass
        clus
vv       ULK2 MUTATED ULK2 WILD-TYPE
  CLUS_1            4            200
  CLUS_2            6            131
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ULK2 MUTATED        1      6      1      1      1
  ULK2 WILD-TYPE     38     90     43     87     79
D444V2, multiclass
        clus
vv       ULK2 MUTATED ULK2 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            6             90
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ULK2 MUTATED        0      4      3      1      1
  ULK2 WILD-TYPE     26     75     70     81     57
D444V3, multiclass
        clus
vv       ULK2 MUTATED ULK2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ULK2 MUTATED        2      3      4      0
  ULK2 WILD-TYPE    125     48     67     69
D444V4, multiclass
        clus
vv       ULK2 MUTATED ULK2 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            3             48
  CLUS_3            4             67
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ULK2 MUTATED        1      1      5      2      0
  ULK2 WILD-TYPE     83     84     80     67     47
D444V5, multiclass
        clus
vv       ULK2 MUTATED ULK2 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            1             84
  CLUS_3            5             80
  CLUS_4            2             67
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ULK2 MUTATED        4      1      1      3
  ULK2 WILD-TYPE     91     73    120     77
D444V6, multiclass
        clus
vv       ULK2 MUTATED ULK2 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ULK2 MUTATED        0      2      3      4      1      1
  ULK2 WILD-TYPE     52     62     69    100     39     58
D444V7, multiclass
        clus
vv       ULK2 MUTATED ULK2 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            2             62
  CLUS_3            3             69
  CLUS_4            4            100
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ULK2 MUTATED        6      3      2
  ULK2 WILD-TYPE    211     72     97
D444V8, multiclass
        clus
vv       ULK2 MUTATED ULK2 WILD-TYPE
  CLUS_1            6            211
  CLUS_2            3             72
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ULK2 MUTATED        2      2      5
  ULK2 WILD-TYPE    119    106     67
D444V9, multiclass
        clus
vv       ULK2 MUTATED ULK2 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            2            106
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ULK2 MUTATED        1      3      1      0      4
  ULK2 WILD-TYPE     87     63     44     55     43
D444V10, multiclass
        clus
vv       ULK2 MUTATED ULK2 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            3             63
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(445) Variable = C11ORF70 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF70 MUTATED        1      2      1      0
  C11ORF70 WILD-TYPE    203    135     46      3
D445V1, multiclass
        clus
vv       C11ORF70 MUTATED C11ORF70 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                2                135
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF70 MUTATED        0      3      1      0      0
  C11ORF70 WILD-TYPE     39     93     43     88     80
D445V2, multiclass
        clus
vv       C11ORF70 MUTATED C11ORF70 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                3                 93
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF70 MUTATED        0      2      1      0      1
  C11ORF70 WILD-TYPE     26     77     72     82     57
D445V3, multiclass
        clus
vv       C11ORF70 MUTATED C11ORF70 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                2                 77
  CLUS_3                1                 72
  CLUS_4                0                 82
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF70 MUTATED        0      3      1      0
  C11ORF70 WILD-TYPE    127     48     70     69
D445V4, multiclass
        clus
vv       C11ORF70 MUTATED C11ORF70 WILD-TYPE
  CLUS_1                0                127
  CLUS_2                3                 48
  CLUS_3                1                 70
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF70 MUTATED        0      0      4      0      0
  C11ORF70 WILD-TYPE     84     85     81     69     47
D445V5, multiclass
        clus
vv       C11ORF70 MUTATED C11ORF70 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                0                 85
  CLUS_3                4                 81
  CLUS_4                0                 69
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF70 MUTATED        0      1      0      3
  C11ORF70 WILD-TYPE     95     73    121     77
D445V6, multiclass
        clus
vv       C11ORF70 MUTATED C11ORF70 WILD-TYPE
  CLUS_1                0                 95
  CLUS_2                1                 73
  CLUS_3                0                121
  CLUS_4                3                 77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C11ORF70 MUTATED        1      1      2      0      0      0
  C11ORF70 WILD-TYPE     51     63     70    104     40     59
D445V7, multiclass
        clus
vv       C11ORF70 MUTATED C11ORF70 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                1                 63
  CLUS_3                2                 70
  CLUS_4                0                104
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF70 MUTATED        4      0      0
  C11ORF70 WILD-TYPE    213     75     99
D445V8, multiclass
        clus
vv       C11ORF70 MUTATED C11ORF70 WILD-TYPE
  CLUS_1                4                213
  CLUS_2                0                 75
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF70 MUTATED        1      0      2
  C11ORF70 WILD-TYPE    120    108     70
D445V9, multiclass
        clus
vv       C11ORF70 MUTATED C11ORF70 WILD-TYPE
  CLUS_1                1                120
  CLUS_2                0                108
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF70 MUTATED        1      0      1      0      1
  C11ORF70 WILD-TYPE     87     66     44     55     46
D445V10, multiclass
        clus
vv       C11ORF70 MUTATED C11ORF70 WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                0                 66
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(446) Variable = AKAP11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP11 MUTATED        3     10      2      0
  AKAP11 WILD-TYPE    201    127     45      3
D446V1, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             10              127
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP11 MUTATED        1      6      1      2      1
  AKAP11 WILD-TYPE     38     90     43     86     79
D446V2, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               90
  CLUS_3              1               43
  CLUS_4              2               86
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP11 MUTATED        1      5      6      1      1
  AKAP11 WILD-TYPE     25     74     67     81     57
D446V3, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              5               74
  CLUS_3              6               67
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP11 MUTATED        4      6      3      1
  AKAP11 WILD-TYPE    123     45     68     68
D446V4, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              6               45
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP11 MUTATED        1      3      5      1      4
  AKAP11 WILD-TYPE     83     82     80     68     43
D446V5, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               82
  CLUS_3              5               80
  CLUS_4              1               68
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP11 MUTATED        2      1      2      9
  AKAP11 WILD-TYPE     93     73    119     71
D446V6, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              9               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AKAP11 MUTATED        4      5      2      2      1      1
  AKAP11 WILD-TYPE     48     59     70    102     39     58
D446V7, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              5               59
  CLUS_3              2               70
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP11 MUTATED       12      1      2
  AKAP11 WILD-TYPE    205     74     97
D446V8, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1             12              205
  CLUS_2              1               74
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP11 MUTATED        5      1      3
  AKAP11 WILD-TYPE    116    107     69
D446V9, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP11 MUTATED        1      0      2      1      5
  AKAP11 WILD-TYPE     87     66     43     54     42
D446V10, multiclass
        clus
vv       AKAP11 MUTATED AKAP11 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(447) Variable = MAN1C1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAN1C1 MUTATED        1      7      1      0
  MAN1C1 WILD-TYPE    203    130     46      3
D447V1, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              7              130
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAN1C1 MUTATED        0      5      3      0      0
  MAN1C1 WILD-TYPE     39     91     41     88     80
D447V2, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              3               41
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAN1C1 MUTATED        1      1      2      1      2
  MAN1C1 WILD-TYPE     25     78     71     81     56
D447V3, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAN1C1 MUTATED        1      4      1      1
  MAN1C1 WILD-TYPE    126     47     70     68
D447V4, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              4               47
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAN1C1 MUTATED        0      3      4      2      1
  MAN1C1 WILD-TYPE     84     82     81     67     46
D447V5, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3              4               81
  CLUS_4              2               67
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAN1C1 MUTATED        2      1      1      6
  MAN1C1 WILD-TYPE     93     73    120     74
D447V6, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAN1C1 MUTATED        3      4      1      2      0      0
  MAN1C1 WILD-TYPE     49     60     71    102     40     59
D447V7, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAN1C1 MUTATED        9      1      0
  MAN1C1 WILD-TYPE    208     74     99
D447V8, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAN1C1 MUTATED        3      1      4
  MAN1C1 WILD-TYPE    118    107     68
D447V9, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              1              107
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAN1C1 MUTATED        2      0      2      0      4
  MAN1C1 WILD-TYPE     86     66     43     55     43
D447V10, multiclass
        clus
vv       MAN1C1 MUTATED MAN1C1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(448) Variable = KCTD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD3 MUTATED        3     10      1      0
  KCTD3 WILD-TYPE    201    127     46      3
D448V1, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            10             127
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD3 MUTATED        1      7      1      1      0
  KCTD3 WILD-TYPE     38     89     43     87     80
D448V2, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             7              89
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD3 MUTATED        0      2      2      3      5
  KCTD3 WILD-TYPE     26     77     71     79     53
D448V3, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             2              71
  CLUS_4             3              79
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD3 MUTATED        1      8      0      3
  KCTD3 WILD-TYPE    126     43     71     66
D448V4, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             8              43
  CLUS_3             0              71
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD3 MUTATED        1      3      4      3      1
  KCTD3 WILD-TYPE     83     82     81     66     46
D448V5, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             4              81
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD3 MUTATED        5      2      2      3
  KCTD3 WILD-TYPE     90     72    119     77
D448V6, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCTD3 MUTATED        3      4      3      3      1      0
  KCTD3 WILD-TYPE     49     60     69    101     39     59
D448V7, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             4              60
  CLUS_3             3              69
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD3 MUTATED       10      1      3
  KCTD3 WILD-TYPE    207     74     96
D448V8, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             1              74
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD3 MUTATED        3      3      3
  KCTD3 WILD-TYPE    118    105     69
D448V9, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             3             105
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD3 MUTATED        3      1      2      1      2
  KCTD3 WILD-TYPE     85     65     43     54     45
D448V10, multiclass
        clus
vv       KCTD3 MUTATED KCTD3 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(449) Variable = RALGAPB MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALGAPB MUTATED        3     11      3      0
  RALGAPB WILD-TYPE    201    126     44      3
D449V1, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               3               201
  CLUS_2              11               126
  CLUS_3               3                44
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RALGAPB MUTATED        4      7      1      1      0
  RALGAPB WILD-TYPE     35     89     43     87     80
D449V2, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               4                35
  CLUS_2               7                89
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RALGAPB MUTATED        1      8      4      1      1
  RALGAPB WILD-TYPE     25     71     69     81     57
D449V3, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               1                25
  CLUS_2               8                71
  CLUS_3               4                69
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALGAPB MUTATED        1      9      4      1
  RALGAPB WILD-TYPE    126     42     67     68
D449V4, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               1               126
  CLUS_2               9                42
  CLUS_3               4                67
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RALGAPB MUTATED        3      4      4      2      2
  RALGAPB WILD-TYPE     81     81     81     67     45
D449V5, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               3                81
  CLUS_2               4                81
  CLUS_3               4                81
  CLUS_4               2                67
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RALGAPB MUTATED        3      3      2      7
  RALGAPB WILD-TYPE     92     71    119     73
D449V6, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               3                92
  CLUS_2               3                71
  CLUS_3               2               119
  CLUS_4               7                73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RALGAPB MUTATED        6      3      2      3      1      2
  RALGAPB WILD-TYPE     46     61     70    101     39     57
D449V7, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               6                46
  CLUS_2               3                61
  CLUS_3               2                70
  CLUS_4               3               101
  CLUS_5               1                39
  CLUS_6               2                57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RALGAPB MUTATED       12      3      2
  RALGAPB WILD-TYPE    205     72     97
D449V8, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1              12               205
  CLUS_2               3                72
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RALGAPB MUTATED        5      2      3
  RALGAPB WILD-TYPE    116    106     69
D449V9, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               5               116
  CLUS_2               2               106
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RALGAPB MUTATED        3      2      1      1      3
  RALGAPB WILD-TYPE     85     64     44     54     44
D449V10, multiclass
        clus
vv       RALGAPB MUTATED RALGAPB WILD-TYPE
  CLUS_1               3                85
  CLUS_2               2                64
  CLUS_3               1                44
  CLUS_4               1                54
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(450) Variable = CRYGA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYGA MUTATED        2      8      1      0
  CRYGA WILD-TYPE    202    129     46      3
D450V1, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             2             202
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRYGA MUTATED        1      7      1      0      2
  CRYGA WILD-TYPE     38     89     43     88     78
D450V2, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             1              38
  CLUS_2             7              89
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRYGA MUTATED        1      3      4      0      1
  CRYGA WILD-TYPE     25     76     69     82     57
D450V3, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYGA MUTATED        2      5      2      0
  CRYGA WILD-TYPE    125     46     69     69
D450V4, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             2             125
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRYGA MUTATED        1      2      6      1      0
  CRYGA WILD-TYPE     83     83     79     68     47
D450V5, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYGA MUTATED        2      2      2      4
  CRYGA WILD-TYPE     93     72    119     76
D450V6, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CRYGA MUTATED        2      3      4      2      0      0
  CRYGA WILD-TYPE     50     61     68    102     40     59
D450V7, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             4              68
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CRYGA MUTATED        8      2      1
  CRYGA WILD-TYPE    209     73     98
D450V8, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             8             209
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CRYGA MUTATED        4      2      3
  CRYGA WILD-TYPE    117    106     69
D450V9, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             4             117
  CLUS_2             2             106
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRYGA MUTATED        2      2      2      0      3
  CRYGA WILD-TYPE     86     64     43     55     44
D450V10, multiclass
        clus
vv       CRYGA MUTATED CRYGA WILD-TYPE
  CLUS_1             2              86
  CLUS_2             2              64
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(451) Variable = CROT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CROT MUTATED        2     12      1      0
  CROT WILD-TYPE    202    125     46      3
D451V1, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            2            202
  CLUS_2           12            125
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CROT MUTATED        1      7      3      0      2
  CROT WILD-TYPE     38     89     41     88     78
D451V2, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            1             38
  CLUS_2            7             89
  CLUS_3            3             41
  CLUS_4            0             88
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CROT MUTATED        1      5      4      0      4
  CROT WILD-TYPE     25     74     69     82     54
D451V3, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            1             25
  CLUS_2            5             74
  CLUS_3            4             69
  CLUS_4            0             82
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CROT MUTATED        3      9      2      0
  CROT WILD-TYPE    124     42     69     69
D451V4, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            3            124
  CLUS_2            9             42
  CLUS_3            2             69
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CROT MUTATED        0      1     10      2      1
  CROT WILD-TYPE     84     84     75     67     46
D451V5, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3           10             75
  CLUS_4            2             67
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CROT MUTATED        3      0      3      8
  CROT WILD-TYPE     92     74    118     72
D451V6, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            3             92
  CLUS_2            0             74
  CLUS_3            3            118
  CLUS_4            8             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CROT MUTATED        5      4      5      1      0      0
  CROT WILD-TYPE     47     60     67    103     40     59
D451V7, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            5             47
  CLUS_2            4             60
  CLUS_3            5             67
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CROT MUTATED       14      0      1
  CROT WILD-TYPE    203     75     98
D451V8, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1           14            203
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CROT MUTATED        6      1      3
  CROT WILD-TYPE    115    107     69
D451V9, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            6            115
  CLUS_2            1            107
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CROT MUTATED        1      0      2      1      6
  CROT WILD-TYPE     87     66     43     54     41
D451V10, multiclass
        clus
vv       CROT MUTATED CROT WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            1             54
  CLUS_5            6             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(452) Variable = MAP7D3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D3 MUTATED        2     14      2      0
  MAP7D3 WILD-TYPE    202    123     45      3
D452V1, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              2              202
  CLUS_2             14              123
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D3 MUTATED        2      5      3      2      2
  MAP7D3 WILD-TYPE     37     91     41     86     78
D452V2, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              5               91
  CLUS_3              3               41
  CLUS_4              2               86
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D3 MUTATED        0      4      2      2      8
  MAP7D3 WILD-TYPE     26     75     71     80     50
D452V3, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              2               71
  CLUS_4              2               80
  CLUS_5              8               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D3 MUTATED        1      8      4      3
  MAP7D3 WILD-TYPE    126     43     67     66
D452V4, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              8               43
  CLUS_3              4               67
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D3 MUTATED        2      7      6      1      2
  MAP7D3 WILD-TYPE     82     78     79     68     45
D452V5, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              7               78
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D3 MUTATED        2      4      2     10
  MAP7D3 WILD-TYPE     93     70    119     70
D452V6, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              4               70
  CLUS_3              2              119
  CLUS_4             10               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP7D3 MUTATED        2      7      3      3      1      2
  MAP7D3 WILD-TYPE     50     57     69    101     39     57
D452V7, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              7               57
  CLUS_3              3               69
  CLUS_4              3              101
  CLUS_5              1               39
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D3 MUTATED       14      2      2
  MAP7D3 WILD-TYPE    203     73     97
D452V8, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1             14              203
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D3 MUTATED        7      3      2
  MAP7D3 WILD-TYPE    114    105     70
D452V9, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              7              114
  CLUS_2              3              105
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D3 MUTATED        5      1      1      2      3
  MAP7D3 WILD-TYPE     83     65     44     53     44
D452V10, multiclass
        clus
vv       MAP7D3 MUTATED MAP7D3 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              2               53
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(453) Variable = ZFC3H1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFC3H1 MUTATED        5      9      2      0
  ZFC3H1 WILD-TYPE    199    128     45      3
D453V1, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              5              199
  CLUS_2              9              128
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFC3H1 MUTATED        2      8      0      1      1
  ZFC3H1 WILD-TYPE     37     88     44     87     79
D453V2, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              8               88
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFC3H1 MUTATED        1      1      3      4      5
  ZFC3H1 WILD-TYPE     25     78     70     78     53
D453V3, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              3               70
  CLUS_4              4               78
  CLUS_5              5               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFC3H1 MUTATED        5      7      0      2
  ZFC3H1 WILD-TYPE    122     44     71     67
D453V4, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              5              122
  CLUS_2              7               44
  CLUS_3              0               71
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFC3H1 MUTATED        1      4      8      2      0
  ZFC3H1 WILD-TYPE     83     81     77     67     47
D453V5, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              4               81
  CLUS_3              8               77
  CLUS_4              2               67
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFC3H1 MUTATED        3      1      3      8
  ZFC3H1 WILD-TYPE     92     73    118     72
D453V6, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              3              118
  CLUS_4              8               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFC3H1 MUTATED        4      5      3      2      1      1
  ZFC3H1 WILD-TYPE     48     59     69    102     39     58
D453V7, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              5               59
  CLUS_3              3               69
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZFC3H1 MUTATED       13      1      2
  ZFC3H1 WILD-TYPE    204     74     97
D453V8, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1             13              204
  CLUS_2              1               74
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZFC3H1 MUTATED        5      3      4
  ZFC3H1 WILD-TYPE    116    105     68
D453V9, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              3              105
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFC3H1 MUTATED        2      0      2      2      6
  ZFC3H1 WILD-TYPE     86     66     43     53     41
D453V10, multiclass
        clus
vv       ZFC3H1 MUTATED ZFC3H1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              2               53
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(454) Variable = NCOA7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA7 MUTATED        4     10      2      0
  NCOA7 WILD-TYPE    200    127     45      3
D454V1, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            10             127
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCOA7 MUTATED        1      6      1      3      1
  NCOA7 WILD-TYPE     38     90     43     85     79
D454V2, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             3              85
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCOA7 MUTATED        1      6      2      1      3
  NCOA7 WILD-TYPE     25     73     71     81     55
D454V3, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             6              73
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA7 MUTATED        2      5      5      1
  NCOA7 WILD-TYPE    125     46     66     68
D454V4, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             5              46
  CLUS_3             5              66
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCOA7 MUTATED        3      0      7      2      1
  NCOA7 WILD-TYPE     81     85     78     67     46
D454V5, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             0              85
  CLUS_3             7              78
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCOA7 MUTATED        6      2      2      3
  NCOA7 WILD-TYPE     89     72    119     77
D454V6, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NCOA7 MUTATED        3      7      3      1      1      1
  NCOA7 WILD-TYPE     49     57     69    103     39     58
D454V7, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             7              57
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA7 MUTATED       11      2      3
  NCOA7 WILD-TYPE    206     73     96
D454V8, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             2              73
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCOA7 MUTATED        4      1      6
  NCOA7 WILD-TYPE    117    107     66
D454V9, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCOA7 MUTATED        3      1      3      1      3
  NCOA7 WILD-TYPE     85     65     42     54     44
D454V10, multiclass
        clus
vv       NCOA7 MUTATED NCOA7 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(455) Variable = USP13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP13 MUTATED        2      7      3      0
  USP13 WILD-TYPE    202    130     44      3
D455V1, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             7             130
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP13 MUTATED        0      4      2      1      1
  USP13 WILD-TYPE     39     92     42     87     79
D455V2, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP13 MUTATED        0      5      3      0      1
  USP13 WILD-TYPE     26     74     70     82     57
D455V3, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             5              74
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP13 MUTATED        3      4      2      0
  USP13 WILD-TYPE    124     47     69     69
D455V4, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP13 MUTATED        1      0      6      2      2
  USP13 WILD-TYPE     83     85     79     67     45
D455V5, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             6              79
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP13 MUTATED        3      0      2      6
  USP13 WILD-TYPE     92     74    119     74
D455V6, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             0              74
  CLUS_3             2             119
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP13 MUTATED        2      6      1      1      1      1
  USP13 WILD-TYPE     50     58     71    103     39     58
D455V7, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             6              58
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP13 MUTATED       11      0      1
  USP13 WILD-TYPE    206     75     98
D455V8, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP13 MUTATED        5      2      1
  USP13 WILD-TYPE    116    106     71
D455V9, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             2             106
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP13 MUTATED        3      0      1      1      3
  USP13 WILD-TYPE     85     66     44     54     44
D455V10, multiclass
        clus
vv       USP13 MUTATED USP13 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(456) Variable = ICAM4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICAM4 MUTATED        2      5      1      0
  ICAM4 WILD-TYPE    202    132     46      3
D456V1, multiclass
        clus
vv       ICAM4 MUTATED ICAM4 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             5             132
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ICAM4 MUTATED        1      3      0      1      1
  ICAM4 WILD-TYPE     38     93     44     87     79
D456V2, multiclass
        clus
vv       ICAM4 MUTATED ICAM4 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ICAM4 MUTATED        0      4      1      0      1
  ICAM4 WILD-TYPE     26     75     72     82     57
D456V3, multiclass
        clus
vv       ICAM4 MUTATED ICAM4 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICAM4 MUTATED        1      2      3      0
  ICAM4 WILD-TYPE    126     49     68     69
D456V4, multiclass
        clus
vv       ICAM4 MUTATED ICAM4 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             2              49
  CLUS_3             3              68
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ICAM4 MUTATED        0      2      3      1      1
  ICAM4 WILD-TYPE     84     83     82     68     46
D456V5, multiclass
        clus
vv       ICAM4 MUTATED ICAM4 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICAM4 MUTATED        2      1      1      3
  ICAM4 WILD-TYPE     93     73    120     77
D456V6, multiclass
        clus
vv       ICAM4 MUTATED ICAM4 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ICAM4 MUTATED        1      4      1      1      1      0
  ICAM4 WILD-TYPE     51     60     71    103     39     59
D456V7, multiclass
        clus
vv       ICAM4 MUTATED ICAM4 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             4              60
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ICAM4 MUTATED        2      3      3
  ICAM4 WILD-TYPE    215     72     96
D456V8, multiclass
        clus
vv       ICAM4 MUTATED ICAM4 WILD-TYPE
  CLUS_1             2             215
  CLUS_2             3              72
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ICAM4 MUTATED        1      2      2
  ICAM4 WILD-TYPE    120    106     70
D456V9, multiclass
        clus
vv       ICAM4 MUTATED ICAM4 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ICAM4 MUTATED        1      1      1      1      1
  ICAM4 WILD-TYPE     87     65     44     54     46
D456V10, multiclass
        clus
vv       ICAM4 MUTATED ICAM4 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(457) Variable = USP15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP15 MUTATED        0      7      0      0
  USP15 WILD-TYPE    204    130     47      3
D457V1, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP15 MUTATED        0      2      2      0      2
  USP15 WILD-TYPE     39     94     42     88     78
D457V2, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             2              94
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP15 MUTATED        1      5      1      0      0
  USP15 WILD-TYPE     25     74     72     82     58
D457V3, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP15 MUTATED        1      4      2      0
  USP15 WILD-TYPE    126     47     69     69
D457V4, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP15 MUTATED        0      1      5      0      1
  USP15 WILD-TYPE     84     84     80     69     46
D457V5, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP15 MUTATED        0      1      2      4
  USP15 WILD-TYPE     95     73    119     76
D457V6, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP15 MUTATED        2      4      1      0      0      0
  USP15 WILD-TYPE     50     60     71    104     40     59
D457V7, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             4              60
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP15 MUTATED        5      1      1
  USP15 WILD-TYPE    212     74     98
D457V8, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP15 MUTATED        1      0      3
  USP15 WILD-TYPE    120    108     69
D457V9, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             0             108
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP15 MUTATED        0      0      3      0      1
  USP15 WILD-TYPE     88     66     42     55     46
D457V10, multiclass
        clus
vv       USP15 MUTATED USP15 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(458) Variable = FAM113B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM113B MUTATED        3     11      0      0
  FAM113B WILD-TYPE    201    126     47      3
D458V1, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               3               201
  CLUS_2              11               126
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM113B MUTATED        2      6      1      2      2
  FAM113B WILD-TYPE     37     90     43     86     78
D458V2, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               2                37
  CLUS_2               6                90
  CLUS_3               1                43
  CLUS_4               2                86
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM113B MUTATED        1      6      2      2      2
  FAM113B WILD-TYPE     25     73     71     80     56
D458V3, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               1                25
  CLUS_2               6                73
  CLUS_3               2                71
  CLUS_4               2                80
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM113B MUTATED        1      4      5      3
  FAM113B WILD-TYPE    126     47     66     66
D458V4, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               1               126
  CLUS_2               4                47
  CLUS_3               5                66
  CLUS_4               3                66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM113B MUTATED        0      2     10      1      1
  FAM113B WILD-TYPE     84     83     75     68     46
D458V5, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3              10                75
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM113B MUTATED        1      3      2      8
  FAM113B WILD-TYPE     94     71    119     72
D458V6, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               1                94
  CLUS_2               3                71
  CLUS_3               2               119
  CLUS_4               8                72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM113B MUTATED        2      6      2      3      2      0
  FAM113B WILD-TYPE     50     58     70    101     38     59
D458V7, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               2                50
  CLUS_2               6                58
  CLUS_3               2                70
  CLUS_4               3               101
  CLUS_5               2                38
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM113B MUTATED       12      2      1
  FAM113B WILD-TYPE    205     73     98
D458V8, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1              12               205
  CLUS_2               2                73
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM113B MUTATED        6      2      5
  FAM113B WILD-TYPE    115    106     67
D458V9, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               6               115
  CLUS_2               2               106
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM113B MUTATED        6      0      3      1      3
  FAM113B WILD-TYPE     82     66     42     54     44
D458V10, multiclass
        clus
vv       FAM113B MUTATED FAM113B WILD-TYPE
  CLUS_1               6                82
  CLUS_2               0                66
  CLUS_3               3                42
  CLUS_4               1                54
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(459) Variable = PCCA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCCA MUTATED        2     10      0      0
  PCCA WILD-TYPE    202    127     47      3
D459V1, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            2            202
  CLUS_2           10            127
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCCA MUTATED        0      7      1      1      1
  PCCA WILD-TYPE     39     89     43     87     79
D459V2, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            0             39
  CLUS_2            7             89
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCCA MUTATED        2      4      3      1      1
  PCCA WILD-TYPE     24     75     70     81     57
D459V3, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            2             24
  CLUS_2            4             75
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCCA MUTATED        3      4      4      0
  PCCA WILD-TYPE    124     47     67     69
D459V4, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            3            124
  CLUS_2            4             47
  CLUS_3            4             67
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCCA MUTATED        0      1      7      1      1
  PCCA WILD-TYPE     84     84     78     68     46
D459V5, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            7             78
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCCA MUTATED        4      0      1      5
  PCCA WILD-TYPE     91     74    120     75
D459V6, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            4             91
  CLUS_2            0             74
  CLUS_3            1            120
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCCA MUTATED        3      7      2      0      0      0
  PCCA WILD-TYPE     49     57     70    104     40     59
D459V7, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            3             49
  CLUS_2            7             57
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCCA MUTATED       11      0      1
  PCCA WILD-TYPE    206     75     98
D459V8, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1           11            206
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCCA MUTATED        4      1      5
  PCCA WILD-TYPE    117    107     67
D459V9, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            4            117
  CLUS_2            1            107
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCCA MUTATED        2      0      4      1      3
  PCCA WILD-TYPE     86     66     41     54     44
D459V10, multiclass
        clus
vv       PCCA MUTATED PCCA WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            4             41
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(460) Variable = P2RX1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RX1 MUTATED        0      4      0      0
  P2RX1 WILD-TYPE    204    133     47      3
D460V1, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             4             133
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RX1 MUTATED        0      2      2      0      0
  P2RX1 WILD-TYPE     39     94     42     88     80
D460V2, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             2              94
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RX1 MUTATED        0      2      0      0      1
  P2RX1 WILD-TYPE     26     77     73     82     57
D460V3, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             0              73
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RX1 MUTATED        0      2      1      0
  P2RX1 WILD-TYPE    127     49     70     69
D460V4, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             2              49
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RX1 MUTATED        0      0      2      1      0
  P2RX1 WILD-TYPE     84     85     83     68     47
D460V5, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             2              83
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RX1 MUTATED        1      1      0      1
  P2RX1 WILD-TYPE     94     73    121     79
D460V6, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  P2RX1 MUTATED        1      1      1      1      0      0
  P2RX1 WILD-TYPE     51     63     71    103     40     59
D460V7, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             1              63
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RX1 MUTATED        3      1      0
  P2RX1 WILD-TYPE    214     74     99
D460V8, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             3             214
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RX1 MUTATED        2      0      2
  P2RX1 WILD-TYPE    119    108     70
D460V9, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RX1 MUTATED        0      1      1      0      2
  P2RX1 WILD-TYPE     88     65     44     55     45
D460V10, multiclass
        clus
vv       P2RX1 MUTATED P2RX1 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(461) Variable = KIAA0649 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0649 MUTATED        3     14      1      0
  KIAA0649 WILD-TYPE    201    123     46      3
D461V1, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                3                201
  CLUS_2               14                123
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0649 MUTATED        0     11      2      1      2
  KIAA0649 WILD-TYPE     39     85     42     87     78
D461V2, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2               11                 85
  CLUS_3                2                 42
  CLUS_4                1                 87
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0649 MUTATED        1      5      4      4      2
  KIAA0649 WILD-TYPE     25     74     69     78     56
D461V3, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                5                 74
  CLUS_3                4                 69
  CLUS_4                4                 78
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0649 MUTATED        4      6      3      3
  KIAA0649 WILD-TYPE    123     45     68     66
D461V4, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                4                123
  CLUS_2                6                 45
  CLUS_3                3                 68
  CLUS_4                3                 66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0649 MUTATED        1      3     10      1      3
  KIAA0649 WILD-TYPE     83     82     75     68     44
D461V5, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                3                 82
  CLUS_3               10                 75
  CLUS_4                1                 68
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0649 MUTATED        4      2      3      9
  KIAA0649 WILD-TYPE     91     72    118     71
D461V6, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                4                 91
  CLUS_2                2                 72
  CLUS_3                3                118
  CLUS_4                9                 71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0649 MUTATED        4      6      1      5      1      1
  KIAA0649 WILD-TYPE     48     58     71     99     39     58
D461V7, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                6                 58
  CLUS_3                1                 71
  CLUS_4                5                 99
  CLUS_5                1                 39
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0649 MUTATED       14      3      1
  KIAA0649 WILD-TYPE    203     72     98
D461V8, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1               14                203
  CLUS_2                3                 72
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0649 MUTATED        4      4      7
  KIAA0649 WILD-TYPE    117    104     65
D461V9, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                4                104
  CLUS_3                7                 65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0649 MUTATED        5      1      4      1      4
  KIAA0649 WILD-TYPE     83     65     41     54     43
D461V10, multiclass
        clus
vv       KIAA0649 MUTATED KIAA0649 WILD-TYPE
  CLUS_1                5                 83
  CLUS_2                1                 65
  CLUS_3                4                 41
  CLUS_4                1                 54
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(462) Variable = CD79A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD79A MUTATED        0      7      0      0
  CD79A WILD-TYPE    204    130     47      3
D462V1, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             0             204
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD79A MUTATED        0      3      0      0      2
  CD79A WILD-TYPE     39     93     44     88     78
D462V2, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD79A MUTATED        1      2      1      0      1
  CD79A WILD-TYPE     25     77     72     82     57
D462V3, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD79A MUTATED        2      2      1      0
  CD79A WILD-TYPE    125     49     70     69
D462V4, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             2             125
  CLUS_2             2              49
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD79A MUTATED        0      0      5      1      0
  CD79A WILD-TYPE     84     85     80     68     47
D462V5, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD79A MUTATED        2      0      2      2
  CD79A WILD-TYPE     93     74    119     78
D462V6, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             2             119
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD79A MUTATED        1      5      1      0      0      0
  CD79A WILD-TYPE     51     59     71    104     40     59
D462V7, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             1              51
  CLUS_2             5              59
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD79A MUTATED        5      1      1
  CD79A WILD-TYPE    212     74     98
D462V8, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             5             212
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CD79A MUTATED        2      0      3
  CD79A WILD-TYPE    119    108     69
D462V9, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD79A MUTATED        1      0      3      0      1
  CD79A WILD-TYPE     87     66     42     55     46
D462V10, multiclass
        clus
vv       CD79A MUTATED CD79A WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(463) Variable = C22ORF30 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C22ORF30 MUTATED        0      6      0      0
  C22ORF30 WILD-TYPE    204    131     47      3
D463V1, multiclass
        clus
vv       C22ORF30 MUTATED C22ORF30 WILD-TYPE
  CLUS_1                0                204
  CLUS_2                6                131
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C22ORF30 MUTATED        0      3      1      0      1
  C22ORF30 WILD-TYPE     39     93     43     88     79
D463V2, multiclass
        clus
vv       C22ORF30 MUTATED C22ORF30 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                3                 93
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C22ORF30 MUTATED        0      3      1      0      1
  C22ORF30 WILD-TYPE     26     76     72     82     57
D463V3, multiclass
        clus
vv       C22ORF30 MUTATED C22ORF30 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                3                 76
  CLUS_3                1                 72
  CLUS_4                0                 82
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C22ORF30 MUTATED        0      3      2      0
  C22ORF30 WILD-TYPE    127     48     69     69
D463V4, multiclass
        clus
vv       C22ORF30 MUTATED C22ORF30 WILD-TYPE
  CLUS_1                0                127
  CLUS_2                3                 48
  CLUS_3                2                 69
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C22ORF30 MUTATED        0      1      4      1      0
  C22ORF30 WILD-TYPE     84     84     81     68     47
D463V5, multiclass
        clus
vv       C22ORF30 MUTATED C22ORF30 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                4                 81
  CLUS_4                1                 68
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C22ORF30 MUTATED        2      1      1      2
  C22ORF30 WILD-TYPE     93     73    120     78
D463V6, multiclass
        clus
vv       C22ORF30 MUTATED C22ORF30 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                2                 78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C22ORF30 MUTATED        1      4      1      0      0      0
  C22ORF30 WILD-TYPE     51     60     71    104     40     59
D463V7, multiclass
        clus
vv       C22ORF30 MUTATED C22ORF30 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                4                 60
  CLUS_3                1                 71
  CLUS_4                0                104
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C22ORF30 MUTATED        5      1      0
  C22ORF30 WILD-TYPE    212     74     99
D463V8, multiclass
        clus
vv       C22ORF30 MUTATED C22ORF30 WILD-TYPE
  CLUS_1                5                212
  CLUS_2                1                 74
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C22ORF30 MUTATED        2      0      3
  C22ORF30 WILD-TYPE    119    108     69
D463V9, multiclass
        clus
vv       C22ORF30 MUTATED C22ORF30 WILD-TYPE
  CLUS_1                2                119
  CLUS_2                0                108
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C22ORF30 MUTATED        1      0      3      0      1
  C22ORF30 WILD-TYPE     87     66     42     55     46
D463V10, multiclass
        clus
vv       C22ORF30 MUTATED C22ORF30 WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                0                 66
  CLUS_3                3                 42
  CLUS_4                0                 55
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(464) Variable = SRP72 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRP72 MUTATED        1     13      0      0
  SRP72 WILD-TYPE    203    124     47      3
D464V1, multiclass
        clus
vv       SRP72 MUTATED SRP72 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            13             124
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRP72 MUTATED        0      6      1      0      3
  SRP72 WILD-TYPE     39     90     43     88     77
D464V2, multiclass
        clus
vv       SRP72 MUTATED SRP72 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRP72 MUTATED        1      2      2      4      2
  SRP72 WILD-TYPE     25     77     71     78     56
D464V3, multiclass
        clus
vv       SRP72 MUTATED SRP72 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             2              71
  CLUS_4             4              78
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRP72 MUTATED        4      1      4      2
  SRP72 WILD-TYPE    123     50     67     67
D464V4, multiclass
        clus
vv       SRP72 MUTATED SRP72 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             1              50
  CLUS_3             4              67
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRP72 MUTATED        1      7      3      2      1
  SRP72 WILD-TYPE     83     78     82     67     46
D464V5, multiclass
        clus
vv       SRP72 MUTATED SRP72 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             7              78
  CLUS_3             3              82
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRP72 MUTATED        4      5      0      5
  SRP72 WILD-TYPE     91     69    121     75
D464V6, multiclass
        clus
vv       SRP72 MUTATED SRP72 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             5              69
  CLUS_3             0             121
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SRP72 MUTATED        2      2      2      6      1      1
  SRP72 WILD-TYPE     50     62     70     98     39     58
D464V7, multiclass
        clus
vv       SRP72 MUTATED SRP72 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             2              70
  CLUS_4             6              98
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SRP72 MUTATED        8      4      2
  SRP72 WILD-TYPE    209     71     97
D464V8, multiclass
        clus
vv       SRP72 MUTATED SRP72 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             4              71
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SRP72 MUTATED        4      6      0
  SRP72 WILD-TYPE    117    102     72
D464V9, multiclass
        clus
vv       SRP72 MUTATED SRP72 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             6             102
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRP72 MUTATED        5      4      0      0      1
  SRP72 WILD-TYPE     83     62     45     55     46
D464V10, multiclass
        clus
vv       SRP72 MUTATED SRP72 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             4              62
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(465) Variable = PLAG1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAG1 MUTATED        0     11      1      0
  PLAG1 WILD-TYPE    204    126     46      3
D465V1, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAG1 MUTATED        0      4      1      1      2
  PLAG1 WILD-TYPE     39     92     43     87     78
D465V2, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAG1 MUTATED        2      2      2      2      1
  PLAG1 WILD-TYPE     24     77     71     80     57
D465V3, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              77
  CLUS_3             2              71
  CLUS_4             2              80
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAG1 MUTATED        3      3      1      2
  PLAG1 WILD-TYPE    124     48     70     67
D465V4, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             3              48
  CLUS_3             1              70
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAG1 MUTATED        1      3      4      2      1
  PLAG1 WILD-TYPE     83     82     81     67     46
D465V5, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             4              81
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLAG1 MUTATED        3      2      3      3
  PLAG1 WILD-TYPE     92     72    118     77
D465V6, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             3             118
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLAG1 MUTATED        2      7      1      1      0      1
  PLAG1 WILD-TYPE     50     57     71    103     40     58
D465V7, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             7              57
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLAG1 MUTATED       10      1      1
  PLAG1 WILD-TYPE    207     74     98
D465V8, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PLAG1 MUTATED        4      1      3
  PLAG1 WILD-TYPE    117    107     69
D465V9, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLAG1 MUTATED        0      1      3      1      3
  PLAG1 WILD-TYPE     88     65     42     54     44
D465V10, multiclass
        clus
vv       PLAG1 MUTATED PLAG1 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(466) Variable = HSPA14 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPA14 MUTATED        2      3      0      0
  HSPA14 WILD-TYPE    202    134     47      3
D466V1, multiclass
        clus
vv       HSPA14 MUTATED HSPA14 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              3              134
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSPA14 MUTATED        0      2      1      2      0
  HSPA14 WILD-TYPE     39     94     43     86     80
D466V2, multiclass
        clus
vv       HSPA14 MUTATED HSPA14 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              2               94
  CLUS_3              1               43
  CLUS_4              2               86
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSPA14 MUTATED        0      3      0      0      1
  HSPA14 WILD-TYPE     26     76     73     82     57
D466V3, multiclass
        clus
vv       HSPA14 MUTATED HSPA14 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              0               73
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPA14 MUTATED        0      1      3      0
  HSPA14 WILD-TYPE    127     50     68     69
D466V4, multiclass
        clus
vv       HSPA14 MUTATED HSPA14 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              1               50
  CLUS_3              3               68
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSPA14 MUTATED        1      1      2      1      0
  HSPA14 WILD-TYPE     83     84     83     68     47
D466V5, multiclass
        clus
vv       HSPA14 MUTATED HSPA14 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              2               83
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPA14 MUTATED        1      2      1      1
  HSPA14 WILD-TYPE     94     72    120     79
D466V6, multiclass
        clus
vv       HSPA14 MUTATED HSPA14 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HSPA14 MUTATED        1      3      0      0      1      1
  HSPA14 WILD-TYPE     51     61     72    104     39     58
D466V7, multiclass
        clus
vv       HSPA14 MUTATED HSPA14 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              3               61
  CLUS_3              0               72
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HSPA14 MUTATED        4      0      2
  HSPA14 WILD-TYPE    213     75     97
D466V8, multiclass
        clus
vv       HSPA14 MUTATED HSPA14 WILD-TYPE
  CLUS_1              4              213
  CLUS_2              0               75
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HSPA14 MUTATED        3      0      2
  HSPA14 WILD-TYPE    118    108     70
D466V9, multiclass
        clus
vv       HSPA14 MUTATED HSPA14 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSPA14 MUTATED        0      0      2      1      2
  HSPA14 WILD-TYPE     88     66     43     54     45
D466V10, multiclass
        clus
vv       HSPA14 MUTATED HSPA14 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(467) Variable = CYP7B1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP7B1 MUTATED       10     10      0      0
  CYP7B1 WILD-TYPE    194    127     47      3
D467V1, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1             10              194
  CLUS_2             10              127
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP7B1 MUTATED        0      5      2      6      4
  CYP7B1 WILD-TYPE     39     91     42     82     76
D467V2, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              2               42
  CLUS_4              6               82
  CLUS_5              4               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP7B1 MUTATED        1      8      4      4      1
  CYP7B1 WILD-TYPE     25     71     69     78     57
D467V3, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              8               71
  CLUS_3              4               69
  CLUS_4              4               78
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP7B1 MUTATED        6      2      8      2
  CYP7B1 WILD-TYPE    121     49     63     67
D467V4, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              6              121
  CLUS_2              2               49
  CLUS_3              8               63
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP7B1 MUTATED        5      3      6      2      2
  CYP7B1 WILD-TYPE     79     82     79     67     45
D467V5, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              5               79
  CLUS_2              3               82
  CLUS_3              6               79
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP7B1 MUTATED        2      6      5      5
  CYP7B1 WILD-TYPE     93     68    116     75
D467V6, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              6               68
  CLUS_3              5              116
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CYP7B1 MUTATED        1      5      1      6      1      6
  CYP7B1 WILD-TYPE     51     59     71     98     39     53
D467V7, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              5               59
  CLUS_3              1               71
  CLUS_4              6               98
  CLUS_5              1               39
  CLUS_6              6               53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP7B1 MUTATED        6      7      7
  CYP7B1 WILD-TYPE    211     68     92
D467V8, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              7               68
  CLUS_3              7               92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP7B1 MUTATED        7      6      4
  CYP7B1 WILD-TYPE    114    102     68
D467V9, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              7              114
  CLUS_2              6              102
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP7B1 MUTATED        4      4      1      6      2
  CYP7B1 WILD-TYPE     84     62     44     49     45
D467V10, multiclass
        clus
vv       CYP7B1 MUTATED CYP7B1 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              4               62
  CLUS_3              1               44
  CLUS_4              6               49
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(468) Variable = SLC7A10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A10 MUTATED        1      4      0      0
  SLC7A10 WILD-TYPE    203    133     47      3
D468V1, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               4               133
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC7A10 MUTATED        0      3      1      1      1
  SLC7A10 WILD-TYPE     39     93     43     87     79
D468V2, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC7A10 MUTATED        1      2      1      0      1
  SLC7A10 WILD-TYPE     25     77     72     82     57
D468V3, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               2                77
  CLUS_3               1                72
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A10 MUTATED        2      2      1      0
  SLC7A10 WILD-TYPE    125     49     70     69
D468V4, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               2                49
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC7A10 MUTATED        1      1      3      1      0
  SLC7A10 WILD-TYPE     83     84     82     68     47
D468V5, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               3                82
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A10 MUTATED        2      0      2      2
  SLC7A10 WILD-TYPE     93     74    119     78
D468V6, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               0                74
  CLUS_3               2               119
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC7A10 MUTATED        3      1      1      1      0      0
  SLC7A10 WILD-TYPE     49     63     71    103     40     59
D468V7, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               1                63
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC7A10 MUTATED        6      0      0
  SLC7A10 WILD-TYPE    211     75     99
D468V8, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               0                75
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC7A10 MUTATED        4      1      1
  SLC7A10 WILD-TYPE    117    107     71
D468V9, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               1               107
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC7A10 MUTATED        3      0      1      0      2
  SLC7A10 WILD-TYPE     85     66     44     55     45
D468V10, multiclass
        clus
vv       SLC7A10 MUTATED SLC7A10 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(469) Variable = FASTKD1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FASTKD1 MUTATED        1      9      2      0
  FASTKD1 WILD-TYPE    203    128     45      3
D469V1, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               9               128
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FASTKD1 MUTATED        1      7      2      1      1
  FASTKD1 WILD-TYPE     38     89     42     87     79
D469V2, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               7                89
  CLUS_3               2                42
  CLUS_4               1                87
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FASTKD1 MUTATED        2      4      5      0      1
  FASTKD1 WILD-TYPE     24     75     68     82     57
D469V3, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               4                75
  CLUS_3               5                68
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FASTKD1 MUTATED        4      5      2      1
  FASTKD1 WILD-TYPE    123     46     69     68
D469V4, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               4               123
  CLUS_2               5                46
  CLUS_3               2                69
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FASTKD1 MUTATED        1      2      4      2      3
  FASTKD1 WILD-TYPE     83     83     81     67     44
D469V5, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               2                83
  CLUS_3               4                81
  CLUS_4               2                67
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FASTKD1 MUTATED        2      1      3      6
  FASTKD1 WILD-TYPE     93     73    118     74
D469V6, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               3               118
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FASTKD1 MUTATED        4      2      3      0      2      1
  FASTKD1 WILD-TYPE     48     62     69    104     38     58
D469V7, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               2                62
  CLUS_3               3                69
  CLUS_4               0               104
  CLUS_5               2                38
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FASTKD1 MUTATED       10      0      2
  FASTKD1 WILD-TYPE    207     75     97
D469V8, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1              10               207
  CLUS_2               0                75
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FASTKD1 MUTATED        7      0      2
  FASTKD1 WILD-TYPE    114    108     70
D469V9, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               7               114
  CLUS_2               0               108
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FASTKD1 MUTATED        1      0      2      1      5
  FASTKD1 WILD-TYPE     87     66     43     54     42
D469V10, multiclass
        clus
vv       FASTKD1 MUTATED FASTKD1 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               2                43
  CLUS_4               1                54
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(470) Variable = NEUROD6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEUROD6 MUTATED        1      3      2      0
  NEUROD6 WILD-TYPE    203    134     45      3
D470V1, multiclass
        clus
vv       NEUROD6 MUTATED NEUROD6 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               3               134
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEUROD6 MUTATED        0      2      0      1      0
  NEUROD6 WILD-TYPE     39     94     44     87     80
D470V2, multiclass
        clus
vv       NEUROD6 MUTATED NEUROD6 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               2                94
  CLUS_3               0                44
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEUROD6 MUTATED        0      1      1      0      3
  NEUROD6 WILD-TYPE     26     78     72     82     55
D470V3, multiclass
        clus
vv       NEUROD6 MUTATED NEUROD6 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                78
  CLUS_3               1                72
  CLUS_4               0                82
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEUROD6 MUTATED        2      3      0      0
  NEUROD6 WILD-TYPE    125     48     71     69
D470V4, multiclass
        clus
vv       NEUROD6 MUTATED NEUROD6 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               3                48
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEUROD6 MUTATED        1      1      0      1      2
  NEUROD6 WILD-TYPE     83     84     85     68     45
D470V5, multiclass
        clus
vv       NEUROD6 MUTATED NEUROD6 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               0                85
  CLUS_4               1                68
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEUROD6 MUTATED        2      1      0      2
  NEUROD6 WILD-TYPE     93     73    121     78
D470V6, multiclass
        clus
vv       NEUROD6 MUTATED NEUROD6 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEUROD6 MUTATED        0      4      0      1      0      1
  NEUROD6 WILD-TYPE     52     60     72    103     40     58
D470V7, multiclass
        clus
vv       NEUROD6 MUTATED NEUROD6 WILD-TYPE
  CLUS_1               0                52
  CLUS_2               4                60
  CLUS_3               0                72
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NEUROD6 MUTATED        3      1      2
  NEUROD6 WILD-TYPE    214     74     97
D470V8, multiclass
        clus
vv       NEUROD6 MUTATED NEUROD6 WILD-TYPE
  CLUS_1               3               214
  CLUS_2               1                74
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  NEUROD6 MUTATED        1      1      1
  NEUROD6 WILD-TYPE    120    107     71
D470V9, multiclass
        clus
vv       NEUROD6 MUTATED NEUROD6 WILD-TYPE
  CLUS_1               1               120
  CLUS_2               1               107
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEUROD6 MUTATED        0      1      1      1      0
  NEUROD6 WILD-TYPE     88     65     44     54     47
D470V10, multiclass
        clus
vv       NEUROD6 MUTATED NEUROD6 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               1                65
  CLUS_3               1                44
  CLUS_4               1                54
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(471) Variable = KRTAP10-9 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP10-9 MUTATED        1      6      1      0
  KRTAP10-9 WILD-TYPE    203    131     46      3
D471V1, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 1                 203
  CLUS_2                 6                 131
  CLUS_3                 1                  46
  CLUS_4                 0                   3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP10-9 MUTATED        1      3      0      1      1
  KRTAP10-9 WILD-TYPE     38     93     44     87     79
D471V2, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 1                  38
  CLUS_2                 3                  93
  CLUS_3                 0                  44
  CLUS_4                 1                  87
  CLUS_5                 1                  79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP10-9 MUTATED        1      3      2      0      2
  KRTAP10-9 WILD-TYPE     25     76     71     82     56
D471V3, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 1                  25
  CLUS_2                 3                  76
  CLUS_3                 2                  71
  CLUS_4                 0                  82
  CLUS_5                 2                  56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP10-9 MUTATED        3      3      2      0
  KRTAP10-9 WILD-TYPE    124     48     69     69
D471V4, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 3                 124
  CLUS_2                 3                  48
  CLUS_3                 2                  69
  CLUS_4                 0                  69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP10-9 MUTATED        0      1      3      0      2
  KRTAP10-9 WILD-TYPE     84     84     82     69     45
D471V5, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 0                  84
  CLUS_2                 1                  84
  CLUS_3                 3                  82
  CLUS_4                 0                  69
  CLUS_5                 2                  45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP10-9 MUTATED        1      1      1      3
  KRTAP10-9 WILD-TYPE     94     73    120     77
D471V6, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 1                  94
  CLUS_2                 1                  73
  CLUS_3                 1                 120
  CLUS_4                 3                  77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRTAP10-9 MUTATED        2      4      0      2      0      0
  KRTAP10-9 WILD-TYPE     50     60     72    102     40     59
D471V7, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 2                  50
  CLUS_2                 4                  60
  CLUS_3                 0                  72
  CLUS_4                 2                 102
  CLUS_5                 0                  40
  CLUS_6                 0                  59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KRTAP10-9 MUTATED        6      2      0
  KRTAP10-9 WILD-TYPE    211     73     99
D471V8, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 6                 211
  CLUS_2                 2                  73
  CLUS_3                 0                  99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KRTAP10-9 MUTATED        1      2      3
  KRTAP10-9 WILD-TYPE    120    106     69
D471V9, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 1                 120
  CLUS_2                 2                 106
  CLUS_3                 3                  69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP10-9 MUTATED        2      1      2      0      1
  KRTAP10-9 WILD-TYPE     86     65     43     55     46
D471V10, multiclass
        clus
vv       KRTAP10-9 MUTATED KRTAP10-9 WILD-TYPE
  CLUS_1                 2                  86
  CLUS_2                 1                  65
  CLUS_3                 2                  43
  CLUS_4                 0                  55
  CLUS_5                 1                  46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(472) Variable = RBMX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX MUTATED        0      9      1      0
  RBMX WILD-TYPE    204    128     46      3
D472V1, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            0            204
  CLUS_2            9            128
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBMX MUTATED        0      6      0      0      2
  RBMX WILD-TYPE     39     90     44     88     78
D472V2, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            0             39
  CLUS_2            6             90
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBMX MUTATED        0      3      3      1      1
  RBMX WILD-TYPE     26     76     70     81     57
D472V3, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX MUTATED        2      3      2      1
  RBMX WILD-TYPE    125     48     69     68
D472V4, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            2            125
  CLUS_2            3             48
  CLUS_3            2             69
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBMX MUTATED        0      4      3      1      1
  RBMX WILD-TYPE     84     81     82     68     46
D472V5, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            0             84
  CLUS_2            4             81
  CLUS_3            3             82
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBMX MUTATED        2      3      1      3
  RBMX WILD-TYPE     93     71    120     77
D472V6, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            2             93
  CLUS_2            3             71
  CLUS_3            1            120
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBMX MUTATED        3      3      1      2      1      0
  RBMX WILD-TYPE     49     61     71    102     39     59
D472V7, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            3             49
  CLUS_2            3             61
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBMX MUTATED        5      3      2
  RBMX WILD-TYPE    212     72     97
D472V8, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            5            212
  CLUS_2            3             72
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RBMX MUTATED        1      3      2
  RBMX WILD-TYPE    120    105     70
D472V9, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            1            120
  CLUS_2            3            105
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBMX MUTATED        2      2      1      0      1
  RBMX WILD-TYPE     86     64     44     55     46
D472V10, multiclass
        clus
vv       RBMX MUTATED RBMX WILD-TYPE
  CLUS_1            2             86
  CLUS_2            2             64
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(473) Variable = C10ORF71 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF71 MUTATED        2      9      1      0
  C10ORF71 WILD-TYPE    202    128     46      3
D473V1, multiclass
        clus
vv       C10ORF71 MUTATED C10ORF71 WILD-TYPE
  CLUS_1                2                202
  CLUS_2                9                128
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C10ORF71 MUTATED        0      6      1      1      1
  C10ORF71 WILD-TYPE     39     90     43     87     79
D473V2, multiclass
        clus
vv       C10ORF71 MUTATED C10ORF71 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                6                 90
  CLUS_3                1                 43
  CLUS_4                1                 87
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C10ORF71 MUTATED        1      4      5      1      0
  C10ORF71 WILD-TYPE     25     75     68     81     58
D473V3, multiclass
        clus
vv       C10ORF71 MUTATED C10ORF71 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                4                 75
  CLUS_3                5                 68
  CLUS_4                1                 81
  CLUS_5                0                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF71 MUTATED        4      3      3      1
  C10ORF71 WILD-TYPE    123     48     68     68
D473V4, multiclass
        clus
vv       C10ORF71 MUTATED C10ORF71 WILD-TYPE
  CLUS_1                4                123
  CLUS_2                3                 48
  CLUS_3                3                 68
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C10ORF71 MUTATED        0      2      4      0      3
  C10ORF71 WILD-TYPE     84     83     81     69     44
D473V5, multiclass
        clus
vv       C10ORF71 MUTATED C10ORF71 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                2                 83
  CLUS_3                4                 81
  CLUS_4                0                 69
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C10ORF71 MUTATED        0      2      1      6
  C10ORF71 WILD-TYPE     95     72    120     74
D473V6, multiclass
        clus
vv       C10ORF71 MUTATED C10ORF71 WILD-TYPE
  CLUS_1                0                 95
  CLUS_2                2                 72
  CLUS_3                1                120
  CLUS_4                6                 74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C10ORF71 MUTATED        3      6      0      3      0      0
  C10ORF71 WILD-TYPE     49     58     72    101     40     59
D473V7, multiclass
        clus
vv       C10ORF71 MUTATED C10ORF71 WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                6                 58
  CLUS_3                0                 72
  CLUS_4                3                101
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C10ORF71 MUTATED        9      2      1
  C10ORF71 WILD-TYPE    208     73     98
D473V8, multiclass
        clus
vv       C10ORF71 MUTATED C10ORF71 WILD-TYPE
  CLUS_1                9                208
  CLUS_2                2                 73
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C10ORF71 MUTATED        1      3      5
  C10ORF71 WILD-TYPE    120    105     67
D473V9, multiclass
        clus
vv       C10ORF71 MUTATED C10ORF71 WILD-TYPE
  CLUS_1                1                120
  CLUS_2                3                105
  CLUS_3                5                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C10ORF71 MUTATED        1      3      3      0      2
  C10ORF71 WILD-TYPE     87     63     42     55     45
D473V10, multiclass
        clus
vv       C10ORF71 MUTATED C10ORF71 WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                3                 63
  CLUS_3                3                 42
  CLUS_4                0                 55
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(474) Variable = MRE11A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRE11A MUTATED        1      5      1      0
  MRE11A WILD-TYPE    203    132     46      3
D474V1, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              1              203
  CLUS_2              5              132
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRE11A MUTATED        1      3      1      0      0
  MRE11A WILD-TYPE     38     93     43     88     80
D474V2, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              1               38
  CLUS_2              3               93
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRE11A MUTATED        0      2      4      0      1
  MRE11A WILD-TYPE     26     77     69     82     57
D474V3, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              4               69
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRE11A MUTATED        1      4      0      2
  MRE11A WILD-TYPE    126     47     71     67
D474V4, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              1              126
  CLUS_2              4               47
  CLUS_3              0               71
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRE11A MUTATED        0      2      2      1      1
  MRE11A WILD-TYPE     84     83     83     68     46
D474V5, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              2               83
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRE11A MUTATED        2      2      0      2
  MRE11A WILD-TYPE     93     72    121     78
D474V6, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MRE11A MUTATED        1      4      0      0      2      0
  MRE11A WILD-TYPE     51     60     72    104     38     59
D474V7, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              1               51
  CLUS_2              4               60
  CLUS_3              0               72
  CLUS_4              0              104
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRE11A MUTATED        6      0      1
  MRE11A WILD-TYPE    211     75     98
D474V8, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              6              211
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRE11A MUTATED        3      0      2
  MRE11A WILD-TYPE    118    108     70
D474V9, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRE11A MUTATED        3      0      1      0      1
  MRE11A WILD-TYPE     85     66     44     55     46
D474V10, multiclass
        clus
vv       MRE11A MUTATED MRE11A WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(475) Variable = MAP2K1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K1 MUTATED        4      2      1      0
  MAP2K1 WILD-TYPE    200    135     46      3
D475V1, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              4              200
  CLUS_2              2              135
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP2K1 MUTATED        1      3      1      0      2
  MAP2K1 WILD-TYPE     38     93     43     88     78
D475V2, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              3               93
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP2K1 MUTATED        0      1      2      0      2
  MAP2K1 WILD-TYPE     26     78     71     82     56
D475V3, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K1 MUTATED        1      2      1      1
  MAP2K1 WILD-TYPE    126     49     70     68
D475V4, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP2K1 MUTATED        1      0      2      0      3
  MAP2K1 WILD-TYPE     83     85     83     69     44
D475V5, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               85
  CLUS_3              2               83
  CLUS_4              0               69
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP2K1 MUTATED        1      0      2      3
  MAP2K1 WILD-TYPE     94     74    119     77
D475V6, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              0               74
  CLUS_3              2              119
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP2K1 MUTATED        2      3      0      1      1      0
  MAP2K1 WILD-TYPE     50     61     72    103     39     59
D475V7, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              3               61
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K1 MUTATED        5      2      0
  MAP2K1 WILD-TYPE    212     73     99
D475V8, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              2               73
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP2K1 MUTATED        2      1      4
  MAP2K1 WILD-TYPE    119    107     68
D475V9, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              1              107
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP2K1 MUTATED        3      0      3      0      1
  MAP2K1 WILD-TYPE     85     66     42     55     46
D475V10, multiclass
        clus
vv       MAP2K1 MUTATED MAP2K1 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(476) Variable = C1ORF177 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF177 MUTATED        1     10      1      0
  C1ORF177 WILD-TYPE    203    127     46      3
D476V1, multiclass
        clus
vv       C1ORF177 MUTATED C1ORF177 WILD-TYPE
  CLUS_1                1                203
  CLUS_2               10                127
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF177 MUTATED        1      7      2      0      1
  C1ORF177 WILD-TYPE     38     89     42     88     79
D476V2, multiclass
        clus
vv       C1ORF177 MUTATED C1ORF177 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                7                 89
  CLUS_3                2                 42
  CLUS_4                0                 88
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF177 MUTATED        0      3      1      3      3
  C1ORF177 WILD-TYPE     26     76     72     79     55
D476V3, multiclass
        clus
vv       C1ORF177 MUTATED C1ORF177 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                3                 76
  CLUS_3                1                 72
  CLUS_4                3                 79
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF177 MUTATED        1      3      2      4
  C1ORF177 WILD-TYPE    126     48     69     65
D476V4, multiclass
        clus
vv       C1ORF177 MUTATED C1ORF177 WILD-TYPE
  CLUS_1                1                126
  CLUS_2                3                 48
  CLUS_3                2                 69
  CLUS_4                4                 65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF177 MUTATED        0      2      5      3      2
  C1ORF177 WILD-TYPE     84     83     80     66     45
D476V5, multiclass
        clus
vv       C1ORF177 MUTATED C1ORF177 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                2                 83
  CLUS_3                5                 80
  CLUS_4                3                 66
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF177 MUTATED        3      3      0      6
  C1ORF177 WILD-TYPE     92     71    121     74
D476V6, multiclass
        clus
vv       C1ORF177 MUTATED C1ORF177 WILD-TYPE
  CLUS_1                3                 92
  CLUS_2                3                 71
  CLUS_3                0                121
  CLUS_4                6                 74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1ORF177 MUTATED        4      3      2      2      1      0
  C1ORF177 WILD-TYPE     48     61     70    102     39     59
D476V7, multiclass
        clus
vv       C1ORF177 MUTATED C1ORF177 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                3                 61
  CLUS_3                2                 70
  CLUS_4                2                102
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C1ORF177 MUTATED       10      2      0
  C1ORF177 WILD-TYPE    207     73     99
D476V8, multiclass
        clus
vv       C1ORF177 MUTATED C1ORF177 WILD-TYPE
  CLUS_1               10                207
  CLUS_2                2                 73
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C1ORF177 MUTATED        5      0      4
  C1ORF177 WILD-TYPE    116    108     68
D476V9, multiclass
        clus
vv       C1ORF177 MUTATED C1ORF177 WILD-TYPE
  CLUS_1                5                116
  CLUS_2                0                108
  CLUS_3                4                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF177 MUTATED        4      0      2      0      3
  C1ORF177 WILD-TYPE     84     66     43     55     44
D476V10, multiclass
        clus
vv       C1ORF177 MUTATED C1ORF177 WILD-TYPE
  CLUS_1                4                 84
  CLUS_2                0                 66
  CLUS_3                2                 43
  CLUS_4                0                 55
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(477) Variable = IGF2BP3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGF2BP3 MUTATED        2      4      0      0
  IGF2BP3 WILD-TYPE    202    133     47      3
D477V1, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               4               133
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGF2BP3 MUTATED        1      5      1      0      0
  IGF2BP3 WILD-TYPE     38     91     43     88     80
D477V2, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               5                91
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGF2BP3 MUTATED        0      1      1      1      1
  IGF2BP3 WILD-TYPE     26     78     72     81     57
D477V3, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                78
  CLUS_3               1                72
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGF2BP3 MUTATED        0      2      1      1
  IGF2BP3 WILD-TYPE    127     49     70     68
D477V4, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               2                49
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGF2BP3 MUTATED        0      0      5      2      0
  IGF2BP3 WILD-TYPE     84     85     80     67     47
D477V5, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               5                80
  CLUS_4               2                67
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGF2BP3 MUTATED        2      1      0      4
  IGF2BP3 WILD-TYPE     93     73    121     76
D477V6, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IGF2BP3 MUTATED        3      1      2      0      1      0
  IGF2BP3 WILD-TYPE     49     63     70    104     39     59
D477V7, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               1                63
  CLUS_3               2                70
  CLUS_4               0               104
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IGF2BP3 MUTATED        6      1      0
  IGF2BP3 WILD-TYPE    211     74     99
D477V8, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               1                74
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  IGF2BP3 MUTATED        4      0      3
  IGF2BP3 WILD-TYPE    117    108     69
D477V9, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               0               108
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGF2BP3 MUTATED        3      0      1      0      3
  IGF2BP3 WILD-TYPE     85     66     44     55     44
D477V10, multiclass
        clus
vv       IGF2BP3 MUTATED IGF2BP3 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(478) Variable = AKAP13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP13 MUTATED       13     17      2      0
  AKAP13 WILD-TYPE    191    120     45      3
D478V1, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1             13              191
  CLUS_2             17              120
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP13 MUTATED        1     14      2      6      1
  AKAP13 WILD-TYPE     38     82     42     82     79
D478V2, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              1               38
  CLUS_2             14               82
  CLUS_3              2               42
  CLUS_4              6               82
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP13 MUTATED        1      9     11      3      5
  AKAP13 WILD-TYPE     25     70     62     79     53
D478V3, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              9               70
  CLUS_3             11               62
  CLUS_4              3               79
  CLUS_5              5               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP13 MUTATED        8     13      6      2
  AKAP13 WILD-TYPE    119     38     65     67
D478V4, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              8              119
  CLUS_2             13               38
  CLUS_3              6               65
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP13 MUTATED        4      2     15      2      7
  AKAP13 WILD-TYPE     80     83     70     67     40
D478V5, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              4               80
  CLUS_2              2               83
  CLUS_3             15               70
  CLUS_4              2               67
  CLUS_5              7               40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKAP13 MUTATED        7      2      9     12
  AKAP13 WILD-TYPE     88     72    112     68
D478V6, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              7               88
  CLUS_2              2               72
  CLUS_3              9              112
  CLUS_4             12               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AKAP13 MUTATED        8     11      8      1      0      4
  AKAP13 WILD-TYPE     44     53     64    103     40     55
D478V7, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              8               44
  CLUS_2             11               53
  CLUS_3              8               64
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              4               55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP13 MUTATED       25      1      6
  AKAP13 WILD-TYPE    192     74     93
D478V8, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1             25              192
  CLUS_2              1               74
  CLUS_3              6               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AKAP13 MUTATED       12      1      8
  AKAP13 WILD-TYPE    109    107     64
D478V9, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1             12              109
  CLUS_2              1              107
  CLUS_3              8               64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKAP13 MUTATED        6      1      4      2      8
  AKAP13 WILD-TYPE     82     65     41     53     39
D478V10, multiclass
        clus
vv       AKAP13 MUTATED AKAP13 WILD-TYPE
  CLUS_1              6               82
  CLUS_2              1               65
  CLUS_3              4               41
  CLUS_4              2               53
  CLUS_5              8               39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(479) Variable = ABCE1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCE1 MUTATED        1      7      2      0
  ABCE1 WILD-TYPE    203    130     45      3
D479V1, multiclass
        clus
vv       ABCE1 MUTATED ABCE1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             7             130
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCE1 MUTATED        1      2      3      1      0
  ABCE1 WILD-TYPE     38     94     41     87     80
D479V2, multiclass
        clus
vv       ABCE1 MUTATED ABCE1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             2              94
  CLUS_3             3              41
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCE1 MUTATED        0      5      2      1      1
  ABCE1 WILD-TYPE     26     74     71     81     57
D479V3, multiclass
        clus
vv       ABCE1 MUTATED ABCE1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             5              74
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCE1 MUTATED        1      3      4      1
  ABCE1 WILD-TYPE    126     48     67     68
D479V4, multiclass
        clus
vv       ABCE1 MUTATED ABCE1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             3              48
  CLUS_3             4              67
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCE1 MUTATED        1      3      3      2      1
  ABCE1 WILD-TYPE     83     82     82     67     46
D479V5, multiclass
        clus
vv       ABCE1 MUTATED ABCE1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             3              82
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCE1 MUTATED        3      2      1      4
  ABCE1 WILD-TYPE     92     72    120     76
D479V6, multiclass
        clus
vv       ABCE1 MUTATED ABCE1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCE1 MUTATED        1      3      2      2      1      1
  ABCE1 WILD-TYPE     51     61     70    102     39     58
D479V7, multiclass
        clus
vv       ABCE1 MUTATED ABCE1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             3              61
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCE1 MUTATED        8      1      1
  ABCE1 WILD-TYPE    209     74     98
D479V8, multiclass
        clus
vv       ABCE1 MUTATED ABCE1 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCE1 MUTATED        4      1      1
  ABCE1 WILD-TYPE    117    107     71
D479V9, multiclass
        clus
vv       ABCE1 MUTATED ABCE1 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCE1 MUTATED        1      0      1      0      4
  ABCE1 WILD-TYPE     87     66     44     55     43
D479V10, multiclass
        clus
vv       ABCE1 MUTATED ABCE1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(480) Variable = KLHL14 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL14 MUTATED        3     14      2      0
  KLHL14 WILD-TYPE    201    123     45      3
D480V1, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             14              123
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHL14 MUTATED        1     10      2      2      1
  KLHL14 WILD-TYPE     38     86     42     86     79
D480V2, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              1               38
  CLUS_2             10               86
  CLUS_3              2               42
  CLUS_4              2               86
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHL14 MUTATED        0      5      6      0      6
  KLHL14 WILD-TYPE     26     74     67     82     52
D480V3, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              5               74
  CLUS_3              6               67
  CLUS_4              0               82
  CLUS_5              6               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL14 MUTATED        5      7      3      2
  KLHL14 WILD-TYPE    122     44     68     67
D480V4, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              5              122
  CLUS_2              7               44
  CLUS_3              3               68
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHL14 MUTATED        2      5      7      0      4
  KLHL14 WILD-TYPE     82     80     78     69     43
D480V5, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              5               80
  CLUS_3              7               78
  CLUS_4              0               69
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL14 MUTATED        3      4      3      8
  KLHL14 WILD-TYPE     92     70    118     72
D480V6, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              4               70
  CLUS_3              3              118
  CLUS_4              8               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLHL14 MUTATED        3      8      2      3      1      2
  KLHL14 WILD-TYPE     49     56     70    101     39     57
D480V7, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              8               56
  CLUS_3              2               70
  CLUS_4              3              101
  CLUS_5              1               39
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL14 MUTATED       14      2      3
  KLHL14 WILD-TYPE    203     73     96
D480V8, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1             14              203
  CLUS_2              2               73
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KLHL14 MUTATED        7      3      6
  KLHL14 WILD-TYPE    114    105     66
D480V9, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              7              114
  CLUS_2              3              105
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHL14 MUTATED        5      2      3      2      4
  KLHL14 WILD-TYPE     83     64     42     53     43
D480V10, multiclass
        clus
vv       KLHL14 MUTATED KLHL14 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              2               64
  CLUS_3              3               42
  CLUS_4              2               53
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(481) Variable = H2AFY MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  H2AFY MUTATED        1      5      1      0
  H2AFY WILD-TYPE    203    132     46      3
D481V1, multiclass
        clus
vv       H2AFY MUTATED H2AFY WILD-TYPE
  CLUS_1             1             203
  CLUS_2             5             132
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  H2AFY MUTATED        1      3      2      0      0
  H2AFY WILD-TYPE     38     93     42     88     80
D481V2, multiclass
        clus
vv       H2AFY MUTATED H2AFY WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  H2AFY MUTATED        0      2      3      0      1
  H2AFY WILD-TYPE     26     77     70     82     57
D481V3, multiclass
        clus
vv       H2AFY MUTATED H2AFY WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  H2AFY MUTATED        0      6      0      0
  H2AFY WILD-TYPE    127     45     71     69
D481V4, multiclass
        clus
vv       H2AFY MUTATED H2AFY WILD-TYPE
  CLUS_1             0             127
  CLUS_2             6              45
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  H2AFY MUTATED        0      2      4      1      0
  H2AFY WILD-TYPE     84     83     81     68     47
D481V5, multiclass
        clus
vv       H2AFY MUTATED H2AFY WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  H2AFY MUTATED        2      2      0      3
  H2AFY WILD-TYPE     93     72    121     77
D481V6, multiclass
        clus
vv       H2AFY MUTATED H2AFY WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  H2AFY MUTATED        0      4      1      1      1      0
  H2AFY WILD-TYPE     52     60     71    103     39     59
D481V7, multiclass
        clus
vv       H2AFY MUTATED H2AFY WILD-TYPE
  CLUS_1             0              52
  CLUS_2             4              60
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  H2AFY MUTATED        6      1      0
  H2AFY WILD-TYPE    211     74     99
D481V8, multiclass
        clus
vv       H2AFY MUTATED H2AFY WILD-TYPE
  CLUS_1             6             211
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  H2AFY MUTATED        3      1      2
  H2AFY WILD-TYPE    118    107     70
D481V9, multiclass
        clus
vv       H2AFY MUTATED H2AFY WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  H2AFY MUTATED        1      1      2      0      2
  H2AFY WILD-TYPE     87     65     43     55     45
D481V10, multiclass
        clus
vv       H2AFY MUTATED H2AFY WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(482) Variable = USP35 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP35 MUTATED        3      4      1      0
  USP35 WILD-TYPE    201    133     46      3
D482V1, multiclass
        clus
vv       USP35 MUTATED USP35 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             4             133
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP35 MUTATED        0      7      1      0      0
  USP35 WILD-TYPE     39     89     43     88     80
D482V2, multiclass
        clus
vv       USP35 MUTATED USP35 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              89
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP35 MUTATED        0      1      4      0      2
  USP35 WILD-TYPE     26     78     69     82     56
D482V3, multiclass
        clus
vv       USP35 MUTATED USP35 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP35 MUTATED        1      6      0      0
  USP35 WILD-TYPE    126     45     71     69
D482V4, multiclass
        clus
vv       USP35 MUTATED USP35 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             6              45
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP35 MUTATED        1      1      5      0      1
  USP35 WILD-TYPE     83     84     80     69     46
D482V5, multiclass
        clus
vv       USP35 MUTATED USP35 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP35 MUTATED        1      1      2      4
  USP35 WILD-TYPE     94     73    119     76
D482V6, multiclass
        clus
vv       USP35 MUTATED USP35 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP35 MUTATED        2      3      1      1      0      1
  USP35 WILD-TYPE     50     61     71    103     40     58
D482V7, multiclass
        clus
vv       USP35 MUTATED USP35 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP35 MUTATED        5      1      2
  USP35 WILD-TYPE    212     74     97
D482V8, multiclass
        clus
vv       USP35 MUTATED USP35 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP35 MUTATED        3      2      2
  USP35 WILD-TYPE    118    106     70
D482V9, multiclass
        clus
vv       USP35 MUTATED USP35 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP35 MUTATED        2      1      2      1      1
  USP35 WILD-TYPE     86     65     43     54     46
D482V10, multiclass
        clus
vv       USP35 MUTATED USP35 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(483) Variable = ZFP36L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L1 MUTATED        0      5      0      0
  ZFP36L1 WILD-TYPE    204    132     47      3
D483V1, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               5               132
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L1 MUTATED        0      2      2      0      1
  ZFP36L1 WILD-TYPE     39     94     42     88     79
D483V2, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               2                94
  CLUS_3               2                42
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L1 MUTATED        0      2      2      0      0
  ZFP36L1 WILD-TYPE     26     77     71     82     58
D483V3, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               0                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L1 MUTATED        1      1      2      0
  ZFP36L1 WILD-TYPE    126     50     69     69
D483V4, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               1                50
  CLUS_3               2                69
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L1 MUTATED        0      2      2      1      0
  ZFP36L1 WILD-TYPE     84     83     83     68     47
D483V5, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3               2                83
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZFP36L1 MUTATED        1      1      0      3
  ZFP36L1 WILD-TYPE     94     73    121     77
D483V6, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZFP36L1 MUTATED        1      1      1      2      0      0
  ZFP36L1 WILD-TYPE     51     63     71    102     40     59
D483V7, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               1                63
  CLUS_3               1                71
  CLUS_4               2               102
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L1 MUTATED        4      1      0
  ZFP36L1 WILD-TYPE    213     74     99
D483V8, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               4               213
  CLUS_2               1                74
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZFP36L1 MUTATED        2      2      1
  ZFP36L1 WILD-TYPE    119    106     71
D483V9, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               2               106
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZFP36L1 MUTATED        1      1      1      0      2
  ZFP36L1 WILD-TYPE     87     65     44     55     45
D483V10, multiclass
        clus
vv       ZFP36L1 MUTATED ZFP36L1 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               1                65
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(484) Variable = RASAL2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASAL2 MUTATED        3     15      0      0
  RASAL2 WILD-TYPE    201    122     47      3
D484V1, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             15              122
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASAL2 MUTATED        1      7      4      0      2
  RASAL2 WILD-TYPE     38     89     40     88     78
D484V2, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              7               89
  CLUS_3              4               40
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASAL2 MUTATED        0      6      4      4      1
  RASAL2 WILD-TYPE     26     73     69     78     57
D484V3, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              6               73
  CLUS_3              4               69
  CLUS_4              4               78
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASAL2 MUTATED        4      3      5      3
  RASAL2 WILD-TYPE    123     48     66     66
D484V4, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              3               48
  CLUS_3              5               66
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASAL2 MUTATED        1      3     11      0      2
  RASAL2 WILD-TYPE     83     82     74     69     45
D484V5, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               82
  CLUS_3             11               74
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RASAL2 MUTATED        4      2      2      9
  RASAL2 WILD-TYPE     91     72    119     71
D484V6, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              2               72
  CLUS_3              2              119
  CLUS_4              9               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RASAL2 MUTATED        4      6      3      4      1      1
  RASAL2 WILD-TYPE     48     58     69    100     39     58
D484V7, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              6               58
  CLUS_3              3               69
  CLUS_4              4              100
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RASAL2 MUTATED       13      5      1
  RASAL2 WILD-TYPE    204     70     98
D484V8, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1             13              204
  CLUS_2              5               70
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RASAL2 MUTATED        5      1      7
  RASAL2 WILD-TYPE    116    107     65
D484V9, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              1              107
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RASAL2 MUTATED        5      1      3      0      4
  RASAL2 WILD-TYPE     83     65     42     55     43
D484V10, multiclass
        clus
vv       RASAL2 MUTATED RASAL2 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              1               65
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(485) Variable = GTF3C1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C1 MUTATED        4     28      3      0
  GTF3C1 WILD-TYPE    200    109     44      3
D485V1, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              4              200
  CLUS_2             28              109
  CLUS_3              3               44
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF3C1 MUTATED        2     17      4      3      2
  GTF3C1 WILD-TYPE     37     79     40     85     78
D485V2, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              2               37
  CLUS_2             17               79
  CLUS_3              4               40
  CLUS_4              3               85
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF3C1 MUTATED        1     10      8      2     10
  GTF3C1 WILD-TYPE     25     69     65     80     48
D485V3, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2             10               69
  CLUS_3              8               65
  CLUS_4              2               80
  CLUS_5             10               48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C1 MUTATED        5     14      6      6
  GTF3C1 WILD-TYPE    122     37     65     63
D485V4, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              5              122
  CLUS_2             14               37
  CLUS_3              6               65
  CLUS_4              6               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF3C1 MUTATED        1      6     19      4      4
  GTF3C1 WILD-TYPE     83     79     66     65     43
D485V5, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              6               79
  CLUS_3             19               66
  CLUS_4              4               65
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C1 MUTATED        7      7      4     16
  GTF3C1 WILD-TYPE     88     67    117     64
D485V6, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              7               88
  CLUS_2              7               67
  CLUS_3              4              117
  CLUS_4             16               64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GTF3C1 MUTATED        6     14      7      4      3      1
  GTF3C1 WILD-TYPE     46     50     65    100     37     58
D485V7, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1              6               46
  CLUS_2             14               50
  CLUS_3              7               65
  CLUS_4              4              100
  CLUS_5              3               37
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C1 MUTATED       29      3      3
  GTF3C1 WILD-TYPE    188     72     96
D485V8, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1             29              188
  CLUS_2              3               72
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C1 MUTATED       13      3     10
  GTF3C1 WILD-TYPE    108    105     62
D485V9, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1             13              108
  CLUS_2              3              105
  CLUS_3             10               62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF3C1 MUTATED       10      1      5      0     10
  GTF3C1 WILD-TYPE     78     65     40     55     37
D485V10, multiclass
        clus
vv       GTF3C1 MUTATED GTF3C1 WILD-TYPE
  CLUS_1             10               78
  CLUS_2              1               65
  CLUS_3              5               40
  CLUS_4              0               55
  CLUS_5             10               37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(486) Variable = RPS20 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS20 MUTATED        1      3      0      0
  RPS20 WILD-TYPE    203    134     47      3
D486V1, multiclass
        clus
vv       RPS20 MUTATED RPS20 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             3             134
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPS20 MUTATED        0      1      1      0      1
  RPS20 WILD-TYPE     39     95     43     88     79
D486V2, multiclass
        clus
vv       RPS20 MUTATED RPS20 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             1              95
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPS20 MUTATED        0      0      1      1      2
  RPS20 WILD-TYPE     26     79     72     81     56
D486V3, multiclass
        clus
vv       RPS20 MUTATED RPS20 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              79
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS20 MUTATED        1      1      2      0
  RPS20 WILD-TYPE    126     50     69     69
D486V4, multiclass
        clus
vv       RPS20 MUTATED RPS20 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             1              50
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPS20 MUTATED        0      2      1      1      0
  RPS20 WILD-TYPE     84     83     84     68     47
D486V5, multiclass
        clus
vv       RPS20 MUTATED RPS20 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             1              84
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPS20 MUTATED        1      2      1      0
  RPS20 WILD-TYPE     94     72    120     80
D486V6, multiclass
        clus
vv       RPS20 MUTATED RPS20 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             0              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RPS20 MUTATED        0      1      1      2      0      0
  RPS20 WILD-TYPE     52     63     71    102     40     59
D486V7, multiclass
        clus
vv       RPS20 MUTATED RPS20 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             1              63
  CLUS_3             1              71
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RPS20 MUTATED        4      0      0
  RPS20 WILD-TYPE    213     75     99
D486V8, multiclass
        clus
vv       RPS20 MUTATED RPS20 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RPS20 MUTATED        0      1      1
  RPS20 WILD-TYPE    121    107     71
D486V9, multiclass
[1] "Remove cluster labels:" "RPS20 MUTATED"         
clus
  RPS20 MUTATED RPS20 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-FP-A9TM 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134      TCGA-HF-7136 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-IN-7806 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPS20 MUTATED        1      1      0      0      0
  RPS20 WILD-TYPE     87     65     45     55     47
D486V10, multiclass
[1] "Remove cluster labels:" "RPS20 MUTATED"         
clus
  RPS20 MUTATED RPS20 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-FP-A9TM 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134      TCGA-HF-7136 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-IN-7806 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"RPS20 WILD-TYPE" "RPS20 WILD-TYPE" "RPS20 WILD-TYPE" 

Clustering(487) Variable = KIAA0748 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0748 MUTATED        5      9      1      0
  KIAA0748 WILD-TYPE    199    128     46      3
D487V1, multiclass
        clus
vv       KIAA0748 MUTATED KIAA0748 WILD-TYPE
  CLUS_1                5                199
  CLUS_2                9                128
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0748 MUTATED        0      9      3      1      2
  KIAA0748 WILD-TYPE     39     87     41     87     78
D487V2, multiclass
        clus
vv       KIAA0748 MUTATED KIAA0748 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                9                 87
  CLUS_3                3                 41
  CLUS_4                1                 87
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0748 MUTATED        2      5      2      2      2
  KIAA0748 WILD-TYPE     24     74     71     80     56
D487V3, multiclass
        clus
vv       KIAA0748 MUTATED KIAA0748 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                5                 74
  CLUS_3                2                 71
  CLUS_4                2                 80
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0748 MUTATED        5      4      4      0
  KIAA0748 WILD-TYPE    122     47     67     69
D487V4, multiclass
        clus
vv       KIAA0748 MUTATED KIAA0748 WILD-TYPE
  CLUS_1                5                122
  CLUS_2                4                 47
  CLUS_3                4                 67
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0748 MUTATED        1      4      4      5      2
  KIAA0748 WILD-TYPE     83     81     81     64     45
D487V5, multiclass
        clus
vv       KIAA0748 MUTATED KIAA0748 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                4                 81
  CLUS_3                4                 81
  CLUS_4                5                 64
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0748 MUTATED        6      2      2      6
  KIAA0748 WILD-TYPE     89     72    119     74
D487V6, multiclass
        clus
vv       KIAA0748 MUTATED KIAA0748 WILD-TYPE
  CLUS_1                6                 89
  CLUS_2                2                 72
  CLUS_3                2                119
  CLUS_4                6                 74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0748 MUTATED        4      3      4      1      2      2
  KIAA0748 WILD-TYPE     48     61     68    103     38     57
D487V7, multiclass
        clus
vv       KIAA0748 MUTATED KIAA0748 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                3                 61
  CLUS_3                4                 68
  CLUS_4                1                103
  CLUS_5                2                 38
  CLUS_6                2                 57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0748 MUTATED       13      1      2
  KIAA0748 WILD-TYPE    204     74     97
D487V8, multiclass
        clus
vv       KIAA0748 MUTATED KIAA0748 WILD-TYPE
  CLUS_1               13                204
  CLUS_2                1                 74
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0748 MUTATED        6      3      5
  KIAA0748 WILD-TYPE    115    105     67
D487V9, multiclass
        clus
vv       KIAA0748 MUTATED KIAA0748 WILD-TYPE
  CLUS_1                6                115
  CLUS_2                3                105
  CLUS_3                5                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0748 MUTATED        0      2      4      2      6
  KIAA0748 WILD-TYPE     88     64     41     53     41
D487V10, multiclass
        clus
vv       KIAA0748 MUTATED KIAA0748 WILD-TYPE
  CLUS_1                0                 88
  CLUS_2                2                 64
  CLUS_3                4                 41
  CLUS_4                2                 53
  CLUS_5                6                 41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(488) Variable = USP1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP1 MUTATED        0      5      0      0
  USP1 WILD-TYPE    204    132     47      3
D488V1, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            5            132
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP1 MUTATED        1      2      2      0      0
  USP1 WILD-TYPE     38     94     42     88     80
D488V2, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            2             94
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP1 MUTATED        0      2      1      0      1
  USP1 WILD-TYPE     26     77     72     82     57
D488V3, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP1 MUTATED        0      2      2      0
  USP1 WILD-TYPE    127     49     69     69
D488V4, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            2             49
  CLUS_3            2             69
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP1 MUTATED        0      0      4      0      0
  USP1 WILD-TYPE     84     85     81     69     47
D488V5, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            4             81
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP1 MUTATED        0      0      0      4
  USP1 WILD-TYPE     95     74    121     76
D488V6, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            0             95
  CLUS_2            0             74
  CLUS_3            0            121
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP1 MUTATED        3      1      0      1      0      0
  USP1 WILD-TYPE     49     63     72    103     40     59
D488V7, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            1             63
  CLUS_3            0             72
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP1 MUTATED        4      1      0
  USP1 WILD-TYPE    213     74     99
D488V8, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            4            213
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  USP1 MUTATED        2      1      2
  USP1 WILD-TYPE    119    107     70
D488V9, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP1 MUTATED        4      1      0      0      0
  USP1 WILD-TYPE     84     65     45     55     47
D488V10, multiclass
        clus
vv       USP1 MUTATED USP1 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(489) Variable = BRMS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRMS1 MUTATED        1      5      0      0
  BRMS1 WILD-TYPE    203    132     47      3
D489V1, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             5             132
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRMS1 MUTATED        0      3      1      1      0
  BRMS1 WILD-TYPE     39     93     43     87     80
D489V2, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRMS1 MUTATED        0      0      1      1      1
  BRMS1 WILD-TYPE     26     79     72     81     57
D489V3, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              79
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRMS1 MUTATED        0      1      1      1
  BRMS1 WILD-TYPE    127     50     70     68
D489V4, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             1              50
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRMS1 MUTATED        1      1      3      1      0
  BRMS1 WILD-TYPE     83     84     82     68     47
D489V5, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRMS1 MUTATED        2      1      0      3
  BRMS1 WILD-TYPE     93     73    121     77
D489V6, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRMS1 MUTATED        1      2      1      1      0      1
  BRMS1 WILD-TYPE     51     62     71    103     40     58
D489V7, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRMS1 MUTATED        4      1      1
  BRMS1 WILD-TYPE    213     74     98
D489V8, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRMS1 MUTATED        2      1      2
  BRMS1 WILD-TYPE    119    107     70
D489V9, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRMS1 MUTATED        1      0      1      1      2
  BRMS1 WILD-TYPE     87     66     44     54     45
D489V10, multiclass
        clus
vv       BRMS1 MUTATED BRMS1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(490) Variable = RNASEL MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASEL MUTATED        0      4      2      0
  RNASEL WILD-TYPE    204    133     45      3
D490V1, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              0              204
  CLUS_2              4              133
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNASEL MUTATED        1      3      1      0      0
  RNASEL WILD-TYPE     38     93     43     88     80
D490V2, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              1               38
  CLUS_2              3               93
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNASEL MUTATED        0      2      1      0      2
  RNASEL WILD-TYPE     26     77     72     82     56
D490V3, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASEL MUTATED        1      3      1      0
  RNASEL WILD-TYPE    126     48     70     69
D490V4, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              1              126
  CLUS_2              3               48
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNASEL MUTATED        0      1      3      0      1
  RNASEL WILD-TYPE     84     84     82     69     46
D490V5, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNASEL MUTATED        2      0      1      2
  RNASEL WILD-TYPE     93     74    120     78
D490V6, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNASEL MUTATED        2      2      1      0      1      0
  RNASEL WILD-TYPE     50     62     71    104     39     59
D490V7, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              2               50
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNASEL MUTATED        5      0      1
  RNASEL WILD-TYPE    212     75     98
D490V8, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              5              212
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNASEL MUTATED        2      1      2
  RNASEL WILD-TYPE    119    107     70
D490V9, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              2              119
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNASEL MUTATED        2      0      1      0      2
  RNASEL WILD-TYPE     86     66     44     55     45
D490V10, multiclass
        clus
vv       RNASEL MUTATED RNASEL WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(491) Variable = TIMP3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIMP3 MUTATED        3      5      1      0
  TIMP3 WILD-TYPE    201    132     46      3
D491V1, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             5             132
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIMP3 MUTATED        1      5      1      1      0
  TIMP3 WILD-TYPE     38     91     43     87     80
D491V2, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIMP3 MUTATED        0      3      4      0      0
  TIMP3 WILD-TYPE     26     76     69     82     58
D491V3, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIMP3 MUTATED        3      4      0      0
  TIMP3 WILD-TYPE    124     47     71     69
D491V4, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             4              47
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIMP3 MUTATED        2      0      4      2      1
  TIMP3 WILD-TYPE     82     85     81     67     46
D491V5, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             0              85
  CLUS_3             4              81
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TIMP3 MUTATED        2      0      4      3
  TIMP3 WILD-TYPE     93     74    117     77
D491V6, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             4             117
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TIMP3 MUTATED        4      0      3      0      0      2
  TIMP3 WILD-TYPE     48     64     69    104     40     57
D491V7, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             0              64
  CLUS_3             3              69
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIMP3 MUTATED        7      0      2
  TIMP3 WILD-TYPE    210     75     97
D491V8, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TIMP3 MUTATED        4      1      0
  TIMP3 WILD-TYPE    117    107     72
D491V9, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TIMP3 MUTATED        2      0      0      1      2
  TIMP3 WILD-TYPE     86     66     45     54     45
D491V10, multiclass
        clus
vv       TIMP3 MUTATED TIMP3 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(492) Variable = RELT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RELT MUTATED        1      6      0      0
  RELT WILD-TYPE    203    131     47      3
D492V1, multiclass
        clus
vv       RELT MUTATED RELT WILD-TYPE
  CLUS_1            1            203
  CLUS_2            6            131
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RELT MUTATED        0      6      1      0      0
  RELT WILD-TYPE     39     90     43     88     80
D492V2, multiclass
        clus
vv       RELT MUTATED RELT WILD-TYPE
  CLUS_1            0             39
  CLUS_2            6             90
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RELT MUTATED        0      1      3      1      0
  RELT WILD-TYPE     26     78     70     81     58
D492V3, multiclass
        clus
vv       RELT MUTATED RELT WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RELT MUTATED        1      3      0      1
  RELT WILD-TYPE    126     48     71     68
D492V4, multiclass
        clus
vv       RELT MUTATED RELT WILD-TYPE
  CLUS_1            1            126
  CLUS_2            3             48
  CLUS_3            0             71
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RELT MUTATED        0      1      4      0      2
  RELT WILD-TYPE     84     84     81     69     45
D492V5, multiclass
        clus
vv       RELT MUTATED RELT WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            4             81
  CLUS_4            0             69
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RELT MUTATED        0      2      0      5
  RELT WILD-TYPE     95     72    121     75
D492V6, multiclass
        clus
vv       RELT MUTATED RELT WILD-TYPE
  CLUS_1            0             95
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RELT MUTATED        4      1      0      1      1      0
  RELT WILD-TYPE     48     63     72    103     39     59
D492V7, multiclass
        clus
vv       RELT MUTATED RELT WILD-TYPE
  CLUS_1            4             48
  CLUS_2            1             63
  CLUS_3            0             72
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RELT MUTATED        5      2      0
  RELT WILD-TYPE    212     73     99
D492V8, multiclass
        clus
vv       RELT MUTATED RELT WILD-TYPE
  CLUS_1            5            212
  CLUS_2            2             73
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RELT MUTATED        4      1      1
  RELT WILD-TYPE    117    107     71
D492V9, multiclass
        clus
vv       RELT MUTATED RELT WILD-TYPE
  CLUS_1            4            117
  CLUS_2            1            107
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RELT MUTATED        3      1      0      0      2
  RELT WILD-TYPE     85     65     45     55     45
D492V10, multiclass
        clus
vv       RELT MUTATED RELT WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(493) Variable = HAUS3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS3 MUTATED        2      8      0      0
  HAUS3 WILD-TYPE    202    129     47      3
D493V1, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             8             129
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAUS3 MUTATED        1      5      1      0      2
  HAUS3 WILD-TYPE     38     91     43     88     78
D493V2, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAUS3 MUTATED        3      1      3      1      1
  HAUS3 WILD-TYPE     23     78     70     81     57
D493V3, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             1              78
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS3 MUTATED        3      4      1      1
  HAUS3 WILD-TYPE    124     47     70     68
D493V4, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAUS3 MUTATED        1      3      3      2      2
  HAUS3 WILD-TYPE     83     82     82     67     45
D493V5, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             3              82
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS3 MUTATED        5      2      1      3
  HAUS3 WILD-TYPE     90     72    120     77
D493V6, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HAUS3 MUTATED        3      5      1      0      1      1
  HAUS3 WILD-TYPE     49     59     71    104     39     58
D493V7, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             5              59
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS3 MUTATED        9      0      2
  HAUS3 WILD-TYPE    208     75     97
D493V8, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS3 MUTATED        2      1      5
  HAUS3 WILD-TYPE    119    107     67
D493V9, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAUS3 MUTATED        2      0      3      0      3
  HAUS3 WILD-TYPE     86     66     42     55     44
D493V10, multiclass
        clus
vv       HAUS3 MUTATED HAUS3 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(494) Variable = CCDC150 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC150 MUTATED        0     10      0      0
  CCDC150 WILD-TYPE    204    127     47      3
D494V1, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               0               204
  CLUS_2              10               127
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC150 MUTATED        0      8      0      0      0
  CCDC150 WILD-TYPE     39     88     44     88     80
D494V2, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               8                88
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC150 MUTATED        0      3      5      0      1
  CCDC150 WILD-TYPE     26     76     68     82     57
D494V3, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               3                76
  CLUS_3               5                68
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC150 MUTATED        0      8      1      0
  CCDC150 WILD-TYPE    127     43     70     69
D494V4, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               8                43
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC150 MUTATED        0      1      6      1      1
  CCDC150 WILD-TYPE     84     84     79     68     46
D494V5, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               6                79
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC150 MUTATED        2      1      0      6
  CCDC150 WILD-TYPE     93     73    121     74
D494V6, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC150 MUTATED        4      3      2      1      0      0
  CCDC150 WILD-TYPE     48     61     70    103     40     59
D494V7, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               3                61
  CLUS_3               2                70
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC150 MUTATED        9      0      1
  CCDC150 WILD-TYPE    208     75     98
D494V8, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               9               208
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CCDC150 MUTATED        4      0      3
  CCDC150 WILD-TYPE    117    108     69
D494V9, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               0               108
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC150 MUTATED        1      0      1      0      5
  CCDC150 WILD-TYPE     87     66     44     55     42
D494V10, multiclass
        clus
vv       CCDC150 MUTATED CCDC150 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(495) Variable = GLIPR1L2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLIPR1L2 MUTATED        1      7      4      0
  GLIPR1L2 WILD-TYPE    203    130     43      3
D495V1, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                7                130
  CLUS_3                4                 43
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLIPR1L2 MUTATED        0      6      1      2      1
  GLIPR1L2 WILD-TYPE     39     90     43     86     79
D495V2, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                6                 90
  CLUS_3                1                 43
  CLUS_4                2                 86
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLIPR1L2 MUTATED        0      5      5      0      2
  GLIPR1L2 WILD-TYPE     26     74     68     82     56
D495V3, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                5                 74
  CLUS_3                5                 68
  CLUS_4                0                 82
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLIPR1L2 MUTATED        4      5      3      0
  GLIPR1L2 WILD-TYPE    123     46     68     69
D495V4, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                4                123
  CLUS_2                5                 46
  CLUS_3                3                 68
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLIPR1L2 MUTATED        1      2      6      1      3
  GLIPR1L2 WILD-TYPE     83     83     79     68     44
D495V5, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 83
  CLUS_3                6                 79
  CLUS_4                1                 68
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLIPR1L2 MUTATED        4      3      1      5
  GLIPR1L2 WILD-TYPE     91     71    120     75
D495V6, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                4                 91
  CLUS_2                3                 71
  CLUS_3                1                120
  CLUS_4                5                 75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLIPR1L2 MUTATED        4      6      1      1      1      0
  GLIPR1L2 WILD-TYPE     48     58     71    103     39     59
D495V7, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                6                 58
  CLUS_3                1                 71
  CLUS_4                1                103
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  GLIPR1L2 MUTATED       10      1      2
  GLIPR1L2 WILD-TYPE    207     74     97
D495V8, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1               10                207
  CLUS_2                1                 74
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  GLIPR1L2 MUTATED        4      1      5
  GLIPR1L2 WILD-TYPE    117    107     67
D495V9, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                1                107
  CLUS_3                5                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLIPR1L2 MUTATED        2      1      3      0      4
  GLIPR1L2 WILD-TYPE     86     65     42     55     43
D495V10, multiclass
        clus
vv       GLIPR1L2 MUTATED GLIPR1L2 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                1                 65
  CLUS_3                3                 42
  CLUS_4                0                 55
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(496) Variable = ZNF23 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF23 MUTATED        0      2      0      0
  ZNF23 WILD-TYPE    204    135     47      3
D496V1, multiclass
[1] "Remove cluster labels:" "ZNF23 MUTATED"         
clus
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              2             389 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-4183      TCGA-BR-4184 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4257      TCGA-BR-4267 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292      TCGA-BR-4294 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362      TCGA-BR-4363 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369      TCGA-BR-4370 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453      TCGA-BR-6454 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457      TCGA-BR-6458 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8371      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4440 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4462 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2      TCGA-D7-A747 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B      TCGA-EQ-5647 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7735 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-A4BF      TCGA-FP-A8CX      TCGA-FP-A9TM      TCGA-HF-7131 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134      TCGA-HF-7136 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8238      TCGA-HU-8243 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8244      TCGA-HU-8249      TCGA-HU-8602      TCGA-HU-8604 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4G6      TCGA-HU-A4G8      TCGA-HU-A4G9      TCGA-HU-A4GC 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-HU-A4HD 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A6RO      TCGA-IN-A6RP      TCGA-IN-A6RR      TCGA-IN-A6RS 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-KB-A93G      TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-MX-A663      TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-R5-A7ZF      TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-R5-A805      TCGA-RD-A7BS      TCGA-RD-A7BT      TCGA-RD-A7BW 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A7C1      TCGA-RD-A8MV      TCGA-RD-A8MW      TCGA-RD-A8N0 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A8N1      TCGA-RD-A8N2      TCGA-RD-A8N4      TCGA-RD-A8N5 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU      TCGA-VQ-A8DV 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8DZ      TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8P3      TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8PQ      TCGA-VQ-A91Q      TCGA-VQ-A91U      TCGA-VQ-A91V 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A92D      TCGA-VQ-A94T      TCGA-VQ-AA64      TCGA-VQ-AA68 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6J      TCGA-VQ-AA6K 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-ZA-A8F6 
"ZNF23 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF23 MUTATED        0      2      0      0      0
  ZNF23 WILD-TYPE     39     94     44     88     80
D496V2, multiclass
[1] "Remove cluster labels:" "ZNF23 MUTATED"         
clus
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              2             345 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8060 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8081 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8373      TCGA-BR-8380 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J4      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A4MJ      TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-5716 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2      TCGA-D7-A747 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B      TCGA-EQ-5647 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7735 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-A4BF      TCGA-FP-A8CX      TCGA-FP-A9TM      TCGA-HF-7131 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134      TCGA-HF-7136 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8238      TCGA-HU-8243 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8244      TCGA-HU-8249      TCGA-HU-8602      TCGA-HU-8604 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4G6      TCGA-HU-A4G8      TCGA-HU-A4G9      TCGA-HU-A4GC 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-HU-A4HD 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A6RO      TCGA-IN-A6RP      TCGA-IN-A6RR      TCGA-IN-A6RS 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-KB-A93G      TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-MX-A663      TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-R5-A7ZF      TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-R5-A805      TCGA-RD-A7BS      TCGA-RD-A7BT      TCGA-RD-A7BW 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A7C1      TCGA-RD-A8MV      TCGA-RD-A8MW      TCGA-RD-A8N0 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A8N1      TCGA-RD-A8N2      TCGA-RD-A8N4      TCGA-RD-A8N5 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU      TCGA-VQ-A8DV 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8DZ      TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8P3      TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8PQ      TCGA-VQ-A91Q      TCGA-VQ-A91U      TCGA-VQ-A91V 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A92D      TCGA-VQ-A94T      TCGA-VQ-AA64      TCGA-VQ-AA68 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6J      TCGA-VQ-AA6K 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-ZA-A8F6 
"ZNF23 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF23 MUTATED        0      0      1      1      0
  ZNF23 WILD-TYPE     26     79     72     81     58
D496V3, multiclass
[1] "Remove cluster labels:" "ZNF23 MUTATED"         
clus
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              2             316 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-4183      TCGA-BR-4184 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4257      TCGA-BR-4267 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292      TCGA-BR-4294 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362      TCGA-BR-4363 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369      TCGA-BR-4370 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453      TCGA-BR-6454 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457      TCGA-BR-6458 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566      TCGA-BR-6705 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709      TCGA-BR-6710 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7704 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8060      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8371      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J5      TCGA-BR-A4J6 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300      TCGA-CG-4301 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442      TCGA-CG-4443 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT      TCGA-D7-A4YU 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A6F0      TCGA-D7-A748      TCGA-EQ-8122      TCGA-EQ-A4SO 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-F1-A72C      TCGA-FP-7916      TCGA-FP-7998      TCGA-HF-7131 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134      TCGA-HF-7136 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8602      TCGA-HU-8608 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4GF      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4HD 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RO 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A6RR      TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A7NU      TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-KB-A6F5      TCGA-KB-A93G      TCGA-MX-A5UG      TCGA-RD-A7BS 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A7BT      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-SW-A7EA 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-AA64 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF23 MUTATED        0      1      0      1
  ZNF23 WILD-TYPE    127     50     71     68
D496V4, multiclass
[1] "Remove cluster labels:" "ZNF23 MUTATED"         
clus
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              2             316 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-4183      TCGA-BR-4184 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4257      TCGA-BR-4267 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292      TCGA-BR-4294 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362      TCGA-BR-4363 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369      TCGA-BR-4370 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453      TCGA-BR-6454 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457      TCGA-BR-6458 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566      TCGA-BR-6705 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709      TCGA-BR-6710 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7704 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8060      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8371      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J5      TCGA-BR-A4J6 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300      TCGA-CG-4301 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442      TCGA-CG-4443 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT      TCGA-D7-A4YU 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A6F0      TCGA-D7-A748      TCGA-EQ-8122      TCGA-EQ-A4SO 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-F1-A72C      TCGA-FP-7916      TCGA-FP-7998      TCGA-HF-7131 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134      TCGA-HF-7136 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8602      TCGA-HU-8608 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4GF      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4HD 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RO 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A6RR      TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A7NU      TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-KB-A6F5      TCGA-KB-A93G      TCGA-MX-A5UG      TCGA-RD-A7BS 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A7BT      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-SW-A7EA 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-AA64 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF23 MUTATED        0      1      2      0      0
  ZNF23 WILD-TYPE     84     84     83     69     47
D496V5, multiclass
        clus
vv       ZNF23 MUTATED ZNF23 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             2              83
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF23 MUTATED        0      1      0      2
  ZNF23 WILD-TYPE     95     73    121     78
D496V6, multiclass
        clus
vv       ZNF23 MUTATED ZNF23 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF23 MUTATED        1      0      0      2      0      0
  ZNF23 WILD-TYPE     51     64     72    102     40     59
D496V7, multiclass
        clus
vv       ZNF23 MUTATED ZNF23 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             0              64
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF23 MUTATED        2      1      0
  ZNF23 WILD-TYPE    215     74     99
D496V8, multiclass
        clus
vv       ZNF23 MUTATED ZNF23 WILD-TYPE
  CLUS_1             2             215
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZNF23 MUTATED        2      0      0
  ZNF23 WILD-TYPE    119    108     72
D496V9, multiclass
[1] "Remove cluster labels:" "ZNF23 MUTATED"         
clus
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A9TM 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134      TCGA-HF-7136 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-IN-7806 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF23 MUTATED        1      0      0      0      1
  ZNF23 WILD-TYPE     87     66     45     55     46
D496V10, multiclass
[1] "Remove cluster labels:" "ZNF23 MUTATED"         
clus
  ZNF23 MUTATED ZNF23 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A9TM 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134      TCGA-HF-7136 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-IN-7806 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" "ZNF23 WILD-TYPE" 

Clustering(497) Variable = OSGEPL1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSGEPL1 MUTATED        1      2      1      0
  OSGEPL1 WILD-TYPE    203    135     46      3
D497V1, multiclass
        clus
vv       OSGEPL1 MUTATED OSGEPL1 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               2               135
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSGEPL1 MUTATED        0      1      2      1      0
  OSGEPL1 WILD-TYPE     39     95     42     87     80
D497V2, multiclass
        clus
vv       OSGEPL1 MUTATED OSGEPL1 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               1                95
  CLUS_3               2                42
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSGEPL1 MUTATED        0      2      0      0      2
  OSGEPL1 WILD-TYPE     26     77     73     82     56
D497V3, multiclass
        clus
vv       OSGEPL1 MUTATED OSGEPL1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               0                73
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSGEPL1 MUTATED        0      2      2      0
  OSGEPL1 WILD-TYPE    127     49     69     69
D497V4, multiclass
        clus
vv       OSGEPL1 MUTATED OSGEPL1 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               2                49
  CLUS_3               2                69
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSGEPL1 MUTATED        1      0      2      0      0
  OSGEPL1 WILD-TYPE     83     85     83     69     47
D497V5, multiclass
        clus
vv       OSGEPL1 MUTATED OSGEPL1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                85
  CLUS_3               2                83
  CLUS_4               0                69
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSGEPL1 MUTATED        0      1      1      1
  OSGEPL1 WILD-TYPE     95     73    120     79
D497V6, multiclass
        clus
vv       OSGEPL1 MUTATED OSGEPL1 WILD-TYPE
  CLUS_1               0                95
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               1                79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OSGEPL1 MUTATED        0      1      1      1      0      1
  OSGEPL1 WILD-TYPE     52     63     71    103     40     58
D497V7, multiclass
        clus
vv       OSGEPL1 MUTATED OSGEPL1 WILD-TYPE
  CLUS_1               0                52
  CLUS_2               1                63
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OSGEPL1 MUTATED        2      1      1
  OSGEPL1 WILD-TYPE    215     74     98
D497V8, multiclass
        clus
vv       OSGEPL1 MUTATED OSGEPL1 WILD-TYPE
  CLUS_1               2               215
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  OSGEPL1 MUTATED        1      0      3
  OSGEPL1 WILD-TYPE    120    108     69
D497V9, multiclass
        clus
vv       OSGEPL1 MUTATED OSGEPL1 WILD-TYPE
  CLUS_1               1               120
  CLUS_2               0               108
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSGEPL1 MUTATED        0      1      1      1      1
  OSGEPL1 WILD-TYPE     88     65     44     54     46
D497V10, multiclass
        clus
vv       OSGEPL1 MUTATED OSGEPL1 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               1                65
  CLUS_3               1                44
  CLUS_4               1                54
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(498) Variable = EFHA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHA2 MUTATED        2     11      1      0
  EFHA2 WILD-TYPE    202    126     46      3
D498V1, multiclass
        clus
vv       EFHA2 MUTATED EFHA2 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHA2 MUTATED        1      9      1      1      1
  EFHA2 WILD-TYPE     38     87     43     87     79
D498V2, multiclass
        clus
vv       EFHA2 MUTATED EFHA2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             9              87
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHA2 MUTATED        1      3      3      2      0
  EFHA2 WILD-TYPE     25     76     70     80     58
D498V3, multiclass
        clus
vv       EFHA2 MUTATED EFHA2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHA2 MUTATED        2      3      2      2
  EFHA2 WILD-TYPE    125     48     69     67
D498V4, multiclass
        clus
vv       EFHA2 MUTATED EFHA2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             3              48
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHA2 MUTATED        0      1      8      4      1
  EFHA2 WILD-TYPE     84     84     77     65     46
D498V5, multiclass
        clus
vv       EFHA2 MUTATED EFHA2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             8              77
  CLUS_4             4              65
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHA2 MUTATED        6      2      0      6
  EFHA2 WILD-TYPE     89     72    121     74
D498V6, multiclass
        clus
vv       EFHA2 MUTATED EFHA2 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EFHA2 MUTATED        3      2      5      2      1      1
  EFHA2 WILD-TYPE     49     62     67    102     39     58
D498V7, multiclass
        clus
vv       EFHA2 MUTATED EFHA2 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             2              62
  CLUS_3             5              67
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHA2 MUTATED       11      1      2
  EFHA2 WILD-TYPE    206     74     97
D498V8, multiclass
        clus
vv       EFHA2 MUTATED EFHA2 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHA2 MUTATED        6      2      4
  EFHA2 WILD-TYPE    115    106     68
D498V9, multiclass
        clus
vv       EFHA2 MUTATED EFHA2 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHA2 MUTATED        4      0      2      1      5
  EFHA2 WILD-TYPE     84     66     43     54     42
D498V10, multiclass
        clus
vv       EFHA2 MUTATED EFHA2 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(499) Variable = CDH24 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH24 MUTATED        4      9      1      0
  CDH24 WILD-TYPE    200    128     46      3
D499V1, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             4             200
  CLUS_2             9             128
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH24 MUTATED        2      7      1      1      0
  CDH24 WILD-TYPE     37     89     43     87     80
D499V2, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             7              89
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH24 MUTATED        1      4      1      2      1
  CDH24 WILD-TYPE     25     75     72     80     57
D499V3, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             1              72
  CLUS_4             2              80
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH24 MUTATED        2      4      2      1
  CDH24 WILD-TYPE    125     47     69     68
D499V4, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH24 MUTATED        0      2      6      3      2
  CDH24 WILD-TYPE     84     83     79     66     45
D499V5, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             6              79
  CLUS_4             3              66
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH24 MUTATED        4      1      0      8
  CDH24 WILD-TYPE     91     73    121     72
D499V6, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDH24 MUTATED        4      3      3      2      2      0
  CDH24 WILD-TYPE     48     61     69    102     38     59
D499V7, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             3              61
  CLUS_3             3              69
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH24 MUTATED       12      0      2
  CDH24 WILD-TYPE    205     75     97
D499V8, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH24 MUTATED        4      4      2
  CDH24 WILD-TYPE    117    104     70
D499V9, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             4             104
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH24 MUTATED        4      0      0      1      5
  CDH24 WILD-TYPE     84     66     45     54     42
D499V10, multiclass
        clus
vv       CDH24 MUTATED CDH24 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             1              54
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(500) Variable = C6ORF150 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF150 MUTATED        4      4      0      0
  C6ORF150 WILD-TYPE    200    133     47      3
D500V1, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                4                200
  CLUS_2                4                133
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF150 MUTATED        1      3      0      2      0
  C6ORF150 WILD-TYPE     38     93     44     86     80
D500V2, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                3                 93
  CLUS_3                0                 44
  CLUS_4                2                 86
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF150 MUTATED        0      3      1      1      2
  C6ORF150 WILD-TYPE     26     76     72     81     56
D500V3, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                3                 76
  CLUS_3                1                 72
  CLUS_4                1                 81
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF150 MUTATED        2      3      2      0
  C6ORF150 WILD-TYPE    125     48     69     69
D500V4, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                3                 48
  CLUS_3                2                 69
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF150 MUTATED        1      1      6      0      0
  C6ORF150 WILD-TYPE     83     84     79     69     47
D500V5, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                1                 84
  CLUS_3                6                 79
  CLUS_4                0                 69
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6ORF150 MUTATED        2      0      1      5
  C6ORF150 WILD-TYPE     93     74    120     75
D500V6, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                0                 74
  CLUS_3                1                120
  CLUS_4                5                 75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C6ORF150 MUTATED        4      2      1      0      0      1
  C6ORF150 WILD-TYPE     48     62     71    104     40     58
D500V7, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                2                 62
  CLUS_3                1                 71
  CLUS_4                0                104
  CLUS_5                0                 40
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF150 MUTATED        6      0      2
  C6ORF150 WILD-TYPE    211     75     97
D500V8, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                6                211
  CLUS_2                0                 75
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C6ORF150 MUTATED        4      1      0
  C6ORF150 WILD-TYPE    117    107     72
D500V9, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                1                107
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6ORF150 MUTATED        2      0      0      2      1
  C6ORF150 WILD-TYPE     86     66     45     53     46
D500V10, multiclass
        clus
vv       C6ORF150 MUTATED C6ORF150 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                0                 66
  CLUS_3                0                 45
  CLUS_4                2                 53
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(501) Variable = MGA MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGA MUTATED        3     20      4      0
  MGA WILD-TYPE    201    117     43      3
D501V1, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           3           201
  CLUS_2          20           117
  CLUS_3           4            43
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGA MUTATED        3     13      6      2      0
  MGA WILD-TYPE     36     83     38     86     80
D501V2, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           3            36
  CLUS_2          13            83
  CLUS_3           6            38
  CLUS_4           2            86
  CLUS_5           0            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGA MUTATED        1     11      9      0      5
  MGA WILD-TYPE     25     68     64     82     53
D501V3, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           1            25
  CLUS_2          11            68
  CLUS_3           9            64
  CLUS_4           0            82
  CLUS_5           5            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGA MUTATED        7     10      8      1
  MGA WILD-TYPE    120     41     63     68
D501V4, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           7           120
  CLUS_2          10            41
  CLUS_3           8            63
  CLUS_4           1            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGA MUTATED        1      2     17      3      3
  MGA WILD-TYPE     83     83     68     66     44
D501V5, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           1            83
  CLUS_2           2            83
  CLUS_3          17            68
  CLUS_4           3            66
  CLUS_5           3            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGA MUTATED        6      2      5     13
  MGA WILD-TYPE     89     72    116     67
D501V6, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           6            89
  CLUS_2           2            72
  CLUS_3           5           116
  CLUS_4          13            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MGA MUTATED        6     11      7      2      1      1
  MGA WILD-TYPE     46     53     65    102     39     58
D501V7, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           6            46
  CLUS_2          11            53
  CLUS_3           7            65
  CLUS_4           2           102
  CLUS_5           1            39
  CLUS_6           1            58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MGA MUTATED       26      1      1
  MGA WILD-TYPE    191     74     98
D501V8, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1          26           191
  CLUS_2           1            74
  CLUS_3           1            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  MGA MUTATED        8      1     11
  MGA WILD-TYPE    113    107     61
D501V9, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           8           113
  CLUS_2           1           107
  CLUS_3          11            61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGA MUTATED        6      1      6      1      6
  MGA WILD-TYPE     82     65     39     54     41
D501V10, multiclass
        clus
vv       MGA MUTATED MGA WILD-TYPE
  CLUS_1           6            82
  CLUS_2           1            65
  CLUS_3           6            39
  CLUS_4           1            54
  CLUS_5           6            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(502) Variable = SH3RF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH3RF1 MUTATED        1     11      0      0
  SH3RF1 WILD-TYPE    203    126     47      3
D502V1, multiclass
        clus
vv       SH3RF1 MUTATED SH3RF1 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             11              126
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3RF1 MUTATED        0      7      2      0      1
  SH3RF1 WILD-TYPE     39     89     42     88     79
D502V2, multiclass
        clus
vv       SH3RF1 MUTATED SH3RF1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              7               89
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3RF1 MUTATED        0      4      2      1      2
  SH3RF1 WILD-TYPE     26     75     71     81     56
D502V3, multiclass
        clus
vv       SH3RF1 MUTATED SH3RF1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH3RF1 MUTATED        0      3      4      2
  SH3RF1 WILD-TYPE    127     48     67     67
D502V4, multiclass
        clus
vv       SH3RF1 MUTATED SH3RF1 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              3               48
  CLUS_3              4               67
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3RF1 MUTATED        0      3      9      0      0
  SH3RF1 WILD-TYPE     84     82     76     69     47
D502V5, multiclass
        clus
vv       SH3RF1 MUTATED SH3RF1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3              9               76
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SH3RF1 MUTATED        1      5      1      5
  SH3RF1 WILD-TYPE     94     69    120     75
D502V6, multiclass
        clus
vv       SH3RF1 MUTATED SH3RF1 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              5               69
  CLUS_3              1              120
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SH3RF1 MUTATED        2      5      3      1      1      0
  SH3RF1 WILD-TYPE     50     59     69    103     39     59
D502V7, multiclass
        clus
vv       SH3RF1 MUTATED SH3RF1 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              5               59
  CLUS_3              3               69
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SH3RF1 MUTATED        9      3      0
  SH3RF1 WILD-TYPE    208     72     99
D502V8, multiclass
        clus
vv       SH3RF1 MUTATED SH3RF1 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              3               72
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SH3RF1 MUTATED        5      1      4
  SH3RF1 WILD-TYPE    116    107     68
D502V9, multiclass
        clus
vv       SH3RF1 MUTATED SH3RF1 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              1              107
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SH3RF1 MUTATED        4      1      1      0      4
  SH3RF1 WILD-TYPE     84     65     44     55     43
D502V10, multiclass
        clus
vv       SH3RF1 MUTATED SH3RF1 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(503) Variable = HTR1E MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR1E MUTATED        4      7      1      0
  HTR1E WILD-TYPE    200    130     46      3
D503V1, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             4             200
  CLUS_2             7             130
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTR1E MUTATED        2      7      0      2      0
  HTR1E WILD-TYPE     37     89     44     86     80
D503V2, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             2              37
  CLUS_2             7              89
  CLUS_3             0              44
  CLUS_4             2              86
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTR1E MUTATED        1      6      3      0      2
  HTR1E WILD-TYPE     25     73     70     82     56
D503V3, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             1              25
  CLUS_2             6              73
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR1E MUTATED        4      6      2      0
  HTR1E WILD-TYPE    123     45     69     69
D503V4, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             4             123
  CLUS_2             6              45
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTR1E MUTATED        2      0      3      3      1
  HTR1E WILD-TYPE     82     85     82     66     46
D503V5, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             2              82
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTR1E MUTATED        4      0      4      1
  HTR1E WILD-TYPE     91     74    117     79
D503V6, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             4              91
  CLUS_2             0              74
  CLUS_3             4             117
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HTR1E MUTATED        3      2      4      0      2      1
  HTR1E WILD-TYPE     49     62     68    104     38     58
D503V7, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             3              49
  CLUS_2             2              62
  CLUS_3             4              68
  CLUS_4             0             104
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR1E MUTATED       11      0      1
  HTR1E WILD-TYPE    206     75     98
D503V8, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1            11             206
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTR1E MUTATED        6      1      4
  HTR1E WILD-TYPE    115    107     68
D503V9, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTR1E MUTATED        6      0      2      1      2
  HTR1E WILD-TYPE     82     66     43     54     45
D503V10, multiclass
        clus
vv       HTR1E MUTATED HTR1E WILD-TYPE
  CLUS_1             6              82
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(504) Variable = FLNB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLNB MUTATED        4     19      5      0
  FLNB WILD-TYPE    200    118     42      3
D504V1, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            4            200
  CLUS_2           19            118
  CLUS_3            5             42
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLNB MUTATED        3     16      2      2      2
  FLNB WILD-TYPE     36     80     42     86     78
D504V2, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            3             36
  CLUS_2           16             80
  CLUS_3            2             42
  CLUS_4            2             86
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLNB MUTATED        1     10      5      3      5
  FLNB WILD-TYPE     25     69     68     79     53
D504V3, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            1             25
  CLUS_2           10             69
  CLUS_3            5             68
  CLUS_4            3             79
  CLUS_5            5             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLNB MUTATED        6     10      5      3
  FLNB WILD-TYPE    121     41     66     66
D504V4, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            6            121
  CLUS_2           10             41
  CLUS_3            5             66
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLNB MUTATED        2      4     14      4      2
  FLNB WILD-TYPE     82     81     71     65     45
D504V5, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            2             82
  CLUS_2            4             81
  CLUS_3           14             71
  CLUS_4            4             65
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLNB MUTATED        5      3      4     14
  FLNB WILD-TYPE     90     71    117     66
D504V6, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            5             90
  CLUS_2            3             71
  CLUS_3            4            117
  CLUS_4           14             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FLNB MUTATED        8      5      5      6      3      1
  FLNB WILD-TYPE     44     59     67     98     37     58
D504V7, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            8             44
  CLUS_2            5             59
  CLUS_3            5             67
  CLUS_4            6             98
  CLUS_5            3             37
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLNB MUTATED       24      2      2
  FLNB WILD-TYPE    193     73     97
D504V8, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1           24            193
  CLUS_2            2             73
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FLNB MUTATED       11      7      4
  FLNB WILD-TYPE    110    101     68
D504V9, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1           11            110
  CLUS_2            7            101
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLNB MUTATED        7      2      2      2      9
  FLNB WILD-TYPE     81     64     43     53     38
D504V10, multiclass
        clus
vv       FLNB MUTATED FLNB WILD-TYPE
  CLUS_1            7             81
  CLUS_2            2             64
  CLUS_3            2             43
  CLUS_4            2             53
  CLUS_5            9             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(505) Variable = NCAPH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPH MUTATED        2      9      0      0
  NCAPH WILD-TYPE    202    128     47      3
D505V1, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             2             202
  CLUS_2             9             128
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCAPH MUTATED        0      5      0      1      2
  NCAPH WILD-TYPE     39     91     44     87     78
D505V2, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCAPH MUTATED        3      3      3      1      1
  NCAPH WILD-TYPE     23     76     70     81     57
D505V3, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             3              23
  CLUS_2             3              76
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPH MUTATED        3      5      2      1
  NCAPH WILD-TYPE    124     46     69     68
D505V4, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             3             124
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCAPH MUTATED        0      3      5      2      0
  NCAPH WILD-TYPE     84     82     80     67     47
D505V5, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             5              80
  CLUS_4             2              67
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAPH MUTATED        2      2      2      4
  NCAPH WILD-TYPE     93     72    119     76
D505V6, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NCAPH MUTATED        3      7      0      2      0      0
  NCAPH WILD-TYPE     49     57     72    102     40     59
D505V7, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             3              49
  CLUS_2             7              57
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCAPH MUTATED        8      2      2
  NCAPH WILD-TYPE    209     73     97
D505V8, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             8             209
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NCAPH MUTATED        2      1      4
  NCAPH WILD-TYPE    119    107     68
D505V9, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCAPH MUTATED        0      1      4      0      2
  NCAPH WILD-TYPE     88     65     41     55     45
D505V10, multiclass
        clus
vv       NCAPH MUTATED NCAPH WILD-TYPE
  CLUS_1             0              88
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(506) Variable = SLFN13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN13 MUTATED        1      8      0      0
  SLFN13 WILD-TYPE    203    129     47      3
D506V1, multiclass
        clus
vv       SLFN13 MUTATED SLFN13 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              8              129
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLFN13 MUTATED        0      3      2      0      2
  SLFN13 WILD-TYPE     39     93     42     88     78
D506V2, multiclass
        clus
vv       SLFN13 MUTATED SLFN13 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLFN13 MUTATED        1      3      2      1      1
  SLFN13 WILD-TYPE     25     76     71     81     57
D506V3, multiclass
        clus
vv       SLFN13 MUTATED SLFN13 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN13 MUTATED        2      6      0      0
  SLFN13 WILD-TYPE    125     45     71     69
D506V4, multiclass
        clus
vv       SLFN13 MUTATED SLFN13 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              6               45
  CLUS_3              0               71
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLFN13 MUTATED        0      0      6      1      1
  SLFN13 WILD-TYPE     84     85     79     68     46
D506V5, multiclass
        clus
vv       SLFN13 MUTATED SLFN13 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLFN13 MUTATED        2      0      2      4
  SLFN13 WILD-TYPE     93     74    119     76
D506V6, multiclass
        clus
vv       SLFN13 MUTATED SLFN13 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0               74
  CLUS_3              2              119
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLFN13 MUTATED        1      5      2      0      1      0
  SLFN13 WILD-TYPE     51     59     70    104     39     59
D506V7, multiclass
        clus
vv       SLFN13 MUTATED SLFN13 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              5               59
  CLUS_3              2               70
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN13 MUTATED        9      0      0
  SLFN13 WILD-TYPE    208     75     99
D506V8, multiclass
        clus
vv       SLFN13 MUTATED SLFN13 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLFN13 MUTATED        2      0      4
  SLFN13 WILD-TYPE    119    108     68
D506V9, multiclass
        clus
vv       SLFN13 MUTATED SLFN13 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLFN13 MUTATED        2      0      2      0      2
  SLFN13 WILD-TYPE     86     66     43     55     45
D506V10, multiclass
        clus
vv       SLFN13 MUTATED SLFN13 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(507) Variable = GATA3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA3 MUTATED        2     14      2      0
  GATA3 WILD-TYPE    202    123     45      3
D507V1, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            14             123
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GATA3 MUTATED        3      9      2      0      1
  GATA3 WILD-TYPE     36     87     42     88     79
D507V2, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             9              87
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GATA3 MUTATED        0      4      7      1      3
  GATA3 WILD-TYPE     26     75     66     81     55
D507V3, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             7              66
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA3 MUTATED        2      7      3      3
  GATA3 WILD-TYPE    125     44     68     66
D507V4, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             7              44
  CLUS_3             3              68
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GATA3 MUTATED        1      5      6      0      5
  GATA3 WILD-TYPE     83     80     79     69     42
D507V5, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             5              80
  CLUS_3             6              79
  CLUS_4             0              69
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GATA3 MUTATED        3      4      1      9
  GATA3 WILD-TYPE     92     70    120     71
D507V6, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             4              70
  CLUS_3             1             120
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GATA3 MUTATED        6      6      2      4      0      0
  GATA3 WILD-TYPE     46     58     70    100     40     59
D507V7, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             6              58
  CLUS_3             2              70
  CLUS_4             4             100
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GATA3 MUTATED       14      3      1
  GATA3 WILD-TYPE    203     72     98
D507V8, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             3              72
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GATA3 MUTATED        7      4      3
  GATA3 WILD-TYPE    114    104     69
D507V9, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             4             104
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GATA3 MUTATED        6      2      1      2      3
  GATA3 WILD-TYPE     82     64     44     53     44
D507V10, multiclass
        clus
vv       GATA3 MUTATED GATA3 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             2              64
  CLUS_3             1              44
  CLUS_4             2              53
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(508) Variable = RDBP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RDBP MUTATED        1      7      2      0
  RDBP WILD-TYPE    203    130     45      3
D508V1, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            1            203
  CLUS_2            7            130
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RDBP MUTATED        0      7      2      0      0
  RDBP WILD-TYPE     39     89     42     88     80
D508V2, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            0             39
  CLUS_2            7             89
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RDBP MUTATED        0      3      2      0      4
  RDBP WILD-TYPE     26     76     71     82     54
D508V3, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RDBP MUTATED        1      4      3      1
  RDBP WILD-TYPE    126     47     68     68
D508V4, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            1            126
  CLUS_2            4             47
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RDBP MUTATED        0      3      7      0      0
  RDBP WILD-TYPE     84     82     78     69     47
D508V5, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            7             78
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RDBP MUTATED        1      2      1      6
  RDBP WILD-TYPE     94     72    120     74
D508V6, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            1             94
  CLUS_2            2             72
  CLUS_3            1            120
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RDBP MUTATED        2      2      4      2      0      0
  RDBP WILD-TYPE     50     62     68    102     40     59
D508V7, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            2             50
  CLUS_2            2             62
  CLUS_3            4             68
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RDBP MUTATED        9      1      0
  RDBP WILD-TYPE    208     74     99
D508V8, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            9            208
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RDBP MUTATED        3      2      3
  RDBP WILD-TYPE    118    106     69
D508V9, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            3            118
  CLUS_2            2            106
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RDBP MUTATED        3      1      0      0      4
  RDBP WILD-TYPE     85     65     45     55     43
D508V10, multiclass
        clus
vv       RDBP MUTATED RDBP WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(509) Variable = TNRC6C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6C MUTATED        1     12      1      0
  TNRC6C WILD-TYPE    203    125     46      3
D509V1, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              1              203
  CLUS_2             12              125
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC6C MUTATED        1      7      2      0      1
  TNRC6C WILD-TYPE     38     89     42     88     79
D509V2, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              1               38
  CLUS_2              7               89
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC6C MUTATED        2      2      3      0      3
  TNRC6C WILD-TYPE     24     77     70     82     55
D509V3, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              2               24
  CLUS_2              2               77
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6C MUTATED        4      5      1      0
  TNRC6C WILD-TYPE    123     46     70     69
D509V4, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              4              123
  CLUS_2              5               46
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC6C MUTATED        0      0      9      2      4
  TNRC6C WILD-TYPE     84     85     76     67     43
D509V5, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              9               76
  CLUS_4              2               67
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC6C MUTATED        3      0      1     11
  TNRC6C WILD-TYPE     92     74    120     69
D509V6, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              3               92
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4             11               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNRC6C MUTATED        5      7      2      1      0      0
  TNRC6C WILD-TYPE     47     57     70    103     40     59
D509V7, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              5               47
  CLUS_2              7               57
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6C MUTATED       15      0      0
  TNRC6C WILD-TYPE    202     75     99
D509V8, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1             15              202
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC6C MUTATED        5      0      4
  TNRC6C WILD-TYPE    116    108     68
D509V9, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              5              116
  CLUS_2              0              108
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC6C MUTATED        2      0      3      0      4
  TNRC6C WILD-TYPE     86     66     42     55     43
D509V10, multiclass
        clus
vv       TNRC6C MUTATED TNRC6C WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(510) Variable = ZNF292 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF292 MUTATED        3     21      4      0
  ZNF292 WILD-TYPE    201    116     43      3
D510V1, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             21              116
  CLUS_3              4               43
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF292 MUTATED        3     15      4      1      1
  ZNF292 WILD-TYPE     36     81     40     87     79
D510V2, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              3               36
  CLUS_2             15               81
  CLUS_3              4               40
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF292 MUTATED        2      8      8      2      6
  ZNF292 WILD-TYPE     24     71     65     80     52
D510V3, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              8               71
  CLUS_3              8               65
  CLUS_4              2               80
  CLUS_5              6               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF292 MUTATED        5     15      4      2
  ZNF292 WILD-TYPE    122     36     67     67
D510V4, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              5              122
  CLUS_2             15               36
  CLUS_3              4               67
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF292 MUTATED        2      4     18      2      2
  ZNF292 WILD-TYPE     82     81     67     67     45
D510V5, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              4               81
  CLUS_3             18               67
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF292 MUTATED        7      3      4     14
  ZNF292 WILD-TYPE     88     71    117     66
D510V6, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              7               88
  CLUS_2              3               71
  CLUS_3              4              117
  CLUS_4             14               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF292 MUTATED        8      8      4      5      2      2
  ZNF292 WILD-TYPE     44     56     68     99     38     57
D510V7, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              8               44
  CLUS_2              8               56
  CLUS_3              4               68
  CLUS_4              5               99
  CLUS_5              2               38
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF292 MUTATED       23      3      3
  ZNF292 WILD-TYPE    194     72     96
D510V8, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1             23              194
  CLUS_2              3               72
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF292 MUTATED       11      3      7
  ZNF292 WILD-TYPE    110    105     65
D510V9, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1             11              110
  CLUS_2              3              105
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF292 MUTATED        7      1      5      1      7
  ZNF292 WILD-TYPE     81     65     40     54     40
D510V10, multiclass
        clus
vv       ZNF292 MUTATED ZNF292 WILD-TYPE
  CLUS_1              7               81
  CLUS_2              1               65
  CLUS_3              5               40
  CLUS_4              1               54
  CLUS_5              7               40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(511) Variable = TPTE2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        9      6      2      0
  TPTE2 WILD-TYPE    195    131     45      3
D511V1, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             9             195
  CLUS_2             6             131
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE2 MUTATED        2      5      0      7      1
  TPTE2 WILD-TYPE     37     91     44     81     79
D511V2, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             7              81
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE2 MUTATED        3      4      4      1      3
  TPTE2 WILD-TYPE     23     75     69     81     55
D511V3, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             4              75
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        6      5      3      1
  TPTE2 WILD-TYPE    121     46     68     68
D511V4, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             6             121
  CLUS_2             5              46
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE2 MUTATED        5      1      5      1      4
  TPTE2 WILD-TYPE     79     84     80     68     43
D511V5, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             5              79
  CLUS_2             1              84
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        4      0      3      9
  TPTE2 WILD-TYPE     91     74    118     71
D511V6, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             0              74
  CLUS_3             3             118
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TPTE2 MUTATED        3      4      2      1      2      4
  TPTE2 WILD-TYPE     49     60     70    103     38     55
D511V7, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             4              60
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             2              38
  CLUS_6             4              55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED       11      0      5
  TPTE2 WILD-TYPE    206     75     94
D511V8, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             0              75
  CLUS_3             5              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        6      2      4
  TPTE2 WILD-TYPE    115    106     68
D511V9, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPTE2 MUTATED        4      0      3      2      3
  TPTE2 WILD-TYPE     84     66     42     53     44
D511V10, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             2              53
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(512) Variable = FBXO48 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO48 MUTATED        1      3      0      0
  FBXO48 WILD-TYPE    203    134     47      3
D512V1, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              3              134
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO48 MUTATED        1      2      0      1      0
  FBXO48 WILD-TYPE     38     94     44     87     80
D512V2, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              2               94
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO48 MUTATED        1      3      0      0      0
  FBXO48 WILD-TYPE     25     76     73     82     58
D512V3, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              0               73
  CLUS_4              0               82
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO48 MUTATED        1      2      1      0
  FBXO48 WILD-TYPE    126     49     70     69
D512V4, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO48 MUTATED        1      0      2      1      1
  FBXO48 WILD-TYPE     83     85     83     68     46
D512V5, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               85
  CLUS_3              2               83
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO48 MUTATED        1      0      1      3
  FBXO48 WILD-TYPE     94     74    120     77
D512V6, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXO48 MUTATED        1      3      1      0      0      0
  FBXO48 WILD-TYPE     51     61     71    104     40     59
D512V7, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO48 MUTATED        5      0      0
  FBXO48 WILD-TYPE    212     75     99
D512V8, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO48 MUTATED        2      0      2
  FBXO48 WILD-TYPE    119    108     70
D512V9, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO48 MUTATED        1      0      1      0      2
  FBXO48 WILD-TYPE     87     66     44     55     45
D512V10, multiclass
        clus
vv       FBXO48 MUTATED FBXO48 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(513) Variable = KRTAP5-5 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-5 MUTATED        0      6      0      0
  KRTAP5-5 WILD-TYPE    204    131     47      3
D513V1, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                0                204
  CLUS_2                6                131
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP5-5 MUTATED        0      4      1      0      1
  KRTAP5-5 WILD-TYPE     39     92     43     88     79
D513V2, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                4                 92
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP5-5 MUTATED        1      3      1      0      0
  KRTAP5-5 WILD-TYPE     25     76     72     82     58
D513V3, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                3                 76
  CLUS_3                1                 72
  CLUS_4                0                 82
  CLUS_5                0                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-5 MUTATED        1      2      2      0
  KRTAP5-5 WILD-TYPE    126     49     69     69
D513V4, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                1                126
  CLUS_2                2                 49
  CLUS_3                2                 69
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP5-5 MUTATED        0      1      2      2      1
  KRTAP5-5 WILD-TYPE     84     84     83     67     46
D513V5, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                2                 83
  CLUS_4                2                 67
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRTAP5-5 MUTATED        2      0      1      3
  KRTAP5-5 WILD-TYPE     93     74    120     77
D513V6, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                0                 74
  CLUS_3                1                120
  CLUS_4                3                 77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRTAP5-5 MUTATED        2      2      2      0      0      0
  KRTAP5-5 WILD-TYPE     50     62     70    104     40     59
D513V7, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                2                 62
  CLUS_3                2                 70
  CLUS_4                0                104
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-5 MUTATED        5      1      0
  KRTAP5-5 WILD-TYPE    212     74     99
D513V8, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                5                212
  CLUS_2                1                 74
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KRTAP5-5 MUTATED        2      0      2
  KRTAP5-5 WILD-TYPE    119    108     70
D513V9, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                2                119
  CLUS_2                0                108
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRTAP5-5 MUTATED        0      0      2      0      2
  KRTAP5-5 WILD-TYPE     88     66     43     55     45
D513V10, multiclass
        clus
vv       KRTAP5-5 MUTATED KRTAP5-5 WILD-TYPE
  CLUS_1                0                 88
  CLUS_2                0                 66
  CLUS_3                2                 43
  CLUS_4                0                 55
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(514) Variable = SERPINB12 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB12 MUTATED        2      3      1      0
  SERPINB12 WILD-TYPE    202    134     46      3
D514V1, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 2                 202
  CLUS_2                 3                 134
  CLUS_3                 1                  46
  CLUS_4                 0                   3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB12 MUTATED        0      3      0      1      0
  SERPINB12 WILD-TYPE     39     93     44     87     80
D514V2, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 0                  39
  CLUS_2                 3                  93
  CLUS_3                 0                  44
  CLUS_4                 1                  87
  CLUS_5                 0                  80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB12 MUTATED        0      1      1      0      1
  SERPINB12 WILD-TYPE     26     78     72     82     57
D514V3, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 0                  26
  CLUS_2                 1                  78
  CLUS_3                 1                  72
  CLUS_4                 0                  82
  CLUS_5                 1                  57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB12 MUTATED        1      2      0      0
  SERPINB12 WILD-TYPE    126     49     71     69
D514V4, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 1                 126
  CLUS_2                 2                  49
  CLUS_3                 0                  71
  CLUS_4                 0                  69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB12 MUTATED        1      1      3      0      1
  SERPINB12 WILD-TYPE     83     84     82     69     46
D514V5, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 1                  83
  CLUS_2                 1                  84
  CLUS_3                 3                  82
  CLUS_4                 0                  69
  CLUS_5                 1                  46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB12 MUTATED        1      0      1      4
  SERPINB12 WILD-TYPE     94     74    120     76
D514V6, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 1                  94
  CLUS_2                 0                  74
  CLUS_3                 1                 120
  CLUS_4                 4                  76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERPINB12 MUTATED        2      2      1      0      0      1
  SERPINB12 WILD-TYPE     50     62     71    104     40     58
D514V7, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 2                  50
  CLUS_2                 2                  62
  CLUS_3                 1                  71
  CLUS_4                 0                 104
  CLUS_5                 0                  40
  CLUS_6                 1                  58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  SERPINB12 MUTATED        5      0      1
  SERPINB12 WILD-TYPE    212     75     98
D514V8, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 5                 212
  CLUS_2                 0                  75
  CLUS_3                 1                  98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  SERPINB12 MUTATED        2      1      1
  SERPINB12 WILD-TYPE    119    107     71
D514V9, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 2                 119
  CLUS_2                 1                 107
  CLUS_3                 1                  71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB12 MUTATED        1      0      0      0      3
  SERPINB12 WILD-TYPE     87     66     45     55     44
D514V10, multiclass
        clus
vv       SERPINB12 MUTATED SERPINB12 WILD-TYPE
  CLUS_1                 1                  87
  CLUS_2                 0                  66
  CLUS_3                 0                  45
  CLUS_4                 0                  55
  CLUS_5                 3                  44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(515) Variable = TAF7L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF7L MUTATED        1      8      0      0
  TAF7L WILD-TYPE    203    129     47      3
D515V1, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             1             203
  CLUS_2             8             129
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF7L MUTATED        0      4      3      0      2
  TAF7L WILD-TYPE     39     92     41     88     78
D515V2, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF7L MUTATED        1      5      1      1      1
  TAF7L WILD-TYPE     25     74     72     81     57
D515V3, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF7L MUTATED        1      2      4      2
  TAF7L WILD-TYPE    126     49     67     67
D515V4, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             1             126
  CLUS_2             2              49
  CLUS_3             4              67
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF7L MUTATED        0      1      7      0      0
  TAF7L WILD-TYPE     84     84     78     69     47
D515V5, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             7              78
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF7L MUTATED        2      1      2      3
  TAF7L WILD-TYPE     93     73    119     77
D515V6, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAF7L MUTATED        1      5      3      0      0      0
  TAF7L WILD-TYPE     51     59     69    104     40     59
D515V7, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             1              51
  CLUS_2             5              59
  CLUS_3             3              69
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF7L MUTATED        8      1      0
  TAF7L WILD-TYPE    209     74     99
D515V8, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             8             209
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF7L MUTATED        0      1      6
  TAF7L WILD-TYPE    121    107     66
D515V9, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             0             121
  CLUS_2             1             107
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF7L MUTATED        2      1      3      0      1
  TAF7L WILD-TYPE     86     65     42     55     46
D515V10, multiclass
        clus
vv       TAF7L MUTATED TAF7L WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(516) Variable = INTS12 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS12 MUTATED        1      5      0      0
  INTS12 WILD-TYPE    203    132     47      3
D516V1, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INTS12 MUTATED        0      3      0      1      0
  INTS12 WILD-TYPE     39     93     44     87     80
D516V2, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INTS12 MUTATED        0      1      1      2      2
  INTS12 WILD-TYPE     26     78     72     80     56
D516V3, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              1               72
  CLUS_4              2               80
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS12 MUTATED        0      4      0      2
  INTS12 WILD-TYPE    127     47     71     67
D516V4, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              4               47
  CLUS_3              0               71
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INTS12 MUTATED        0      1      3      0      1
  INTS12 WILD-TYPE     84     84     82     69     46
D516V5, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INTS12 MUTATED        1      2      0      2
  INTS12 WILD-TYPE     94     72    121     78
D516V6, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  INTS12 MUTATED        1      3      1      1      0      0
  INTS12 WILD-TYPE     51     61     71    103     40     59
D516V7, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INTS12 MUTATED        5      0      1
  INTS12 WILD-TYPE    212     75     98
D516V8, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INTS12 MUTATED        1      1      2
  INTS12 WILD-TYPE    120    107     70
D516V9, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              1              120
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INTS12 MUTATED        0      0      1      1      2
  INTS12 WILD-TYPE     88     66     44     54     45
D516V10, multiclass
        clus
vv       INTS12 MUTATED INTS12 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(517) Variable = CTSA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSA MUTATED        0      3      1      0
  CTSA WILD-TYPE    204    134     46      3
D517V1, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            0            204
  CLUS_2            3            134
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSA MUTATED        0      2      0      0      1
  CTSA WILD-TYPE     39     94     44     88     79
D517V2, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            0             39
  CLUS_2            2             94
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSA MUTATED        0      2      0      1      1
  CTSA WILD-TYPE     26     77     73     81     57
D517V3, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            0             73
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSA MUTATED        1      1      1      1
  CTSA WILD-TYPE    126     50     70     68
D517V4, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            1            126
  CLUS_2            1             50
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSA MUTATED        0      0      3      0      1
  CTSA WILD-TYPE     84     85     82     69     46
D517V5, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            3             82
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSA MUTATED        1      1      1      1
  CTSA WILD-TYPE     94     73    120     79
D517V6, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            1             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTSA MUTATED        1      3      0      0      1      0
  CTSA WILD-TYPE     51     61     72    104     39     59
D517V7, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            1             51
  CLUS_2            3             61
  CLUS_3            0             72
  CLUS_4            0            104
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSA MUTATED        3      2      0
  CTSA WILD-TYPE    214     73     99
D517V8, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            3            214
  CLUS_2            2             73
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSA MUTATED        1      0      2
  CTSA WILD-TYPE    120    108     70
D517V9, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            1            120
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSA MUTATED        1      0      1      0      1
  CTSA WILD-TYPE     87     66     44     55     46
D517V10, multiclass
        clus
vv       CTSA MUTATED CTSA WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(518) Variable = C1QA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QA MUTATED        0      5      0      0
  C1QA WILD-TYPE    204    132     47      3
D518V1, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            0            204
  CLUS_2            5            132
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1QA MUTATED        0      2      2      0      1
  C1QA WILD-TYPE     39     94     42     88     79
D518V2, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            0             39
  CLUS_2            2             94
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1QA MUTATED        0      3      0      0      0
  C1QA WILD-TYPE     26     76     73     82     58
D518V3, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            0             73
  CLUS_4            0             82
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QA MUTATED        0      1      2      0
  C1QA WILD-TYPE    127     50     69     69
D518V4, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            0            127
  CLUS_2            1             50
  CLUS_3            2             69
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1QA MUTATED        0      0      3      0      1
  C1QA WILD-TYPE     84     85     82     69     46
D518V5, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            3             82
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1QA MUTATED        0      0      1      3
  C1QA WILD-TYPE     95     74    120     77
D518V6, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            0             95
  CLUS_2            0             74
  CLUS_3            1            120
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1QA MUTATED        2      2      0      1      0      0
  C1QA WILD-TYPE     50     62     72    103     40     59
D518V7, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            2             50
  CLUS_2            2             62
  CLUS_3            0             72
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  C1QA MUTATED        3      2      0
  C1QA WILD-TYPE    214     73     99
D518V8, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            3            214
  CLUS_2            2             73
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  C1QA MUTATED        3      0      2
  C1QA WILD-TYPE    118    108     70
D518V9, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1QA MUTATED        1      1      1      0      2
  C1QA WILD-TYPE     87     65     44     55     45
D518V10, multiclass
        clus
vv       C1QA MUTATED C1QA WILD-TYPE
  CLUS_1            1             87
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(519) Variable = KCNN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNN3 MUTATED        1      9      0      0
  KCNN3 WILD-TYPE    203    128     47      3
D519V1, multiclass
        clus
vv       KCNN3 MUTATED KCNN3 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             9             128
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNN3 MUTATED        1      6      0      0      0
  KCNN3 WILD-TYPE     38     90     44     88     80
D519V2, multiclass
        clus
vv       KCNN3 MUTATED KCNN3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNN3 MUTATED        0      2      4      1      2
  KCNN3 WILD-TYPE     26     77     69     81     56
D519V3, multiclass
        clus
vv       KCNN3 MUTATED KCNN3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNN3 MUTATED        2      6      0      1
  KCNN3 WILD-TYPE    125     45     71     68
D519V4, multiclass
        clus
vv       KCNN3 MUTATED KCNN3 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             6              45
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNN3 MUTATED        0      1      5      1      2
  KCNN3 WILD-TYPE     84     84     80     68     45
D519V5, multiclass
        clus
vv       KCNN3 MUTATED KCNN3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNN3 MUTATED        1      2      0      6
  KCNN3 WILD-TYPE     94     72    121     74
D519V6, multiclass
        clus
vv       KCNN3 MUTATED KCNN3 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNN3 MUTATED        4      2      2      1      1      0
  KCNN3 WILD-TYPE     48     62     70    103     39     59
D519V7, multiclass
        clus
vv       KCNN3 MUTATED KCNN3 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             2              62
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNN3 MUTATED        6      2      2
  KCNN3 WILD-TYPE    211     73     97
D519V8, multiclass
        clus
vv       KCNN3 MUTATED KCNN3 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNN3 MUTATED        3      1      1
  KCNN3 WILD-TYPE    118    107     71
D519V9, multiclass
        clus
vv       KCNN3 MUTATED KCNN3 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNN3 MUTATED        4      1      0      0      0
  KCNN3 WILD-TYPE     84     65     45     55     47
D519V10, multiclass
        clus
vv       KCNN3 MUTATED KCNN3 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(520) Variable = NPHS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPHS1 MUTATED        6      8      1      0
  NPHS1 WILD-TYPE    198    129     46      3
D520V1, multiclass
        clus
vv       NPHS1 MUTATED NPHS1 WILD-TYPE
  CLUS_1             6             198
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPHS1 MUTATED        2      6      1      0      6
  NPHS1 WILD-TYPE     37     90     43     88     74
D520V2, multiclass
        clus
vv       NPHS1 MUTATED NPHS1 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             6              74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPHS1 MUTATED        1      1      3      3      5
  NPHS1 WILD-TYPE     25     78     70     79     53
D520V3, multiclass
        clus
vv       NPHS1 MUTATED NPHS1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             3              70
  CLUS_4             3              79
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPHS1 MUTATED        5      3      2      3
  NPHS1 WILD-TYPE    122     48     69     66
D520V4, multiclass
        clus
vv       NPHS1 MUTATED NPHS1 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             3              48
  CLUS_3             2              69
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPHS1 MUTATED        0      4      7      2      3
  NPHS1 WILD-TYPE     84     81     78     67     44
D520V5, multiclass
        clus
vv       NPHS1 MUTATED NPHS1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             4              81
  CLUS_3             7              78
  CLUS_4             2              67
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPHS1 MUTATED        3      5      3      5
  NPHS1 WILD-TYPE     92     69    118     75
D520V6, multiclass
        clus
vv       NPHS1 MUTATED NPHS1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             5              69
  CLUS_3             3             118
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NPHS1 MUTATED        5      2      1      7      1      0
  NPHS1 WILD-TYPE     47     62     71     97     39     59
D520V7, multiclass
        clus
vv       NPHS1 MUTATED NPHS1 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             7              97
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NPHS1 MUTATED       11      4      1
  NPHS1 WILD-TYPE    206     71     98
D520V8, multiclass
        clus
vv       NPHS1 MUTATED NPHS1 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             4              71
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NPHS1 MUTATED        5      6      2
  NPHS1 WILD-TYPE    116    102     70
D520V9, multiclass
        clus
vv       NPHS1 MUTATED NPHS1 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             6             102
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPHS1 MUTATED        4      3      1      1      4
  NPHS1 WILD-TYPE     84     63     44     54     43
D520V10, multiclass
        clus
vv       NPHS1 MUTATED NPHS1 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             3              63
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(521) Variable = HSP90B1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90B1 MUTATED        0      8      1      0
  HSP90B1 WILD-TYPE    204    129     46      3
D521V1, multiclass
        clus
vv       HSP90B1 MUTATED HSP90B1 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               8               129
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90B1 MUTATED        2      3      1      0      1
  HSP90B1 WILD-TYPE     37     93     43     88     79
D521V2, multiclass
        clus
vv       HSP90B1 MUTATED HSP90B1 WILD-TYPE
  CLUS_1               2                37
  CLUS_2               3                93
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90B1 MUTATED        2      1      0      1      2
  HSP90B1 WILD-TYPE     24     78     73     81     56
D521V3, multiclass
        clus
vv       HSP90B1 MUTATED HSP90B1 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               1                78
  CLUS_3               0                73
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90B1 MUTATED        3      2      0      1
  HSP90B1 WILD-TYPE    124     49     71     68
D521V4, multiclass
        clus
vv       HSP90B1 MUTATED HSP90B1 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               2                49
  CLUS_3               0                71
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90B1 MUTATED        1      0      5      2      0
  HSP90B1 WILD-TYPE     83     85     80     67     47
D521V5, multiclass
        clus
vv       HSP90B1 MUTATED HSP90B1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                85
  CLUS_3               5                80
  CLUS_4               2                67
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90B1 MUTATED        3      1      1      3
  HSP90B1 WILD-TYPE     92     73    120     77
D521V6, multiclass
        clus
vv       HSP90B1 MUTATED HSP90B1 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HSP90B1 MUTATED        3      2      1      1      1      1
  HSP90B1 WILD-TYPE     49     62     71    103     39     58
D521V7, multiclass
        clus
vv       HSP90B1 MUTATED HSP90B1 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               2                62
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HSP90B1 MUTATED        7      1      1
  HSP90B1 WILD-TYPE    210     74     98
D521V8, multiclass
        clus
vv       HSP90B1 MUTATED HSP90B1 WILD-TYPE
  CLUS_1               7               210
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HSP90B1 MUTATED        3      0      2
  HSP90B1 WILD-TYPE    118    108     70
D521V9, multiclass
        clus
vv       HSP90B1 MUTATED HSP90B1 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               0               108
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90B1 MUTATED        3      0      1      0      1
  HSP90B1 WILD-TYPE     85     66     44     55     46
D521V10, multiclass
        clus
vv       HSP90B1 MUTATED HSP90B1 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(522) Variable = P2RY4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY4 MUTATED        6      5      1      0
  P2RY4 WILD-TYPE    198    132     46      3
D522V1, multiclass
        clus
vv       P2RY4 MUTATED P2RY4 WILD-TYPE
  CLUS_1             6             198
  CLUS_2             5             132
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RY4 MUTATED        2      5      0      2      2
  P2RY4 WILD-TYPE     37     91     44     86     78
D522V2, multiclass
        clus
vv       P2RY4 MUTATED P2RY4 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             2              86
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RY4 MUTATED        1      2      3      2      0
  P2RY4 WILD-TYPE     25     77     70     80     58
D522V3, multiclass
        clus
vv       P2RY4 MUTATED P2RY4 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY4 MUTATED        5      2      1      0
  P2RY4 WILD-TYPE    122     49     70     69
D522V4, multiclass
        clus
vv       P2RY4 MUTATED P2RY4 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             2              49
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RY4 MUTATED        3      3      2      3      0
  P2RY4 WILD-TYPE     81     82     83     66     47
D522V5, multiclass
        clus
vv       P2RY4 MUTATED P2RY4 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             3              82
  CLUS_3             2              83
  CLUS_4             3              66
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY4 MUTATED        4      3      3      1
  P2RY4 WILD-TYPE     91     71    118     79
D522V6, multiclass
        clus
vv       P2RY4 MUTATED P2RY4 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             3              71
  CLUS_3             3             118
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  P2RY4 MUTATED        1      2      2      3      2      2
  P2RY4 WILD-TYPE     51     62     70    101     38     57
D522V7, multiclass
        clus
vv       P2RY4 MUTATED P2RY4 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             2              62
  CLUS_3             2              70
  CLUS_4             3             101
  CLUS_5             2              38
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RY4 MUTATED        8      1      3
  P2RY4 WILD-TYPE    209     74     96
D522V8, multiclass
        clus
vv       P2RY4 MUTATED P2RY4 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             1              74
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  P2RY4 MUTATED        5      3      3
  P2RY4 WILD-TYPE    116    105     69
D522V9, multiclass
        clus
vv       P2RY4 MUTATED P2RY4 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             3             105
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RY4 MUTATED        2      2      1      3      3
  P2RY4 WILD-TYPE     86     64     44     52     44
D522V10, multiclass
        clus
vv       P2RY4 MUTATED P2RY4 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             2              64
  CLUS_3             1              44
  CLUS_4             3              52
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(523) Variable = LRFN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRFN3 MUTATED        5     15      2      0
  LRFN3 WILD-TYPE    199    122     45      3
D523V1, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             5             199
  CLUS_2            15             122
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRFN3 MUTATED        0     15      2      0      2
  LRFN3 WILD-TYPE     39     81     42     88     78
D523V2, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2            15              81
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRFN3 MUTATED        1      8      2      1      5
  LRFN3 WILD-TYPE     25     71     71     81     53
D523V3, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             8              71
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRFN3 MUTATED        4      8      5      0
  LRFN3 WILD-TYPE    123     43     66     69
D523V4, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             8              43
  CLUS_3             5              66
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRFN3 MUTATED        1      3      9      7      1
  LRFN3 WILD-TYPE     83     82     76     62     46
D523V5, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             9              76
  CLUS_4             7              62
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRFN3 MUTATED       11      2      2      6
  LRFN3 WILD-TYPE     84     72    119     74
D523V6, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1            11              84
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRFN3 MUTATED        3      6      8      2      2      1
  LRFN3 WILD-TYPE     49     58     64    102     38     58
D523V7, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             6              58
  CLUS_3             8              64
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRFN3 MUTATED       17      1      4
  LRFN3 WILD-TYPE    200     74     95
D523V8, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1            17             200
  CLUS_2             1              74
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRFN3 MUTATED        7      3      6
  LRFN3 WILD-TYPE    114    105     66
D523V9, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             3             105
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRFN3 MUTATED        3      1      3      2      7
  LRFN3 WILD-TYPE     85     65     42     53     40
D523V10, multiclass
        clus
vv       LRFN3 MUTATED LRFN3 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             2              53
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(524) Variable = SMARCB1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        1      9      3      0
  SMARCB1 WILD-TYPE    203    128     44      3
D524V1, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               9               128
  CLUS_3               3                44
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCB1 MUTATED        1      8      1      0      0
  SMARCB1 WILD-TYPE     38     88     43     88     80
D524V2, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               8                88
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCB1 MUTATED        0      5      6      0      1
  SMARCB1 WILD-TYPE     26     74     67     82     57
D524V3, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               5                74
  CLUS_3               6                67
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        5      3      4      0
  SMARCB1 WILD-TYPE    122     48     67     69
D524V4, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               5               122
  CLUS_2               3                48
  CLUS_3               4                67
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCB1 MUTATED        0      3      4      2      3
  SMARCB1 WILD-TYPE     84     82     81     67     44
D524V5, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               3                82
  CLUS_3               4                81
  CLUS_4               2                67
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCB1 MUTATED        4      3      0      5
  SMARCB1 WILD-TYPE     91     71    121     75
D524V6, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               3                71
  CLUS_3               0               121
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMARCB1 MUTATED        3      5      2      3      0      0
  SMARCB1 WILD-TYPE     49     59     70    101     40     59
D524V7, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               5                59
  CLUS_3               2                70
  CLUS_4               3               101
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED       11      2      0
  SMARCB1 WILD-TYPE    206     73     99
D524V8, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1              11               206
  CLUS_2               2                73
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCB1 MUTATED        2      3      2
  SMARCB1 WILD-TYPE    119    105     70
D524V9, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               3               105
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCB1 MUTATED        1      2      1      0      3
  SMARCB1 WILD-TYPE     87     64     44     55     44
D524V10, multiclass
        clus
vv       SMARCB1 MUTATED SMARCB1 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               2                64
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(525) Variable = ITGA6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA6 MUTATED        1      6      2      0
  ITGA6 WILD-TYPE    203    131     45      3
D525V1, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             6             131
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGA6 MUTATED        1      3      1      0      1
  ITGA6 WILD-TYPE     38     93     43     88     79
D525V2, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGA6 MUTATED        0      3      2      0      4
  ITGA6 WILD-TYPE     26     76     71     82     54
D525V3, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA6 MUTATED        1      6      2      0
  ITGA6 WILD-TYPE    126     45     69     69
D525V4, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             6              45
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGA6 MUTATED        0      0      7      1      1
  ITGA6 WILD-TYPE     84     85     78     68     46
D525V5, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             7              78
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGA6 MUTATED        1      0      2      6
  ITGA6 WILD-TYPE     94     74    119     74
D525V6, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             2             119
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ITGA6 MUTATED        2      3      4      0      0      0
  ITGA6 WILD-TYPE     50     61     68    104     40     59
D525V7, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             4              68
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA6 MUTATED        8      1      0
  ITGA6 WILD-TYPE    209     74     99
D525V8, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGA6 MUTATED        3      0      2
  ITGA6 WILD-TYPE    118    108     70
D525V9, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGA6 MUTATED        1      0      1      0      3
  ITGA6 WILD-TYPE     87     66     44     55     44
D525V10, multiclass
        clus
vv       ITGA6 MUTATED ITGA6 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(526) Variable = TRIP11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP11 MUTATED        4      9      0      0
  TRIP11 WILD-TYPE    200    128     47      3
D526V1, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              4              200
  CLUS_2              9              128
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP11 MUTATED        1      6      2      2      1
  TRIP11 WILD-TYPE     38     90     42     86     79
D526V2, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               90
  CLUS_3              2               42
  CLUS_4              2               86
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP11 MUTATED        2      3      6      0      1
  TRIP11 WILD-TYPE     24     76     67     82     57
D526V3, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              3               76
  CLUS_3              6               67
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP11 MUTATED        4      6      2      0
  TRIP11 WILD-TYPE    123     45     69     69
D526V4, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              6               45
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP11 MUTATED        3      1      5      0      2
  TRIP11 WILD-TYPE     81     84     80     69     45
D526V5, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              3               81
  CLUS_2              1               84
  CLUS_3              5               80
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP11 MUTATED        0      1      4      6
  TRIP11 WILD-TYPE     95     73    117     74
D526V6, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              1               73
  CLUS_3              4              117
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIP11 MUTATED        4      3      2      2      0      2
  TRIP11 WILD-TYPE     48     61     70    102     40     57
D526V7, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              3               61
  CLUS_3              2               70
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP11 MUTATED        9      2      2
  TRIP11 WILD-TYPE    208     73     97
D526V8, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP11 MUTATED        6      1      4
  TRIP11 WILD-TYPE    115    107     68
D526V9, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              1              107
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP11 MUTATED        4      2      3      0      2
  TRIP11 WILD-TYPE     84     64     42     55     45
D526V10, multiclass
        clus
vv       TRIP11 MUTATED TRIP11 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              2               64
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(527) Variable = PNPLA7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA7 MUTATED        6     16      1      0
  PNPLA7 WILD-TYPE    198    121     46      3
D527V1, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              6              198
  CLUS_2             16              121
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNPLA7 MUTATED        0     11      5      2      1
  PNPLA7 WILD-TYPE     39     85     39     86     79
D527V2, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              0               39
  CLUS_2             11               85
  CLUS_3              5               39
  CLUS_4              2               86
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNPLA7 MUTATED        1      7      4      0      5
  PNPLA7 WILD-TYPE     25     72     69     82     53
D527V3, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              7               72
  CLUS_3              4               69
  CLUS_4              0               82
  CLUS_5              5               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA7 MUTATED        3      7      5      2
  PNPLA7 WILD-TYPE    124     44     66     67
D527V4, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              7               44
  CLUS_3              5               66
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNPLA7 MUTATED        1      4     11      4      2
  PNPLA7 WILD-TYPE     83     81     74     65     45
D527V5, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              4               81
  CLUS_3             11               74
  CLUS_4              4               65
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNPLA7 MUTATED        7      3      3      9
  PNPLA7 WILD-TYPE     88     71    118     71
D527V6, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              7               88
  CLUS_2              3               71
  CLUS_3              3              118
  CLUS_4              9               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PNPLA7 MUTATED        5      8      4      3      2      1
  PNPLA7 WILD-TYPE     47     56     68    101     38     58
D527V7, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              8               56
  CLUS_3              4               68
  CLUS_4              3              101
  CLUS_5              2               38
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA7 MUTATED       19      2      2
  PNPLA7 WILD-TYPE    198     73     97
D527V8, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1             19              198
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PNPLA7 MUTATED        8      3      6
  PNPLA7 WILD-TYPE    113    105     66
D527V9, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              8              113
  CLUS_2              3              105
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNPLA7 MUTATED        6      1      3      1      6
  PNPLA7 WILD-TYPE     82     65     42     54     41
D527V10, multiclass
        clus
vv       PNPLA7 MUTATED PNPLA7 WILD-TYPE
  CLUS_1              6               82
  CLUS_2              1               65
  CLUS_3              3               42
  CLUS_4              1               54
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(528) Variable = C7ORF49 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF49 MUTATED        1      6      0      0
  C7ORF49 WILD-TYPE    203    131     47      3
D528V1, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               6               131
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF49 MUTATED        0      6      1      0      0
  C7ORF49 WILD-TYPE     39     90     43     88     80
D528V2, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               6                90
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF49 MUTATED        0      1      3      0      0
  C7ORF49 WILD-TYPE     26     78     70     82     58
D528V3, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                78
  CLUS_3               3                70
  CLUS_4               0                82
  CLUS_5               0                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF49 MUTATED        0      2      1      1
  C7ORF49 WILD-TYPE    127     49     70     68
D528V4, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               2                49
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF49 MUTATED        0      1      5      1      0
  C7ORF49 WILD-TYPE     84     84     80     68     47
D528V5, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               5                80
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C7ORF49 MUTATED        1      1      0      5
  C7ORF49 WILD-TYPE     94     73    121     75
D528V6, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C7ORF49 MUTATED        3      1      1      1      1      0
  C7ORF49 WILD-TYPE     49     63     71    103     39     59
D528V7, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               1                63
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF49 MUTATED        6      0      1
  C7ORF49 WILD-TYPE    211     75     98
D528V8, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C7ORF49 MUTATED        3      1      0
  C7ORF49 WILD-TYPE    118    107     72
D528V9, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               1               107
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C7ORF49 MUTATED        3      0      0      0      1
  C7ORF49 WILD-TYPE     85     66     45     55     46
D528V10, multiclass
        clus
vv       C7ORF49 MUTATED C7ORF49 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(529) Variable = C14ORF50 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF50 MUTATED        1      7      0      0
  C14ORF50 WILD-TYPE    203    130     47      3
D529V1, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                7                130
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF50 MUTATED        1      2      2      0      1
  C14ORF50 WILD-TYPE     38     94     42     88     79
D529V2, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                2                 94
  CLUS_3                2                 42
  CLUS_4                0                 88
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF50 MUTATED        0      3      1      0      4
  C14ORF50 WILD-TYPE     26     76     72     82     54
D529V3, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                3                 76
  CLUS_3                1                 72
  CLUS_4                0                 82
  CLUS_5                4                 54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF50 MUTATED        2      2      2      2
  C14ORF50 WILD-TYPE    125     49     69     67
D529V4, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                2                 49
  CLUS_3                2                 69
  CLUS_4                2                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF50 MUTATED        0      3      2      1      1
  C14ORF50 WILD-TYPE     84     82     83     68     46
D529V5, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                3                 82
  CLUS_3                2                 83
  CLUS_4                1                 68
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C14ORF50 MUTATED        1      3      1      2
  C14ORF50 WILD-TYPE     94     71    120     78
D529V6, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                3                 71
  CLUS_3                1                120
  CLUS_4                2                 78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C14ORF50 MUTATED        2      4      0      1      1      0
  C14ORF50 WILD-TYPE     50     60     72    103     39     59
D529V7, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                4                 60
  CLUS_3                0                 72
  CLUS_4                1                103
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF50 MUTATED        5      1      2
  C14ORF50 WILD-TYPE    212     74     97
D529V8, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                5                212
  CLUS_2                1                 74
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C14ORF50 MUTATED        3      0      3
  C14ORF50 WILD-TYPE    118    108     69
D529V9, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                3                118
  CLUS_2                0                108
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C14ORF50 MUTATED        3      1      1      0      1
  C14ORF50 WILD-TYPE     85     65     44     55     46
D529V10, multiclass
        clus
vv       C14ORF50 MUTATED C14ORF50 WILD-TYPE
  CLUS_1                3                 85
  CLUS_2                1                 65
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(530) Variable = PKN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKN1 MUTATED        1      9      0      0
  PKN1 WILD-TYPE    203    128     47      3
D530V1, multiclass
        clus
vv       PKN1 MUTATED PKN1 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            9            128
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PKN1 MUTATED        0      5      0      0      1
  PKN1 WILD-TYPE     39     91     44     88     79
D530V2, multiclass
        clus
vv       PKN1 MUTATED PKN1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            5             91
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PKN1 MUTATED        1      3      2      1      1
  PKN1 WILD-TYPE     25     76     71     81     57
D530V3, multiclass
        clus
vv       PKN1 MUTATED PKN1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKN1 MUTATED        2      5      0      1
  PKN1 WILD-TYPE    125     46     71     68
D530V4, multiclass
        clus
vv       PKN1 MUTATED PKN1 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            5             46
  CLUS_3            0             71
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PKN1 MUTATED        0      2      4      1      2
  PKN1 WILD-TYPE     84     83     81     68     45
D530V5, multiclass
        clus
vv       PKN1 MUTATED PKN1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            4             81
  CLUS_4            1             68
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKN1 MUTATED        2      1      2      4
  PKN1 WILD-TYPE     93     73    119     76
D530V6, multiclass
        clus
vv       PKN1 MUTATED PKN1 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PKN1 MUTATED        3      4      0      1      1      1
  PKN1 WILD-TYPE     49     60     72    103     39     58
D530V7, multiclass
        clus
vv       PKN1 MUTATED PKN1 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            4             60
  CLUS_3            0             72
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PKN1 MUTATED        8      0      2
  PKN1 WILD-TYPE    209     75     97
D530V8, multiclass
        clus
vv       PKN1 MUTATED PKN1 WILD-TYPE
  CLUS_1            8            209
  CLUS_2            0             75
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PKN1 MUTATED        4      1      2
  PKN1 WILD-TYPE    117    107     70
D530V9, multiclass
        clus
vv       PKN1 MUTATED PKN1 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PKN1 MUTATED        2      0      1      1      3
  PKN1 WILD-TYPE     86     66     44     54     44
D530V10, multiclass
        clus
vv       PKN1 MUTATED PKN1 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(531) Variable = ASAP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASAP2 MUTATED        5     11      0      0
  ASAP2 WILD-TYPE    199    126     47      3
D531V1, multiclass
        clus
vv       ASAP2 MUTATED ASAP2 WILD-TYPE
  CLUS_1             5             199
  CLUS_2            11             126
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASAP2 MUTATED        2      7      3      1      0
  ASAP2 WILD-TYPE     37     89     41     87     80
D531V2, multiclass
        clus
vv       ASAP2 MUTATED ASAP2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             7              89
  CLUS_3             3              41
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASAP2 MUTATED        0      7      4      3      2
  ASAP2 WILD-TYPE     26     72     69     79     56
D531V3, multiclass
        clus
vv       ASAP2 MUTATED ASAP2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             7              72
  CLUS_3             4              69
  CLUS_4             3              79
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASAP2 MUTATED        2      6      5      3
  ASAP2 WILD-TYPE    125     45     66     66
D531V4, multiclass
        clus
vv       ASAP2 MUTATED ASAP2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             6              45
  CLUS_3             5              66
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASAP2 MUTATED        3      3      6      1      0
  ASAP2 WILD-TYPE     81     82     79     68     47
D531V5, multiclass
        clus
vv       ASAP2 MUTATED ASAP2 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             3              82
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASAP2 MUTATED        3      3      4      3
  ASAP2 WILD-TYPE     92     71    117     77
D531V6, multiclass
        clus
vv       ASAP2 MUTATED ASAP2 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             3              71
  CLUS_3             4             117
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASAP2 MUTATED        0      5      4      4      2      1
  ASAP2 WILD-TYPE     52     59     68    100     38     58
D531V7, multiclass
        clus
vv       ASAP2 MUTATED ASAP2 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             5              59
  CLUS_3             4              68
  CLUS_4             4             100
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASAP2 MUTATED       11      4      1
  ASAP2 WILD-TYPE    206     71     98
D531V8, multiclass
        clus
vv       ASAP2 MUTATED ASAP2 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             4              71
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASAP2 MUTATED        4      2      5
  ASAP2 WILD-TYPE    117    106     67
D531V9, multiclass
        clus
vv       ASAP2 MUTATED ASAP2 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             2             106
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASAP2 MUTATED        5      2      2      0      2
  ASAP2 WILD-TYPE     83     64     43     55     45
D531V10, multiclass
        clus
vv       ASAP2 MUTATED ASAP2 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             2              64
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(532) Variable = FAM133A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM133A MUTATED        1      6      2      0
  FAM133A WILD-TYPE    203    131     45      3
D532V1, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               1               203
  CLUS_2               6               131
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM133A MUTATED        0      6      1      0      0
  FAM133A WILD-TYPE     39     90     43     88     80
D532V2, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               0                39
  CLUS_2               6                90
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM133A MUTATED        1      2      2      1      1
  FAM133A WILD-TYPE     25     77     71     81     57
D532V3, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               1                25
  CLUS_2               2                77
  CLUS_3               2                71
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM133A MUTATED        2      3      2      0
  FAM133A WILD-TYPE    125     48     69     69
D532V4, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               2               125
  CLUS_2               3                48
  CLUS_3               2                69
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM133A MUTATED        1      1      7      0      0
  FAM133A WILD-TYPE     83     84     78     69     47
D532V5, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               7                78
  CLUS_4               0                69
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM133A MUTATED        1      1      1      6
  FAM133A WILD-TYPE     94     73    120     74
D532V6, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM133A MUTATED        1      3      4      0      0      1
  FAM133A WILD-TYPE     51     61     68    104     40     58
D532V7, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               1                51
  CLUS_2               3                61
  CLUS_3               4                68
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM133A MUTATED        8      0      1
  FAM133A WILD-TYPE    209     75     98
D532V8, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               8               209
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM133A MUTATED        3      0      2
  FAM133A WILD-TYPE    118    108     70
D532V9, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               3               118
  CLUS_2               0               108
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM133A MUTATED        2      0      1      0      2
  FAM133A WILD-TYPE     86     66     44     55     45
D532V10, multiclass
        clus
vv       FAM133A MUTATED FAM133A WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(533) Variable = METTL6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL6 MUTATED        0      5      0      0
  METTL6 WILD-TYPE    204    132     47      3
D533V1, multiclass
        clus
vv       METTL6 MUTATED METTL6 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  METTL6 MUTATED        1      2      0      0      0
  METTL6 WILD-TYPE     38     94     44     88     80
D533V2, multiclass
        clus
vv       METTL6 MUTATED METTL6 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              2               94
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  METTL6 MUTATED        0      1      2      0      2
  METTL6 WILD-TYPE     26     78     71     82     56
D533V3, multiclass
        clus
vv       METTL6 MUTATED METTL6 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL6 MUTATED        1      3      1      0
  METTL6 WILD-TYPE    126     48     70     69
D533V4, multiclass
        clus
vv       METTL6 MUTATED METTL6 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              3               48
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  METTL6 MUTATED        0      0      3      1      1
  METTL6 WILD-TYPE     84     85     82     68     46
D533V5, multiclass
        clus
vv       METTL6 MUTATED METTL6 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              3               82
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  METTL6 MUTATED        1      1      0      3
  METTL6 WILD-TYPE     94     73    121     77
D533V6, multiclass
        clus
vv       METTL6 MUTATED METTL6 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  METTL6 MUTATED        3      2      0      0      0      0
  METTL6 WILD-TYPE     49     62     72    104     40     59
D533V7, multiclass
        clus
vv       METTL6 MUTATED METTL6 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  METTL6 MUTATED        4      0      1
  METTL6 WILD-TYPE    213     75     98
D533V8, multiclass
        clus
vv       METTL6 MUTATED METTL6 WILD-TYPE
  CLUS_1              4              213
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  METTL6 MUTATED        2      0      1
  METTL6 WILD-TYPE    119    108     71
D533V9, multiclass
        clus
vv       METTL6 MUTATED METTL6 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  METTL6 MUTATED        1      0      0      0      2
  METTL6 WILD-TYPE     87     66     45     55     45
D533V10, multiclass
        clus
vv       METTL6 MUTATED METTL6 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              0               45
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(534) Variable = EFHD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHD1 MUTATED        1      4      1      0
  EFHD1 WILD-TYPE    203    133     46      3
D534V1, multiclass
        clus
vv       EFHD1 MUTATED EFHD1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             4             133
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHD1 MUTATED        0      5      0      0      1
  EFHD1 WILD-TYPE     39     91     44     88     79
D534V2, multiclass
        clus
vv       EFHD1 MUTATED EFHD1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHD1 MUTATED        1      1      3      0      1
  EFHD1 WILD-TYPE     25     78     70     82     57
D534V3, multiclass
        clus
vv       EFHD1 MUTATED EFHD1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHD1 MUTATED        1      4      1      0
  EFHD1 WILD-TYPE    126     47     70     69
D534V4, multiclass
        clus
vv       EFHD1 MUTATED EFHD1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHD1 MUTATED        0      0      5      0      1
  EFHD1 WILD-TYPE     84     85     80     69     46
D534V5, multiclass
        clus
vv       EFHD1 MUTATED EFHD1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHD1 MUTATED        1      0      1      4
  EFHD1 WILD-TYPE     94     74    120     76
D534V6, multiclass
        clus
vv       EFHD1 MUTATED EFHD1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EFHD1 MUTATED        3      2      1      0      0      0
  EFHD1 WILD-TYPE     49     62     71    104     40     59
D534V7, multiclass
        clus
vv       EFHD1 MUTATED EFHD1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHD1 MUTATED        6      0      0
  EFHD1 WILD-TYPE    211     75     99
D534V8, multiclass
        clus
vv       EFHD1 MUTATED EFHD1 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHD1 MUTATED        2      0      2
  EFHD1 WILD-TYPE    119    108     70
D534V9, multiclass
        clus
vv       EFHD1 MUTATED EFHD1 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHD1 MUTATED        0      0      2      0      2
  EFHD1 WILD-TYPE     88     66     43     55     45
D534V10, multiclass
        clus
vv       EFHD1 MUTATED EFHD1 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(535) Variable = VPS13A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13A MUTATED        9     24      5      0
  VPS13A WILD-TYPE    195    113     42      3
D535V1, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1              9              195
  CLUS_2             24              113
  CLUS_3              5               42
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS13A MUTATED        3     15      6      4      3
  VPS13A WILD-TYPE     36     81     38     84     77
D535V2, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1              3               36
  CLUS_2             15               81
  CLUS_3              6               38
  CLUS_4              4               84
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS13A MUTATED        2     15      9      3      7
  VPS13A WILD-TYPE     24     64     64     79     51
D535V3, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1              2               24
  CLUS_2             15               64
  CLUS_3              9               64
  CLUS_4              3               79
  CLUS_5              7               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13A MUTATED        5     19      8      4
  VPS13A WILD-TYPE    122     32     63     65
D535V4, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1              5              122
  CLUS_2             19               32
  CLUS_3              8               63
  CLUS_4              4               65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS13A MUTATED        3      3     19      4      6
  VPS13A WILD-TYPE     81     82     66     65     41
D535V5, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1              3               81
  CLUS_2              3               82
  CLUS_3             19               66
  CLUS_4              4               65
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS13A MUTATED        6      4      8     17
  VPS13A WILD-TYPE     89     70    113     63
D535V6, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1              6               89
  CLUS_2              4               70
  CLUS_3              8              113
  CLUS_4             17               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VPS13A MUTATED        6     13      9      6      3      1
  VPS13A WILD-TYPE     46     51     63     98     37     58
D535V7, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1              6               46
  CLUS_2             13               51
  CLUS_3              9               63
  CLUS_4              6               98
  CLUS_5              3               37
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS13A MUTATED       29      4      5
  VPS13A WILD-TYPE    188     71     94
D535V8, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1             29              188
  CLUS_2              4               71
  CLUS_3              5               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  VPS13A MUTATED       11      3     13
  VPS13A WILD-TYPE    110    105     59
D535V9, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1             11              110
  CLUS_2              3              105
  CLUS_3             13               59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS13A MUTATED        7      2      7      2      9
  VPS13A WILD-TYPE     81     64     38     53     38
D535V10, multiclass
        clus
vv       VPS13A MUTATED VPS13A WILD-TYPE
  CLUS_1              7               81
  CLUS_2              2               64
  CLUS_3              7               38
  CLUS_4              2               53
  CLUS_5              9               38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(536) Variable = ANKRD28 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD28 MUTATED        2     11      0      0
  ANKRD28 WILD-TYPE    202    126     47      3
D536V1, multiclass
        clus
vv       ANKRD28 MUTATED ANKRD28 WILD-TYPE
  CLUS_1               2               202
  CLUS_2              11               126
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD28 MUTATED        0      7      1      0      3
  ANKRD28 WILD-TYPE     39     89     43     88     77
D536V2, multiclass
        clus
vv       ANKRD28 MUTATED ANKRD28 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               7                89
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               3                77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD28 MUTATED        2      2      2      3      2
  ANKRD28 WILD-TYPE     24     77     71     79     56
D536V3, multiclass
        clus
vv       ANKRD28 MUTATED ANKRD28 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               2                77
  CLUS_3               2                71
  CLUS_4               3                79
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD28 MUTATED        3      5      1      2
  ANKRD28 WILD-TYPE    124     46     70     67
D536V4, multiclass
        clus
vv       ANKRD28 MUTATED ANKRD28 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               5                46
  CLUS_3               1                70
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD28 MUTATED        1      4      7      0      1
  ANKRD28 WILD-TYPE     83     81     78     69     46
D536V5, multiclass
        clus
vv       ANKRD28 MUTATED ANKRD28 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               4                81
  CLUS_3               7                78
  CLUS_4               0                69
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD28 MUTATED        3      4      3      3
  ANKRD28 WILD-TYPE     92     70    118     77
D536V6, multiclass
        clus
vv       ANKRD28 MUTATED ANKRD28 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               4                70
  CLUS_3               3               118
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANKRD28 MUTATED        2      3      2      4      1      1
  ANKRD28 WILD-TYPE     50     61     70    100     39     58
D536V7, multiclass
        clus
vv       ANKRD28 MUTATED ANKRD28 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               3                61
  CLUS_3               2                70
  CLUS_4               4               100
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD28 MUTATED        6      5      2
  ANKRD28 WILD-TYPE    211     70     97
D536V8, multiclass
        clus
vv       ANKRD28 MUTATED ANKRD28 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               5                70
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD28 MUTATED        3      4      3
  ANKRD28 WILD-TYPE    118    104     69
D536V9, multiclass
        clus
vv       ANKRD28 MUTATED ANKRD28 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               4               104
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD28 MUTATED        1      3      3      0      3
  ANKRD28 WILD-TYPE     87     63     42     55     44
D536V10, multiclass
        clus
vv       ANKRD28 MUTATED ANKRD28 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               3                63
  CLUS_3               3                42
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(537) Variable = OR5M3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5M3 MUTATED        7     11      1      0
  OR5M3 WILD-TYPE    197    126     46      3
D537V1, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             7             197
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR5M3 MUTATED        1      9      1      4      2
  OR5M3 WILD-TYPE     38     87     43     84     78
D537V2, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             9              87
  CLUS_3             1              43
  CLUS_4             4              84
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR5M3 MUTATED        0      6      4      2      1
  OR5M3 WILD-TYPE     26     73     69     80     57
D537V3, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             6              73
  CLUS_3             4              69
  CLUS_4             2              80
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5M3 MUTATED        3      4      5      1
  OR5M3 WILD-TYPE    124     47     66     68
D537V4, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             4              47
  CLUS_3             5              66
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR5M3 MUTATED        5      2      7      4      1
  OR5M3 WILD-TYPE     79     83     78     65     46
D537V5, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             5              79
  CLUS_2             2              83
  CLUS_3             7              78
  CLUS_4             4              65
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR5M3 MUTATED        6      1      4      8
  OR5M3 WILD-TYPE     89     73    117     72
D537V6, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             1              73
  CLUS_3             4             117
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR5M3 MUTATED        6      3      2      2      1      5
  OR5M3 WILD-TYPE     46     61     70    102     39     54
D537V7, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             3              61
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             5              54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5M3 MUTATED       13      1      5
  OR5M3 WILD-TYPE    204     74     94
D537V8, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1            13             204
  CLUS_2             1              74
  CLUS_3             5              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR5M3 MUTATED        9      3      3
  OR5M3 WILD-TYPE    112    105     69
D537V9, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             9             112
  CLUS_2             3             105
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR5M3 MUTATED        4      0      2      4      5
  OR5M3 WILD-TYPE     84     66     43     51     42
D537V10, multiclass
        clus
vv       OR5M3 MUTATED OR5M3 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             4              51
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(538) Variable = EXPH5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXPH5 MUTATED        2     11      2      0
  EXPH5 WILD-TYPE    202    126     45      3
D538V1, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            11             126
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXPH5 MUTATED        0      9      1      1      1
  EXPH5 WILD-TYPE     39     87     43     87     79
D538V2, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             9              87
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXPH5 MUTATED        1      4      6      0      3
  EXPH5 WILD-TYPE     25     75     67     82     55
D538V3, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             6              67
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXPH5 MUTATED        3     10      1      0
  EXPH5 WILD-TYPE    124     41     70     69
D538V4, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             3             124
  CLUS_2            10              41
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXPH5 MUTATED        1      1      7      1      4
  EXPH5 WILD-TYPE     83     84     78     68     43
D538V5, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             7              78
  CLUS_4             1              68
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXPH5 MUTATED        4      1      3      6
  EXPH5 WILD-TYPE     91     73    118     74
D538V6, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             3             118
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EXPH5 MUTATED        5      7      2      0      0      1
  EXPH5 WILD-TYPE     47     57     70    104     40     58
D538V7, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             7              57
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EXPH5 MUTATED       13      0      2
  EXPH5 WILD-TYPE    204     75     97
D538V8, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1            13             204
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EXPH5 MUTATED        5      0      5
  EXPH5 WILD-TYPE    116    108     67
D538V9, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             0             108
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXPH5 MUTATED        0      0      3      1      6
  EXPH5 WILD-TYPE     88     66     42     54     41
D538V10, multiclass
        clus
vv       EXPH5 MUTATED EXPH5 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(539) Variable = ABCB4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB4 MUTATED        4     16      5      0
  ABCB4 WILD-TYPE    200    121     42      3
D539V1, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            16             121
  CLUS_3             5              42
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCB4 MUTATED        3     11      4      2      1
  ABCB4 WILD-TYPE     36     85     40     86     79
D539V2, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             3              36
  CLUS_2            11              85
  CLUS_3             4              40
  CLUS_4             2              86
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCB4 MUTATED        1      9      6      3      6
  ABCB4 WILD-TYPE     25     70     67     79     52
D539V3, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             9              70
  CLUS_3             6              67
  CLUS_4             3              79
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB4 MUTATED        6     11      5      3
  ABCB4 WILD-TYPE    121     40     66     66
D539V4, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             6             121
  CLUS_2            11              40
  CLUS_3             5              66
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCB4 MUTATED        1      4     10      3      5
  ABCB4 WILD-TYPE     83     81     75     66     42
D539V5, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             4              81
  CLUS_3            10              75
  CLUS_4             3              66
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCB4 MUTATED        5      4      3     11
  ABCB4 WILD-TYPE     90     70    118     69
D539V6, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             4              70
  CLUS_3             3             118
  CLUS_4            11              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCB4 MUTATED        6      8      5      4      2      1
  ABCB4 WILD-TYPE     46     56     67    100     38     58
D539V7, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             8              56
  CLUS_3             5              67
  CLUS_4             4             100
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB4 MUTATED       21      3      2
  ABCB4 WILD-TYPE    196     72     97
D539V8, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1            21             196
  CLUS_2             3              72
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCB4 MUTATED        8      4      8
  ABCB4 WILD-TYPE    113    104     64
D539V9, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             8             113
  CLUS_2             4             104
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCB4 MUTATED        7      3      2      1      7
  ABCB4 WILD-TYPE     81     63     43     54     40
D539V10, multiclass
        clus
vv       ABCB4 MUTATED ABCB4 WILD-TYPE
  CLUS_1             7              81
  CLUS_2             3              63
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(540) Variable = HRNR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRNR MUTATED       18     15      6      1
  HRNR WILD-TYPE    186    122     41      2
D540V1, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1           18            186
  CLUS_2           15            122
  CLUS_3            6             41
  CLUS_4            1              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HRNR MUTATED        8     14      4      9      2
  HRNR WILD-TYPE     31     82     40     79     78
D540V2, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1            8             31
  CLUS_2           14             82
  CLUS_3            4             40
  CLUS_4            9             79
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HRNR MUTATED        1      7      9      6     10
  HRNR WILD-TYPE     25     72     64     76     48
D540V3, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1            1             25
  CLUS_2            7             72
  CLUS_3            9             64
  CLUS_4            6             76
  CLUS_5           10             48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRNR MUTATED       12      9      6      6
  HRNR WILD-TYPE    115     42     65     63
D540V4, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1           12            115
  CLUS_2            9             42
  CLUS_3            6             65
  CLUS_4            6             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HRNR MUTATED        6      4     15      9      8
  HRNR WILD-TYPE     78     81     70     60     39
D540V5, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1            6             78
  CLUS_2            4             81
  CLUS_3           15             70
  CLUS_4            9             60
  CLUS_5            8             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRNR MUTATED       13      5     10     14
  HRNR WILD-TYPE     82     69    111     66
D540V6, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1           13             82
  CLUS_2            5             69
  CLUS_3           10            111
  CLUS_4           14             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HRNR MUTATED        9      9      5      7      4      8
  HRNR WILD-TYPE     43     55     67     97     36     51
D540V7, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1            9             43
  CLUS_2            9             55
  CLUS_3            5             67
  CLUS_4            7             97
  CLUS_5            4             36
  CLUS_6            8             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRNR MUTATED       29      5      8
  HRNR WILD-TYPE    188     70     91
D540V8, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1           29            188
  CLUS_2            5             70
  CLUS_3            8             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRNR MUTATED       20      9      7
  HRNR WILD-TYPE    101     99     65
D540V9, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1           20            101
  CLUS_2            9             99
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HRNR MUTATED       14      2      4      6     10
  HRNR WILD-TYPE     74     64     41     49     37
D540V10, multiclass
        clus
vv       HRNR MUTATED HRNR WILD-TYPE
  CLUS_1           14             74
  CLUS_2            2             64
  CLUS_3            4             41
  CLUS_4            6             49
  CLUS_5           10             37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(541) Variable = BAHCC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAHCC1 MUTATED        3      9      0      0
  BAHCC1 WILD-TYPE    201    128     47      3
D541V1, multiclass
        clus
vv       BAHCC1 MUTATED BAHCC1 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              9              128
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAHCC1 MUTATED        0      4      4      1      1
  BAHCC1 WILD-TYPE     39     92     40     87     79
D541V2, multiclass
        clus
vv       BAHCC1 MUTATED BAHCC1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              4               40
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAHCC1 MUTATED        2      3      1      0      2
  BAHCC1 WILD-TYPE     24     76     72     82     56
D541V3, multiclass
        clus
vv       BAHCC1 MUTATED BAHCC1 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              3               76
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAHCC1 MUTATED        4      2      2      0
  BAHCC1 WILD-TYPE    123     49     69     69
D541V4, multiclass
        clus
vv       BAHCC1 MUTATED BAHCC1 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              2               49
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAHCC1 MUTATED        1      2      5      2      2
  BAHCC1 WILD-TYPE     83     83     80     67     45
D541V5, multiclass
        clus
vv       BAHCC1 MUTATED BAHCC1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              5               80
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAHCC1 MUTATED        5      0      1      6
  BAHCC1 WILD-TYPE     90     74    120     74
D541V6, multiclass
        clus
vv       BAHCC1 MUTATED BAHCC1 WILD-TYPE
  CLUS_1              5               90
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BAHCC1 MUTATED        2      5      3      1      0      1
  BAHCC1 WILD-TYPE     50     59     69    103     40     58
D541V7, multiclass
        clus
vv       BAHCC1 MUTATED BAHCC1 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              5               59
  CLUS_3              3               69
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BAHCC1 MUTATED       11      0      1
  BAHCC1 WILD-TYPE    206     75     98
D541V8, multiclass
        clus
vv       BAHCC1 MUTATED BAHCC1 WILD-TYPE
  CLUS_1             11              206
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BAHCC1 MUTATED        5      1      4
  BAHCC1 WILD-TYPE    116    107     68
D541V9, multiclass
        clus
vv       BAHCC1 MUTATED BAHCC1 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              1              107
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAHCC1 MUTATED        3      0      3      0      4
  BAHCC1 WILD-TYPE     85     66     42     55     43
D541V10, multiclass
        clus
vv       BAHCC1 MUTATED BAHCC1 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(542) Variable = C1RL MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1RL MUTATED        1      3      2      0
  C1RL WILD-TYPE    203    134     45      3
D542V1, multiclass
        clus
vv       C1RL MUTATED C1RL WILD-TYPE
  CLUS_1            1            203
  CLUS_2            3            134
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1RL MUTATED        0      3      0      1      0
  C1RL WILD-TYPE     39     93     44     87     80
D542V2, multiclass
        clus
vv       C1RL MUTATED C1RL WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            0             44
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1RL MUTATED        0      0      1      0      4
  C1RL WILD-TYPE     26     79     72     82     54
D542V3, multiclass
        clus
vv       C1RL MUTATED C1RL WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             79
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1RL MUTATED        1      4      0      0
  C1RL WILD-TYPE    126     47     71     69
D542V4, multiclass
        clus
vv       C1RL MUTATED C1RL WILD-TYPE
  CLUS_1            1            126
  CLUS_2            4             47
  CLUS_3            0             71
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1RL MUTATED        1      1      3      0      1
  C1RL WILD-TYPE     83     84     82     69     46
D542V5, multiclass
        clus
vv       C1RL MUTATED C1RL WILD-TYPE
  CLUS_1            1             83
  CLUS_2            1             84
  CLUS_3            3             82
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1RL MUTATED        0      0      1      5
  C1RL WILD-TYPE     95     74    120     75
D542V6, multiclass
        clus
vv       C1RL MUTATED C1RL WILD-TYPE
  CLUS_1            0             95
  CLUS_2            0             74
  CLUS_3            1            120
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1RL MUTATED        1      3      1      0      0      1
  C1RL WILD-TYPE     51     61     71    104     40     58
D542V7, multiclass
        clus
vv       C1RL MUTATED C1RL WILD-TYPE
  CLUS_1            1             51
  CLUS_2            3             61
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  C1RL MUTATED        5      0      1
  C1RL WILD-TYPE    212     75     98
D542V8, multiclass
        clus
vv       C1RL MUTATED C1RL WILD-TYPE
  CLUS_1            5            212
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  C1RL MUTATED        2      0      2
  C1RL WILD-TYPE    119    108     70
D542V9, multiclass
        clus
vv       C1RL MUTATED C1RL WILD-TYPE
  CLUS_1            2            119
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1RL MUTATED        0      0      1      1      2
  C1RL WILD-TYPE     88     66     44     54     45
D542V10, multiclass
        clus
vv       C1RL MUTATED C1RL WILD-TYPE
  CLUS_1            0             88
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(543) Variable = USP21 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP21 MUTATED        3      8      1      0
  USP21 WILD-TYPE    201    129     46      3
D543V1, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP21 MUTATED        2      4      2      1      0
  USP21 WILD-TYPE     37     92     42     87     80
D543V2, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             4              92
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP21 MUTATED        0      6      2      1      1
  USP21 WILD-TYPE     26     73     71     81     57
D543V3, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             6              73
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP21 MUTATED        2      4      3      1
  USP21 WILD-TYPE    125     47     68     68
D543V4, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP21 MUTATED        2      1      7      0      2
  USP21 WILD-TYPE     82     84     78     69     45
D543V5, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             1              84
  CLUS_3             7              78
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP21 MUTATED        3      2      1      6
  USP21 WILD-TYPE     92     72    120     74
D543V6, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP21 MUTATED        4      6      0      2      0      1
  USP21 WILD-TYPE     48     58     72    102     40     58
D543V7, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             6              58
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP21 MUTATED       10      1      2
  USP21 WILD-TYPE    207     74     97
D543V8, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP21 MUTATED        5      0      4
  USP21 WILD-TYPE    116    108     68
D543V9, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP21 MUTATED        1      0      3      0      5
  USP21 WILD-TYPE     87     66     42     55     42
D543V10, multiclass
        clus
vv       USP21 MUTATED USP21 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(544) Variable = ZBTB38 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB38 MUTATED        3     15      2      0
  ZBTB38 WILD-TYPE    201    122     45      3
D544V1, multiclass
        clus
vv       ZBTB38 MUTATED ZBTB38 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             15              122
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB38 MUTATED        1      9      4      2      2
  ZBTB38 WILD-TYPE     38     87     40     86     78
D544V2, multiclass
        clus
vv       ZBTB38 MUTATED ZBTB38 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              9               87
  CLUS_3              4               40
  CLUS_4              2               86
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB38 MUTATED        4      4      2      2      3
  ZBTB38 WILD-TYPE     22     75     71     80     55
D544V3, multiclass
        clus
vv       ZBTB38 MUTATED ZBTB38 WILD-TYPE
  CLUS_1              4               22
  CLUS_2              4               75
  CLUS_3              2               71
  CLUS_4              2               80
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB38 MUTATED        6      4      2      3
  ZBTB38 WILD-TYPE    121     47     69     66
D544V4, multiclass
        clus
vv       ZBTB38 MUTATED ZBTB38 WILD-TYPE
  CLUS_1              6              121
  CLUS_2              4               47
  CLUS_3              2               69
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB38 MUTATED        2      4      7      3      3
  ZBTB38 WILD-TYPE     82     81     78     66     44
D544V5, multiclass
        clus
vv       ZBTB38 MUTATED ZBTB38 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              4               81
  CLUS_3              7               78
  CLUS_4              3               66
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB38 MUTATED        8      4      2      5
  ZBTB38 WILD-TYPE     87     70    119     75
D544V6, multiclass
        clus
vv       ZBTB38 MUTATED ZBTB38 WILD-TYPE
  CLUS_1              8               87
  CLUS_2              4               70
  CLUS_3              2              119
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZBTB38 MUTATED        4      7      4      2      1      2
  ZBTB38 WILD-TYPE     48     57     68    102     39     57
D544V7, multiclass
        clus
vv       ZBTB38 MUTATED ZBTB38 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              7               57
  CLUS_3              4               68
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB38 MUTATED       15      2      3
  ZBTB38 WILD-TYPE    202     73     96
D544V8, multiclass
        clus
vv       ZBTB38 MUTATED ZBTB38 WILD-TYPE
  CLUS_1             15              202
  CLUS_2              2               73
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB38 MUTATED        8      1      7
  ZBTB38 WILD-TYPE    113    107     65
D544V9, multiclass
        clus
vv       ZBTB38 MUTATED ZBTB38 WILD-TYPE
  CLUS_1              8              113
  CLUS_2              1              107
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB38 MUTATED        3      1      5      0      7
  ZBTB38 WILD-TYPE     85     65     40     55     40
D544V10, multiclass
        clus
vv       ZBTB38 MUTATED ZBTB38 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              5               40
  CLUS_4              0               55
  CLUS_5              7               40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(545) Variable = CBLN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLN3 MUTATED        1      6      0      0
  CBLN3 WILD-TYPE    203    131     47      3
D545V1, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             6             131
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLN3 MUTATED        1      4      0      0      0
  CBLN3 WILD-TYPE     38     92     44     88     80
D545V2, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLN3 MUTATED        2      1      2      0      1
  CBLN3 WILD-TYPE     24     78     71     82     57
D545V3, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLN3 MUTATED        3      3      0      0
  CBLN3 WILD-TYPE    124     48     71     69
D545V4, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             3              48
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLN3 MUTATED        1      0      2      2      2
  CBLN3 WILD-TYPE     83     85     83     67     45
D545V5, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             2              83
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CBLN3 MUTATED        3      0      0      4
  CBLN3 WILD-TYPE     92     74    121     76
D545V6, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CBLN3 MUTATED        3      2      1      0      0      1
  CBLN3 WILD-TYPE     49     62     71    104     40     58
D545V7, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLN3 MUTATED        6      0      1
  CBLN3 WILD-TYPE    211     75     98
D545V8, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CBLN3 MUTATED        4      0      1
  CBLN3 WILD-TYPE    117    108     71
D545V9, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             0             108
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CBLN3 MUTATED        1      0      1      0      3
  CBLN3 WILD-TYPE     87     66     44     55     44
D545V10, multiclass
        clus
vv       CBLN3 MUTATED CBLN3 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(546) Variable = AXIN2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AXIN2 MUTATED        5     13      2      0
  AXIN2 WILD-TYPE    199    124     45      3
D546V1, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             5             199
  CLUS_2            13             124
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AXIN2 MUTATED        0     10      2      2      3
  AXIN2 WILD-TYPE     39     86     42     86     77
D546V2, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2            10              86
  CLUS_3             2              42
  CLUS_4             2              86
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AXIN2 MUTATED        1      4      3      4      3
  AXIN2 WILD-TYPE     25     75     70     78     55
D546V3, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             3              70
  CLUS_4             4              78
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AXIN2 MUTATED        4      5      2      4
  AXIN2 WILD-TYPE    123     46     69     65
D546V4, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             4              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AXIN2 MUTATED        2      5      9      0      3
  AXIN2 WILD-TYPE     82     80     76     69     44
D546V5, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             5              80
  CLUS_3             9              76
  CLUS_4             0              69
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AXIN2 MUTATED        5      4      3      7
  AXIN2 WILD-TYPE     90     70    118     73
D546V6, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             4              70
  CLUS_3             3             118
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AXIN2 MUTATED        4      5      2      3      3      3
  AXIN2 WILD-TYPE     48     59     70    101     37     56
D546V7, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             5              59
  CLUS_3             2              70
  CLUS_4             3             101
  CLUS_5             3              37
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AXIN2 MUTATED       11      4      5
  AXIN2 WILD-TYPE    206     71     94
D546V8, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             4              71
  CLUS_3             5              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AXIN2 MUTATED        7      6      4
  AXIN2 WILD-TYPE    114    102     68
D546V9, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             6             102
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AXIN2 MUTATED        6      2      2      2      5
  AXIN2 WILD-TYPE     82     64     43     53     42
D546V10, multiclass
        clus
vv       AXIN2 MUTATED AXIN2 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             2              64
  CLUS_3             2              43
  CLUS_4             2              53
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(547) Variable = CFI MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CFI MUTATED        4      7      2      0
  CFI WILD-TYPE    200    130     45      3
D547V1, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           4           200
  CLUS_2           7           130
  CLUS_3           2            45
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CFI MUTATED        1      5      1      1      1
  CFI WILD-TYPE     38     91     43     87     79
D547V2, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           1            38
  CLUS_2           5            91
  CLUS_3           1            43
  CLUS_4           1            87
  CLUS_5           1            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CFI MUTATED        0      4      3      2      3
  CFI WILD-TYPE     26     75     70     80     55
D547V3, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           0            26
  CLUS_2           4            75
  CLUS_3           3            70
  CLUS_4           2            80
  CLUS_5           3            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CFI MUTATED        4      5      2      1
  CFI WILD-TYPE    123     46     69     68
D547V4, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           4           123
  CLUS_2           5            46
  CLUS_3           2            69
  CLUS_4           1            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CFI MUTATED        1      1      9      1      1
  CFI WILD-TYPE     83     84     76     68     46
D547V5, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           1            83
  CLUS_2           1            84
  CLUS_3           9            76
  CLUS_4           1            68
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CFI MUTATED        5      1      1      6
  CFI WILD-TYPE     90     73    120     74
D547V6, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           5            90
  CLUS_2           1            73
  CLUS_3           1           120
  CLUS_4           6            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CFI MUTATED        4      5      1      3      0      0
  CFI WILD-TYPE     48     59     71    101     40     59
D547V7, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           4            48
  CLUS_2           5            59
  CLUS_3           1            71
  CLUS_4           3           101
  CLUS_5           0            40
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CFI MUTATED       11      1      1
  CFI WILD-TYPE    206     74     98
D547V8, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1          11           206
  CLUS_2           1            74
  CLUS_3           1            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CFI MUTATED        3      2      2
  CFI WILD-TYPE    118    106     70
D547V9, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           3           118
  CLUS_2           2           106
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CFI MUTATED        1      1      2      1      2
  CFI WILD-TYPE     87     65     43     54     45
D547V10, multiclass
        clus
vv       CFI MUTATED CFI WILD-TYPE
  CLUS_1           1            87
  CLUS_2           1            65
  CLUS_3           2            43
  CLUS_4           1            54
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(548) Variable = UNC50 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UNC50 MUTATED        0      3      0      0
  UNC50 WILD-TYPE    204    134     47      3
D548V1, multiclass
        clus
vv       UNC50 MUTATED UNC50 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             3             134
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC50 MUTATED        0      3      0      0      0
  UNC50 WILD-TYPE     39     93     44     88     80
D548V2, multiclass
        clus
vv       UNC50 MUTATED UNC50 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC50 MUTATED        0      2      1      0      0
  UNC50 WILD-TYPE     26     77     72     82     58
D548V3, multiclass
        clus
vv       UNC50 MUTATED UNC50 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UNC50 MUTATED        1      1      1      0
  UNC50 WILD-TYPE    126     50     70     69
D548V4, multiclass
        clus
vv       UNC50 MUTATED UNC50 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             1              50
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC50 MUTATED        0      0      2      0      2
  UNC50 WILD-TYPE     84     85     83     69     45
D548V5, multiclass
        clus
vv       UNC50 MUTATED UNC50 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             2              83
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UNC50 MUTATED        1      0      0      3
  UNC50 WILD-TYPE     94     74    121     77
D548V6, multiclass
        clus
vv       UNC50 MUTATED UNC50 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UNC50 MUTATED        2      1      1      0      0      0
  UNC50 WILD-TYPE     50     63     71    104     40     59
D548V7, multiclass
        clus
vv       UNC50 MUTATED UNC50 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             1              63
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UNC50 MUTATED        4      0      0
  UNC50 WILD-TYPE    213     75     99
D548V8, multiclass
        clus
vv       UNC50 MUTATED UNC50 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UNC50 MUTATED        2      0      1
  UNC50 WILD-TYPE    119    108     71
D548V9, multiclass
        clus
vv       UNC50 MUTATED UNC50 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UNC50 MUTATED        1      0      0      0      2
  UNC50 WILD-TYPE     87     66     45     55     45
D548V10, multiclass
        clus
vv       UNC50 MUTATED UNC50 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(549) Variable = TH1L MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TH1L MUTATED        1      9      1      0
  TH1L WILD-TYPE    203    128     46      3
D549V1, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            1            203
  CLUS_2            9            128
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TH1L MUTATED        1      2      2      1      3
  TH1L WILD-TYPE     38     94     42     87     77
D549V2, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            1             38
  CLUS_2            2             94
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TH1L MUTATED        1      3      1      1      2
  TH1L WILD-TYPE     25     76     72     81     56
D549V3, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            1             72
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TH1L MUTATED        2      3      3      0
  TH1L WILD-TYPE    125     48     68     69
D549V4, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            2            125
  CLUS_2            3             48
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TH1L MUTATED        0      1      7      2      0
  TH1L WILD-TYPE     84     84     78     67     47
D549V5, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            7             78
  CLUS_4            2             67
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TH1L MUTATED        2      1      4      3
  TH1L WILD-TYPE     93     73    117     77
D549V6, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            2             93
  CLUS_2            1             73
  CLUS_3            4            117
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TH1L MUTATED        2      4      4      0      1      0
  TH1L WILD-TYPE     50     60     68    104     39     59
D549V7, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            2             50
  CLUS_2            4             60
  CLUS_3            4             68
  CLUS_4            0            104
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TH1L MUTATED        9      1      1
  TH1L WILD-TYPE    208     74     98
D549V8, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            9            208
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TH1L MUTATED        3      0      3
  TH1L WILD-TYPE    118    108     69
D549V9, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TH1L MUTATED        2      0      2      0      2
  TH1L WILD-TYPE     86     66     43     55     45
D549V10, multiclass
        clus
vv       TH1L MUTATED TH1L WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(550) Variable = HEXDC MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEXDC MUTATED        1      6      1      0
  HEXDC WILD-TYPE    203    131     46      3
D550V1, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             1             203
  CLUS_2             6             131
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HEXDC MUTATED        1      5      1      0      0
  HEXDC WILD-TYPE     38     91     43     88     80
D550V2, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HEXDC MUTATED        1      0      5      0      2
  HEXDC WILD-TYPE     25     79     68     82     56
D550V3, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              79
  CLUS_3             5              68
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEXDC MUTATED        5      3      0      0
  HEXDC WILD-TYPE    122     48     71     69
D550V4, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             5             122
  CLUS_2             3              48
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HEXDC MUTATED        0      1      3      3      1
  HEXDC WILD-TYPE     84     84     82     66     46
D550V5, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             3              82
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEXDC MUTATED        4      1      0      3
  HEXDC WILD-TYPE     91     73    121     77
D550V6, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HEXDC MUTATED        2      2      0      3      1      0
  HEXDC WILD-TYPE     50     62     72    101     39     59
D550V7, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             0              72
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HEXDC MUTATED        7      1      0
  HEXDC WILD-TYPE    210     74     99
D550V8, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             7             210
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HEXDC MUTATED        4      1      1
  HEXDC WILD-TYPE    117    107     71
D550V9, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HEXDC MUTATED        3      1      1      0      1
  HEXDC WILD-TYPE     85     65     44     55     46
D550V10, multiclass
        clus
vv       HEXDC MUTATED HEXDC WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(551) Variable = SOS2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOS2 MUTATED        3     14      1      0
  SOS2 WILD-TYPE    201    123     46      3
D551V1, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            3            201
  CLUS_2           14            123
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOS2 MUTATED        1      8      2      2      2
  SOS2 WILD-TYPE     38     88     42     86     78
D551V2, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            8             88
  CLUS_3            2             42
  CLUS_4            2             86
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOS2 MUTATED        2      4      4      3      2
  SOS2 WILD-TYPE     24     75     69     79     56
D551V3, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            4             75
  CLUS_3            4             69
  CLUS_4            3             79
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOS2 MUTATED        4      5      4      2
  SOS2 WILD-TYPE    123     46     67     67
D551V4, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            4            123
  CLUS_2            5             46
  CLUS_3            4             67
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOS2 MUTATED        1      4      9      1      3
  SOS2 WILD-TYPE     83     81     76     68     44
D551V5, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            4             81
  CLUS_3            9             76
  CLUS_4            1             68
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOS2 MUTATED        6      2      1      9
  SOS2 WILD-TYPE     89     72    120     71
D551V6, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            6             89
  CLUS_2            2             72
  CLUS_3            1            120
  CLUS_4            9             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SOS2 MUTATED        2      5      5      4      0      2
  SOS2 WILD-TYPE     50     59     67    100     40     57
D551V7, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            5             59
  CLUS_3            5             67
  CLUS_4            4            100
  CLUS_5            0             40
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOS2 MUTATED       14      2      2
  SOS2 WILD-TYPE    203     73     97
D551V8, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1           14            203
  CLUS_2            2             73
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SOS2 MUTATED        6      2      3
  SOS2 WILD-TYPE    115    106     69
D551V9, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            6            115
  CLUS_2            2            106
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOS2 MUTATED        4      1      2      0      4
  SOS2 WILD-TYPE     84     65     43     55     43
D551V10, multiclass
        clus
vv       SOS2 MUTATED SOS2 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            1             65
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(552) Variable = SPOCD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOCD1 MUTATED        1     11      1      0
  SPOCD1 WILD-TYPE    203    126     46      3
D552V1, multiclass
        clus
vv       SPOCD1 MUTATED SPOCD1 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             11              126
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPOCD1 MUTATED        1      5      1      0      3
  SPOCD1 WILD-TYPE     38     91     43     88     77
D552V2, multiclass
        clus
vv       SPOCD1 MUTATED SPOCD1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPOCD1 MUTATED        2      4      3      0      1
  SPOCD1 WILD-TYPE     24     75     70     82     57
D552V3, multiclass
        clus
vv       SPOCD1 MUTATED SPOCD1 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              4               75
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOCD1 MUTATED        4      4      2      0
  SPOCD1 WILD-TYPE    123     47     69     69
D552V4, multiclass
        clus
vv       SPOCD1 MUTATED SPOCD1 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              4               47
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPOCD1 MUTATED        0      4      3      2      2
  SPOCD1 WILD-TYPE     84     81     82     67     45
D552V5, multiclass
        clus
vv       SPOCD1 MUTATED SPOCD1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              4               81
  CLUS_3              3               82
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOCD1 MUTATED        3      3      1      4
  SPOCD1 WILD-TYPE     92     71    120     76
D552V6, multiclass
        clus
vv       SPOCD1 MUTATED SPOCD1 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              3               71
  CLUS_3              1              120
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPOCD1 MUTATED        2      4      2      2      3      0
  SPOCD1 WILD-TYPE     50     60     70    102     37     59
D552V7, multiclass
        clus
vv       SPOCD1 MUTATED SPOCD1 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              4               60
  CLUS_3              2               70
  CLUS_4              2              102
  CLUS_5              3               37
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPOCD1 MUTATED       10      2      1
  SPOCD1 WILD-TYPE    207     73     98
D552V8, multiclass
        clus
vv       SPOCD1 MUTATED SPOCD1 WILD-TYPE
  CLUS_1             10              207
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPOCD1 MUTATED        4      3      2
  SPOCD1 WILD-TYPE    117    105     70
D552V9, multiclass
        clus
vv       SPOCD1 MUTATED SPOCD1 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              3              105
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPOCD1 MUTATED        2      3      1      0      3
  SPOCD1 WILD-TYPE     86     63     44     55     44
D552V10, multiclass
        clus
vv       SPOCD1 MUTATED SPOCD1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              3               63
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(553) Variable = STX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX2 MUTATED        0      6      0      0
  STX2 WILD-TYPE    204    131     47      3
D553V1, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            6            131
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STX2 MUTATED        1      5      0      0      0
  STX2 WILD-TYPE     38     91     44     88     80
D553V2, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            5             91
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STX2 MUTATED        0      0      2      1      2
  STX2 WILD-TYPE     26     79     71     81     56
D553V3, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             79
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX2 MUTATED        0      4      0      1
  STX2 WILD-TYPE    127     47     71     68
D553V4, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            4             47
  CLUS_3            0             71
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STX2 MUTATED        0      1      4      1      0
  STX2 WILD-TYPE     84     84     81     68     47
D553V5, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            4             81
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STX2 MUTATED        1      2      0      3
  STX2 WILD-TYPE     94     72    121     77
D553V6, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STX2 MUTATED        3      0      1      1      1      0
  STX2 WILD-TYPE     49     64     71    103     39     59
D553V7, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            0             64
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STX2 MUTATED        4      2      0
  STX2 WILD-TYPE    213     73     99
D553V8, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            4            213
  CLUS_2            2             73
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  STX2 MUTATED        4      1      1
  STX2 WILD-TYPE    117    107     71
D553V9, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            1            107
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STX2 MUTATED        2      1      0      0      3
  STX2 WILD-TYPE     86     65     45     55     44
D553V10, multiclass
        clus
vv       STX2 MUTATED STX2 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(554) Variable = SMAD7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD7 MUTATED        1      5      1      0
  SMAD7 WILD-TYPE    203    132     46      3
D554V1, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             5             132
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD7 MUTATED        0      3      1      1      0
  SMAD7 WILD-TYPE     39     93     43     87     80
D554V2, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD7 MUTATED        0      3      1      1      1
  SMAD7 WILD-TYPE     26     76     72     81     57
D554V3, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD7 MUTATED        0      2      3      1
  SMAD7 WILD-TYPE    127     49     68     68
D554V4, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             2              49
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD7 MUTATED        1      3      1      1      1
  SMAD7 WILD-TYPE     83     82     84     68     46
D554V5, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             1              84
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD7 MUTATED        1      2      1      3
  SMAD7 WILD-TYPE     94     72    120     77
D554V6, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMAD7 MUTATED        1      2      2      1      0      1
  SMAD7 WILD-TYPE     51     62     70    103     40     58
D554V7, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             2              62
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD7 MUTATED        6      0      1
  SMAD7 WILD-TYPE    211     75     98
D554V8, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD7 MUTATED        3      1      1
  SMAD7 WILD-TYPE    118    107     71
D554V9, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD7 MUTATED        2      0      0      0      3
  SMAD7 WILD-TYPE     86     66     45     55     44
D554V10, multiclass
        clus
vv       SMAD7 MUTATED SMAD7 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(555) Variable = GNPNAT1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNPNAT1 MUTATED        2      3      1      0
  GNPNAT1 WILD-TYPE    202    134     46      3
D555V1, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               3               134
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNPNAT1 MUTATED        0      1      1      2      1
  GNPNAT1 WILD-TYPE     39     95     43     86     79
D555V2, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               1                95
  CLUS_3               1                43
  CLUS_4               2                86
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNPNAT1 MUTATED        1      1      1      1      1
  GNPNAT1 WILD-TYPE     25     78     72     81     57
D555V3, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                78
  CLUS_3               1                72
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNPNAT1 MUTATED        1      1      1      2
  GNPNAT1 WILD-TYPE    126     50     70     67
D555V4, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               1                50
  CLUS_3               1                70
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNPNAT1 MUTATED        0      1      2      1      1
  GNPNAT1 WILD-TYPE     84     84     83     68     46
D555V5, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               2                83
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNPNAT1 MUTATED        1      0      2      2
  GNPNAT1 WILD-TYPE     94     74    119     78
D555V6, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               0                74
  CLUS_3               2               119
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GNPNAT1 MUTATED        1      2      0      2      1      0
  GNPNAT1 WILD-TYPE     51     62     72    102     39     59
D555V7, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               2                62
  CLUS_3               0                72
  CLUS_4               2               102
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GNPNAT1 MUTATED        5      1      0
  GNPNAT1 WILD-TYPE    212     74     99
D555V8, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               5               212
  CLUS_2               1                74
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GNPNAT1 MUTATED        2      1      2
  GNPNAT1 WILD-TYPE    119    107     70
D555V9, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               1               107
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNPNAT1 MUTATED        3      1      1      0      0
  GNPNAT1 WILD-TYPE     85     65     44     55     47
D555V10, multiclass
        clus
vv       GNPNAT1 MUTATED GNPNAT1 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               1                65
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(556) Variable = ALDH2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH2 MUTATED        1     12      0      0
  ALDH2 WILD-TYPE    203    125     47      3
D556V1, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            12             125
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALDH2 MUTATED        0      8      1      0      1
  ALDH2 WILD-TYPE     39     88     43     88     79
D556V2, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             8              88
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALDH2 MUTATED        2      2      3      0      4
  ALDH2 WILD-TYPE     24     77     70     82     54
D556V3, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH2 MUTATED        3      7      1      0
  ALDH2 WILD-TYPE    124     44     70     69
D556V4, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             7              44
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALDH2 MUTATED        0      1      7      2      2
  ALDH2 WILD-TYPE     84     84     78     67     45
D556V5, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             7              78
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALDH2 MUTATED        2      0      1      9
  ALDH2 WILD-TYPE     93     74    120     71
D556V6, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ALDH2 MUTATED        3      6      3      1      0      0
  ALDH2 WILD-TYPE     49     58     69    103     40     59
D556V7, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             6              58
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALDH2 MUTATED       12      0      1
  ALDH2 WILD-TYPE    205     75     98
D556V8, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALDH2 MUTATED        6      1      2
  ALDH2 WILD-TYPE    115    107     70
D556V9, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALDH2 MUTATED        4      0      2      0      3
  ALDH2 WILD-TYPE     84     66     43     55     44
D556V10, multiclass
        clus
vv       ALDH2 MUTATED ALDH2 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(557) Variable = TMEM55A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM55A MUTATED        1      2      0      0
  TMEM55A WILD-TYPE    203    135     47      3
D557V1, multiclass
        clus
vv       TMEM55A MUTATED TMEM55A WILD-TYPE
  CLUS_1               1               203
  CLUS_2               2               135
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM55A MUTATED        0      2      0      0      0
  TMEM55A WILD-TYPE     39     94     44     88     80
D557V2, multiclass
[1] "Remove cluster labels:" "TMEM55A MUTATED"       
clus
  TMEM55A MUTATED TMEM55A WILD-TYPE 
                2               345 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-6452        TCGA-BR-6453 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7703        TCGA-BR-7704        TCGA-BR-7707        TCGA-BR-7715 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7716        TCGA-BR-7717        TCGA-BR-7722        TCGA-BR-7723 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8060 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8077        TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8081 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8284        TCGA-BR-8285        TCGA-BR-8286        TCGA-BR-8289 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8360 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8366 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8367        TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8370 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373        TCGA-BR-8380 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8484        TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8487 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8588        TCGA-BR-8589        TCGA-BR-8590        TCGA-BR-8591 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8592        TCGA-BR-8676        TCGA-BR-8677        TCGA-BR-8678 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8679        TCGA-BR-8680        TCGA-BR-8682        TCGA-BR-8683 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8686        TCGA-BR-8687        TCGA-BR-8690        TCGA-BR-A44T 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A44U        TCGA-BR-A452        TCGA-BR-A453        TCGA-BR-A4CQ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU        TCGA-BR-A4IV 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1        TCGA-BR-A4J2 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4J4        TCGA-BR-A4J5        TCGA-BR-A4J6        TCGA-BR-A4J7 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4PE        TCGA-BR-A4PF 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4QI        TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-5803        TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8525        TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8528 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8533        TCGA-CD-8534        TCGA-CD-8535        TCGA-CD-8536 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489        TCGA-CD-A48A 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MJ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-5716        TCGA-CG-5717 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8573 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576        TCGA-D7-8578 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU        TCGA-D7-A4YV 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-A4YX        TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-D7-A6ET 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-A6EV        TCGA-D7-A6EX        TCGA-D7-A6EY        TCGA-D7-A6EZ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-A6F0        TCGA-D7-A6F2        TCGA-D7-A747        TCGA-D7-A748 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-A74A        TCGA-D7-A74B        TCGA-EQ-5647        TCGA-EQ-8122 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-EQ-A4SO        TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-F1-A448        TCGA-F1-A72C        TCGA-FP-7735        TCGA-FP-7829 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-FP-7916        TCGA-FP-7998        TCGA-FP-8099        TCGA-FP-8209 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-FP-8210        TCGA-FP-8211        TCGA-FP-8631        TCGA-FP-A4BE 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-FP-A4BF        TCGA-FP-A8CX        TCGA-FP-A9TM        TCGA-HF-7131 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HF-7132        TCGA-HF-7133        TCGA-HF-7134        TCGA-HF-7136 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HF-A5NB        TCGA-HJ-7597        TCGA-HU-8238        TCGA-HU-8243 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-8244        TCGA-HU-8249        TCGA-HU-8602        TCGA-HU-8604 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-8608        TCGA-HU-8610        TCGA-HU-A4G2        TCGA-HU-A4G3 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4G6        TCGA-HU-A4G8        TCGA-HU-A4G9        TCGA-HU-A4GC 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GD        TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GJ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GN        TCGA-HU-A4GP        TCGA-HU-A4GQ        TCGA-HU-A4GT 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GU        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H0 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4H2        TCGA-HU-A4H3        TCGA-HU-A4H4        TCGA-HU-A4H5 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4H6        TCGA-HU-A4H8        TCGA-HU-A4HB        TCGA-HU-A4HD 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-A6RI        TCGA-IN-A6RJ        TCGA-IN-A6RL        TCGA-IN-A6RN 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-A6RO        TCGA-IN-A6RP        TCGA-IN-A6RR        TCGA-IN-A6RS 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-A7NR        TCGA-IN-A7NT        TCGA-IN-A7NU        TCGA-IN-AB1V 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-AB1X        TCGA-IP-7968        TCGA-KB-A6F5        TCGA-KB-A6F7 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-KB-A93G        TCGA-KB-A93J        TCGA-MX-A5UG        TCGA-MX-A5UJ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-MX-A663        TCGA-MX-A666        TCGA-R5-A7O7        TCGA-R5-A7ZE 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-R5-A7ZF        TCGA-R5-A7ZI        TCGA-R5-A7ZR        TCGA-R5-A804 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-R5-A805        TCGA-RD-A7BS        TCGA-RD-A7BT        TCGA-RD-A7BW 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-RD-A7C1        TCGA-RD-A8MV        TCGA-RD-A8MW        TCGA-RD-A8N0 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-RD-A8N1        TCGA-RD-A8N2        TCGA-RD-A8N4        TCGA-RD-A8N5 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-RD-A8N6        TCGA-RD-A8N9        TCGA-SW-A7EA        TCGA-SW-A7EB 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-A8DL        TCGA-VQ-A8DT        TCGA-VQ-A8DU        TCGA-VQ-A8DV 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-A8DZ        TCGA-VQ-A8E2        TCGA-VQ-A8E7        TCGA-VQ-A8P2 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-A8P3        TCGA-VQ-A8PE        TCGA-VQ-A8PK        TCGA-VQ-A8PM 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-A8PQ        TCGA-VQ-A91Q        TCGA-VQ-A91U        TCGA-VQ-A91V 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-A92D        TCGA-VQ-A94T        TCGA-VQ-AA64        TCGA-VQ-AA68 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-AA69        TCGA-VQ-AA6A        TCGA-VQ-AA6B        TCGA-VQ-AA6F 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-AA6G        TCGA-VQ-AA6I        TCGA-VQ-AA6J        TCGA-VQ-AA6K 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-ZA-A8F6 
"TMEM55A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM55A MUTATED        0      1      1      0      1
  TMEM55A WILD-TYPE     26     78     72     82     57
D557V3, multiclass
        clus
vv       TMEM55A MUTATED TMEM55A WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                78
  CLUS_3               1                72
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM55A MUTATED        1      2      0      0
  TMEM55A WILD-TYPE    126     49     71     69
D557V4, multiclass
        clus
vv       TMEM55A MUTATED TMEM55A WILD-TYPE
  CLUS_1               1               126
  CLUS_2               2                49
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM55A MUTATED        0      1      2      0      0
  TMEM55A WILD-TYPE     84     84     83     69     47
D557V5, multiclass
        clus
vv       TMEM55A MUTATED TMEM55A WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               2                83
  CLUS_4               0                69
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM55A MUTATED        0      1      0      2
  TMEM55A WILD-TYPE     95     73    121     78
D557V6, multiclass
        clus
vv       TMEM55A MUTATED TMEM55A WILD-TYPE
  CLUS_1               0                95
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM55A MUTATED        0      1      1      1      0      0
  TMEM55A WILD-TYPE     52     63     71    103     40     59
D557V7, multiclass
        clus
vv       TMEM55A MUTATED TMEM55A WILD-TYPE
  CLUS_1               0                52
  CLUS_2               1                63
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM55A MUTATED        2      1      0
  TMEM55A WILD-TYPE    215     74     99
D557V8, multiclass
        clus
vv       TMEM55A MUTATED TMEM55A WILD-TYPE
  CLUS_1               2               215
  CLUS_2               1                74
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM55A MUTATED        1      1      0
  TMEM55A WILD-TYPE    120    107     72
D557V9, multiclass
[1] "Remove cluster labels:" "TMEM55A MUTATED"       
clus
  TMEM55A MUTATED TMEM55A WILD-TYPE 
                2               299 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-6452        TCGA-BR-6453 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7703        TCGA-BR-7704        TCGA-BR-7707        TCGA-BR-7715 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7717        TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7957        TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8059        TCGA-BR-8060        TCGA-BR-8077        TCGA-BR-8078 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8360 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8368 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8369        TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8373        TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8485        TCGA-BR-8486 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8590        TCGA-BR-8591 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8592        TCGA-BR-8676        TCGA-BR-8677        TCGA-BR-8678 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8679        TCGA-BR-8680        TCGA-BR-8682        TCGA-BR-8683 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8687        TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A452 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A453        TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4IU        TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4J1        TCGA-BR-A4J5        TCGA-BR-A4J6        TCGA-BR-A4J7 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4QI        TCGA-BR-A4QL 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5804 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525        TCGA-CD-8526 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8527        TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8532        TCGA-CD-8533        TCGA-CD-8534        TCGA-CD-8535 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CG-4437 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-4441        TCGA-CG-4449        TCGA-CG-5716        TCGA-CG-5717 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8574 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-8575        TCGA-D7-8576        TCGA-D7-8578        TCGA-D7-8579 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-A4YT        TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YY 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-A4Z0        TCGA-D7-A6ET        TCGA-D7-A6EV        TCGA-D7-A6EX 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-A6EY        TCGA-D7-A6EZ        TCGA-D7-A6F0        TCGA-D7-A6F2 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-A747        TCGA-D7-A748        TCGA-D7-A74A        TCGA-D7-A74B 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-EQ-5647        TCGA-EQ-8122        TCGA-F1-6177        TCGA-F1-6874 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7735        TCGA-FP-7829 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-FP-7998        TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-FP-8211        TCGA-FP-8631        TCGA-FP-A4BE        TCGA-FP-A9TM 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HF-7131        TCGA-HF-7132        TCGA-HF-7134        TCGA-HF-7136 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-8238        TCGA-HU-8243        TCGA-HU-8602        TCGA-HU-8604 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-8608        TCGA-HU-A4G3        TCGA-HU-A4G8        TCGA-HU-A4GC 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GD        TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GJ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GN        TCGA-HU-A4GQ        TCGA-HU-A4GT        TCGA-HU-A4GX 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GY        TCGA-HU-A4H2        TCGA-HU-A4H4        TCGA-HU-A4H5 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4H6        TCGA-HU-A4H8        TCGA-HU-A4HB        TCGA-IN-7806 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663        TCGA-IN-A6RI 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-A6RJ        TCGA-IN-A6RL        TCGA-IN-A6RN        TCGA-IN-A6RP 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-A7NR        TCGA-IN-A7NT        TCGA-IN-A7NU        TCGA-IN-AB1V 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-AB1X        TCGA-IP-7968        TCGA-KB-A6F5        TCGA-KB-A6F7 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-KB-A93J        TCGA-MX-A5UG        TCGA-MX-A5UJ        TCGA-MX-A663 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-MX-A666        TCGA-R5-A7O7        TCGA-R5-A7ZE        TCGA-R5-A7ZF 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-R5-A7ZI        TCGA-R5-A7ZR        TCGA-R5-A804        TCGA-R5-A805 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-RD-A7BS        TCGA-RD-A7BW        TCGA-RD-A7C1        TCGA-RD-A8MV 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-RD-A8MW        TCGA-RD-A8N0        TCGA-RD-A8N1        TCGA-RD-A8N5 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-RD-A8N6        TCGA-RD-A8N9        TCGA-SW-A7EA        TCGA-SW-A7EB 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-A8DL        TCGA-VQ-A8DU        TCGA-VQ-A8DV        TCGA-VQ-A8E2 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-A8E7        TCGA-VQ-A8P2        TCGA-VQ-A8P3        TCGA-VQ-A8PE 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-A8PK        TCGA-VQ-A8PM        TCGA-VQ-A8PQ        TCGA-VQ-A91Q 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-A91U        TCGA-VQ-A91V        TCGA-VQ-A92D        TCGA-VQ-A94T 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-AA64        TCGA-VQ-AA68        TCGA-VQ-AA69        TCGA-VQ-AA6A 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-AA6B        TCGA-VQ-AA6F        TCGA-VQ-AA6G        TCGA-VQ-AA6I 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-AA6J        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM55A MUTATED        0      1      0      0      1
  TMEM55A WILD-TYPE     88     65     45     55     46
D557V10, multiclass
[1] "Remove cluster labels:" "TMEM55A MUTATED"       
clus
  TMEM55A MUTATED TMEM55A WILD-TYPE 
                2               299 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-6452        TCGA-BR-6453 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7703        TCGA-BR-7704        TCGA-BR-7707        TCGA-BR-7715 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7717        TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-7957        TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8059        TCGA-BR-8060        TCGA-BR-8077        TCGA-BR-8078 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8360 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8368 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8369        TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8373        TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8485        TCGA-BR-8486 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8590        TCGA-BR-8591 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8592        TCGA-BR-8676        TCGA-BR-8677        TCGA-BR-8678 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8679        TCGA-BR-8680        TCGA-BR-8682        TCGA-BR-8683 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-8687        TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A452 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A453        TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4IU        TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4J1        TCGA-BR-A4J5        TCGA-BR-A4J6        TCGA-BR-A4J7 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4QI        TCGA-BR-A4QL 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5804 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525        TCGA-CD-8526 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8527        TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8532        TCGA-CD-8533        TCGA-CD-8534        TCGA-CD-8535 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CG-4437 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-4441        TCGA-CG-4449        TCGA-CG-5716        TCGA-CG-5717 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8574 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-8575        TCGA-D7-8576        TCGA-D7-8578        TCGA-D7-8579 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-A4YT        TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YY 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-A4Z0        TCGA-D7-A6ET        TCGA-D7-A6EV        TCGA-D7-A6EX 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-A6EY        TCGA-D7-A6EZ        TCGA-D7-A6F0        TCGA-D7-A6F2 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-D7-A747        TCGA-D7-A748        TCGA-D7-A74A        TCGA-D7-A74B 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-EQ-5647        TCGA-EQ-8122        TCGA-F1-6177        TCGA-F1-6874 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7735        TCGA-FP-7829 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-FP-7998        TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-FP-8211        TCGA-FP-8631        TCGA-FP-A4BE        TCGA-FP-A9TM 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HF-7131        TCGA-HF-7132        TCGA-HF-7134        TCGA-HF-7136 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-8238        TCGA-HU-8243        TCGA-HU-8602        TCGA-HU-8604 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-8608        TCGA-HU-A4G3        TCGA-HU-A4G8        TCGA-HU-A4GC 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GD        TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GJ 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GN        TCGA-HU-A4GQ        TCGA-HU-A4GT        TCGA-HU-A4GX 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4GY        TCGA-HU-A4H2        TCGA-HU-A4H4        TCGA-HU-A4H5 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-HU-A4H6        TCGA-HU-A4H8        TCGA-HU-A4HB        TCGA-IN-7806 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663        TCGA-IN-A6RI 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-A6RJ        TCGA-IN-A6RL        TCGA-IN-A6RN        TCGA-IN-A6RP 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-A7NR        TCGA-IN-A7NT        TCGA-IN-A7NU        TCGA-IN-AB1V 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-IN-AB1X        TCGA-IP-7968        TCGA-KB-A6F5        TCGA-KB-A6F7 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-KB-A93J        TCGA-MX-A5UG        TCGA-MX-A5UJ        TCGA-MX-A663 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-MX-A666        TCGA-R5-A7O7        TCGA-R5-A7ZE        TCGA-R5-A7ZF 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-R5-A7ZI        TCGA-R5-A7ZR        TCGA-R5-A804        TCGA-R5-A805 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-RD-A7BS        TCGA-RD-A7BW        TCGA-RD-A7C1        TCGA-RD-A8MV 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-RD-A8MW        TCGA-RD-A8N0        TCGA-RD-A8N1        TCGA-RD-A8N5 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-RD-A8N6        TCGA-RD-A8N9        TCGA-SW-A7EA        TCGA-SW-A7EB 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-A8DL        TCGA-VQ-A8DU        TCGA-VQ-A8DV        TCGA-VQ-A8E2 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-A8E7        TCGA-VQ-A8P2        TCGA-VQ-A8P3        TCGA-VQ-A8PE 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-A8PK        TCGA-VQ-A8PM        TCGA-VQ-A8PQ        TCGA-VQ-A91Q 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-A91U        TCGA-VQ-A91V        TCGA-VQ-A92D        TCGA-VQ-A94T 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-AA64        TCGA-VQ-AA68        TCGA-VQ-AA69        TCGA-VQ-AA6A 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-AA6B        TCGA-VQ-AA6F        TCGA-VQ-AA6G        TCGA-VQ-AA6I 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 
       TCGA-VQ-AA6J        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" "TMEM55A WILD-TYPE" 

Clustering(558) Variable = SPATA5L1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA5L1 MUTATED        1      5      0      0
  SPATA5L1 WILD-TYPE    203    132     47      3
D558V1, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                5                132
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPATA5L1 MUTATED        1      1      4      0      0
  SPATA5L1 WILD-TYPE     38     95     40     88     80
D558V2, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                1                 95
  CLUS_3                4                 40
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPATA5L1 MUTATED        0      2      1      0      1
  SPATA5L1 WILD-TYPE     26     77     72     82     57
D558V3, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                2                 77
  CLUS_3                1                 72
  CLUS_4                0                 82
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA5L1 MUTATED        0      2      2      0
  SPATA5L1 WILD-TYPE    127     49     69     69
D558V4, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                0                127
  CLUS_2                2                 49
  CLUS_3                2                 69
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPATA5L1 MUTATED        0      1      4      0      0
  SPATA5L1 WILD-TYPE     84     84     81     69     47
D558V5, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                4                 81
  CLUS_4                0                 69
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA5L1 MUTATED        0      1      1      3
  SPATA5L1 WILD-TYPE     95     73    120     77
D558V6, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                0                 95
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                3                 77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPATA5L1 MUTATED        1      2      1      2      0      0
  SPATA5L1 WILD-TYPE     51     62     71    102     40     59
D558V7, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                2                 62
  CLUS_3                1                 71
  CLUS_4                2                102
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SPATA5L1 MUTATED        4      2      0
  SPATA5L1 WILD-TYPE    213     73     99
D558V8, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                4                213
  CLUS_2                2                 73
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SPATA5L1 MUTATED        2      1      2
  SPATA5L1 WILD-TYPE    119    107     70
D558V9, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                2                119
  CLUS_2                1                107
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPATA5L1 MUTATED        2      2      1      0      0
  SPATA5L1 WILD-TYPE     86     64     44     55     47
D558V10, multiclass
        clus
vv       SPATA5L1 MUTATED SPATA5L1 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                2                 64
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(559) Variable = CDC42EP1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC42EP1 MUTATED        2      2      0      0
  CDC42EP1 WILD-TYPE    202    135     47      3
D559V1, multiclass
        clus
vv       CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  CLUS_1                2                202
  CLUS_2                2                135
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC42EP1 MUTATED        0      4      0      0      0
  CDC42EP1 WILD-TYPE     39     92     44     88     80
D559V2, multiclass
        clus
vv       CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                4                 92
  CLUS_3                0                 44
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC42EP1 MUTATED        0      1      3      0      0
  CDC42EP1 WILD-TYPE     26     78     70     82     58
D559V3, multiclass
        clus
vv       CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                1                 78
  CLUS_3                3                 70
  CLUS_4                0                 82
  CLUS_5                0                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC42EP1 MUTATED        0      3      0      1
  CDC42EP1 WILD-TYPE    127     48     71     68
D559V4, multiclass
        clus
vv       CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  CLUS_1                0                127
  CLUS_2                3                 48
  CLUS_3                0                 71
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC42EP1 MUTATED        0      1      3      0      0
  CDC42EP1 WILD-TYPE     84     84     82     69     47
D559V5, multiclass
        clus
vv       CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                3                 82
  CLUS_4                0                 69
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC42EP1 MUTATED        0      1      0      3
  CDC42EP1 WILD-TYPE     95     73    121     77
D559V6, multiclass
        clus
vv       CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  CLUS_1                0                 95
  CLUS_2                1                 73
  CLUS_3                0                121
  CLUS_4                3                 77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC42EP1 MUTATED        2      0      1      0      1      0
  CDC42EP1 WILD-TYPE     50     64     71    104     39     59
D559V7, multiclass
        clus
vv       CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                0                 64
  CLUS_3                1                 71
  CLUS_4                0                104
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CDC42EP1 MUTATED        2      0      2
  CDC42EP1 WILD-TYPE    215     75     97
D559V8, multiclass
        clus
vv       CDC42EP1 MUTATED CDC42EP1 WILD-TYPE
  CLUS_1                2                215
  CLUS_2                0                 75
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CDC42EP1 MUTATED        2      0      0
  CDC42EP1 WILD-TYPE    119    108     72
D559V9, multiclass
[1] "Remove cluster labels:" "CDC42EP1 MUTATED"      
clus
  CDC42EP1 MUTATED CDC42EP1 WILD-TYPE 
                 2                299 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-B7-A5TI 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-B7-A5TJ         TCGA-B7-A5TK         TCGA-B7-A5TN 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-6452         TCGA-BR-6453         TCGA-BR-6454 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6456         TCGA-BR-6457 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-6458         TCGA-BR-6563         TCGA-BR-6564 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-6565         TCGA-BR-6566         TCGA-BR-6705 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-6706         TCGA-BR-6707         TCGA-BR-6709 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-6710         TCGA-BR-6801         TCGA-BR-6802 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-6803         TCGA-BR-6852         TCGA-BR-7196 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-7197         TCGA-BR-7703         TCGA-BR-7704 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-7707         TCGA-BR-7715         TCGA-BR-7717 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-7723         TCGA-BR-7851         TCGA-BR-7901 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-7957         TCGA-BR-7958         TCGA-BR-7959 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8058         TCGA-BR-8059         TCGA-BR-8060 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8077         TCGA-BR-8078         TCGA-BR-8080 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8284         TCGA-BR-8286         TCGA-BR-8289 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8291         TCGA-BR-8295         TCGA-BR-8297 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8360         TCGA-BR-8363         TCGA-BR-8364 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8365         TCGA-BR-8368         TCGA-BR-8369 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8373         TCGA-BR-8380         TCGA-BR-8381 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8382         TCGA-BR-8384         TCGA-BR-8483 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8485         TCGA-BR-8486         TCGA-BR-8487 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8588         TCGA-BR-8590         TCGA-BR-8591 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8592         TCGA-BR-8676         TCGA-BR-8677 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8678         TCGA-BR-8679         TCGA-BR-8680 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8682         TCGA-BR-8683         TCGA-BR-8687 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8690         TCGA-BR-A44T         TCGA-BR-A452 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-A453         TCGA-BR-A4CQ         TCGA-BR-A4CR 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-A4CS         TCGA-BR-A4IU         TCGA-BR-A4IV 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-A4IY         TCGA-BR-A4IZ         TCGA-BR-A4J1 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-A4J5         TCGA-BR-A4J6         TCGA-BR-A4J7 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-A4J8         TCGA-BR-A4PD         TCGA-BR-A4QI 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-A4QL         TCGA-BR-A4QM         TCGA-CD-5798 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-5799         TCGA-CD-5800         TCGA-CD-5801 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-5802         TCGA-CD-5803         TCGA-CD-5804 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CD-8524         TCGA-CD-8525 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-8526         TCGA-CD-8527         TCGA-CD-8529 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-8530         TCGA-CD-8531         TCGA-CD-8532 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-8533         TCGA-CD-8534         TCGA-CD-8535 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-8536         TCGA-CD-A486         TCGA-CD-A487 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-A489         TCGA-CD-A48C         TCGA-CD-A4MG 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-A4MH         TCGA-CD-A4MI         TCGA-CG-4437 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CG-4441         TCGA-CG-4449         TCGA-CG-5716 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-6822         TCGA-D7-8570         TCGA-D7-8572 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-8574         TCGA-D7-8575         TCGA-D7-8576 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-8578         TCGA-D7-8579         TCGA-D7-A4YT 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-A4YU         TCGA-D7-A4YY         TCGA-D7-A4Z0 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-A6ET         TCGA-D7-A6EV         TCGA-D7-A6EX 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-A6EY         TCGA-D7-A6EZ         TCGA-D7-A6F0 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-A6F2         TCGA-D7-A747         TCGA-D7-A748 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-A74A         TCGA-D7-A74B         TCGA-EQ-5647 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-EQ-8122         TCGA-F1-6177         TCGA-F1-6874 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-F1-6875         TCGA-F1-A448         TCGA-FP-7735 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-FP-7829         TCGA-FP-7998         TCGA-FP-8099 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-FP-8209         TCGA-FP-8210         TCGA-FP-8211 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-FP-8631         TCGA-FP-A4BE         TCGA-FP-A9TM 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HF-7131         TCGA-HF-7132         TCGA-HF-7134 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HF-7136         TCGA-HU-8238         TCGA-HU-8243 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HU-8602         TCGA-HU-8604         TCGA-HU-8608 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HU-A4G3         TCGA-HU-A4G8         TCGA-HU-A4GC 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HU-A4GD         TCGA-HU-A4GF         TCGA-HU-A4GH 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HU-A4GJ         TCGA-HU-A4GN         TCGA-HU-A4GQ 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HU-A4GT         TCGA-HU-A4GX         TCGA-HU-A4GY 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HU-A4H2         TCGA-HU-A4H4         TCGA-HU-A4H5 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HU-A4H6         TCGA-HU-A4H8         TCGA-HU-A4HB 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-IN-7806         TCGA-IN-7808         TCGA-IN-8462 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-IN-8663         TCGA-IN-A6RI         TCGA-IN-A6RJ 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-IN-A6RL         TCGA-IN-A6RN         TCGA-IN-A6RP 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-IN-A7NR         TCGA-IN-A7NT         TCGA-IN-A7NU 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-IN-AB1V         TCGA-IN-AB1X         TCGA-IP-7968 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-KB-A6F5         TCGA-KB-A6F7         TCGA-KB-A93J 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-MX-A5UG         TCGA-MX-A5UJ         TCGA-MX-A663 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-MX-A666         TCGA-R5-A7O7         TCGA-R5-A7ZE 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-R5-A7ZF         TCGA-R5-A7ZI         TCGA-R5-A7ZR 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-R5-A804         TCGA-R5-A805         TCGA-RD-A7BS 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-RD-A7BW         TCGA-RD-A7C1         TCGA-RD-A8MV 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-RD-A8MW         TCGA-RD-A8N0         TCGA-RD-A8N1 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-RD-A8N5         TCGA-RD-A8N6         TCGA-RD-A8N9 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-SW-A7EA         TCGA-SW-A7EB         TCGA-VQ-A8DL 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-A8DU         TCGA-VQ-A8DV         TCGA-VQ-A8E2 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-A8E7         TCGA-VQ-A8P2         TCGA-VQ-A8P3 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-A8PE         TCGA-VQ-A8PK         TCGA-VQ-A8PM 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-A8PQ         TCGA-VQ-A91Q         TCGA-VQ-A91U 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-A91V         TCGA-VQ-A92D         TCGA-VQ-A94T 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-AA64         TCGA-VQ-AA68         TCGA-VQ-AA69 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-AA6A         TCGA-VQ-AA6B         TCGA-VQ-AA6F 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-AA6G         TCGA-VQ-AA6I         TCGA-VQ-AA6J 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-AA6K         TCGA-ZA-A8F6 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC42EP1 MUTATED        1      0      0      0      1
  CDC42EP1 WILD-TYPE     87     66     45     55     46
D559V10, multiclass
[1] "Remove cluster labels:" "CDC42EP1 MUTATED"      
clus
  CDC42EP1 MUTATED CDC42EP1 WILD-TYPE 
                 2                299 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-B7-A5TI 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-B7-A5TJ         TCGA-B7-A5TK         TCGA-B7-A5TN 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-6452         TCGA-BR-6453         TCGA-BR-6454 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6456         TCGA-BR-6457 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-6458         TCGA-BR-6563         TCGA-BR-6564 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-6565         TCGA-BR-6566         TCGA-BR-6705 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-6706         TCGA-BR-6707         TCGA-BR-6709 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-6710         TCGA-BR-6801         TCGA-BR-6802 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-6803         TCGA-BR-6852         TCGA-BR-7196 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-7197         TCGA-BR-7703         TCGA-BR-7704 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-7707         TCGA-BR-7715         TCGA-BR-7717 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-7723         TCGA-BR-7851         TCGA-BR-7901 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-7957         TCGA-BR-7958         TCGA-BR-7959 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8058         TCGA-BR-8059         TCGA-BR-8060 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8077         TCGA-BR-8078         TCGA-BR-8080 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8284         TCGA-BR-8286         TCGA-BR-8289 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8291         TCGA-BR-8295         TCGA-BR-8297 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8360         TCGA-BR-8363         TCGA-BR-8364 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8365         TCGA-BR-8368         TCGA-BR-8369 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8373         TCGA-BR-8380         TCGA-BR-8381 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8382         TCGA-BR-8384         TCGA-BR-8483 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8485         TCGA-BR-8486         TCGA-BR-8487 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8588         TCGA-BR-8590         TCGA-BR-8591 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8592         TCGA-BR-8676         TCGA-BR-8677 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8678         TCGA-BR-8679         TCGA-BR-8680 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8682         TCGA-BR-8683         TCGA-BR-8687 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-8690         TCGA-BR-A44T         TCGA-BR-A452 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-A453         TCGA-BR-A4CQ         TCGA-BR-A4CR 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-A4CS         TCGA-BR-A4IU         TCGA-BR-A4IV 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-A4IY         TCGA-BR-A4IZ         TCGA-BR-A4J1 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-A4J5         TCGA-BR-A4J6         TCGA-BR-A4J7 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-A4J8         TCGA-BR-A4PD         TCGA-BR-A4QI 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-BR-A4QL         TCGA-BR-A4QM         TCGA-CD-5798 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-5799         TCGA-CD-5800         TCGA-CD-5801 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-5802         TCGA-CD-5803         TCGA-CD-5804 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CD-8524         TCGA-CD-8525 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-8526         TCGA-CD-8527         TCGA-CD-8529 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-8530         TCGA-CD-8531         TCGA-CD-8532 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-8533         TCGA-CD-8534         TCGA-CD-8535 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-8536         TCGA-CD-A486         TCGA-CD-A487 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-A489         TCGA-CD-A48C         TCGA-CD-A4MG 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CD-A4MH         TCGA-CD-A4MI         TCGA-CG-4437 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CG-4441         TCGA-CG-4449         TCGA-CG-5716 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-6822         TCGA-D7-8570         TCGA-D7-8572 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-8574         TCGA-D7-8575         TCGA-D7-8576 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-8578         TCGA-D7-8579         TCGA-D7-A4YT 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-A4YU         TCGA-D7-A4YY         TCGA-D7-A4Z0 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-A6ET         TCGA-D7-A6EV         TCGA-D7-A6EX 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-A6EY         TCGA-D7-A6EZ         TCGA-D7-A6F0 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-A6F2         TCGA-D7-A747         TCGA-D7-A748 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-D7-A74A         TCGA-D7-A74B         TCGA-EQ-5647 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-EQ-8122         TCGA-F1-6177         TCGA-F1-6874 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-F1-6875         TCGA-F1-A448         TCGA-FP-7735 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-FP-7829         TCGA-FP-7998         TCGA-FP-8099 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-FP-8209         TCGA-FP-8210         TCGA-FP-8211 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-FP-8631         TCGA-FP-A4BE         TCGA-FP-A9TM 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HF-7131         TCGA-HF-7132         TCGA-HF-7134 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HF-7136         TCGA-HU-8238         TCGA-HU-8243 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HU-8602         TCGA-HU-8604         TCGA-HU-8608 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HU-A4G3         TCGA-HU-A4G8         TCGA-HU-A4GC 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HU-A4GD         TCGA-HU-A4GF         TCGA-HU-A4GH 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HU-A4GJ         TCGA-HU-A4GN         TCGA-HU-A4GQ 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HU-A4GT         TCGA-HU-A4GX         TCGA-HU-A4GY 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HU-A4H2         TCGA-HU-A4H4         TCGA-HU-A4H5 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-HU-A4H6         TCGA-HU-A4H8         TCGA-HU-A4HB 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-IN-7806         TCGA-IN-7808         TCGA-IN-8462 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-IN-8663         TCGA-IN-A6RI         TCGA-IN-A6RJ 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-IN-A6RL         TCGA-IN-A6RN         TCGA-IN-A6RP 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-IN-A7NR         TCGA-IN-A7NT         TCGA-IN-A7NU 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-IN-AB1V         TCGA-IN-AB1X         TCGA-IP-7968 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-KB-A6F5         TCGA-KB-A6F7         TCGA-KB-A93J 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-MX-A5UG         TCGA-MX-A5UJ         TCGA-MX-A663 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-MX-A666         TCGA-R5-A7O7         TCGA-R5-A7ZE 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-R5-A7ZF         TCGA-R5-A7ZI         TCGA-R5-A7ZR 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-R5-A804         TCGA-R5-A805         TCGA-RD-A7BS 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-RD-A7BW         TCGA-RD-A7C1         TCGA-RD-A8MV 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-RD-A8MW         TCGA-RD-A8N0         TCGA-RD-A8N1 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-RD-A8N5         TCGA-RD-A8N6         TCGA-RD-A8N9 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-SW-A7EA         TCGA-SW-A7EB         TCGA-VQ-A8DL 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-A8DU         TCGA-VQ-A8DV         TCGA-VQ-A8E2 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-A8E7         TCGA-VQ-A8P2         TCGA-VQ-A8P3 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-A8PE         TCGA-VQ-A8PK         TCGA-VQ-A8PM 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-A8PQ         TCGA-VQ-A91Q         TCGA-VQ-A91U 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-A91V         TCGA-VQ-A92D         TCGA-VQ-A94T 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-AA64         TCGA-VQ-AA68         TCGA-VQ-AA69 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-AA6A         TCGA-VQ-AA6B         TCGA-VQ-AA6F 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-AA6G         TCGA-VQ-AA6I         TCGA-VQ-AA6J 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 
        TCGA-VQ-AA6K         TCGA-ZA-A8F6 
"CDC42EP1 WILD-TYPE" "CDC42EP1 WILD-TYPE" 

Clustering(560) Variable = SPATA20 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA20 MUTATED        4     11      2      0
  SPATA20 WILD-TYPE    200    126     45      3
D560V1, multiclass
        clus
vv       SPATA20 MUTATED SPATA20 WILD-TYPE
  CLUS_1               4               200
  CLUS_2              11               126
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPATA20 MUTATED        1      8      0      3      3
  SPATA20 WILD-TYPE     38     88     44     85     77
D560V2, multiclass
        clus
vv       SPATA20 MUTATED SPATA20 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               8                88
  CLUS_3               0                44
  CLUS_4               3                85
  CLUS_5               3                77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPATA20 MUTATED        0      2      5      2      5
  SPATA20 WILD-TYPE     26     77     68     80     53
D560V3, multiclass
        clus
vv       SPATA20 MUTATED SPATA20 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               5                68
  CLUS_4               2                80
  CLUS_5               5                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA20 MUTATED        3      6      2      3
  SPATA20 WILD-TYPE    124     45     69     66
D560V4, multiclass
        clus
vv       SPATA20 MUTATED SPATA20 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               6                45
  CLUS_3               2                69
  CLUS_4               3                66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPATA20 MUTATED        2      5      7      1      2
  SPATA20 WILD-TYPE     82     80     78     68     45
D560V5, multiclass
        clus
vv       SPATA20 MUTATED SPATA20 WILD-TYPE
  CLUS_1               2                82
  CLUS_2               5                80
  CLUS_3               7                78
  CLUS_4               1                68
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA20 MUTATED        3      5      3      6
  SPATA20 WILD-TYPE     92     69    118     74
D560V6, multiclass
        clus
vv       SPATA20 MUTATED SPATA20 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               5                69
  CLUS_3               3               118
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPATA20 MUTATED        4      2      3      6      0      2
  SPATA20 WILD-TYPE     48     62     69     98     40     57
D560V7, multiclass
        clus
vv       SPATA20 MUTATED SPATA20 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               2                62
  CLUS_3               3                69
  CLUS_4               6                98
  CLUS_5               0                40
  CLUS_6               2                57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPATA20 MUTATED       10      2      5
  SPATA20 WILD-TYPE    207     73     94
D560V8, multiclass
        clus
vv       SPATA20 MUTATED SPATA20 WILD-TYPE
  CLUS_1              10               207
  CLUS_2               2                73
  CLUS_3               5                94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPATA20 MUTATED        3      7      4
  SPATA20 WILD-TYPE    118    101     68
D560V9, multiclass
        clus
vv       SPATA20 MUTATED SPATA20 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               7               101
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPATA20 MUTATED        3      3      1      4      3
  SPATA20 WILD-TYPE     85     63     44     51     44
D560V10, multiclass
        clus
vv       SPATA20 MUTATED SPATA20 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               3                63
  CLUS_3               1                44
  CLUS_4               4                51
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(561) Variable = KIN MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIN MUTATED        0      7      0      0
  KIN WILD-TYPE    204    130     47      3
D561V1, multiclass
        clus
vv       KIN MUTATED KIN WILD-TYPE
  CLUS_1           0           204
  CLUS_2           7           130
  CLUS_3           0            47
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIN MUTATED        1      4      2      0      0
  KIN WILD-TYPE     38     92     42     88     80
D561V2, multiclass
        clus
vv       KIN MUTATED KIN WILD-TYPE
  CLUS_1           1            38
  CLUS_2           4            92
  CLUS_3           2            42
  CLUS_4           0            88
  CLUS_5           0            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIN MUTATED        0      2      2      0      2
  KIN WILD-TYPE     26     77     71     82     56
D561V3, multiclass
        clus
vv       KIN MUTATED KIN WILD-TYPE
  CLUS_1           0            26
  CLUS_2           2            77
  CLUS_3           2            71
  CLUS_4           0            82
  CLUS_5           2            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIN MUTATED        1      2      2      1
  KIN WILD-TYPE    126     49     69     68
D561V4, multiclass
        clus
vv       KIN MUTATED KIN WILD-TYPE
  CLUS_1           1           126
  CLUS_2           2            49
  CLUS_3           2            69
  CLUS_4           1            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIN MUTATED        0      2      4      1      0
  KIN WILD-TYPE     84     83     81     68     47
D561V5, multiclass
        clus
vv       KIN MUTATED KIN WILD-TYPE
  CLUS_1           0            84
  CLUS_2           2            83
  CLUS_3           4            81
  CLUS_4           1            68
  CLUS_5           0            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIN MUTATED        2      1      0      4
  KIN WILD-TYPE     93     73    121     76
D561V6, multiclass
        clus
vv       KIN MUTATED KIN WILD-TYPE
  CLUS_1           2            93
  CLUS_2           1            73
  CLUS_3           0           121
  CLUS_4           4            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIN MUTATED        3      2      1      0      1      0
  KIN WILD-TYPE     49     62     71    104     39     59
D561V7, multiclass
        clus
vv       KIN MUTATED KIN WILD-TYPE
  CLUS_1           3            49
  CLUS_2           2            62
  CLUS_3           1            71
  CLUS_4           0           104
  CLUS_5           1            39
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIN MUTATED        6      0      1
  KIN WILD-TYPE    211     75     98
D561V8, multiclass
        clus
vv       KIN MUTATED KIN WILD-TYPE
  CLUS_1           6           211
  CLUS_2           0            75
  CLUS_3           1            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  KIN MUTATED        4      0      2
  KIN WILD-TYPE    117    108     70
D561V9, multiclass
        clus
vv       KIN MUTATED KIN WILD-TYPE
  CLUS_1           4           117
  CLUS_2           0           108
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIN MUTATED        3      0      2      0      1
  KIN WILD-TYPE     85     66     43     55     46
D561V10, multiclass
        clus
vv       KIN MUTATED KIN WILD-TYPE
  CLUS_1           3            85
  CLUS_2           0            66
  CLUS_3           2            43
  CLUS_4           0            55
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(562) Variable = TMEM87B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM87B MUTATED        0      5      0      0
  TMEM87B WILD-TYPE    204    132     47      3
D562V1, multiclass
        clus
vv       TMEM87B MUTATED TMEM87B WILD-TYPE
  CLUS_1               0               204
  CLUS_2               5               132
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM87B MUTATED        0      3      0      0      1
  TMEM87B WILD-TYPE     39     93     44     88     79
D562V2, multiclass
        clus
vv       TMEM87B MUTATED TMEM87B WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM87B MUTATED        1      1      3      0      0
  TMEM87B WILD-TYPE     25     78     70     82     58
D562V3, multiclass
        clus
vv       TMEM87B MUTATED TMEM87B WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                78
  CLUS_3               3                70
  CLUS_4               0                82
  CLUS_5               0                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM87B MUTATED        2      3      0      0
  TMEM87B WILD-TYPE    125     48     71     69
D562V4, multiclass
        clus
vv       TMEM87B MUTATED TMEM87B WILD-TYPE
  CLUS_1               2               125
  CLUS_2               3                48
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM87B MUTATED        0      0      3      0      1
  TMEM87B WILD-TYPE     84     85     82     69     46
D562V5, multiclass
        clus
vv       TMEM87B MUTATED TMEM87B WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               3                82
  CLUS_4               0                69
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM87B MUTATED        0      0      1      3
  TMEM87B WILD-TYPE     95     74    120     77
D562V6, multiclass
        clus
vv       TMEM87B MUTATED TMEM87B WILD-TYPE
  CLUS_1               0                95
  CLUS_2               0                74
  CLUS_3               1               120
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM87B MUTATED        2      2      0      1      0      0
  TMEM87B WILD-TYPE     50     62     72    103     40     59
D562V7, multiclass
        clus
vv       TMEM87B MUTATED TMEM87B WILD-TYPE
  CLUS_1               2                50
  CLUS_2               2                62
  CLUS_3               0                72
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM87B MUTATED        5      0      0
  TMEM87B WILD-TYPE    212     75     99
D562V8, multiclass
        clus
vv       TMEM87B MUTATED TMEM87B WILD-TYPE
  CLUS_1               5               212
  CLUS_2               0                75
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM87B MUTATED        3      0      1
  TMEM87B WILD-TYPE    118    108     71
D562V9, multiclass
        clus
vv       TMEM87B MUTATED TMEM87B WILD-TYPE
  CLUS_1               3               118
  CLUS_2               0               108
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM87B MUTATED        1      0      1      0      2
  TMEM87B WILD-TYPE     87     66     44     55     45
D562V10, multiclass
        clus
vv       TMEM87B MUTATED TMEM87B WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(563) Variable = SP100 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP100 MUTATED        7      6      4      0
  SP100 WILD-TYPE    197    131     43      3
D563V1, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             7             197
  CLUS_2             6             131
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SP100 MUTATED        3      6      3      4      1
  SP100 WILD-TYPE     36     90     41     84     79
D563V2, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             6              90
  CLUS_3             3              41
  CLUS_4             4              84
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SP100 MUTATED        1      6      5      1      3
  SP100 WILD-TYPE     25     73     68     81     55
D563V3, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             6              73
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP100 MUTATED        3      5      6      2
  SP100 WILD-TYPE    124     46     65     67
D563V4, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             5              46
  CLUS_3             6              65
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SP100 MUTATED        2      2      7      5      0
  SP100 WILD-TYPE     82     83     78     64     47
D563V5, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             2              83
  CLUS_3             7              78
  CLUS_4             5              64
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP100 MUTATED        5      3      4      4
  SP100 WILD-TYPE     90     71    117     76
D563V6, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             3              71
  CLUS_3             4             117
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SP100 MUTATED        4      4      4      2      2      2
  SP100 WILD-TYPE     48     60     68    102     38     57
D563V7, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             4              60
  CLUS_3             4              68
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP100 MUTATED       14      1      3
  SP100 WILD-TYPE    203     74     96
D563V8, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             1              74
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP100 MUTATED        7      2      6
  SP100 WILD-TYPE    114    106     66
D563V9, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             2             106
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SP100 MUTATED        4      1      4      2      4
  SP100 WILD-TYPE     84     65     41     53     43
D563V10, multiclass
        clus
vv       SP100 MUTATED SP100 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             2              53
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(564) Variable = SOAT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOAT1 MUTATED        0     10      0      0
  SOAT1 WILD-TYPE    204    127     47      3
D564V1, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            10             127
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOAT1 MUTATED        0      6      1      0      1
  SOAT1 WILD-TYPE     39     90     43     88     79
D564V2, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOAT1 MUTATED        1      3      3      0      2
  SOAT1 WILD-TYPE     25     76     70     82     56
D564V3, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOAT1 MUTATED        3      4      2      0
  SOAT1 WILD-TYPE    124     47     69     69
D564V4, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOAT1 MUTATED        1      0      4      2      3
  SOAT1 WILD-TYPE     83     85     81     67     44
D564V5, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             4              81
  CLUS_4             2              67
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOAT1 MUTATED        3      0      1      6
  SOAT1 WILD-TYPE     92     74    120     74
D564V6, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SOAT1 MUTATED        3      1      4      1      0      1
  SOAT1 WILD-TYPE     49     63     68    103     40     58
D564V7, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             1              63
  CLUS_3             4              68
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SOAT1 MUTATED        9      0      1
  SOAT1 WILD-TYPE    208     75     98
D564V8, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SOAT1 MUTATED        6      1      0
  SOAT1 WILD-TYPE    115    107     72
D564V9, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOAT1 MUTATED        4      0      0      0      3
  SOAT1 WILD-TYPE     84     66     45     55     44
D564V10, multiclass
        clus
vv       SOAT1 MUTATED SOAT1 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(565) Variable = IL7R MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL7R MUTATED        4      9      1      0
  IL7R WILD-TYPE    200    128     46      3
D565V1, multiclass
        clus
vv       IL7R MUTATED IL7R WILD-TYPE
  CLUS_1            4            200
  CLUS_2            9            128
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL7R MUTATED        1      6      1      3      0
  IL7R WILD-TYPE     38     90     43     85     80
D565V2, multiclass
        clus
vv       IL7R MUTATED IL7R WILD-TYPE
  CLUS_1            1             38
  CLUS_2            6             90
  CLUS_3            1             43
  CLUS_4            3             85
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL7R MUTATED        0      5      4      1      3
  IL7R WILD-TYPE     26     74     69     81     55
D565V3, multiclass
        clus
vv       IL7R MUTATED IL7R WILD-TYPE
  CLUS_1            0             26
  CLUS_2            5             74
  CLUS_3            4             69
  CLUS_4            1             81
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL7R MUTATED        2      7      3      1
  IL7R WILD-TYPE    125     44     68     68
D565V4, multiclass
        clus
vv       IL7R MUTATED IL7R WILD-TYPE
  CLUS_1            2            125
  CLUS_2            7             44
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL7R MUTATED        4      0      7      0      2
  IL7R WILD-TYPE     80     85     78     69     45
D565V5, multiclass
        clus
vv       IL7R MUTATED IL7R WILD-TYPE
  CLUS_1            4             80
  CLUS_2            0             85
  CLUS_3            7             78
  CLUS_4            0             69
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL7R MUTATED        1      1      5      6
  IL7R WILD-TYPE     94     73    116     74
D565V6, multiclass
        clus
vv       IL7R MUTATED IL7R WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            5            116
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IL7R MUTATED        3      4      3      1      0      3
  IL7R WILD-TYPE     49     60     69    103     40     56
D565V7, multiclass
        clus
vv       IL7R MUTATED IL7R WILD-TYPE
  CLUS_1            3             49
  CLUS_2            4             60
  CLUS_3            3             69
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            3             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IL7R MUTATED       11      0      3
  IL7R WILD-TYPE    206     75     96
D565V8, multiclass
        clus
vv       IL7R MUTATED IL7R WILD-TYPE
  CLUS_1           11            206
  CLUS_2            0             75
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IL7R MUTATED        5      2      3
  IL7R WILD-TYPE    116    106     69
D565V9, multiclass
        clus
vv       IL7R MUTATED IL7R WILD-TYPE
  CLUS_1            5            116
  CLUS_2            2            106
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL7R MUTATED        3      0      2      1      4
  IL7R WILD-TYPE     85     66     43     54     43
D565V10, multiclass
        clus
vv       IL7R MUTATED IL7R WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            1             54
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(566) Variable = KRT222 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT222 MUTATED        1      7      0      0
  KRT222 WILD-TYPE    203    130     47      3
D566V1, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT222 MUTATED        0      5      0      1      0
  KRT222 WILD-TYPE     39     91     44     87     80
D566V2, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT222 MUTATED        0      1      2      2      1
  KRT222 WILD-TYPE     26     78     71     80     57
D566V3, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              2               71
  CLUS_4              2               80
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT222 MUTATED        1      3      0      2
  KRT222 WILD-TYPE    126     48     71     67
D566V4, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              3               48
  CLUS_3              0               71
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT222 MUTATED        1      1      4      1      0
  KRT222 WILD-TYPE     83     84     81     68     47
D566V5, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KRT222 MUTATED        2      2      1      2
  KRT222 WILD-TYPE     93     72    120     78
D566V6, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KRT222 MUTATED        3      2      0      1      1      1
  KRT222 WILD-TYPE     49     62     72    103     39     58
D566V7, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KRT222 MUTATED        5      2      1
  KRT222 WILD-TYPE    212     73     98
D566V8, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KRT222 MUTATED        4      0      2
  KRT222 WILD-TYPE    117    108     70
D566V9, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KRT222 MUTATED        2      0      1      0      3
  KRT222 WILD-TYPE     86     66     44     55     44
D566V10, multiclass
        clus
vv       KRT222 MUTATED KRT222 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(567) Variable = AP2A2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP2A2 MUTATED        2     10      2      0
  AP2A2 WILD-TYPE    202    127     45      3
D567V1, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            10             127
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP2A2 MUTATED        1      9      1      0      0
  AP2A2 WILD-TYPE     38     87     43     88     80
D567V2, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             9              87
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP2A2 MUTATED        0      4      5      2      2
  AP2A2 WILD-TYPE     26     75     68     80     56
D567V3, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             5              68
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP2A2 MUTATED        4      5      3      1
  AP2A2 WILD-TYPE    123     46     68     68
D567V4, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             5              46
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP2A2 MUTATED        0      5      7      1      1
  AP2A2 WILD-TYPE     84     80     78     68     46
D567V5, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             5              80
  CLUS_3             7              78
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP2A2 MUTATED        3      5      1      5
  AP2A2 WILD-TYPE     92     69    120     75
D567V6, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             5              69
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AP2A2 MUTATED        2      4      3      3      2      0
  AP2A2 WILD-TYPE     50     60     69    101     38     59
D567V7, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             4              60
  CLUS_3             3              69
  CLUS_4             3             101
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP2A2 MUTATED        9      4      1
  AP2A2 WILD-TYPE    208     71     98
D567V8, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             4              71
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP2A2 MUTATED        1      4      2
  AP2A2 WILD-TYPE    120    104     70
D567V9, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             4             104
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP2A2 MUTATED        2      3      1      0      1
  AP2A2 WILD-TYPE     86     63     44     55     46
D567V10, multiclass
        clus
vv       AP2A2 MUTATED AP2A2 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             3              63
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(568) Variable = RUSC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUSC2 MUTATED        3     16      1      0
  RUSC2 WILD-TYPE    201    121     46      3
D568V1, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            16             121
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUSC2 MUTATED        2      9      3      0      2
  RUSC2 WILD-TYPE     37     87     41     88     78
D568V2, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             9              87
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUSC2 MUTATED        2      5      5      1      4
  RUSC2 WILD-TYPE     24     74     68     81     54
D568V3, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             5              74
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUSC2 MUTATED        8      7      2      0
  RUSC2 WILD-TYPE    119     44     69     69
D568V4, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             8             119
  CLUS_2             7              44
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUSC2 MUTATED        2      3      7      4      2
  RUSC2 WILD-TYPE     82     82     78     65     45
D568V5, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             3              82
  CLUS_3             7              78
  CLUS_4             4              65
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUSC2 MUTATED        7      4      2      5
  RUSC2 WILD-TYPE     88     70    119     75
D568V6, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             4              70
  CLUS_3             2             119
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RUSC2 MUTATED        5      6      1      6      1      1
  RUSC2 WILD-TYPE     47     58     71     98     39     58
D568V7, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             6              58
  CLUS_3             1              71
  CLUS_4             6              98
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUSC2 MUTATED       14      4      2
  RUSC2 WILD-TYPE    203     71     97
D568V8, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             4              71
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUSC2 MUTATED        5      2      8
  RUSC2 WILD-TYPE    116    106     64
D568V9, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             2             106
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUSC2 MUTATED        4      4      3      0      4
  RUSC2 WILD-TYPE     84     62     42     55     43
D568V10, multiclass
        clus
vv       RUSC2 MUTATED RUSC2 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             4              62
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(569) Variable = FAM186B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM186B MUTATED        2      9      2      0
  FAM186B WILD-TYPE    202    128     45      3
D569V1, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               2               202
  CLUS_2               9               128
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM186B MUTATED        2      5      0      1      0
  FAM186B WILD-TYPE     37     91     44     87     80
D569V2, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               2                37
  CLUS_2               5                91
  CLUS_3               0                44
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM186B MUTATED        0      5      1      2      3
  FAM186B WILD-TYPE     26     74     72     80     55
D569V3, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               0                26
  CLUS_2               5                74
  CLUS_3               1                72
  CLUS_4               2                80
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM186B MUTATED        2      5      3      1
  FAM186B WILD-TYPE    125     46     68     68
D569V4, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               2               125
  CLUS_2               5                46
  CLUS_3               3                68
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM186B MUTATED        0      0      7      3      2
  FAM186B WILD-TYPE     84     85     78     66     45
D569V5, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               7                78
  CLUS_4               3                66
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM186B MUTATED        5      2      0      5
  FAM186B WILD-TYPE     90     72    121     75
D569V6, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               5                90
  CLUS_2               2                72
  CLUS_3               0               121
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM186B MUTATED        3      6      3      0      1      0
  FAM186B WILD-TYPE     49     58     69    104     39     59
D569V7, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               3                49
  CLUS_2               6                58
  CLUS_3               3                69
  CLUS_4               0               104
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM186B MUTATED       11      1      1
  FAM186B WILD-TYPE    206     74     98
D569V8, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1              11               206
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM186B MUTATED        4      1      3
  FAM186B WILD-TYPE    117    107     69
D569V9, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               4               117
  CLUS_2               1               107
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM186B MUTATED        2      0      0      1      5
  FAM186B WILD-TYPE     86     66     45     54     42
D569V10, multiclass
        clus
vv       FAM186B MUTATED FAM186B WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               1                54
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(570) Variable = MEGF8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEGF8 MUTATED        5     20      4      0
  MEGF8 WILD-TYPE    199    117     43      3
D570V1, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             5             199
  CLUS_2            20             117
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEGF8 MUTATED        1     14      6      1      1
  MEGF8 WILD-TYPE     38     82     38     87     79
D570V2, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             1              38
  CLUS_2            14              82
  CLUS_3             6              38
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEGF8 MUTATED        1      8      8      1      4
  MEGF8 WILD-TYPE     25     71     65     81     54
D570V3, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             8              71
  CLUS_3             8              65
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEGF8 MUTATED        5      9      6      2
  MEGF8 WILD-TYPE    122     42     65     67
D570V4, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             9              42
  CLUS_3             6              65
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEGF8 MUTATED        3      6     14      4      2
  MEGF8 WILD-TYPE     81     79     71     65     45
D570V5, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             6              79
  CLUS_3            14              71
  CLUS_4             4              65
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEGF8 MUTATED        7      5      3     14
  MEGF8 WILD-TYPE     88     69    118     66
D570V6, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             5              69
  CLUS_3             3             118
  CLUS_4            14              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MEGF8 MUTATED        8     10      6      2      1      3
  MEGF8 WILD-TYPE     44     54     66    102     39     56
D570V7, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             8              44
  CLUS_2            10              54
  CLUS_3             6              66
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEGF8 MUTATED       24      2      4
  MEGF8 WILD-TYPE    193     73     95
D570V8, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1            24             193
  CLUS_2             2              73
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEGF8 MUTATED       10      2      6
  MEGF8 WILD-TYPE    111    106     66
D570V9, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1            10             111
  CLUS_2             2             106
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEGF8 MUTATED        4      2      4      1      7
  MEGF8 WILD-TYPE     84     64     41     54     40
D570V10, multiclass
        clus
vv       MEGF8 MUTATED MEGF8 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             2              64
  CLUS_3             4              41
  CLUS_4             1              54
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(571) Variable = CTSD MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSD MUTATED        2      4      2      0
  CTSD WILD-TYPE    202    133     45      3
D571V1, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            2            202
  CLUS_2            4            133
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSD MUTATED        0      6      0      2      0
  CTSD WILD-TYPE     39     90     44     86     80
D571V2, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            0             39
  CLUS_2            6             90
  CLUS_3            0             44
  CLUS_4            2             86
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSD MUTATED        0      1      2      1      3
  CTSD WILD-TYPE     26     78     71     81     55
D571V3, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSD MUTATED        1      4      1      1
  CTSD WILD-TYPE    126     47     70     68
D571V4, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            1            126
  CLUS_2            4             47
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSD MUTATED        1      0      5      0      2
  CTSD WILD-TYPE     83     85     80     69     45
D571V5, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            1             83
  CLUS_2            0             85
  CLUS_3            5             80
  CLUS_4            0             69
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSD MUTATED        2      1      0      5
  CTSD WILD-TYPE     93     73    121     75
D571V6, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            2             93
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTSD MUTATED        1      2      3      1      0      1
  CTSD WILD-TYPE     51     62     69    103     40     58
D571V7, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            1             51
  CLUS_2            2             62
  CLUS_3            3             69
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSD MUTATED        6      0      2
  CTSD WILD-TYPE    211     75     97
D571V8, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            6            211
  CLUS_2            0             75
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSD MUTATED        2      1      5
  CTSD WILD-TYPE    119    107     67
D571V9, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            2            119
  CLUS_2            1            107
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSD MUTATED        0      0      2      1      5
  CTSD WILD-TYPE     88     66     43     54     42
D571V10, multiclass
        clus
vv       CTSD MUTATED CTSD WILD-TYPE
  CLUS_1            0             88
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            1             54
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(572) Variable = UBQLN2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBQLN2 MUTATED        2      5      0      0
  UBQLN2 WILD-TYPE    202    132     47      3
D572V1, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBQLN2 MUTATED        0      2      1      2      1
  UBQLN2 WILD-TYPE     39     94     43     86     79
D572V2, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              2               94
  CLUS_3              1               43
  CLUS_4              2               86
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBQLN2 MUTATED        0      4      1      0      1
  UBQLN2 WILD-TYPE     26     75     72     82     57
D572V3, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBQLN2 MUTATED        2      2      2      0
  UBQLN2 WILD-TYPE    125     49     69     69
D572V4, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              2               49
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBQLN2 MUTATED        1      1      3      2      0
  UBQLN2 WILD-TYPE     83     84     82     67     47
D572V5, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              3               82
  CLUS_4              2               67
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBQLN2 MUTATED        4      0      2      1
  UBQLN2 WILD-TYPE     91     74    119     79
D572V6, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              0               74
  CLUS_3              2              119
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UBQLN2 MUTATED        2      3      1      0      0      1
  UBQLN2 WILD-TYPE     50     61     71    104     40     58
D572V7, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UBQLN2 MUTATED        5      1      1
  UBQLN2 WILD-TYPE    212     74     98
D572V8, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UBQLN2 MUTATED        3      0      2
  UBQLN2 WILD-TYPE    118    108     70
D572V9, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBQLN2 MUTATED        1      0      2      1      1
  UBQLN2 WILD-TYPE     87     66     43     54     46
D572V10, multiclass
        clus
vv       UBQLN2 MUTATED UBQLN2 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(573) Variable = FNDC4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FNDC4 MUTATED        1      4      0      0
  FNDC4 WILD-TYPE    203    133     47      3
D573V1, multiclass
        clus
vv       FNDC4 MUTATED FNDC4 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             4             133
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FNDC4 MUTATED        0      4      1      0      1
  FNDC4 WILD-TYPE     39     92     43     88     79
D573V2, multiclass
        clus
vv       FNDC4 MUTATED FNDC4 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FNDC4 MUTATED        0      3      1      0      1
  FNDC4 WILD-TYPE     26     76     72     82     57
D573V3, multiclass
        clus
vv       FNDC4 MUTATED FNDC4 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FNDC4 MUTATED        1      2      2      0
  FNDC4 WILD-TYPE    126     49     69     69
D573V4, multiclass
        clus
vv       FNDC4 MUTATED FNDC4 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             2              49
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FNDC4 MUTATED        0      1      1      1      2
  FNDC4 WILD-TYPE     84     84     84     68     45
D573V5, multiclass
        clus
vv       FNDC4 MUTATED FNDC4 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             1              84
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FNDC4 MUTATED        1      0      0      4
  FNDC4 WILD-TYPE     94     74    121     76
D573V6, multiclass
        clus
vv       FNDC4 MUTATED FNDC4 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FNDC4 MUTATED        3      1      0      1      1      0
  FNDC4 WILD-TYPE     49     63     72    103     39     59
D573V7, multiclass
        clus
vv       FNDC4 MUTATED FNDC4 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             1              63
  CLUS_3             0              72
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FNDC4 MUTATED        6      0      0
  FNDC4 WILD-TYPE    211     75     99
D573V8, multiclass
        clus
vv       FNDC4 MUTATED FNDC4 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FNDC4 MUTATED        4      1      1
  FNDC4 WILD-TYPE    117    107     71
D573V9, multiclass
        clus
vv       FNDC4 MUTATED FNDC4 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FNDC4 MUTATED        3      0      1      0      2
  FNDC4 WILD-TYPE     85     66     44     55     45
D573V10, multiclass
        clus
vv       FNDC4 MUTATED FNDC4 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(574) Variable = LIPH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIPH MUTATED        2      4      1      0
  LIPH WILD-TYPE    202    133     46      3
D574V1, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            2            202
  CLUS_2            4            133
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LIPH MUTATED        3      1      2      1      0
  LIPH WILD-TYPE     36     95     42     87     80
D574V2, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            3             36
  CLUS_2            1             95
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LIPH MUTATED        1      2      1      0      2
  LIPH WILD-TYPE     25     77     72     82     56
D574V3, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            1             25
  CLUS_2            2             77
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIPH MUTATED        2      2      1      1
  LIPH WILD-TYPE    125     49     70     68
D574V4, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            2            125
  CLUS_2            2             49
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LIPH MUTATED        0      1      3      2      1
  LIPH WILD-TYPE     84     84     82     67     46
D574V5, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            3             82
  CLUS_4            2             67
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIPH MUTATED        2      2      1      2
  LIPH WILD-TYPE     93     72    120     78
D574V6, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            2             93
  CLUS_2            2             72
  CLUS_3            1            120
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LIPH MUTATED        0      3      2      1      1      0
  LIPH WILD-TYPE     52     61     70    103     39     59
D574V7, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            0             52
  CLUS_2            3             61
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LIPH MUTATED        6      0      1
  LIPH WILD-TYPE    211     75     98
D574V8, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            6            211
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LIPH MUTATED        3      1      3
  LIPH WILD-TYPE    118    107     69
D574V9, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            3            118
  CLUS_2            1            107
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LIPH MUTATED        3      0      1      0      3
  LIPH WILD-TYPE     85     66     44     55     44
D574V10, multiclass
        clus
vv       LIPH MUTATED LIPH WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(575) Variable = FBXO43 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO43 MUTATED        1      8      1      0
  FBXO43 WILD-TYPE    203    129     46      3
D575V1, multiclass
        clus
vv       FBXO43 MUTATED FBXO43 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              8              129
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO43 MUTATED        0      6      0      1      1
  FBXO43 WILD-TYPE     39     90     44     87     79
D575V2, multiclass
        clus
vv       FBXO43 MUTATED FBXO43 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              6               90
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO43 MUTATED        1      2      2      0      3
  FBXO43 WILD-TYPE     25     77     71     82     55
D575V3, multiclass
        clus
vv       FBXO43 MUTATED FBXO43 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               77
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO43 MUTATED        4      4      0      0
  FBXO43 WILD-TYPE    123     47     71     69
D575V4, multiclass
        clus
vv       FBXO43 MUTATED FBXO43 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              4               47
  CLUS_3              0               71
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO43 MUTATED        0      1      3      2      3
  FBXO43 WILD-TYPE     84     84     82     67     44
D575V5, multiclass
        clus
vv       FBXO43 MUTATED FBXO43 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              3               82
  CLUS_4              2               67
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO43 MUTATED        5      0      1      3
  FBXO43 WILD-TYPE     90     74    120     77
D575V6, multiclass
        clus
vv       FBXO43 MUTATED FBXO43 WILD-TYPE
  CLUS_1              5               90
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXO43 MUTATED        3      4      2      0      1      0
  FBXO43 WILD-TYPE     49     60     70    104     39     59
D575V7, multiclass
        clus
vv       FBXO43 MUTATED FBXO43 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              4               60
  CLUS_3              2               70
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO43 MUTATED        9      0      1
  FBXO43 WILD-TYPE    208     75     98
D575V8, multiclass
        clus
vv       FBXO43 MUTATED FBXO43 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO43 MUTATED        4      1      2
  FBXO43 WILD-TYPE    117    107     70
D575V9, multiclass
        clus
vv       FBXO43 MUTATED FBXO43 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO43 MUTATED        1      0      2      0      4
  FBXO43 WILD-TYPE     87     66     43     55     43
D575V10, multiclass
        clus
vv       FBXO43 MUTATED FBXO43 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(576) Variable = HOXB7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXB7 MUTATED        1      5      0      0
  HOXB7 WILD-TYPE    203    132     47      3
D576V1, multiclass
        clus
vv       HOXB7 MUTATED HOXB7 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             5             132
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXB7 MUTATED        1      4      1      0      0
  HOXB7 WILD-TYPE     38     92     43     88     80
D576V2, multiclass
        clus
vv       HOXB7 MUTATED HOXB7 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXB7 MUTATED        1      2      2      0      0
  HOXB7 WILD-TYPE     25     77     71     82     58
D576V3, multiclass
        clus
vv       HOXB7 MUTATED HOXB7 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXB7 MUTATED        2      2      1      0
  HOXB7 WILD-TYPE    125     49     70     69
D576V4, multiclass
        clus
vv       HOXB7 MUTATED HOXB7 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             2              49
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXB7 MUTATED        0      2      2      1      1
  HOXB7 WILD-TYPE     84     83     83     68     46
D576V5, multiclass
        clus
vv       HOXB7 MUTATED HOXB7 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             2              83
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXB7 MUTATED        2      0      1      3
  HOXB7 WILD-TYPE     93     74    120     77
D576V6, multiclass
        clus
vv       HOXB7 MUTATED HOXB7 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HOXB7 MUTATED        2      0      1      1      2      0
  HOXB7 WILD-TYPE     50     64     71    103     38     59
D576V7, multiclass
        clus
vv       HOXB7 MUTATED HOXB7 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             0              64
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOXB7 MUTATED        5      0      1
  HOXB7 WILD-TYPE    212     75     98
D576V8, multiclass
        clus
vv       HOXB7 MUTATED HOXB7 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOXB7 MUTATED        3      2      0
  HOXB7 WILD-TYPE    118    106     72
D576V9, multiclass
        clus
vv       HOXB7 MUTATED HOXB7 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXB7 MUTATED        2      0      0      0      3
  HOXB7 WILD-TYPE     86     66     45     55     44
D576V10, multiclass
        clus
vv       HOXB7 MUTATED HOXB7 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(577) Variable = AGAP6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP6 MUTATED        1      9      0      0
  AGAP6 WILD-TYPE    203    128     47      3
D577V1, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             9             128
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGAP6 MUTATED        0      7      0      1      1
  AGAP6 WILD-TYPE     39     89     44     87     79
D577V2, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              89
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGAP6 MUTATED        1      3      2      0      1
  AGAP6 WILD-TYPE     25     76     71     82     57
D577V3, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP6 MUTATED        2      3      2      0
  AGAP6 WILD-TYPE    125     48     69     69
D577V4, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             3              48
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGAP6 MUTATED        1      0      3      3      2
  AGAP6 WILD-TYPE     83     85     82     66     45
D577V5, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             3              66
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP6 MUTATED        5      0      1      3
  AGAP6 WILD-TYPE     90     74    120     77
D577V6, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AGAP6 MUTATED        2      2      5      0      0      1
  AGAP6 WILD-TYPE     50     62     67    104     40     58
D577V7, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             5              67
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP6 MUTATED        9      0      1
  AGAP6 WILD-TYPE    208     75     98
D577V8, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP6 MUTATED        5      0      4
  AGAP6 WILD-TYPE    116    108     68
D577V9, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGAP6 MUTATED        2      0      2      1      4
  AGAP6 WILD-TYPE     86     66     43     54     43
D577V10, multiclass
        clus
vv       AGAP6 MUTATED AGAP6 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(578) Variable = GPR160 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR160 MUTATED        1      6      1      0
  GPR160 WILD-TYPE    203    131     46      3
D578V1, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              6              131
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR160 MUTATED        2      1      1      1      0
  GPR160 WILD-TYPE     37     95     43     87     80
D578V2, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              1               95
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR160 MUTATED        0      4      3      0      1
  GPR160 WILD-TYPE     26     75     70     82     57
D578V3, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR160 MUTATED        0      5      3      0
  GPR160 WILD-TYPE    127     46     68     69
D578V4, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              5               46
  CLUS_3              3               68
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR160 MUTATED        0      2      2      1      1
  GPR160 WILD-TYPE     84     83     83     68     46
D578V5, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              2               83
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR160 MUTATED        3      1      1      1
  GPR160 WILD-TYPE     92     73    120     79
D578V6, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR160 MUTATED        1      4      0      1      1      1
  GPR160 WILD-TYPE     51     60     72    103     39     58
D578V7, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              4               60
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR160 MUTATED        6      1      1
  GPR160 WILD-TYPE    211     74     98
D578V8, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR160 MUTATED        3      0      2
  GPR160 WILD-TYPE    118    108     70
D578V9, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR160 MUTATED        1      1      1      1      1
  GPR160 WILD-TYPE     87     65     44     54     46
D578V10, multiclass
        clus
vv       GPR160 MUTATED GPR160 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(579) Variable = FAM46D MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM46D MUTATED        3      6      1      0
  FAM46D WILD-TYPE    201    131     46      3
D579V1, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              3              201
  CLUS_2              6              131
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM46D MUTATED        1      5      0      1      3
  FAM46D WILD-TYPE     38     91     44     87     77
D579V2, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM46D MUTATED        1      4      2      0      2
  FAM46D WILD-TYPE     25     75     71     82     56
D579V3, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              1               25
  CLUS_2              4               75
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM46D MUTATED        2      2      4      1
  FAM46D WILD-TYPE    125     49     67     68
D579V4, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              2              125
  CLUS_2              2               49
  CLUS_3              4               67
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM46D MUTATED        2      2      3      0      2
  FAM46D WILD-TYPE     82     83     82     69     45
D579V5, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              2               82
  CLUS_2              2               83
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM46D MUTATED        0      3      3      3
  FAM46D WILD-TYPE     95     71    118     77
D579V6, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              0               95
  CLUS_2              3               71
  CLUS_3              3              118
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM46D MUTATED        1      3      1      2      1      2
  FAM46D WILD-TYPE     51     61     71    102     39     57
D579V7, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              1               51
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM46D MUTATED        5      3      2
  FAM46D WILD-TYPE    212     72     97
D579V8, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              5              212
  CLUS_2              3               72
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM46D MUTATED        2      3      5
  FAM46D WILD-TYPE    119    105     67
D579V9, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              2              119
  CLUS_2              3              105
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM46D MUTATED        0      3      2      2      3
  FAM46D WILD-TYPE     88     63     43     53     44
D579V10, multiclass
        clus
vv       FAM46D MUTATED FAM46D WILD-TYPE
  CLUS_1              0               88
  CLUS_2              3               63
  CLUS_3              2               43
  CLUS_4              2               53
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(580) Variable = CSF3R MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSF3R MUTATED        2      8      2      0
  CSF3R WILD-TYPE    202    129     45      3
D580V1, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             2             202
  CLUS_2             8             129
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSF3R MUTATED        1      7      2      0      0
  CSF3R WILD-TYPE     38     89     42     88     80
D580V2, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             1              38
  CLUS_2             7              89
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSF3R MUTATED        0      3      5      0      3
  CSF3R WILD-TYPE     26     76     68     82     55
D580V3, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             5              68
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSF3R MUTATED        3      4      2      2
  CSF3R WILD-TYPE    124     47     69     67
D580V4, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             3             124
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSF3R MUTATED        0      2      5      1      4
  CSF3R WILD-TYPE     84     83     80     68     43
D580V5, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSF3R MUTATED        3      2      0      7
  CSF3R WILD-TYPE     92     72    121     73
D580V6, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSF3R MUTATED        3      6      1      1      1      0
  CSF3R WILD-TYPE     49     58     71    103     39     59
D580V7, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             3              49
  CLUS_2             6              58
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSF3R MUTATED        9      1      2
  CSF3R WILD-TYPE    208     74     97
D580V8, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             9             208
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CSF3R MUTATED        4      1      4
  CSF3R WILD-TYPE    117    107     68
D580V9, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSF3R MUTATED        3      1      2      0      3
  CSF3R WILD-TYPE     85     65     43     55     44
D580V10, multiclass
        clus
vv       CSF3R MUTATED CSF3R WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(581) Variable = PRMT3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT3 MUTATED        1      5      3      0
  PRMT3 WILD-TYPE    203    132     44      3
D581V1, multiclass
        clus
vv       PRMT3 MUTATED PRMT3 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             5             132
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRMT3 MUTATED        3      3      1      1      0
  PRMT3 WILD-TYPE     36     93     43     87     80
D581V2, multiclass
        clus
vv       PRMT3 MUTATED PRMT3 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRMT3 MUTATED        0      3      2      1      2
  PRMT3 WILD-TYPE     26     76     71     81     56
D581V3, multiclass
        clus
vv       PRMT3 MUTATED PRMT3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT3 MUTATED        3      1      3      1
  PRMT3 WILD-TYPE    124     50     68     68
D581V4, multiclass
        clus
vv       PRMT3 MUTATED PRMT3 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             1              50
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRMT3 MUTATED        0      0      6      1      1
  PRMT3 WILD-TYPE     84     85     79     68     46
D581V5, multiclass
        clus
vv       PRMT3 MUTATED PRMT3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT3 MUTATED        1      1      1      5
  PRMT3 WILD-TYPE     94     73    120     75
D581V6, multiclass
        clus
vv       PRMT3 MUTATED PRMT3 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRMT3 MUTATED        1      3      3      1      1      0
  PRMT3 WILD-TYPE     51     61     69    103     39     59
D581V7, multiclass
        clus
vv       PRMT3 MUTATED PRMT3 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             3              61
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRMT3 MUTATED        8      1      0
  PRMT3 WILD-TYPE    209     74     99
D581V8, multiclass
        clus
vv       PRMT3 MUTATED PRMT3 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRMT3 MUTATED        2      1      4
  PRMT3 WILD-TYPE    119    107     68
D581V9, multiclass
        clus
vv       PRMT3 MUTATED PRMT3 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRMT3 MUTATED        4      0      1      0      2
  PRMT3 WILD-TYPE     84     66     44     55     45
D581V10, multiclass
        clus
vv       PRMT3 MUTATED PRMT3 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(582) Variable = FGF7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGF7 MUTATED        0      5      0      0
  FGF7 WILD-TYPE    204    132     47      3
D582V1, multiclass
        clus
vv       FGF7 MUTATED FGF7 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            5            132
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF7 MUTATED        1      1      2      0      0
  FGF7 WILD-TYPE     38     95     42     88     80
D582V2, multiclass
        clus
vv       FGF7 MUTATED FGF7 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            1             95
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF7 MUTATED        1      1      1      0      1
  FGF7 WILD-TYPE     25     78     72     82     57
D582V3, multiclass
        clus
vv       FGF7 MUTATED FGF7 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             78
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGF7 MUTATED        2      1      1      0
  FGF7 WILD-TYPE    125     50     70     69
D582V4, multiclass
        clus
vv       FGF7 MUTATED FGF7 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            1             50
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF7 MUTATED        1      0      3      0      1
  FGF7 WILD-TYPE     83     85     82     69     46
D582V5, multiclass
        clus
vv       FGF7 MUTATED FGF7 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            0             85
  CLUS_3            3             82
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGF7 MUTATED        2      0      0      3
  FGF7 WILD-TYPE     93     74    121     77
D582V6, multiclass
        clus
vv       FGF7 MUTATED FGF7 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            0             74
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FGF7 MUTATED        2      2      0      0      0      1
  FGF7 WILD-TYPE     50     62     72    104     40     58
D582V7, multiclass
        clus
vv       FGF7 MUTATED FGF7 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            2             62
  CLUS_3            0             72
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGF7 MUTATED        4      0      1
  FGF7 WILD-TYPE    213     75     98
D582V8, multiclass
        clus
vv       FGF7 MUTATED FGF7 WILD-TYPE
  CLUS_1            4            213
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FGF7 MUTATED        3      0      1
  FGF7 WILD-TYPE    118    108     71
D582V9, multiclass
        clus
vv       FGF7 MUTATED FGF7 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF7 MUTATED        2      0      1      0      1
  FGF7 WILD-TYPE     86     66     44     55     46
D582V10, multiclass
        clus
vv       FGF7 MUTATED FGF7 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(583) Variable = AGAP5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP5 MUTATED        2      5      0      0
  AGAP5 WILD-TYPE    202    132     47      3
D583V1, multiclass
        clus
vv       AGAP5 MUTATED AGAP5 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             5             132
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGAP5 MUTATED        1      5      0      0      1
  AGAP5 WILD-TYPE     38     91     44     88     79
D583V2, multiclass
        clus
vv       AGAP5 MUTATED AGAP5 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGAP5 MUTATED        0      2      1      1      1
  AGAP5 WILD-TYPE     26     77     72     81     57
D583V3, multiclass
        clus
vv       AGAP5 MUTATED AGAP5 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP5 MUTATED        1      2      1      1
  AGAP5 WILD-TYPE    126     49     70     68
D583V4, multiclass
        clus
vv       AGAP5 MUTATED AGAP5 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             2              49
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGAP5 MUTATED        0      0      6      2      0
  AGAP5 WILD-TYPE     84     85     79     67     47
D583V5, multiclass
        clus
vv       AGAP5 MUTATED AGAP5 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             6              79
  CLUS_4             2              67
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AGAP5 MUTATED        3      1      0      4
  AGAP5 WILD-TYPE     92     73    121     76
D583V6, multiclass
        clus
vv       AGAP5 MUTATED AGAP5 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AGAP5 MUTATED        4      1      1      1      1      0
  AGAP5 WILD-TYPE     48     63     71    103     39     59
D583V7, multiclass
        clus
vv       AGAP5 MUTATED AGAP5 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             1              63
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP5 MUTATED        7      1      0
  AGAP5 WILD-TYPE    210     74     99
D583V8, multiclass
        clus
vv       AGAP5 MUTATED AGAP5 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AGAP5 MUTATED        6      0      1
  AGAP5 WILD-TYPE    115    108     71
D583V9, multiclass
        clus
vv       AGAP5 MUTATED AGAP5 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             0             108
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AGAP5 MUTATED        4      0      0      0      3
  AGAP5 WILD-TYPE     84     66     45     55     44
D583V10, multiclass
        clus
vv       AGAP5 MUTATED AGAP5 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(584) Variable = STEAP2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STEAP2 MUTATED        2      4      0      0
  STEAP2 WILD-TYPE    202    133     47      3
D584V1, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              4              133
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STEAP2 MUTATED        1      4      0      0      0
  STEAP2 WILD-TYPE     38     92     44     88     80
D584V2, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               92
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STEAP2 MUTATED        0      1      2      0      2
  STEAP2 WILD-TYPE     26     78     71     82     56
D584V3, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STEAP2 MUTATED        0      4      1      0
  STEAP2 WILD-TYPE    127     47     70     69
D584V4, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              4               47
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STEAP2 MUTATED        0      0      5      0      1
  STEAP2 WILD-TYPE     84     85     80     69     46
D584V5, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              5               80
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STEAP2 MUTATED        1      0      0      5
  STEAP2 WILD-TYPE     94     74    121     75
D584V6, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              0               74
  CLUS_3              0              121
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STEAP2 MUTATED        2      3      1      0      0      0
  STEAP2 WILD-TYPE     50     61     71    104     40     59
D584V7, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STEAP2 MUTATED        6      0      0
  STEAP2 WILD-TYPE    211     75     99
D584V8, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  STEAP2 MUTATED        2      0      2
  STEAP2 WILD-TYPE    119    108     70
D584V9, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STEAP2 MUTATED        1      0      1      0      2
  STEAP2 WILD-TYPE     87     66     44     55     45
D584V10, multiclass
        clus
vv       STEAP2 MUTATED STEAP2 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(585) Variable = CDKL3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKL3 MUTATED        0      6      1      0
  CDKL3 WILD-TYPE    204    131     46      3
D585V1, multiclass
        clus
vv       CDKL3 MUTATED CDKL3 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             6             131
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKL3 MUTATED        0      3      1      0      2
  CDKL3 WILD-TYPE     39     93     43     88     78
D585V2, multiclass
        clus
vv       CDKL3 MUTATED CDKL3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKL3 MUTATED        1      3      1      1      1
  CDKL3 WILD-TYPE     25     76     72     81     57
D585V3, multiclass
        clus
vv       CDKL3 MUTATED CDKL3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKL3 MUTATED        1      4      1      1
  CDKL3 WILD-TYPE    126     47     70     68
D585V4, multiclass
        clus
vv       CDKL3 MUTATED CDKL3 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKL3 MUTATED        0      0      5      0      1
  CDKL3 WILD-TYPE     84     85     80     69     46
D585V5, multiclass
        clus
vv       CDKL3 MUTATED CDKL3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKL3 MUTATED        0      1      3      2
  CDKL3 WILD-TYPE     95     73    118     78
D585V6, multiclass
        clus
vv       CDKL3 MUTATED CDKL3 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             1              73
  CLUS_3             3             118
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDKL3 MUTATED        1      4      1      0      1      0
  CDKL3 WILD-TYPE     51     60     71    104     39     59
D585V7, multiclass
        clus
vv       CDKL3 MUTATED CDKL3 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             4              60
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDKL3 MUTATED        5      2      0
  CDKL3 WILD-TYPE    212     73     99
D585V8, multiclass
        clus
vv       CDKL3 MUTATED CDKL3 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             2              73
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDKL3 MUTATED        1      0      4
  CDKL3 WILD-TYPE    120    108     68
D585V9, multiclass
        clus
vv       CDKL3 MUTATED CDKL3 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKL3 MUTATED        1      0      3      0      1
  CDKL3 WILD-TYPE     87     66     42     55     46
D585V10, multiclass
        clus
vv       CDKL3 MUTATED CDKL3 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(586) Variable = FAM113A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM113A MUTATED        1      8      0      0
  FAM113A WILD-TYPE    203    129     47      3
D586V1, multiclass
        clus
vv       FAM113A MUTATED FAM113A WILD-TYPE
  CLUS_1               1               203
  CLUS_2               8               129
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM113A MUTATED        0      2      1      0      2
  FAM113A WILD-TYPE     39     94     43     88     78
D586V2, multiclass
        clus
vv       FAM113A MUTATED FAM113A WILD-TYPE
  CLUS_1               0                39
  CLUS_2               2                94
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM113A MUTATED        2      2      1      1      2
  FAM113A WILD-TYPE     24     77     72     81     56
D586V3, multiclass
        clus
vv       FAM113A MUTATED FAM113A WILD-TYPE
  CLUS_1               2                24
  CLUS_2               2                77
  CLUS_3               1                72
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM113A MUTATED        2      3      1      2
  FAM113A WILD-TYPE    125     48     70     67
D586V4, multiclass
        clus
vv       FAM113A MUTATED FAM113A WILD-TYPE
  CLUS_1               2               125
  CLUS_2               3                48
  CLUS_3               1                70
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM113A MUTATED        1      2      3      2      0
  FAM113A WILD-TYPE     83     83     82     67     47
D586V5, multiclass
        clus
vv       FAM113A MUTATED FAM113A WILD-TYPE
  CLUS_1               1                83
  CLUS_2               2                83
  CLUS_3               3                82
  CLUS_4               2                67
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM113A MUTATED        4      3      1      0
  FAM113A WILD-TYPE     91     71    120     80
D586V6, multiclass
        clus
vv       FAM113A MUTATED FAM113A WILD-TYPE
  CLUS_1               4                91
  CLUS_2               3                71
  CLUS_3               1               120
  CLUS_4               0                80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM113A MUTATED        1      6      0      1      0      1
  FAM113A WILD-TYPE     51     58     72    103     40     58
D586V7, multiclass
        clus
vv       FAM113A MUTATED FAM113A WILD-TYPE
  CLUS_1               1                51
  CLUS_2               6                58
  CLUS_3               0                72
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM113A MUTATED        7      1      1
  FAM113A WILD-TYPE    210     74     98
D586V8, multiclass
        clus
vv       FAM113A MUTATED FAM113A WILD-TYPE
  CLUS_1               7               210
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM113A MUTATED        1      1      3
  FAM113A WILD-TYPE    120    107     69
D586V9, multiclass
        clus
vv       FAM113A MUTATED FAM113A WILD-TYPE
  CLUS_1               1               120
  CLUS_2               1               107
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM113A MUTATED        1      1      2      0      1
  FAM113A WILD-TYPE     87     65     43     55     46
D586V10, multiclass
        clus
vv       FAM113A MUTATED FAM113A WILD-TYPE
  CLUS_1               1                87
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(587) Variable = ZNF207 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF207 MUTATED        1      7      0      0
  ZNF207 WILD-TYPE    203    130     47      3
D587V1, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF207 MUTATED        1      5      1      1      0
  ZNF207 WILD-TYPE     38     91     43     87     80
D587V2, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF207 MUTATED        0      0      4      1      2
  ZNF207 WILD-TYPE     26     79     69     81     56
D587V3, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               79
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF207 MUTATED        0      6      0      1
  ZNF207 WILD-TYPE    127     45     71     68
D587V4, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              6               45
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF207 MUTATED        0      0      6      0      2
  ZNF207 WILD-TYPE     84     85     79     69     45
D587V5, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              6               79
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF207 MUTATED        1      1      0      6
  ZNF207 WILD-TYPE     94     73    121     74
D587V6, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF207 MUTATED        3      2      2      1      0      0
  ZNF207 WILD-TYPE     49     62     70    103     40     59
D587V7, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              2               62
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF207 MUTATED        6      0      2
  ZNF207 WILD-TYPE    211     75     97
D587V8, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              0               75
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF207 MUTATED        4      1      1
  ZNF207 WILD-TYPE    117    107     71
D587V9, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              1              107
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF207 MUTATED        3      0      1      1      1
  ZNF207 WILD-TYPE     85     66     44     54     46
D587V10, multiclass
        clus
vv       ZNF207 MUTATED ZNF207 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(588) Variable = ICAM3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICAM3 MUTATED        1      3      0      0
  ICAM3 WILD-TYPE    203    134     47      3
D588V1, multiclass
        clus
vv       ICAM3 MUTATED ICAM3 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             3             134
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ICAM3 MUTATED        0      1      0      0      0
  ICAM3 WILD-TYPE     39     95     44     88     80
D588V2, multiclass
[1] "Remove cluster labels:" "ICAM3 MUTATED"         
clus
  ICAM3 MUTATED ICAM3 WILD-TYPE 
              1             346 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8060 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8081 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J5      TCGA-BR-A4J6 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4437      TCGA-CG-4441 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-F1-A72C 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-FP-A4BF      TCGA-FP-A8CX 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-FP-A9TM      TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7133 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-HF-7134      TCGA-HF-7136      TCGA-HJ-7597      TCGA-HU-8238 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8244      TCGA-HU-8249      TCGA-HU-8602 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4G2 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G6      TCGA-HU-A4G8      TCGA-HU-A4G9 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-HU-A4GJ      TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-HU-A4H0      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-IN-8663      TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-IN-A6RN      TCGA-IN-A6RO      TCGA-IN-A6RP      TCGA-IN-A6RR 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-KB-A6F7      TCGA-KB-A93G      TCGA-KB-A93J      TCGA-MX-A5UG 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-MX-A5UJ      TCGA-MX-A663      TCGA-MX-A666      TCGA-R5-A7O7 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-R5-A7ZE      TCGA-R5-A7ZF      TCGA-R5-A7ZI      TCGA-R5-A7ZR 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-R5-A804      TCGA-R5-A805      TCGA-RD-A7BS      TCGA-RD-A7BT 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV      TCGA-RD-A8MW 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N2      TCGA-RD-A8N4 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-RD-A8N5      TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-VQ-A8DV      TCGA-VQ-A8DZ      TCGA-VQ-A8E2      TCGA-VQ-A8E7 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE      TCGA-VQ-A8PK 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q      TCGA-VQ-A91U 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T      TCGA-VQ-AA64 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6J 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
     TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"ICAM3 WILD-TYPE" "ICAM3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ICAM3 MUTATED        2      0      1      1      0
  ICAM3 WILD-TYPE     24     79     72     81     58
D588V3, multiclass
        clus
vv       ICAM3 MUTATED ICAM3 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             0              79
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICAM3 MUTATED        2      1      0      1
  ICAM3 WILD-TYPE    125     50     71     68
D588V4, multiclass
        clus
vv       ICAM3 MUTATED ICAM3 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             1              50
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ICAM3 MUTATED        1      1      1      1      0
  ICAM3 WILD-TYPE     83     84     84     68     47
D588V5, multiclass
        clus
vv       ICAM3 MUTATED ICAM3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             1              84
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ICAM3 MUTATED        2      1      0      1
  ICAM3 WILD-TYPE     93     73    121     79
D588V6, multiclass
        clus
vv       ICAM3 MUTATED ICAM3 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ICAM3 MUTATED        1      2      0      0      0      1
  ICAM3 WILD-TYPE     51     62     72    104     40     58
D588V7, multiclass
        clus
vv       ICAM3 MUTATED ICAM3 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             2              62
  CLUS_3             0              72
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ICAM3 MUTATED        2      0      2
  ICAM3 WILD-TYPE    215     75     97
D588V8, multiclass
        clus
vv       ICAM3 MUTATED ICAM3 WILD-TYPE
  CLUS_1             2             215
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ICAM3 MUTATED        0      0      0
  ICAM3 WILD-TYPE    121    108     72
D588V9, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ICAM3 MUTATED        0      0      0      0      0
  ICAM3 WILD-TYPE     88     66     45     55     47
D588V10, multiclass

Clustering(589) Variable = MKL1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKL1 MUTATED        2     11      1      1
  MKL1 WILD-TYPE    202    126     46      2
D589V1, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            2            202
  CLUS_2           11            126
  CLUS_3            1             46
  CLUS_4            1              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKL1 MUTATED        2      7      1      1      1
  MKL1 WILD-TYPE     37     89     43     87     79
D589V2, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            7             89
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKL1 MUTATED        1      4      3      0      4
  MKL1 WILD-TYPE     25     75     70     82     54
D589V3, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             75
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKL1 MUTATED        3      6      3      0
  MKL1 WILD-TYPE    124     45     68     69
D589V4, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            6             45
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKL1 MUTATED        2      2      5      3      1
  MKL1 WILD-TYPE     82     83     80     66     46
D589V5, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            2             83
  CLUS_3            5             80
  CLUS_4            3             66
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MKL1 MUTATED        4      1      3      5
  MKL1 WILD-TYPE     91     73    118     75
D589V6, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            1             73
  CLUS_3            3            118
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MKL1 MUTATED        5      4      2      2      0      2
  MKL1 WILD-TYPE     47     60     70    102     40     57
D589V7, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            5             47
  CLUS_2            4             60
  CLUS_3            2             70
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MKL1 MUTATED        9      3      3
  MKL1 WILD-TYPE    208     72     96
D589V8, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            9            208
  CLUS_2            3             72
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MKL1 MUTATED        6      2      3
  MKL1 WILD-TYPE    115    106     69
D589V9, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            6            115
  CLUS_2            2            106
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MKL1 MUTATED        3      2      2      1      3
  MKL1 WILD-TYPE     85     64     43     54     44
D589V10, multiclass
        clus
vv       MKL1 MUTATED MKL1 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            2             64
  CLUS_3            2             43
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(590) Variable = HSP90AA1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AA1 MUTATED        3      8      1      0
  HSP90AA1 WILD-TYPE    201    129     46      3
D590V1, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                3                201
  CLUS_2                8                129
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90AA1 MUTATED        1      8      2      1      0
  HSP90AA1 WILD-TYPE     38     88     42     87     80
D590V2, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                8                 88
  CLUS_3                2                 42
  CLUS_4                1                 87
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90AA1 MUTATED        0      5      4      1      0
  HSP90AA1 WILD-TYPE     26     74     69     81     58
D590V3, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                5                 74
  CLUS_3                4                 69
  CLUS_4                1                 81
  CLUS_5                0                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AA1 MUTATED        1      4      4      1
  HSP90AA1 WILD-TYPE    126     47     67     68
D590V4, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                1                126
  CLUS_2                4                 47
  CLUS_3                4                 67
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90AA1 MUTATED        1      2      6      0      2
  HSP90AA1 WILD-TYPE     83     83     79     69     45
D590V5, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 83
  CLUS_3                6                 79
  CLUS_4                0                 69
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSP90AA1 MUTATED        0      1      3      7
  HSP90AA1 WILD-TYPE     95     73    118     73
D590V6, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                0                 95
  CLUS_2                1                 73
  CLUS_3                3                118
  CLUS_4                7                 73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HSP90AA1 MUTATED        3      3      3      3      0      0
  HSP90AA1 WILD-TYPE     49     61     69    101     40     59
D590V7, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                3                 61
  CLUS_3                3                 69
  CLUS_4                3                101
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSP90AA1 MUTATED        9      2      1
  HSP90AA1 WILD-TYPE    208     73     98
D590V8, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                9                208
  CLUS_2                2                 73
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HSP90AA1 MUTATED        3      2      4
  HSP90AA1 WILD-TYPE    118    106     68
D590V9, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                3                118
  CLUS_2                2                106
  CLUS_3                4                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSP90AA1 MUTATED        4      1      1      0      3
  HSP90AA1 WILD-TYPE     84     65     44     55     44
D590V10, multiclass
        clus
vv       HSP90AA1 MUTATED HSP90AA1 WILD-TYPE
  CLUS_1                4                 84
  CLUS_2                1                 65
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(591) Variable = PRPF4B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF4B MUTATED        1      9      0      0
  PRPF4B WILD-TYPE    203    128     47      3
D591V1, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              1              203
  CLUS_2              9              128
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRPF4B MUTATED        0      4      2      1      0
  PRPF4B WILD-TYPE     39     92     42     87     80
D591V2, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRPF4B MUTATED        0      2      4      1      3
  PRPF4B WILD-TYPE     26     77     69     81     55
D591V3, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF4B MUTATED        2      5      2      1
  PRPF4B WILD-TYPE    125     46     69     68
D591V4, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              2              125
  CLUS_2              5               46
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRPF4B MUTATED        1      2      3      0      3
  PRPF4B WILD-TYPE     83     83     82     69     44
D591V5, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRPF4B MUTATED        1      1      1      6
  PRPF4B WILD-TYPE     94     73    120     74
D591V6, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              1               94
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRPF4B MUTATED        2      5      1      1      0      1
  PRPF4B WILD-TYPE     50     59     71    103     40     58
D591V7, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              2               50
  CLUS_2              5               59
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRPF4B MUTATED        8      1      1
  PRPF4B WILD-TYPE    209     74     98
D591V8, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              8              209
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PRPF4B MUTATED        4      0      3
  PRPF4B WILD-TYPE    117    108     69
D591V9, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              4              117
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRPF4B MUTATED        1      1      2      1      2
  PRPF4B WILD-TYPE     87     65     43     54     45
D591V10, multiclass
        clus
vv       PRPF4B MUTATED PRPF4B WILD-TYPE
  CLUS_1              1               87
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(592) Variable = BRCA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA2 MUTATED       10     21      2      0
  BRCA2 WILD-TYPE    194    116     45      3
D592V1, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1            10             194
  CLUS_2            21             116
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRCA2 MUTATED        2     17      4      2      3
  BRCA2 WILD-TYPE     37     79     40     86     77
D592V2, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            17              79
  CLUS_3             4              40
  CLUS_4             2              86
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRCA2 MUTATED        2      8      9      2      8
  BRCA2 WILD-TYPE     24     71     64     80     50
D592V3, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             8              71
  CLUS_3             9              64
  CLUS_4             2              80
  CLUS_5             8              50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA2 MUTATED       10     12      4      3
  BRCA2 WILD-TYPE    117     39     67     66
D592V4, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1            10             117
  CLUS_2            12              39
  CLUS_3             4              67
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRCA2 MUTATED        2      4     16      4      2
  BRCA2 WILD-TYPE     82     81     69     65     45
D592V5, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             4              81
  CLUS_3            16              69
  CLUS_4             4              65
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA2 MUTATED        6      3      5     14
  BRCA2 WILD-TYPE     89     71    116     66
D592V6, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             3              71
  CLUS_3             5             116
  CLUS_4            14              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRCA2 MUTATED       10     10      7      5      1      0
  BRCA2 WILD-TYPE     42     54     65     99     39     59
D592V7, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1            10              42
  CLUS_2            10              54
  CLUS_3             7              65
  CLUS_4             5              99
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA2 MUTATED       28      3      2
  BRCA2 WILD-TYPE    189     72     97
D592V8, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1            28             189
  CLUS_2             3              72
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA2 MUTATED       12      4      9
  BRCA2 WILD-TYPE    109    104     63
D592V9, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1            12             109
  CLUS_2             4             104
  CLUS_3             9              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRCA2 MUTATED        7      3      5      1      9
  BRCA2 WILD-TYPE     81     63     40     54     38
D592V10, multiclass
        clus
vv       BRCA2 MUTATED BRCA2 WILD-TYPE
  CLUS_1             7              81
  CLUS_2             3              63
  CLUS_3             5              40
  CLUS_4             1              54
  CLUS_5             9              38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(593) Variable = MAP3K1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K1 MUTATED        0     15      0      0
  MAP3K1 WILD-TYPE    204    122     47      3
D593V1, multiclass
        clus
vv       MAP3K1 MUTATED MAP3K1 WILD-TYPE
  CLUS_1              0              204
  CLUS_2             15              122
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP3K1 MUTATED        1      7      2      0      2
  MAP3K1 WILD-TYPE     38     89     42     88     78
D593V2, multiclass
        clus
vv       MAP3K1 MUTATED MAP3K1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              7               89
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP3K1 MUTATED        2      8      2      1      1
  MAP3K1 WILD-TYPE     24     71     71     81     57
D593V3, multiclass
        clus
vv       MAP3K1 MUTATED MAP3K1 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              8               71
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K1 MUTATED        3      6      4      1
  MAP3K1 WILD-TYPE    124     45     67     68
D593V4, multiclass
        clus
vv       MAP3K1 MUTATED MAP3K1 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              6               45
  CLUS_3              4               67
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP3K1 MUTATED        0      4      4      2      2
  MAP3K1 WILD-TYPE     84     81     81     67     45
D593V5, multiclass
        clus
vv       MAP3K1 MUTATED MAP3K1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              4               81
  CLUS_3              4               81
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP3K1 MUTATED        2      4      1      5
  MAP3K1 WILD-TYPE     93     70    120     75
D593V6, multiclass
        clus
vv       MAP3K1 MUTATED MAP3K1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              4               70
  CLUS_3              1              120
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP3K1 MUTATED        4      6      1      4      0      0
  MAP3K1 WILD-TYPE     48     58     71    100     40     59
D593V7, multiclass
        clus
vv       MAP3K1 MUTATED MAP3K1 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              6               58
  CLUS_3              1               71
  CLUS_4              4              100
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP3K1 MUTATED       13      2      0
  MAP3K1 WILD-TYPE    204     73     99
D593V8, multiclass
        clus
vv       MAP3K1 MUTATED MAP3K1 WILD-TYPE
  CLUS_1             13              204
  CLUS_2              2               73
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP3K1 MUTATED        3      4      5
  MAP3K1 WILD-TYPE    118    104     67
D593V9, multiclass
        clus
vv       MAP3K1 MUTATED MAP3K1 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              4              104
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP3K1 MUTATED        2      3      4      0      3
  MAP3K1 WILD-TYPE     86     63     41     55     44
D593V10, multiclass
        clus
vv       MAP3K1 MUTATED MAP3K1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              3               63
  CLUS_3              4               41
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(594) Variable = ASPN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPN MUTATED        0      6      0      0
  ASPN WILD-TYPE    204    131     47      3
D594V1, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            0            204
  CLUS_2            6            131
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASPN MUTATED        1      2      2      0      0
  ASPN WILD-TYPE     38     94     42     88     80
D594V2, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            1             38
  CLUS_2            2             94
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASPN MUTATED        0      1      2      0      3
  ASPN WILD-TYPE     26     78     71     82     55
D594V3, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPN MUTATED        1      3      1      1
  ASPN WILD-TYPE    126     48     70     68
D594V4, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            1            126
  CLUS_2            3             48
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASPN MUTATED        0      2      2      1      1
  ASPN WILD-TYPE     84     83     83     68     46
D594V5, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            2             83
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASPN MUTATED        1      1      0      4
  ASPN WILD-TYPE     94     73    121     76
D594V6, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASPN MUTATED        1      2      2      1      0      0
  ASPN WILD-TYPE     51     62     70    103     40     59
D594V7, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            1             51
  CLUS_2            2             62
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASPN MUTATED        5      0      1
  ASPN WILD-TYPE    212     75     98
D594V8, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            5            212
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ASPN MUTATED        3      0      1
  ASPN WILD-TYPE    118    108     71
D594V9, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASPN MUTATED        4      0      0      0      0
  ASPN WILD-TYPE     84     66     45     55     47
D594V10, multiclass
        clus
vv       ASPN MUTATED ASPN WILD-TYPE
  CLUS_1            4             84
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(595) Variable = PHACTR1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR1 MUTATED        1      8      1      0
  PHACTR1 WILD-TYPE    203    129     46      3
D595V1, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               8               129
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR1 MUTATED        0      5      0      1      0
  PHACTR1 WILD-TYPE     39     91     44     87     80
D595V2, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               5                91
  CLUS_3               0                44
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR1 MUTATED        0      2      3      2      3
  PHACTR1 WILD-TYPE     26     77     70     80     55
D595V3, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               3                70
  CLUS_4               2                80
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR1 MUTATED        1      6      1      2
  PHACTR1 WILD-TYPE    126     45     70     67
D595V4, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               6                45
  CLUS_3               1                70
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR1 MUTATED        0      3      3      0      4
  PHACTR1 WILD-TYPE     84     82     82     69     43
D595V5, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               3                82
  CLUS_3               3                82
  CLUS_4               0                69
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR1 MUTATED        1      4      0      5
  PHACTR1 WILD-TYPE     94     70    121     75
D595V6, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               4                70
  CLUS_3               0               121
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHACTR1 MUTATED        4      3      0      2      1      0
  PHACTR1 WILD-TYPE     48     61     72    102     39     59
D595V7, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               3                61
  CLUS_3               0                72
  CLUS_4               2               102
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR1 MUTATED        7      2      1
  PHACTR1 WILD-TYPE    210     73     98
D595V8, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               7               210
  CLUS_2               2                73
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR1 MUTATED        2      2      2
  PHACTR1 WILD-TYPE    119    106     70
D595V9, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               2               106
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR1 MUTATED        1      1      0      1      3
  PHACTR1 WILD-TYPE     87     65     45     54     44
D595V10, multiclass
        clus
vv       PHACTR1 MUTATED PHACTR1 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               1                65
  CLUS_3               0                45
  CLUS_4               1                54
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(596) Variable = DNAJB13 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJB13 MUTATED        1      5      0      0
  DNAJB13 WILD-TYPE    203    132     47      3
D596V1, multiclass
        clus
vv       DNAJB13 MUTATED DNAJB13 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               5               132
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJB13 MUTATED        0      3      1      1      0
  DNAJB13 WILD-TYPE     39     93     43     87     80
D596V2, multiclass
        clus
vv       DNAJB13 MUTATED DNAJB13 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJB13 MUTATED        0      2      3      0      1
  DNAJB13 WILD-TYPE     26     77     70     82     57
D596V3, multiclass
        clus
vv       DNAJB13 MUTATED DNAJB13 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               3                70
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJB13 MUTATED        1      3      1      1
  DNAJB13 WILD-TYPE    126     48     70     68
D596V4, multiclass
        clus
vv       DNAJB13 MUTATED DNAJB13 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               3                48
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJB13 MUTATED        1      2      2      0      0
  DNAJB13 WILD-TYPE     83     83     83     69     47
D596V5, multiclass
        clus
vv       DNAJB13 MUTATED DNAJB13 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               2                83
  CLUS_3               2                83
  CLUS_4               0                69
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJB13 MUTATED        0      1      1      3
  DNAJB13 WILD-TYPE     95     73    120     77
D596V6, multiclass
        clus
vv       DNAJB13 MUTATED DNAJB13 WILD-TYPE
  CLUS_1               0                95
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNAJB13 MUTATED        1      1      1      1      1      1
  DNAJB13 WILD-TYPE     51     63     71    103     39     58
D596V7, multiclass
        clus
vv       DNAJB13 MUTATED DNAJB13 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               1                63
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DNAJB13 MUTATED        4      0      2
  DNAJB13 WILD-TYPE    213     75     97
D596V8, multiclass
        clus
vv       DNAJB13 MUTATED DNAJB13 WILD-TYPE
  CLUS_1               4               213
  CLUS_2               0                75
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DNAJB13 MUTATED        3      1      1
  DNAJB13 WILD-TYPE    118    107     71
D596V9, multiclass
        clus
vv       DNAJB13 MUTATED DNAJB13 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               1               107
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJB13 MUTATED        2      0      0      1      2
  DNAJB13 WILD-TYPE     86     66     45     54     45
D596V10, multiclass
        clus
vv       DNAJB13 MUTATED DNAJB13 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               1                54
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(597) Variable = KDM3B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM3B MUTATED        5     14      1      0
  KDM3B WILD-TYPE    199    123     46      3
D597V1, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             5             199
  CLUS_2            14             123
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM3B MUTATED        1      8      1      1      5
  KDM3B WILD-TYPE     38     88     43     87     75
D597V2, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             1              38
  CLUS_2             8              88
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             5              75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM3B MUTATED        4      5      6      1      2
  KDM3B WILD-TYPE     22     74     67     81     56
D597V3, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             4              22
  CLUS_2             5              74
  CLUS_3             6              67
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM3B MUTATED        6      8      3      1
  KDM3B WILD-TYPE    121     43     68     68
D597V4, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             6             121
  CLUS_2             8              43
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM3B MUTATED        2      3      9      1      3
  KDM3B WILD-TYPE     82     82     76     68     44
D597V5, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             2              82
  CLUS_2             3              82
  CLUS_3             9              76
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KDM3B MUTATED        5      4      3      6
  KDM3B WILD-TYPE     90     70    118     74
D597V6, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             5              90
  CLUS_2             4              70
  CLUS_3             3             118
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KDM3B MUTATED        4      6      4      3      1      2
  KDM3B WILD-TYPE     48     58     68    101     39     57
D597V7, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             4              48
  CLUS_2             6              58
  CLUS_3             4              68
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM3B MUTATED       14      4      2
  KDM3B WILD-TYPE    203     71     97
D597V8, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1            14             203
  CLUS_2             4              71
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KDM3B MUTATED        6      3      5
  KDM3B WILD-TYPE    115    105     67
D597V9, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             6             115
  CLUS_2             3             105
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KDM3B MUTATED        3      4      3      0      4
  KDM3B WILD-TYPE     85     62     42     55     43
D597V10, multiclass
        clus
vv       KDM3B MUTATED KDM3B WILD-TYPE
  CLUS_1             3              85
  CLUS_2             4              62
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(598) Variable = PDCD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDCD1 MUTATED        0      4      0      0
  PDCD1 WILD-TYPE    204    133     47      3
D598V1, multiclass
        clus
vv       PDCD1 MUTATED PDCD1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             4             133
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDCD1 MUTATED        0      4      0      0      0
  PDCD1 WILD-TYPE     39     92     44     88     80
D598V2, multiclass
        clus
vv       PDCD1 MUTATED PDCD1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDCD1 MUTATED        0      1      0      1      1
  PDCD1 WILD-TYPE     26     78     73     81     57
D598V3, multiclass
        clus
vv       PDCD1 MUTATED PDCD1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             0              73
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDCD1 MUTATED        0      2      0      1
  PDCD1 WILD-TYPE    127     49     71     68
D598V4, multiclass
        clus
vv       PDCD1 MUTATED PDCD1 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             2              49
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDCD1 MUTATED        0      1      4      0      0
  PDCD1 WILD-TYPE     84     84     81     69     47
D598V5, multiclass
        clus
vv       PDCD1 MUTATED PDCD1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             4              81
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDCD1 MUTATED        0      1      1      3
  PDCD1 WILD-TYPE     95     73    120     77
D598V6, multiclass
        clus
vv       PDCD1 MUTATED PDCD1 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PDCD1 MUTATED        2      1      1      0      1      0
  PDCD1 WILD-TYPE     50     63     71    104     39     59
D598V7, multiclass
        clus
vv       PDCD1 MUTATED PDCD1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             1              63
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDCD1 MUTATED        4      1      0
  PDCD1 WILD-TYPE    213     74     99
D598V8, multiclass
        clus
vv       PDCD1 MUTATED PDCD1 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDCD1 MUTATED        2      1      1
  PDCD1 WILD-TYPE    119    107     71
D598V9, multiclass
        clus
vv       PDCD1 MUTATED PDCD1 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDCD1 MUTATED        2      0      0      0      2
  PDCD1 WILD-TYPE     86     66     45     55     45
D598V10, multiclass
        clus
vv       PDCD1 MUTATED PDCD1 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(599) Variable = SYCP2L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYCP2L MUTATED        2      9      2      0
  SYCP2L WILD-TYPE    202    128     45      3
D599V1, multiclass
        clus
vv       SYCP2L MUTATED SYCP2L WILD-TYPE
  CLUS_1              2              202
  CLUS_2              9              128
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP2L MUTATED        0      5      1      1      3
  SYCP2L WILD-TYPE     39     91     43     87     77
D599V2, multiclass
        clus
vv       SYCP2L MUTATED SYCP2L WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP2L MUTATED        0      4      1      2      4
  SYCP2L WILD-TYPE     26     75     72     80     54
D599V3, multiclass
        clus
vv       SYCP2L MUTATED SYCP2L WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              1               72
  CLUS_4              2               80
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYCP2L MUTATED        3      4      2      2
  SYCP2L WILD-TYPE    124     47     69     67
D599V4, multiclass
        clus
vv       SYCP2L MUTATED SYCP2L WILD-TYPE
  CLUS_1              3              124
  CLUS_2              4               47
  CLUS_3              2               69
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP2L MUTATED        1      2      5      3      2
  SYCP2L WILD-TYPE     83     83     80     66     45
D599V5, multiclass
        clus
vv       SYCP2L MUTATED SYCP2L WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              5               80
  CLUS_4              3               66
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYCP2L MUTATED        7      1      2      3
  SYCP2L WILD-TYPE     88     73    119     77
D599V6, multiclass
        clus
vv       SYCP2L MUTATED SYCP2L WILD-TYPE
  CLUS_1              7               88
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYCP2L MUTATED        4      5      0      3      0      1
  SYCP2L WILD-TYPE     48     59     72    101     40     58
D599V7, multiclass
        clus
vv       SYCP2L MUTATED SYCP2L WILD-TYPE
  CLUS_1              4               48
  CLUS_2              5               59
  CLUS_3              0               72
  CLUS_4              3              101
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SYCP2L MUTATED        8      2      3
  SYCP2L WILD-TYPE    209     73     96
D599V8, multiclass
        clus
vv       SYCP2L MUTATED SYCP2L WILD-TYPE
  CLUS_1              8              209
  CLUS_2              2               73
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SYCP2L MUTATED        4      4      2
  SYCP2L WILD-TYPE    117    104     70
D599V9, multiclass
        clus
vv       SYCP2L MUTATED SYCP2L WILD-TYPE
  CLUS_1              4              117
  CLUS_2              4              104
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYCP2L MUTATED        2      1      2      2      3
  SYCP2L WILD-TYPE     86     65     43     53     44
D599V10, multiclass
        clus
vv       SYCP2L MUTATED SYCP2L WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              2               53
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(600) Variable = RNF111 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF111 MUTATED        1      9      1      0
  RNF111 WILD-TYPE    203    128     46      3
D600V1, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              9              128
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF111 MUTATED        1      4      0      0      1
  RNF111 WILD-TYPE     38     92     44     88     79
D600V2, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               92
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF111 MUTATED        1      3      3      0      4
  RNF111 WILD-TYPE     25     76     70     82     54
D600V3, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF111 MUTATED        2      7      1      1
  RNF111 WILD-TYPE    125     44     70     68
D600V4, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              7               44
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF111 MUTATED        0      2      4      1      3
  RNF111 WILD-TYPE     84     83     81     68     44
D600V5, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNF111 MUTATED        1      2      1      6
  RNF111 WILD-TYPE     94     72    120     74
D600V6, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNF111 MUTATED        3      6      0      1      1      0
  RNF111 WILD-TYPE     49     58     72    103     39     59
D600V7, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              6               58
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF111 MUTATED        9      1      1
  RNF111 WILD-TYPE    208     74     98
D600V8, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RNF111 MUTATED        4      0      2
  RNF111 WILD-TYPE    117    108     70
D600V9, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNF111 MUTATED        3      0      2      0      1
  RNF111 WILD-TYPE     85     66     43     55     46
D600V10, multiclass
        clus
vv       RNF111 MUTATED RNF111 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(601) Variable = OPLAH MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPLAH MUTATED        2     20      1      0
  OPLAH WILD-TYPE    202    117     46      3
D601V1, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2             202
  CLUS_2            20             117
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPLAH MUTATED        0     13      3      1      1
  OPLAH WILD-TYPE     39     83     41     87     79
D601V2, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             0              39
  CLUS_2            13              83
  CLUS_3             3              41
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPLAH MUTATED        2      4      8      1      6
  OPLAH WILD-TYPE     24     75     65     81     52
D601V3, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              24
  CLUS_2             4              75
  CLUS_3             8              65
  CLUS_4             1              81
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPLAH MUTATED        5     12      2      2
  OPLAH WILD-TYPE    122     39     69     67
D601V4, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             5             122
  CLUS_2            12              39
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPLAH MUTATED        2      5     10      1      4
  OPLAH WILD-TYPE     82     80     75     68     43
D601V5, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             2              82
  CLUS_2             5              80
  CLUS_3            10              75
  CLUS_4             1              68
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OPLAH MUTATED        3      3      3     13
  OPLAH WILD-TYPE     92     71    118     67
D601V6, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             3              92
  CLUS_2             3              71
  CLUS_3             3             118
  CLUS_4            13              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OPLAH MUTATED        5      6      4      4      2      2
  OPLAH WILD-TYPE     47     58     68    100     38     57
D601V7, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             5              47
  CLUS_2             6              58
  CLUS_3             4              68
  CLUS_4             4             100
  CLUS_5             2              38
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED       16      3      4
  OPLAH WILD-TYPE    201     72     95
D601V8, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1            16             201
  CLUS_2             3              72
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OPLAH MUTATED        8      4      6
  OPLAH WILD-TYPE    113    104     66
D601V9, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             8             113
  CLUS_2             4             104
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OPLAH MUTATED        7      2      1      1      7
  OPLAH WILD-TYPE     81     64     44     54     40
D601V10, multiclass
        clus
vv       OPLAH MUTATED OPLAH WILD-TYPE
  CLUS_1             7              81
  CLUS_2             2              64
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(602) Variable = DYX1C1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYX1C1 MUTATED        2      9      1      0
  DYX1C1 WILD-TYPE    202    128     46      3
D602V1, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              9              128
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYX1C1 MUTATED        2      6      0      1      1
  DYX1C1 WILD-TYPE     37     90     44     87     79
D602V2, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              6               90
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYX1C1 MUTATED        0      3      4      0      2
  DYX1C1 WILD-TYPE     26     76     69     82     56
D602V3, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              4               69
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYX1C1 MUTATED        1      6      1      1
  DYX1C1 WILD-TYPE    126     45     70     68
D602V4, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              6               45
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYX1C1 MUTATED        1      3      5      1      1
  DYX1C1 WILD-TYPE     83     82     80     68     46
D602V5, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               82
  CLUS_3              5               80
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DYX1C1 MUTATED        3      3      2      3
  DYX1C1 WILD-TYPE     92     71    119     77
D602V6, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              3               71
  CLUS_3              2              119
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DYX1C1 MUTATED        3      4      1      3      0      1
  DYX1C1 WILD-TYPE     49     60     71    101     40     58
D602V7, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              3              101
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DYX1C1 MUTATED        8      3      1
  DYX1C1 WILD-TYPE    209     72     98
D602V8, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              8              209
  CLUS_2              3               72
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DYX1C1 MUTATED        2      2      5
  DYX1C1 WILD-TYPE    119    106     67
D602V9, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              2              106
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DYX1C1 MUTATED        3      2      2      0      2
  DYX1C1 WILD-TYPE     85     64     43     55     45
D602V10, multiclass
        clus
vv       DYX1C1 MUTATED DYX1C1 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              2               64
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(603) Variable = RSF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSF1 MUTATED        4      9      2      0
  RSF1 WILD-TYPE    200    128     45      3
D603V1, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            4            200
  CLUS_2            9            128
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RSF1 MUTATED        3      2      4      1      0
  RSF1 WILD-TYPE     36     94     40     87     80
D603V2, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            3             36
  CLUS_2            2             94
  CLUS_3            4             40
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RSF1 MUTATED        0      5      3      1      5
  RSF1 WILD-TYPE     26     74     70     81     53
D603V3, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            5             74
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            5             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSF1 MUTATED        3      6      4      1
  RSF1 WILD-TYPE    124     45     67     68
D603V4, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            6             45
  CLUS_3            4             67
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RSF1 MUTATED        2      2      6      3      1
  RSF1 WILD-TYPE     82     83     79     66     46
D603V5, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            2             83
  CLUS_3            6             79
  CLUS_4            3             66
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RSF1 MUTATED        5      2      2      5
  RSF1 WILD-TYPE     90     72    119     75
D603V6, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            5             90
  CLUS_2            2             72
  CLUS_3            2            119
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RSF1 MUTATED        1      7      2      2      2      1
  RSF1 WILD-TYPE     51     57     70    102     38     58
D603V7, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            7             57
  CLUS_3            2             70
  CLUS_4            2            102
  CLUS_5            2             38
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RSF1 MUTATED       12      2      1
  RSF1 WILD-TYPE    205     73     98
D603V8, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1           12            205
  CLUS_2            2             73
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RSF1 MUTATED        4      0      3
  RSF1 WILD-TYPE    117    108     69
D603V9, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            0            108
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RSF1 MUTATED        2      0      3      0      2
  RSF1 WILD-TYPE     86     66     42     55     45
D603V10, multiclass
        clus
vv       RSF1 MUTATED RSF1 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(604) Variable = PRICKLE4 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRICKLE4 MUTATED        0      4      2      0
  PRICKLE4 WILD-TYPE    204    133     45      3
D604V1, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                0                204
  CLUS_2                4                133
  CLUS_3                2                 45
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRICKLE4 MUTATED        1      1      0      0      1
  PRICKLE4 WILD-TYPE     38     95     44     88     79
D604V2, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                1                 95
  CLUS_3                0                 44
  CLUS_4                0                 88
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRICKLE4 MUTATED        1      2      1      0      2
  PRICKLE4 WILD-TYPE     25     77     72     82     56
D604V3, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                2                 77
  CLUS_3                1                 72
  CLUS_4                0                 82
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRICKLE4 MUTATED        2      2      2      0
  PRICKLE4 WILD-TYPE    125     49     69     69
D604V4, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                2                 49
  CLUS_3                2                 69
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRICKLE4 MUTATED        0      1      1      3      1
  PRICKLE4 WILD-TYPE     84     84     84     66     46
D604V5, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                1                 84
  CLUS_4                3                 66
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRICKLE4 MUTATED        4      1      1      0
  PRICKLE4 WILD-TYPE     91     73    120     80
D604V6, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                4                 91
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                0                 80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRICKLE4 MUTATED        0      5      0      0      1      0
  PRICKLE4 WILD-TYPE     52     59     72    104     39     59
D604V7, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                0                 52
  CLUS_2                5                 59
  CLUS_3                0                 72
  CLUS_4                0                104
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PRICKLE4 MUTATED        5      1      0
  PRICKLE4 WILD-TYPE    212     74     99
D604V8, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                5                212
  CLUS_2                1                 74
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PRICKLE4 MUTATED        1      0      2
  PRICKLE4 WILD-TYPE    120    108     70
D604V9, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                1                120
  CLUS_2                0                108
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRICKLE4 MUTATED        0      0      2      0      1
  PRICKLE4 WILD-TYPE     88     66     43     55     46
D604V10, multiclass
        clus
vv       PRICKLE4 MUTATED PRICKLE4 WILD-TYPE
  CLUS_1                0                 88
  CLUS_2                0                 66
  CLUS_3                2                 43
  CLUS_4                0                 55
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(605) Variable = ANTXR1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANTXR1 MUTATED        3      7      0      0
  ANTXR1 WILD-TYPE    201    130     47      3
D605V1, multiclass
        clus
vv       ANTXR1 MUTATED ANTXR1 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANTXR1 MUTATED        1      6      0      1      1
  ANTXR1 WILD-TYPE     38     90     44     87     79
D605V2, multiclass
        clus
vv       ANTXR1 MUTATED ANTXR1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               90
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANTXR1 MUTATED        1      1      2      1      3
  ANTXR1 WILD-TYPE     25     78     71     81     55
D605V3, multiclass
        clus
vv       ANTXR1 MUTATED ANTXR1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANTXR1 MUTATED        2      3      1      2
  ANTXR1 WILD-TYPE    125     48     70     67
D605V4, multiclass
        clus
vv       ANTXR1 MUTATED ANTXR1 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              3               48
  CLUS_3              1               70
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANTXR1 MUTATED        1      1      4      3      1
  ANTXR1 WILD-TYPE     83     84     81     66     46
D605V5, multiclass
        clus
vv       ANTXR1 MUTATED ANTXR1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              4               81
  CLUS_4              3               66
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANTXR1 MUTATED        5      2      1      2
  ANTXR1 WILD-TYPE     90     72    120     78
D605V6, multiclass
        clus
vv       ANTXR1 MUTATED ANTXR1 WILD-TYPE
  CLUS_1              5               90
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANTXR1 MUTATED        2      3      2      1      1      1
  ANTXR1 WILD-TYPE     50     61     70    103     39     58
D605V7, multiclass
        clus
vv       ANTXR1 MUTATED ANTXR1 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              3               61
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANTXR1 MUTATED        6      2      2
  ANTXR1 WILD-TYPE    211     73     97
D605V8, multiclass
        clus
vv       ANTXR1 MUTATED ANTXR1 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANTXR1 MUTATED        2      2      4
  ANTXR1 WILD-TYPE    119    106     68
D605V9, multiclass
        clus
vv       ANTXR1 MUTATED ANTXR1 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              2              106
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANTXR1 MUTATED        3      1      2      1      1
  ANTXR1 WILD-TYPE     85     65     43     54     46
D605V10, multiclass
        clus
vv       ANTXR1 MUTATED ANTXR1 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(606) Variable = DNAJA1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJA1 MUTATED        0      9      0      0
  DNAJA1 WILD-TYPE    204    128     47      3
D606V1, multiclass
        clus
vv       DNAJA1 MUTATED DNAJA1 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              9              128
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJA1 MUTATED        0      6      0      0      1
  DNAJA1 WILD-TYPE     39     90     44     88     79
D606V2, multiclass
        clus
vv       DNAJA1 MUTATED DNAJA1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              6               90
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJA1 MUTATED        2      1      3      0      2
  DNAJA1 WILD-TYPE     24     78     70     82     56
D606V3, multiclass
        clus
vv       DNAJA1 MUTATED DNAJA1 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              1               78
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJA1 MUTATED        3      4      1      0
  DNAJA1 WILD-TYPE    124     47     70     69
D606V4, multiclass
        clus
vv       DNAJA1 MUTATED DNAJA1 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              4               47
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJA1 MUTATED        0      1      4      3      1
  DNAJA1 WILD-TYPE     84     84     81     66     46
D606V5, multiclass
        clus
vv       DNAJA1 MUTATED DNAJA1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              4               81
  CLUS_4              3               66
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DNAJA1 MUTATED        3      0      1      5
  DNAJA1 WILD-TYPE     92     74    120     75
D606V6, multiclass
        clus
vv       DNAJA1 MUTATED DNAJA1 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DNAJA1 MUTATED        4      4      0      1      0      0
  DNAJA1 WILD-TYPE     48     60     72    103     40     59
D606V7, multiclass
        clus
vv       DNAJA1 MUTATED DNAJA1 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              4               60
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJA1 MUTATED        7      0      2
  DNAJA1 WILD-TYPE    210     75     97
D606V8, multiclass
        clus
vv       DNAJA1 MUTATED DNAJA1 WILD-TYPE
  CLUS_1              7              210
  CLUS_2              0               75
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DNAJA1 MUTATED        2      1      3
  DNAJA1 WILD-TYPE    119    107     69
D606V9, multiclass
        clus
vv       DNAJA1 MUTATED DNAJA1 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DNAJA1 MUTATED        1      0      2      0      3
  DNAJA1 WILD-TYPE     87     66     43     55     44
D606V10, multiclass
        clus
vv       DNAJA1 MUTATED DNAJA1 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(607) Variable = C11ORF80 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF80 MUTATED        2      4      0      0
  C11ORF80 WILD-TYPE    202    133     47      3
D607V1, multiclass
        clus
vv       C11ORF80 MUTATED C11ORF80 WILD-TYPE
  CLUS_1                2                202
  CLUS_2                4                133
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF80 MUTATED        0      5      0      0      0
  C11ORF80 WILD-TYPE     39     91     44     88     80
D607V2, multiclass
        clus
vv       C11ORF80 MUTATED C11ORF80 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                5                 91
  CLUS_3                0                 44
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF80 MUTATED        0      5      0      0      0
  C11ORF80 WILD-TYPE     26     74     73     82     58
D607V3, multiclass
        clus
vv       C11ORF80 MUTATED C11ORF80 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                5                 74
  CLUS_3                0                 73
  CLUS_4                0                 82
  CLUS_5                0                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF80 MUTATED        0      3      2      0
  C11ORF80 WILD-TYPE    127     48     69     69
D607V4, multiclass
        clus
vv       C11ORF80 MUTATED C11ORF80 WILD-TYPE
  CLUS_1                0                127
  CLUS_2                3                 48
  CLUS_3                2                 69
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF80 MUTATED        0      0      4      0      2
  C11ORF80 WILD-TYPE     84     85     81     69     45
D607V5, multiclass
        clus
vv       C11ORF80 MUTATED C11ORF80 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                0                 85
  CLUS_3                4                 81
  CLUS_4                0                 69
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF80 MUTATED        0      0      0      6
  C11ORF80 WILD-TYPE     95     74    121     74
D607V6, multiclass
        clus
vv       C11ORF80 MUTATED C11ORF80 WILD-TYPE
  CLUS_1                0                 95
  CLUS_2                0                 74
  CLUS_3                0                121
  CLUS_4                6                 74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C11ORF80 MUTATED        1      1      3      1      0      0
  C11ORF80 WILD-TYPE     51     63     69    103     40     59
D607V7, multiclass
        clus
vv       C11ORF80 MUTATED C11ORF80 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                1                 63
  CLUS_3                3                 69
  CLUS_4                1                103
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF80 MUTATED        6      0      0
  C11ORF80 WILD-TYPE    211     75     99
D607V8, multiclass
        clus
vv       C11ORF80 MUTATED C11ORF80 WILD-TYPE
  CLUS_1                6                211
  CLUS_2                0                 75
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF80 MUTATED        3      1      0
  C11ORF80 WILD-TYPE    118    107     72
D607V9, multiclass
        clus
vv       C11ORF80 MUTATED C11ORF80 WILD-TYPE
  CLUS_1                3                118
  CLUS_2                1                107
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF80 MUTATED        2      0      0      0      2
  C11ORF80 WILD-TYPE     86     66     45     55     45
D607V10, multiclass
        clus
vv       C11ORF80 MUTATED C11ORF80 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                0                 66
  CLUS_3                0                 45
  CLUS_4                0                 55
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(608) Variable = CLCA4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCA4 MUTATED        4     12      0      0
  CLCA4 WILD-TYPE    200    125     47      3
D608V1, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            12             125
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCA4 MUTATED        0      8      2      2      2
  CLCA4 WILD-TYPE     39     88     42     86     78
D608V2, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             8              88
  CLUS_3             2              42
  CLUS_4             2              86
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCA4 MUTATED        0      9      3      2      2
  CLCA4 WILD-TYPE     26     70     70     80     56
D608V3, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             9              70
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCA4 MUTATED        0      7      5      4
  CLCA4 WILD-TYPE    127     44     66     65
D608V4, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             7              44
  CLUS_3             5              66
  CLUS_4             4              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCA4 MUTATED        2      2     12      0      1
  CLCA4 WILD-TYPE     82     83     73     69     46
D608V5, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             2              83
  CLUS_3            12              73
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLCA4 MUTATED        1      5      4      7
  CLCA4 WILD-TYPE     94     69    117     73
D608V6, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             5              69
  CLUS_3             4             117
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLCA4 MUTATED        4      6      3      1      2      1
  CLCA4 WILD-TYPE     48     58     69    103     38     58
D608V7, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             6              58
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLCA4 MUTATED       13      2      2
  CLCA4 WILD-TYPE    204     73     97
D608V8, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1            13             204
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLCA4 MUTATED        6      1      6
  CLCA4 WILD-TYPE    115    107     66
D608V9, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLCA4 MUTATED        5      0      4      1      3
  CLCA4 WILD-TYPE     83     66     41     54     44
D608V10, multiclass
        clus
vv       CLCA4 MUTATED CLCA4 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             0              66
  CLUS_3             4              41
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(609) Variable = ANAPC1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC1 MUTATED        1     14      1      0
  ANAPC1 WILD-TYPE    203    123     46      3
D609V1, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             14              123
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANAPC1 MUTATED        1      7      4      0      1
  ANAPC1 WILD-TYPE     38     89     40     88     79
D609V2, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              7               89
  CLUS_3              4               40
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANAPC1 MUTATED        1      6      4      0      4
  ANAPC1 WILD-TYPE     25     73     69     82     54
D609V3, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              6               73
  CLUS_3              4               69
  CLUS_4              0               82
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC1 MUTATED        1      9      4      1
  ANAPC1 WILD-TYPE    126     42     67     68
D609V4, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              9               42
  CLUS_3              4               67
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANAPC1 MUTATED        1      2     10      0      1
  ANAPC1 WILD-TYPE     83     83     75     69     46
D609V5, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3             10               75
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANAPC1 MUTATED        1      1      2     10
  ANAPC1 WILD-TYPE     94     73    119     70
D609V6, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4             10               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANAPC1 MUTATED        6      5      3      1      0      1
  ANAPC1 WILD-TYPE     46     59     69    103     40     58
D609V7, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              6               46
  CLUS_2              5               59
  CLUS_3              3               69
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANAPC1 MUTATED       11      2      3
  ANAPC1 WILD-TYPE    206     73     96
D609V8, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1             11              206
  CLUS_2              2               73
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANAPC1 MUTATED        4      2      5
  ANAPC1 WILD-TYPE    117    106     67
D609V9, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              2              106
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANAPC1 MUTATED        6      1      1      0      3
  ANAPC1 WILD-TYPE     82     65     44     55     44
D609V10, multiclass
        clus
vv       ANAPC1 MUTATED ANAPC1 WILD-TYPE
  CLUS_1              6               82
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(610) Variable = SYT4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT4 MUTATED        3      9      2      0
  SYT4 WILD-TYPE    201    128     45      3
D610V1, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1            3            201
  CLUS_2            9            128
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT4 MUTATED        1      5      2      0      3
  SYT4 WILD-TYPE     38     91     42     88     77
D610V2, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            5             91
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT4 MUTATED        1      3      1      3      4
  SYT4 WILD-TYPE     25     76     72     79     54
D610V3, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            1             72
  CLUS_4            3             79
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT4 MUTATED        3      3      2      4
  SYT4 WILD-TYPE    124     48     69     65
D610V4, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            3             48
  CLUS_3            2             69
  CLUS_4            4             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT4 MUTATED        1      5      4      3      1
  SYT4 WILD-TYPE     83     80     81     66     46
D610V5, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            5             80
  CLUS_3            4             81
  CLUS_4            3             66
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYT4 MUTATED        2      5      4      3
  SYT4 WILD-TYPE     93     69    117     77
D610V6, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            5             69
  CLUS_3            4            117
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYT4 MUTATED        1      5      3      3      2      0
  SYT4 WILD-TYPE     51     59     69    101     38     59
D610V7, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            5             59
  CLUS_3            3             69
  CLUS_4            3            101
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT4 MUTATED       11      2      1
  SYT4 WILD-TYPE    206     73     98
D610V8, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1           11            206
  CLUS_2            2             73
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYT4 MUTATED        5      3      2
  SYT4 WILD-TYPE    116    105     70
D610V9, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            3            105
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYT4 MUTATED        5      1      1      0      3
  SYT4 WILD-TYPE     83     65     44     55     44
D610V10, multiclass
        clus
vv       SYT4 MUTATED SYT4 WILD-TYPE
  CLUS_1            5             83
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(611) Variable = TAF6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF6 MUTATED        2     12      0      0
  TAF6 WILD-TYPE    202    125     47      3
D611V1, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            2            202
  CLUS_2           12            125
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF6 MUTATED        1      7      2      1      1
  TAF6 WILD-TYPE     38     89     42     87     79
D611V2, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            7             89
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF6 MUTATED        1      3      4      1      4
  TAF6 WILD-TYPE     25     76     69     81     54
D611V3, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            4             69
  CLUS_4            1             81
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF6 MUTATED        2      7      1      3
  TAF6 WILD-TYPE    125     44     70     66
D611V4, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            7             44
  CLUS_3            1             70
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF6 MUTATED        1      3      8      1      1
  TAF6 WILD-TYPE     83     82     77     68     46
D611V5, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            3             82
  CLUS_3            8             77
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF6 MUTATED        2      3      2      7
  TAF6 WILD-TYPE     93     71    119     73
D611V6, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            3             71
  CLUS_3            2            119
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAF6 MUTATED        4      4      1      2      2      1
  TAF6 WILD-TYPE     48     60     71    102     38     58
D611V7, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            4             60
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            2             38
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF6 MUTATED       10      2      2
  TAF6 WILD-TYPE    207     73     97
D611V8, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1           10            207
  CLUS_2            2             73
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TAF6 MUTATED        5      2      4
  TAF6 WILD-TYPE    116    106     68
D611V9, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            2            106
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF6 MUTATED        5      0      2      1      3
  TAF6 WILD-TYPE     83     66     43     54     44
D611V10, multiclass
        clus
vv       TAF6 MUTATED TAF6 WILD-TYPE
  CLUS_1            5             83
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(612) Variable = C9ORF41 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF41 MUTATED        0      5      0      0
  C9ORF41 WILD-TYPE    204    132     47      3
D612V1, multiclass
        clus
vv       C9ORF41 MUTATED C9ORF41 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               5               132
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF41 MUTATED        0      3      1      0      0
  C9ORF41 WILD-TYPE     39     93     43     88     80
D612V2, multiclass
        clus
vv       C9ORF41 MUTATED C9ORF41 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF41 MUTATED        0      1      2      1      0
  C9ORF41 WILD-TYPE     26     78     71     81     58
D612V3, multiclass
        clus
vv       C9ORF41 MUTATED C9ORF41 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                78
  CLUS_3               2                71
  CLUS_4               1                81
  CLUS_5               0                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF41 MUTATED        0      2      1      1
  C9ORF41 WILD-TYPE    127     49     70     68
D612V4, multiclass
        clus
vv       C9ORF41 MUTATED C9ORF41 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               2                49
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF41 MUTATED        0      0      3      0      2
  C9ORF41 WILD-TYPE     84     85     82     69     45
D612V5, multiclass
        clus
vv       C9ORF41 MUTATED C9ORF41 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               3                82
  CLUS_4               0                69
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF41 MUTATED        2      1      0      2
  C9ORF41 WILD-TYPE     93     73    121     78
D612V6, multiclass
        clus
vv       C9ORF41 MUTATED C9ORF41 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C9ORF41 MUTATED        1      2      1      0      1      0
  C9ORF41 WILD-TYPE     51     62     71    104     39     59
D612V7, multiclass
        clus
vv       C9ORF41 MUTATED C9ORF41 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               2                62
  CLUS_3               1                71
  CLUS_4               0               104
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF41 MUTATED        3      1      1
  C9ORF41 WILD-TYPE    214     74     98
D612V8, multiclass
        clus
vv       C9ORF41 MUTATED C9ORF41 WILD-TYPE
  CLUS_1               3               214
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF41 MUTATED        1      0      2
  C9ORF41 WILD-TYPE    120    108     70
D612V9, multiclass
        clus
vv       C9ORF41 MUTATED C9ORF41 WILD-TYPE
  CLUS_1               1               120
  CLUS_2               0               108
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF41 MUTATED        3      0      0      0      0
  C9ORF41 WILD-TYPE     85     66     45     55     47
D612V10, multiclass
        clus
vv       C9ORF41 MUTATED C9ORF41 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(613) Variable = MARCH7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARCH7 MUTATED        0      6      0      0
  MARCH7 WILD-TYPE    204    131     47      3
D613V1, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              6              131
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MARCH7 MUTATED        0      2      2      0      0
  MARCH7 WILD-TYPE     39     94     42     88     80
D613V2, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              2               94
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MARCH7 MUTATED        1      3      1      0      0
  MARCH7 WILD-TYPE     25     76     72     82     58
D613V3, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARCH7 MUTATED        2      1      2      0
  MARCH7 WILD-TYPE    125     50     69     69
D613V4, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              1               50
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MARCH7 MUTATED        1      0      1      1      1
  MARCH7 WILD-TYPE     83     85     84     68     46
D613V5, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               85
  CLUS_3              1               84
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MARCH7 MUTATED        2      0      0      2
  MARCH7 WILD-TYPE     93     74    121     78
D613V6, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0               74
  CLUS_3              0              121
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MARCH7 MUTATED        2      2      0      1      0      1
  MARCH7 WILD-TYPE     50     62     72    103     40     58
D613V7, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MARCH7 MUTATED        4      1      1
  MARCH7 WILD-TYPE    213     74     98
D613V8, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              4              213
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MARCH7 MUTATED        2      0      2
  MARCH7 WILD-TYPE    119    108     70
D613V9, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MARCH7 MUTATED        0      1      1      0      2
  MARCH7 WILD-TYPE     88     65     44     55     45
D613V10, multiclass
        clus
vv       MARCH7 MUTATED MARCH7 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(614) Variable = TAPT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAPT1 MUTATED        2      3      1      0
  TAPT1 WILD-TYPE    202    134     46      3
D614V1, multiclass
        clus
vv       TAPT1 MUTATED TAPT1 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             3             134
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAPT1 MUTATED        0      3      0      1      1
  TAPT1 WILD-TYPE     39     93     44     87     79
D614V2, multiclass
        clus
vv       TAPT1 MUTATED TAPT1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAPT1 MUTATED        1      1      2      0      2
  TAPT1 WILD-TYPE     25     78     71     82     56
D614V3, multiclass
        clus
vv       TAPT1 MUTATED TAPT1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAPT1 MUTATED        3      3      0      0
  TAPT1 WILD-TYPE    124     48     71     69
D614V4, multiclass
        clus
vv       TAPT1 MUTATED TAPT1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             3              48
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAPT1 MUTATED        1      1      3      1      0
  TAPT1 WILD-TYPE     83     84     82     68     47
D614V5, multiclass
        clus
vv       TAPT1 MUTATED TAPT1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAPT1 MUTATED        2      0      2      2
  TAPT1 WILD-TYPE     93     74    119     78
D614V6, multiclass
        clus
vv       TAPT1 MUTATED TAPT1 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             2             119
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAPT1 MUTATED        0      3      1      0      1      1
  TAPT1 WILD-TYPE     52     61     71    104     39     58
D614V7, multiclass
        clus
vv       TAPT1 MUTATED TAPT1 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAPT1 MUTATED        5      0      1
  TAPT1 WILD-TYPE    212     75     98
D614V8, multiclass
        clus
vv       TAPT1 MUTATED TAPT1 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAPT1 MUTATED        1      0      3
  TAPT1 WILD-TYPE    120    108     69
D614V9, multiclass
        clus
vv       TAPT1 MUTATED TAPT1 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             0             108
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAPT1 MUTATED        0      0      2      1      1
  TAPT1 WILD-TYPE     88     66     43     54     46
D614V10, multiclass
        clus
vv       TAPT1 MUTATED TAPT1 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(615) Variable = SDAD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SDAD1 MUTATED        1      7      0      0
  SDAD1 WILD-TYPE    203    130     47      3
D615V1, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SDAD1 MUTATED        0      4      2      0      0
  SDAD1 WILD-TYPE     39     92     42     88     80
D615V2, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SDAD1 MUTATED        0      2      3      1      2
  SDAD1 WILD-TYPE     26     77     70     81     56
D615V3, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SDAD1 MUTATED        1      4      2      1
  SDAD1 WILD-TYPE    126     47     69     68
D615V4, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SDAD1 MUTATED        0      2      4      0      1
  SDAD1 WILD-TYPE     84     83     81     69     46
D615V5, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             4              81
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SDAD1 MUTATED        1      2      0      4
  SDAD1 WILD-TYPE     94     72    121     76
D615V6, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SDAD1 MUTATED        0      3      1      3      1      0
  SDAD1 WILD-TYPE     52     61     71    101     39     59
D615V7, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SDAD1 MUTATED        6      2      0
  SDAD1 WILD-TYPE    211     73     99
D615V8, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             2              73
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SDAD1 MUTATED        1      1      2
  SDAD1 WILD-TYPE    120    107     70
D615V9, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SDAD1 MUTATED        3      0      1      0      0
  SDAD1 WILD-TYPE     85     66     44     55     47
D615V10, multiclass
        clus
vv       SDAD1 MUTATED SDAD1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(616) Variable = PPIAL4A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIAL4A MUTATED        0      0      3      0
  PPIAL4A WILD-TYPE    204    137     44      3
D616V1, multiclass
        clus
vv       PPIAL4A MUTATED PPIAL4A WILD-TYPE
  CLUS_1               0               204
  CLUS_2               0               137
  CLUS_3               3                44
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIAL4A MUTATED        1      1      1      0      0
  PPIAL4A WILD-TYPE     38     95     43     88     80
D616V2, multiclass
        clus
vv       PPIAL4A MUTATED PPIAL4A WILD-TYPE
  CLUS_1               1                38
  CLUS_2               1                95
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIAL4A MUTATED        0      0      0      1      2
  PPIAL4A WILD-TYPE     26     79     73     81     56
D616V3, multiclass
        clus
vv       PPIAL4A MUTATED PPIAL4A WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                79
  CLUS_3               0                73
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIAL4A MUTATED        0      1      0      2
  PPIAL4A WILD-TYPE    127     50     71     67
D616V4, multiclass
        clus
vv       PPIAL4A MUTATED PPIAL4A WILD-TYPE
  CLUS_1               0               127
  CLUS_2               1                50
  CLUS_3               0                71
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIAL4A MUTATED        0      1      1      0      0
  PPIAL4A WILD-TYPE     84     84     84     69     47
D616V5, multiclass
[1] "Remove cluster labels:" "PPIAL4A MUTATED"       
clus
  PPIAL4A MUTATED PPIAL4A WILD-TYPE 
                2               368 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-4187        TCGA-BR-4191 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-4201        TCGA-BR-4253        TCGA-BR-4255        TCGA-BR-4256 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-4257        TCGA-BR-4267        TCGA-BR-4279        TCGA-BR-4280 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-4292        TCGA-BR-4294        TCGA-BR-4357        TCGA-BR-4361 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-4362        TCGA-BR-4363        TCGA-BR-4366        TCGA-BR-4368 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-4369        TCGA-BR-4370        TCGA-BR-4371        TCGA-BR-6452 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-6453        TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-6565        TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-6707        TCGA-BR-6709        TCGA-BR-6801        TCGA-BR-6802 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-7703        TCGA-BR-7704        TCGA-BR-7707        TCGA-BR-7715 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-7716        TCGA-BR-7717        TCGA-BR-7722        TCGA-BR-7723 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7959 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8060        TCGA-BR-8077 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8081        TCGA-BR-8284 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8286        TCGA-BR-8289        TCGA-BR-8291        TCGA-BR-8295 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8297        TCGA-BR-8361        TCGA-BR-8363        TCGA-BR-8364 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8365        TCGA-BR-8366        TCGA-BR-8367        TCGA-BR-8368 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8369        TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8483        TCGA-BR-8484        TCGA-BR-8485        TCGA-BR-8486 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8589        TCGA-BR-8590 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676        TCGA-BR-8677 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680        TCGA-BR-8682 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687        TCGA-BR-8690 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-A44T        TCGA-BR-A44U        TCGA-BR-A452        TCGA-BR-A453 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU        TCGA-BR-A4IV 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1        TCGA-BR-A4J2 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-A4J4        TCGA-BR-A4J5        TCGA-BR-A4J6        TCGA-BR-A4J7 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4PE        TCGA-BR-A4PF 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-A4QI        TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5803 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8528        TCGA-CD-8529 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8533 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CD-8534        TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CD-A487        TCGA-CD-A489        TCGA-CD-A48A        TCGA-CD-A48C 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CD-A4MH        TCGA-CD-A4MI        TCGA-CD-A4MJ        TCGA-CG-4301 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-4304        TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-4442        TCGA-CG-4443        TCGA-CG-4444        TCGA-CG-4449 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-4460        TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-4469        TCGA-CG-4474        TCGA-CG-4475        TCGA-CG-4476 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-4477        TCGA-CG-5716        TCGA-CG-5717        TCGA-CG-5718 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5722 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725        TCGA-CG-5726 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-5732        TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-8572        TCGA-D7-8573        TCGA-D7-8574        TCGA-D7-8575 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-8576        TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YX        TCGA-D7-A4YY 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-A4Z0        TCGA-D7-A6EV        TCGA-D7-A6EX        TCGA-D7-A6EY 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-A6EZ        TCGA-D7-A6F0        TCGA-D7-A6F2        TCGA-D7-A747 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-A748        TCGA-D7-A74A        TCGA-EQ-8122        TCGA-EQ-A4SO 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-F1-A72C        TCGA-FP-7735        TCGA-FP-7829        TCGA-FP-7916 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-FP-7998        TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-FP-8211        TCGA-FP-8631        TCGA-FP-A4BE        TCGA-FP-A4BF 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-FP-A8CX        TCGA-FP-A9TM        TCGA-HF-7131        TCGA-HF-7132 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HF-7133        TCGA-HF-7134        TCGA-HF-7136        TCGA-HF-A5NB 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HJ-7597        TCGA-HU-8238        TCGA-HU-8243        TCGA-HU-8244 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-8249        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-8610        TCGA-HU-A4G2        TCGA-HU-A4G3        TCGA-HU-A4G6 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-A4G8        TCGA-HU-A4G9        TCGA-HU-A4GC        TCGA-HU-A4GD 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GJ        TCGA-HU-A4GN 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-A4GP        TCGA-HU-A4GQ        TCGA-HU-A4GT        TCGA-HU-A4GU 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H0        TCGA-HU-A4H2 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-A4H3        TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-A4H8        TCGA-HU-A4HB        TCGA-HU-A4HD        TCGA-IN-7806 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663        TCGA-IN-A6RI 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-IN-A6RJ        TCGA-IN-A6RL        TCGA-IN-A6RN        TCGA-IN-A6RO 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-IN-A6RR        TCGA-IN-A6RS        TCGA-IN-A7NR        TCGA-IN-A7NT 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-IN-A7NU        TCGA-IN-AB1V        TCGA-IN-AB1X        TCGA-IP-7968 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-KB-A6F7        TCGA-KB-A93G        TCGA-KB-A93J        TCGA-MX-A5UG 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-MX-A5UJ        TCGA-MX-A663        TCGA-MX-A666        TCGA-R5-A7O7 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-R5-A7ZE        TCGA-R5-A7ZF        TCGA-R5-A7ZI        TCGA-R5-A7ZR 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-R5-A805        TCGA-RD-A7BS        TCGA-RD-A7BT        TCGA-RD-A7BW 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-RD-A7C1        TCGA-RD-A8MV        TCGA-RD-A8MW        TCGA-RD-A8N0 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-RD-A8N1        TCGA-RD-A8N2        TCGA-RD-A8N4        TCGA-RD-A8N5 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-RD-A8N6        TCGA-RD-A8N9        TCGA-SW-A7EA        TCGA-SW-A7EB 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-VQ-A8DT        TCGA-VQ-A8DU        TCGA-VQ-A8DV        TCGA-VQ-A8DZ 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-VQ-A8E2        TCGA-VQ-A8E7        TCGA-VQ-A8P2        TCGA-VQ-A8P3 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-VQ-A8PE        TCGA-VQ-A8PK        TCGA-VQ-A8PM        TCGA-VQ-A8PQ 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-VQ-A91Q        TCGA-VQ-A91U        TCGA-VQ-A91V        TCGA-VQ-A92D 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-VQ-A94T        TCGA-VQ-AA64        TCGA-VQ-AA68        TCGA-VQ-AA69 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-VQ-AA6A        TCGA-VQ-AA6B        TCGA-VQ-AA6F        TCGA-VQ-AA6G 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-VQ-AA6I        TCGA-VQ-AA6J        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPIAL4A MUTATED        0      0      1      1
  PPIAL4A WILD-TYPE     95     74    120     79
D616V6, multiclass
[1] "Remove cluster labels:" "PPIAL4A MUTATED"       
clus
  PPIAL4A MUTATED PPIAL4A WILD-TYPE 
                2               368 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-4187        TCGA-BR-4191 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-4201        TCGA-BR-4253        TCGA-BR-4255        TCGA-BR-4256 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-4257        TCGA-BR-4267        TCGA-BR-4279        TCGA-BR-4280 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-4292        TCGA-BR-4294        TCGA-BR-4357        TCGA-BR-4361 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-4362        TCGA-BR-4363        TCGA-BR-4366        TCGA-BR-4368 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-4369        TCGA-BR-4370        TCGA-BR-4371        TCGA-BR-6452 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-6453        TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-6565        TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-6707        TCGA-BR-6709        TCGA-BR-6801        TCGA-BR-6802 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-7703        TCGA-BR-7704        TCGA-BR-7707        TCGA-BR-7715 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-7716        TCGA-BR-7717        TCGA-BR-7722        TCGA-BR-7723 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7959 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8060        TCGA-BR-8077 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8081        TCGA-BR-8284 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8286        TCGA-BR-8289        TCGA-BR-8291        TCGA-BR-8295 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8297        TCGA-BR-8361        TCGA-BR-8363        TCGA-BR-8364 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8365        TCGA-BR-8366        TCGA-BR-8367        TCGA-BR-8368 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8369        TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8483        TCGA-BR-8484        TCGA-BR-8485        TCGA-BR-8486 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8589        TCGA-BR-8590 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676        TCGA-BR-8677 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680        TCGA-BR-8682 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687        TCGA-BR-8690 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-A44T        TCGA-BR-A44U        TCGA-BR-A452        TCGA-BR-A453 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU        TCGA-BR-A4IV 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1        TCGA-BR-A4J2 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-A4J4        TCGA-BR-A4J5        TCGA-BR-A4J6        TCGA-BR-A4J7 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4PE        TCGA-BR-A4PF 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-BR-A4QI        TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5803 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8528        TCGA-CD-8529 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8533 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CD-8534        TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CD-A487        TCGA-CD-A489        TCGA-CD-A48A        TCGA-CD-A48C 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CD-A4MH        TCGA-CD-A4MI        TCGA-CD-A4MJ        TCGA-CG-4301 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-4304        TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4438        TCGA-CG-4440        TCGA-CG-4441 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-4442        TCGA-CG-4443        TCGA-CG-4444        TCGA-CG-4449 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-4460        TCGA-CG-4462        TCGA-CG-4465        TCGA-CG-4466 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-4469        TCGA-CG-4474        TCGA-CG-4475        TCGA-CG-4476 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-4477        TCGA-CG-5716        TCGA-CG-5717        TCGA-CG-5718 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5722 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725        TCGA-CG-5726 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-CG-5732        TCGA-CG-5734        TCGA-D7-5577        TCGA-D7-5578 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-8572        TCGA-D7-8573        TCGA-D7-8574        TCGA-D7-8575 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-8576        TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YX        TCGA-D7-A4YY 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-A4Z0        TCGA-D7-A6EV        TCGA-D7-A6EX        TCGA-D7-A6EY 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-A6EZ        TCGA-D7-A6F0        TCGA-D7-A6F2        TCGA-D7-A747 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-D7-A748        TCGA-D7-A74A        TCGA-EQ-8122        TCGA-EQ-A4SO 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-F1-A72C        TCGA-FP-7735        TCGA-FP-7829        TCGA-FP-7916 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-FP-7998        TCGA-FP-8099        TCGA-FP-8209        TCGA-FP-8210 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-FP-8211        TCGA-FP-8631        TCGA-FP-A4BE        TCGA-FP-A4BF 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-FP-A8CX        TCGA-FP-A9TM        TCGA-HF-7131        TCGA-HF-7132 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HF-7133        TCGA-HF-7134        TCGA-HF-7136        TCGA-HF-A5NB 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HJ-7597        TCGA-HU-8238        TCGA-HU-8243        TCGA-HU-8244 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-8249        TCGA-HU-8602        TCGA-HU-8604        TCGA-HU-8608 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-8610        TCGA-HU-A4G2        TCGA-HU-A4G3        TCGA-HU-A4G6 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-A4G8        TCGA-HU-A4G9        TCGA-HU-A4GC        TCGA-HU-A4GD 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GJ        TCGA-HU-A4GN 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-A4GP        TCGA-HU-A4GQ        TCGA-HU-A4GT        TCGA-HU-A4GU 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H0        TCGA-HU-A4H2 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-A4H3        TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4H6 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-HU-A4H8        TCGA-HU-A4HB        TCGA-HU-A4HD        TCGA-IN-7806 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663        TCGA-IN-A6RI 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-IN-A6RJ        TCGA-IN-A6RL        TCGA-IN-A6RN        TCGA-IN-A6RO 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-IN-A6RR        TCGA-IN-A6RS        TCGA-IN-A7NR        TCGA-IN-A7NT 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-IN-A7NU        TCGA-IN-AB1V        TCGA-IN-AB1X        TCGA-IP-7968 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-KB-A6F7        TCGA-KB-A93G        TCGA-KB-A93J        TCGA-MX-A5UG 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-MX-A5UJ        TCGA-MX-A663        TCGA-MX-A666        TCGA-R5-A7O7 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-R5-A7ZE        TCGA-R5-A7ZF        TCGA-R5-A7ZI        TCGA-R5-A7ZR 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-R5-A805        TCGA-RD-A7BS        TCGA-RD-A7BT        TCGA-RD-A7BW 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-RD-A7C1        TCGA-RD-A8MV        TCGA-RD-A8MW        TCGA-RD-A8N0 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-RD-A8N1        TCGA-RD-A8N2        TCGA-RD-A8N4        TCGA-RD-A8N5 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-RD-A8N6        TCGA-RD-A8N9        TCGA-SW-A7EA        TCGA-SW-A7EB 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-VQ-A8DT        TCGA-VQ-A8DU        TCGA-VQ-A8DV        TCGA-VQ-A8DZ 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-VQ-A8E2        TCGA-VQ-A8E7        TCGA-VQ-A8P2        TCGA-VQ-A8P3 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-VQ-A8PE        TCGA-VQ-A8PK        TCGA-VQ-A8PM        TCGA-VQ-A8PQ 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-VQ-A91Q        TCGA-VQ-A91U        TCGA-VQ-A91V        TCGA-VQ-A92D 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-VQ-A94T        TCGA-VQ-AA64        TCGA-VQ-AA68        TCGA-VQ-AA69 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-VQ-AA6A        TCGA-VQ-AA6B        TCGA-VQ-AA6F        TCGA-VQ-AA6G 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
       TCGA-VQ-AA6I        TCGA-VQ-AA6J        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" "PPIAL4A WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPIAL4A MUTATED        1      0      2      0      0      0
  PPIAL4A WILD-TYPE     51     64     70    104     40     59
D616V7, multiclass
        clus
vv       PPIAL4A MUTATED PPIAL4A WILD-TYPE
  CLUS_1               1                51
  CLUS_2               0                64
  CLUS_3               2                70
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPIAL4A MUTATED        2      1      0
  PPIAL4A WILD-TYPE    215     74     99
D616V8, multiclass
        clus
vv       PPIAL4A MUTATED PPIAL4A WILD-TYPE
  CLUS_1               2               215
  CLUS_2               1                74
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PPIAL4A MUTATED        2      0      1
  PPIAL4A WILD-TYPE    119    108     71
D616V9, multiclass
        clus
vv       PPIAL4A MUTATED PPIAL4A WILD-TYPE
  CLUS_1               2               119
  CLUS_2               0               108
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPIAL4A MUTATED        2      0      0      0      1
  PPIAL4A WILD-TYPE     86     66     45     55     46
D616V10, multiclass
        clus
vv       PPIAL4A MUTATED PPIAL4A WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(617) Variable = SCN10A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN10A MUTATED       12     22      5      0
  SCN10A WILD-TYPE    192    115     42      3
D617V1, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1             12              192
  CLUS_2             22              115
  CLUS_3              5               42
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCN10A MUTATED        3     17      7      5      3
  SCN10A WILD-TYPE     36     79     37     83     77
D617V2, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1              3               36
  CLUS_2             17               79
  CLUS_3              7               37
  CLUS_4              5               83
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCN10A MUTATED        1     12     10      5      6
  SCN10A WILD-TYPE     25     67     63     77     52
D617V3, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1              1               25
  CLUS_2             12               67
  CLUS_3             10               63
  CLUS_4              5               77
  CLUS_5              6               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN10A MUTATED        8     11      9      6
  SCN10A WILD-TYPE    119     40     62     63
D617V4, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1              8              119
  CLUS_2             11               40
  CLUS_3              9               62
  CLUS_4              6               63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCN10A MUTATED        7      7     14      6      3
  SCN10A WILD-TYPE     77     78     71     63     44
D617V5, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1              7               77
  CLUS_2              7               78
  CLUS_3             14               71
  CLUS_4              6               63
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCN10A MUTATED       11      5     12      9
  SCN10A WILD-TYPE     84     69    109     71
D617V6, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1             11               84
  CLUS_2              5               69
  CLUS_3             12              109
  CLUS_4              9               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCN10A MUTATED        4     11      8      7      6      3
  SCN10A WILD-TYPE     48     53     64     97     34     56
D617V7, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1              4               48
  CLUS_2             11               53
  CLUS_3              8               64
  CLUS_4              7               97
  CLUS_5              6               34
  CLUS_6              3               56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCN10A MUTATED       27      6      6
  SCN10A WILD-TYPE    190     69     93
D617V8, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1             27              190
  CLUS_2              6               69
  CLUS_3              6               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCN10A MUTATED       12      5     12
  SCN10A WILD-TYPE    109    103     60
D617V9, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1             12              109
  CLUS_2              5              103
  CLUS_3             12               60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCN10A MUTATED        8      4      6      3      8
  SCN10A WILD-TYPE     80     62     39     52     39
D617V10, multiclass
        clus
vv       SCN10A MUTATED SCN10A WILD-TYPE
  CLUS_1              8               80
  CLUS_2              4               62
  CLUS_3              6               39
  CLUS_4              3               52
  CLUS_5              8               39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(618) Variable = PSD MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSD MUTATED        4     11      3      0
  PSD WILD-TYPE    200    126     44      3
D618V1, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           4           200
  CLUS_2          11           126
  CLUS_3           3            44
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSD MUTATED        3     10      4      0      0
  PSD WILD-TYPE     36     86     40     88     80
D618V2, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           3            36
  CLUS_2          10            86
  CLUS_3           4            40
  CLUS_4           0            88
  CLUS_5           0            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSD MUTATED        1      3      3      1      5
  PSD WILD-TYPE     25     76     70     81     53
D618V3, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           1            25
  CLUS_2           3            76
  CLUS_3           3            70
  CLUS_4           1            81
  CLUS_5           5            53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSD MUTATED        4      6      1      2
  PSD WILD-TYPE    123     45     70     67
D618V4, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           4           123
  CLUS_2           6            45
  CLUS_3           1            70
  CLUS_4           2            67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSD MUTATED        1      1     11      3      2
  PSD WILD-TYPE     83     84     74     66     45
D618V5, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           1            83
  CLUS_2           1            84
  CLUS_3          11            74
  CLUS_4           3            66
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PSD MUTATED        4      1      3     10
  PSD WILD-TYPE     91     73    118     70
D618V6, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           4            91
  CLUS_2           1            73
  CLUS_3           3           118
  CLUS_4          10            70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PSD MUTATED        6      4      6      1      1      0
  PSD WILD-TYPE     46     60     66    103     39     59
D618V7, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           6            46
  CLUS_2           4            60
  CLUS_3           6            66
  CLUS_4           1           103
  CLUS_5           1            39
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PSD MUTATED       17      1      0
  PSD WILD-TYPE    200     74     99
D618V8, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1          17           200
  CLUS_2           1            74
  CLUS_3           0            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PSD MUTATED        7      0      4
  PSD WILD-TYPE    114    108     68
D618V9, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           7           114
  CLUS_2           0           108
  CLUS_3           4            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PSD MUTATED        7      0      1      0      3
  PSD WILD-TYPE     81     66     44     55     44
D618V10, multiclass
        clus
vv       PSD MUTATED PSD WILD-TYPE
  CLUS_1           7            81
  CLUS_2           0            66
  CLUS_3           1            44
  CLUS_4           0            55
  CLUS_5           3            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(619) Variable = PODN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODN MUTATED        2      8      1      0
  PODN WILD-TYPE    202    129     46      3
D619V1, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            2            202
  CLUS_2            8            129
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PODN MUTATED        1      3      2      1      2
  PODN WILD-TYPE     38     93     42     87     78
D619V2, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            1             38
  CLUS_2            3             93
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PODN MUTATED        1      3      1      2      3
  PODN WILD-TYPE     25     76     72     80     55
D619V3, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            1             72
  CLUS_4            2             80
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODN MUTATED        4      2      2      2
  PODN WILD-TYPE    123     49     69     67
D619V4, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            4            123
  CLUS_2            2             49
  CLUS_3            2             69
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PODN MUTATED        1      2      3      4      0
  PODN WILD-TYPE     83     83     82     65     47
D619V5, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            1             83
  CLUS_2            2             83
  CLUS_3            3             82
  CLUS_4            4             65
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PODN MUTATED        3      2      2      3
  PODN WILD-TYPE     92     72    119     77
D619V6, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            3             92
  CLUS_2            2             72
  CLUS_3            2            119
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PODN MUTATED        1      4      1      5      1      0
  PODN WILD-TYPE     51     60     71     99     39     59
D619V7, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            1             51
  CLUS_2            4             60
  CLUS_3            1             71
  CLUS_4            5             99
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PODN MUTATED        9      1      2
  PODN WILD-TYPE    208     74     97
D619V8, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            9            208
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PODN MUTATED        2      4      3
  PODN WILD-TYPE    119    104     69
D619V9, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            2            119
  CLUS_2            4            104
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PODN MUTATED        2      3      1      1      2
  PODN WILD-TYPE     86     63     44     54     45
D619V10, multiclass
        clus
vv       PODN MUTATED PODN WILD-TYPE
  CLUS_1            2             86
  CLUS_2            3             63
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(620) Variable = NUFIP2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUFIP2 MUTATED        1      4      3      0
  NUFIP2 WILD-TYPE    203    133     44      3
D620V1, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              4              133
  CLUS_3              3               44
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUFIP2 MUTATED        0      4      1      1      0
  NUFIP2 WILD-TYPE     39     92     43     87     80
D620V2, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUFIP2 MUTATED        0      1      5      0      2
  NUFIP2 WILD-TYPE     26     78     68     82     56
D620V3, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              5               68
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUFIP2 MUTATED        5      2      0      1
  NUFIP2 WILD-TYPE    122     49     71     68
D620V4, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              5              122
  CLUS_2              2               49
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUFIP2 MUTATED        0      2      2      2      2
  NUFIP2 WILD-TYPE     84     83     83     67     45
D620V5, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              2               83
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUFIP2 MUTATED        2      2      1      3
  NUFIP2 WILD-TYPE     93     72    120     77
D620V6, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NUFIP2 MUTATED        1      2      1      3      1      0
  NUFIP2 WILD-TYPE     51     62     71    101     39     59
D620V7, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              3              101
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUFIP2 MUTATED        6      1      1
  NUFIP2 WILD-TYPE    211     74     98
D620V8, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUFIP2 MUTATED        3      1      2
  NUFIP2 WILD-TYPE    118    107     70
D620V9, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUFIP2 MUTATED        4      1      1      0      0
  NUFIP2 WILD-TYPE     84     65     44     55     47
D620V10, multiclass
        clus
vv       NUFIP2 MUTATED NUFIP2 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(621) Variable = FRYL MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRYL MUTATED        7     17      0      0
  FRYL WILD-TYPE    197    120     47      3
D621V1, multiclass
        clus
vv       FRYL MUTATED FRYL WILD-TYPE
  CLUS_1            7            197
  CLUS_2           17            120
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FRYL MUTATED        1      8      2      5      1
  FRYL WILD-TYPE     38     88     42     83     79
D621V2, multiclass
        clus
vv       FRYL MUTATED FRYL WILD-TYPE
  CLUS_1            1             38
  CLUS_2            8             88
  CLUS_3            2             42
  CLUS_4            5             83
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FRYL MUTATED        2      8      5      2      5
  FRYL WILD-TYPE     24     71     68     80     53
D621V3, multiclass
        clus
vv       FRYL MUTATED FRYL WILD-TYPE
  CLUS_1            2             24
  CLUS_2            8             71
  CLUS_3            5             68
  CLUS_4            2             80
  CLUS_5            5             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRYL MUTATED        6      8      4      4
  FRYL WILD-TYPE    121     43     67     65
D621V4, multiclass
        clus
vv       FRYL MUTATED FRYL WILD-TYPE
  CLUS_1            6            121
  CLUS_2            8             43
  CLUS_3            4             67
  CLUS_4            4             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FRYL MUTATED        2      4     10      2      3
  FRYL WILD-TYPE     82     81     75     67     44
D621V5, multiclass
        clus
vv       FRYL MUTATED FRYL WILD-TYPE
  CLUS_1            2             82
  CLUS_2            4             81
  CLUS_3           10             75
  CLUS_4            2             67
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FRYL MUTATED        6      4      2      9
  FRYL WILD-TYPE     89     70    119     71
D621V6, multiclass
        clus
vv       FRYL MUTATED FRYL WILD-TYPE
  CLUS_1            6             89
  CLUS_2            4             70
  CLUS_3            2            119
  CLUS_4            9             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FRYL MUTATED        6     11      1      3      1      2
  FRYL WILD-TYPE     46     53     71    101     39     57
D621V7, multiclass
        clus
vv       FRYL MUTATED FRYL WILD-TYPE
  CLUS_1            6             46
  CLUS_2           11             53
  CLUS_3            1             71
  CLUS_4            3            101
  CLUS_5            1             39
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FRYL MUTATED       19      2      3
  FRYL WILD-TYPE    198     73     96
D621V8, multiclass
        clus
vv       FRYL MUTATED FRYL WILD-TYPE
  CLUS_1           19            198
  CLUS_2            2             73
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FRYL MUTATED        8      2      6
  FRYL WILD-TYPE    113    106     66
D621V9, multiclass
        clus
vv       FRYL MUTATED FRYL WILD-TYPE
  CLUS_1            8            113
  CLUS_2            2            106
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FRYL MUTATED        3      1      6      2      4
  FRYL WILD-TYPE     85     65     39     53     43
D621V10, multiclass
        clus
vv       FRYL MUTATED FRYL WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            6             39
  CLUS_4            2             53
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(622) Variable = MYCN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYCN MUTATED        1      6      0      0
  MYCN WILD-TYPE    203    131     47      3
D622V1, multiclass
        clus
vv       MYCN MUTATED MYCN WILD-TYPE
  CLUS_1            1            203
  CLUS_2            6            131
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYCN MUTATED        0      5      1      0      1
  MYCN WILD-TYPE     39     91     43     88     79
D622V2, multiclass
        clus
vv       MYCN MUTATED MYCN WILD-TYPE
  CLUS_1            0             39
  CLUS_2            5             91
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYCN MUTATED        0      2      3      0      2
  MYCN WILD-TYPE     26     77     70     82     56
D622V3, multiclass
        clus
vv       MYCN MUTATED MYCN WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYCN MUTATED        1      4      1      1
  MYCN WILD-TYPE    126     47     70     68
D622V4, multiclass
        clus
vv       MYCN MUTATED MYCN WILD-TYPE
  CLUS_1            1            126
  CLUS_2            4             47
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYCN MUTATED        0      1      1      1      4
  MYCN WILD-TYPE     84     84     84     68     43
D622V5, multiclass
        clus
vv       MYCN MUTATED MYCN WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            1             84
  CLUS_4            1             68
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYCN MUTATED        1      1      1      4
  MYCN WILD-TYPE     94     73    120     76
D622V6, multiclass
        clus
vv       MYCN MUTATED MYCN WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYCN MUTATED        3      2      1      0      1      0
  MYCN WILD-TYPE     49     62     71    104     39     59
D622V7, multiclass
        clus
vv       MYCN MUTATED MYCN WILD-TYPE
  CLUS_1            3             49
  CLUS_2            2             62
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYCN MUTATED        6      1      0
  MYCN WILD-TYPE    211     74     99
D622V8, multiclass
        clus
vv       MYCN MUTATED MYCN WILD-TYPE
  CLUS_1            6            211
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MYCN MUTATED        4      0      3
  MYCN WILD-TYPE    117    108     69
D622V9, multiclass
        clus
vv       MYCN MUTATED MYCN WILD-TYPE
  CLUS_1            4            117
  CLUS_2            0            108
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYCN MUTATED        2      0      1      0      4
  MYCN WILD-TYPE     86     66     44     55     43
D622V10, multiclass
        clus
vv       MYCN MUTATED MYCN WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(623) Variable = TNK2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNK2 MUTATED        2     13      3      0
  TNK2 WILD-TYPE    202    124     44      3
D623V1, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            2            202
  CLUS_2           13            124
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNK2 MUTATED        4     10      2      0      0
  TNK2 WILD-TYPE     35     86     42     88     80
D623V2, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            4             35
  CLUS_2           10             86
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNK2 MUTATED        3      4      5      0      3
  TNK2 WILD-TYPE     23     75     68     82     55
D623V3, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            3             23
  CLUS_2            4             75
  CLUS_3            5             68
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNK2 MUTATED        4      6      4      1
  TNK2 WILD-TYPE    123     45     67     68
D623V4, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            4            123
  CLUS_2            6             45
  CLUS_3            4             67
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNK2 MUTATED        2      2     10      2      1
  TNK2 WILD-TYPE     82     83     75     67     46
D623V5, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            2             83
  CLUS_3           10             75
  CLUS_4            2             67
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNK2 MUTATED        6      1      1      9
  TNK2 WILD-TYPE     89     73    120     71
D623V6, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            6             89
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            9             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNK2 MUTATED        5      2      4      3      3      1
  TNK2 WILD-TYPE     47     62     68    101     37     58
D623V7, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            5             47
  CLUS_2            2             62
  CLUS_3            4             68
  CLUS_4            3            101
  CLUS_5            3             37
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNK2 MUTATED       14      1      3
  TNK2 WILD-TYPE    203     74     96
D623V8, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1           14            203
  CLUS_2            1             74
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TNK2 MUTATED       10      2      1
  TNK2 WILD-TYPE    111    106     71
D623V9, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1           10            111
  CLUS_2            2            106
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNK2 MUTATED        8      1      0      0      4
  TNK2 WILD-TYPE     80     65     45     55     43
D623V10, multiclass
        clus
vv       TNK2 MUTATED TNK2 WILD-TYPE
  CLUS_1            8             80
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(624) Variable = C2ORF42 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF42 MUTATED        5      5      1      0
  C2ORF42 WILD-TYPE    199    132     46      3
D624V1, multiclass
        clus
vv       C2ORF42 MUTATED C2ORF42 WILD-TYPE
  CLUS_1               5               199
  CLUS_2               5               132
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C2ORF42 MUTATED        0      5      1      2      0
  C2ORF42 WILD-TYPE     39     91     43     86     80
D624V2, multiclass
        clus
vv       C2ORF42 MUTATED C2ORF42 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               5                91
  CLUS_3               1                43
  CLUS_4               2                86
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C2ORF42 MUTATED        0      5      3      1      2
  C2ORF42 WILD-TYPE     26     74     70     81     56
D624V3, multiclass
        clus
vv       C2ORF42 MUTATED C2ORF42 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               5                74
  CLUS_3               3                70
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF42 MUTATED        3      3      3      2
  C2ORF42 WILD-TYPE    124     48     68     67
D624V4, multiclass
        clus
vv       C2ORF42 MUTATED C2ORF42 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               3                48
  CLUS_3               3                68
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C2ORF42 MUTATED        1      3      6      1      1
  C2ORF42 WILD-TYPE     83     82     79     68     46
D624V5, multiclass
        clus
vv       C2ORF42 MUTATED C2ORF42 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               3                82
  CLUS_3               6                79
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF42 MUTATED        3      2      2      5
  C2ORF42 WILD-TYPE     92     72    119     75
D624V6, multiclass
        clus
vv       C2ORF42 MUTATED C2ORF42 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               2                72
  CLUS_3               2               119
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C2ORF42 MUTATED        1      5      3      2      0      1
  C2ORF42 WILD-TYPE     51     59     69    102     40     58
D624V7, multiclass
        clus
vv       C2ORF42 MUTATED C2ORF42 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               5                59
  CLUS_3               3                69
  CLUS_4               2               102
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF42 MUTATED       10      1      1
  C2ORF42 WILD-TYPE    207     74     98
D624V8, multiclass
        clus
vv       C2ORF42 MUTATED C2ORF42 WILD-TYPE
  CLUS_1              10               207
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF42 MUTATED        2      3      1
  C2ORF42 WILD-TYPE    119    105     71
D624V9, multiclass
        clus
vv       C2ORF42 MUTATED C2ORF42 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               3               105
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C2ORF42 MUTATED        0      2      1      1      2
  C2ORF42 WILD-TYPE     88     64     44     54     45
D624V10, multiclass
        clus
vv       C2ORF42 MUTATED C2ORF42 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               2                64
  CLUS_3               1                44
  CLUS_4               1                54
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(625) Variable = ADCY10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADCY10 MUTATED        7     12      1      0
  ADCY10 WILD-TYPE    197    125     46      3
D625V1, multiclass
        clus
vv       ADCY10 MUTATED ADCY10 WILD-TYPE
  CLUS_1              7              197
  CLUS_2             12              125
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADCY10 MUTATED        1      9      1      3      2
  ADCY10 WILD-TYPE     38     87     43     85     78
D625V2, multiclass
        clus
vv       ADCY10 MUTATED ADCY10 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              9               87
  CLUS_3              1               43
  CLUS_4              3               85
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADCY10 MUTATED        1      6      5      2      2
  ADCY10 WILD-TYPE     25     73     68     80     56
D625V3, multiclass
        clus
vv       ADCY10 MUTATED ADCY10 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              6               73
  CLUS_3              5               68
  CLUS_4              2               80
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADCY10 MUTATED        3      9      3      1
  ADCY10 WILD-TYPE    124     42     68     68
D625V4, multiclass
        clus
vv       ADCY10 MUTATED ADCY10 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              9               42
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADCY10 MUTATED        4      4      6      2      3
  ADCY10 WILD-TYPE     80     81     79     67     44
D625V5, multiclass
        clus
vv       ADCY10 MUTATED ADCY10 WILD-TYPE
  CLUS_1              4               80
  CLUS_2              4               81
  CLUS_3              6               79
  CLUS_4              2               67
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADCY10 MUTATED        7      2      4      6
  ADCY10 WILD-TYPE     88     72    117     74
D625V6, multiclass
        clus
vv       ADCY10 MUTATED ADCY10 WILD-TYPE
  CLUS_1              7               88
  CLUS_2              2               72
  CLUS_3              4              117
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADCY10 MUTATED        4      5      5      3      1      2
  ADCY10 WILD-TYPE     48     59     67    101     39     57
D625V7, multiclass
        clus
vv       ADCY10 MUTATED ADCY10 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              5               59
  CLUS_3              5               67
  CLUS_4              3              101
  CLUS_5              1               39
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADCY10 MUTATED       13      2      5
  ADCY10 WILD-TYPE    204     73     94
D625V8, multiclass
        clus
vv       ADCY10 MUTATED ADCY10 WILD-TYPE
  CLUS_1             13              204
  CLUS_2              2               73
  CLUS_3              5               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ADCY10 MUTATED        8      5      2
  ADCY10 WILD-TYPE    113    103     70
D625V9, multiclass
        clus
vv       ADCY10 MUTATED ADCY10 WILD-TYPE
  CLUS_1              8              113
  CLUS_2              5              103
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADCY10 MUTATED        5      2      2      2      4
  ADCY10 WILD-TYPE     83     64     43     53     43
D625V10, multiclass
        clus
vv       ADCY10 MUTATED ADCY10 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              2               64
  CLUS_3              2               43
  CLUS_4              2               53
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(626) Variable = QRFPR MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  QRFPR MUTATED        4      7      1      0
  QRFPR WILD-TYPE    200    130     46      3
D626V1, multiclass
        clus
vv       QRFPR MUTATED QRFPR WILD-TYPE
  CLUS_1             4             200
  CLUS_2             7             130
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  QRFPR MUTATED        1      5      1      1      0
  QRFPR WILD-TYPE     38     91     43     87     80
D626V2, multiclass
        clus
vv       QRFPR MUTATED QRFPR WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  QRFPR MUTATED        0      4      5      0      2
  QRFPR WILD-TYPE     26     75     68     82     56
D626V3, multiclass
        clus
vv       QRFPR MUTATED QRFPR WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             5              68
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  QRFPR MUTATED        5      3      2      1
  QRFPR WILD-TYPE    122     48     69     68
D626V4, multiclass
        clus
vv       QRFPR MUTATED QRFPR WILD-TYPE
  CLUS_1             5             122
  CLUS_2             3              48
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  QRFPR MUTATED        2      1      2      3      3
  QRFPR WILD-TYPE     82     84     83     66     44
D626V5, multiclass
        clus
vv       QRFPR MUTATED QRFPR WILD-TYPE
  CLUS_1             2              82
  CLUS_2             1              84
  CLUS_3             2              83
  CLUS_4             3              66
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  QRFPR MUTATED        5      1      2      3
  QRFPR WILD-TYPE     90     73    119     77
D626V6, multiclass
        clus
vv       QRFPR MUTATED QRFPR WILD-TYPE
  CLUS_1             5              90
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  QRFPR MUTATED        3      6      2      0      0      1
  QRFPR WILD-TYPE     49     58     70    104     40     58
D626V7, multiclass
        clus
vv       QRFPR MUTATED QRFPR WILD-TYPE
  CLUS_1             3              49
  CLUS_2             6              58
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  QRFPR MUTATED       10      0      2
  QRFPR WILD-TYPE    207     75     97
D626V8, multiclass
        clus
vv       QRFPR MUTATED QRFPR WILD-TYPE
  CLUS_1            10             207
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  QRFPR MUTATED        5      0      3
  QRFPR WILD-TYPE    116    108     69
D626V9, multiclass
        clus
vv       QRFPR MUTATED QRFPR WILD-TYPE
  CLUS_1             5             116
  CLUS_2             0             108
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  QRFPR MUTATED        2      0      1      1      4
  QRFPR WILD-TYPE     86     66     44     54     43
D626V10, multiclass
        clus
vv       QRFPR MUTATED QRFPR WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(627) Variable = C19ORF26 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF26 MUTATED        3      7      0      0
  C19ORF26 WILD-TYPE    201    130     47      3
D627V1, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                3                201
  CLUS_2                7                130
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF26 MUTATED        0      5      0      2      1
  C19ORF26 WILD-TYPE     39     91     44     86     79
D627V2, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                5                 91
  CLUS_3                0                 44
  CLUS_4                2                 86
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF26 MUTATED        1      2      3      2      0
  C19ORF26 WILD-TYPE     25     77     70     80     58
D627V3, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                2                 77
  CLUS_3                3                 70
  CLUS_4                2                 80
  CLUS_5                0                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF26 MUTATED        3      3      1      1
  C19ORF26 WILD-TYPE    124     48     70     68
D627V4, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                3                124
  CLUS_2                3                 48
  CLUS_3                1                 70
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF26 MUTATED        0      4      5      0      1
  C19ORF26 WILD-TYPE     84     81     80     69     46
D627V5, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                4                 81
  CLUS_3                5                 80
  CLUS_4                0                 69
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C19ORF26 MUTATED        2      3      2      3
  C19ORF26 WILD-TYPE     93     71    119     77
D627V6, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                3                 71
  CLUS_3                2                119
  CLUS_4                3                 77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C19ORF26 MUTATED        1      4      0      2      1      2
  C19ORF26 WILD-TYPE     51     60     72    102     39     57
D627V7, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                4                 60
  CLUS_3                0                 72
  CLUS_4                2                102
  CLUS_5                1                 39
  CLUS_6                2                 57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF26 MUTATED        6      1      3
  C19ORF26 WILD-TYPE    211     74     96
D627V8, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                6                211
  CLUS_2                1                 74
  CLUS_3                3                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C19ORF26 MUTATED        1      4      3
  C19ORF26 WILD-TYPE    120    104     69
D627V9, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                1                120
  CLUS_2                4                104
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C19ORF26 MUTATED        1      1      2      3      1
  C19ORF26 WILD-TYPE     87     65     43     52     46
D627V10, multiclass
        clus
vv       C19ORF26 MUTATED C19ORF26 WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                1                 65
  CLUS_3                2                 43
  CLUS_4                3                 52
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(628) Variable = SPANXC MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXC MUTATED        1      5      2      0
  SPANXC WILD-TYPE    203    132     45      3
D628V1, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              1              203
  CLUS_2              5              132
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPANXC MUTATED        0      4      1      0      0
  SPANXC WILD-TYPE     39     92     43     88     80
D628V2, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPANXC MUTATED        0      3      2      0      1
  SPANXC WILD-TYPE     26     76     71     82     57
D628V3, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXC MUTATED        0      4      2      0
  SPANXC WILD-TYPE    127     47     69     69
D628V4, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              0              127
  CLUS_2              4               47
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPANXC MUTATED        0      0      6      0      2
  SPANXC WILD-TYPE     84     85     79     69     45
D628V5, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              6               79
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPANXC MUTATED        1      0      0      7
  SPANXC WILD-TYPE     94     74    121     73
D628V6, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              1               94
  CLUS_2              0               74
  CLUS_3              0              121
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPANXC MUTATED        2      3      3      0      0      0
  SPANXC WILD-TYPE     50     61     69    104     40     59
D628V7, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              2               50
  CLUS_2              3               61
  CLUS_3              3               69
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPANXC MUTATED        7      0      1
  SPANXC WILD-TYPE    210     75     98
D628V8, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              7              210
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPANXC MUTATED        1      0      2
  SPANXC WILD-TYPE    120    108     70
D628V9, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              1              120
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPANXC MUTATED        1      0      0      0      2
  SPANXC WILD-TYPE     87     66     45     55     45
D628V10, multiclass
        clus
vv       SPANXC MUTATED SPANXC WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              0               45
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(629) Variable = XRN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRN1 MUTATED        6     17      1      0
  XRN1 WILD-TYPE    198    120     46      3
D629V1, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            6            198
  CLUS_2           17            120
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XRN1 MUTATED        0     10      2      2      2
  XRN1 WILD-TYPE     39     86     42     86     78
D629V2, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2           10             86
  CLUS_3            2             42
  CLUS_4            2             86
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XRN1 MUTATED        2      9      4      2      5
  XRN1 WILD-TYPE     24     70     69     80     53
D629V3, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            9             70
  CLUS_3            4             69
  CLUS_4            2             80
  CLUS_5            5             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRN1 MUTATED        8      8      4      2
  XRN1 WILD-TYPE    119     43     67     67
D629V4, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            8            119
  CLUS_2            8             43
  CLUS_3            4             67
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XRN1 MUTATED        3      2      9      6      3
  XRN1 WILD-TYPE     81     83     76     63     44
D629V5, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            3             81
  CLUS_2            2             83
  CLUS_3            9             76
  CLUS_4            6             63
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRN1 MUTATED       10      2      6      5
  XRN1 WILD-TYPE     85     72    115     75
D629V6, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1           10             85
  CLUS_2            2             72
  CLUS_3            6            115
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XRN1 MUTATED        5     10      1      4      1      3
  XRN1 WILD-TYPE     47     54     71    100     39     56
D629V7, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            5             47
  CLUS_2           10             54
  CLUS_3            1             71
  CLUS_4            4            100
  CLUS_5            1             39
  CLUS_6            3             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XRN1 MUTATED       16      2      6
  XRN1 WILD-TYPE    201     73     93
D629V8, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1           16            201
  CLUS_2            2             73
  CLUS_3            6             93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  XRN1 MUTATED        3      3      7
  XRN1 WILD-TYPE    118    105     65
D629V9, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            3            105
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XRN1 MUTATED        4      1      3      2      3
  XRN1 WILD-TYPE     84     65     42     53     44
D629V10, multiclass
        clus
vv       XRN1 MUTATED XRN1 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            1             65
  CLUS_3            3             42
  CLUS_4            2             53
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(630) Variable = SORBS2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORBS2 MUTATED        3     16      2      0
  SORBS2 WILD-TYPE    201    121     45      3
D630V1, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             16              121
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SORBS2 MUTATED        5      9      0      0      4
  SORBS2 WILD-TYPE     34     87     44     88     76
D630V2, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              5               34
  CLUS_2              9               87
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              4               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SORBS2 MUTATED        4      2      6      2      2
  SORBS2 WILD-TYPE     22     77     67     80     56
D630V3, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              4               22
  CLUS_2              2               77
  CLUS_3              6               67
  CLUS_4              2               80
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORBS2 MUTATED        4      8      2      2
  SORBS2 WILD-TYPE    123     43     69     67
D630V4, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              8               43
  CLUS_3              2               69
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SORBS2 MUTATED        3      3      9      4      2
  SORBS2 WILD-TYPE     81     82     76     65     45
D630V5, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              3               81
  CLUS_2              3               82
  CLUS_3              9               76
  CLUS_4              4               65
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SORBS2 MUTATED        6      3      3      9
  SORBS2 WILD-TYPE     89     71    118     71
D630V6, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              6               89
  CLUS_2              3               71
  CLUS_3              3              118
  CLUS_4              9               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SORBS2 MUTATED        7      6      3      2      2      1
  SORBS2 WILD-TYPE     45     58     69    102     38     58
D630V7, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              7               45
  CLUS_2              6               58
  CLUS_3              3               69
  CLUS_4              2              102
  CLUS_5              2               38
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED       17      2      2
  SORBS2 WILD-TYPE    200     73     97
D630V8, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1             17              200
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SORBS2 MUTATED       10      1      5
  SORBS2 WILD-TYPE    111    107     67
D630V9, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1             10              111
  CLUS_2              1              107
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SORBS2 MUTATED        5      1      3      1      6
  SORBS2 WILD-TYPE     83     65     42     54     41
D630V10, multiclass
        clus
vv       SORBS2 MUTATED SORBS2 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              1               65
  CLUS_3              3               42
  CLUS_4              1               54
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(631) Variable = LRP12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP12 MUTATED        5     21      4      0
  LRP12 WILD-TYPE    199    116     43      3
D631V1, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1             5             199
  CLUS_2            21             116
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP12 MUTATED        3     13      2      5      3
  LRP12 WILD-TYPE     36     83     42     83     77
D631V2, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1             3              36
  CLUS_2            13              83
  CLUS_3             2              42
  CLUS_4             5              83
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP12 MUTATED        3      6      9      1      5
  LRP12 WILD-TYPE     23     73     64     81     53
D631V3, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             6              73
  CLUS_3             9              64
  CLUS_4             1              81
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP12 MUTATED        9     11      2      2
  LRP12 WILD-TYPE    118     40     69     67
D631V4, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1             9             118
  CLUS_2            11              40
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP12 MUTATED        3      6      9      5      4
  LRP12 WILD-TYPE     81     79     76     64     43
D631V5, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             6              79
  CLUS_3             9              76
  CLUS_4             5              64
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP12 MUTATED        8      4      3     12
  LRP12 WILD-TYPE     87     70    118     68
D631V6, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1             8              87
  CLUS_2             4              70
  CLUS_3             3             118
  CLUS_4            12              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRP12 MUTATED        8      7      8      1      5      1
  LRP12 WILD-TYPE     44     57     64    103     35     58
D631V7, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1             8              44
  CLUS_2             7              57
  CLUS_3             8              64
  CLUS_4             1             103
  CLUS_5             5              35
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRP12 MUTATED       21      1      8
  LRP12 WILD-TYPE    196     74     91
D631V8, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1            21             196
  CLUS_2             1              74
  CLUS_3             8              91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRP12 MUTATED       12      4      6
  LRP12 WILD-TYPE    109    104     66
D631V9, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1            12             109
  CLUS_2             4             104
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP12 MUTATED        8      2      3      0      9
  LRP12 WILD-TYPE     80     64     42     55     38
D631V10, multiclass
        clus
vv       LRP12 MUTATED LRP12 WILD-TYPE
  CLUS_1             8              80
  CLUS_2             2              64
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             9              38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(632) Variable = KIF13A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF13A MUTATED        0     16      2      0
  KIF13A WILD-TYPE    204    121     45      3
D632V1, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              0              204
  CLUS_2             16              121
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF13A MUTATED        0     10      3      0      1
  KIF13A WILD-TYPE     39     86     41     88     79
D632V2, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              0               39
  CLUS_2             10               86
  CLUS_3              3               41
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF13A MUTATED        1      5      6      2      4
  KIF13A WILD-TYPE     25     74     67     80     54
D632V3, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              1               25
  CLUS_2              5               74
  CLUS_3              6               67
  CLUS_4              2               80
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF13A MUTATED        3     11      1      3
  KIF13A WILD-TYPE    124     40     70     66
D632V4, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              3              124
  CLUS_2             11               40
  CLUS_3              1               70
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF13A MUTATED        0      3     13      0      3
  KIF13A WILD-TYPE     84     82     72     69     44
D632V5, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3             13               72
  CLUS_4              0               69
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF13A MUTATED        2      6      2      9
  KIF13A WILD-TYPE     93     68    119     71
D632V6, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              2               93
  CLUS_2              6               68
  CLUS_3              2              119
  CLUS_4              9               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIF13A MUTATED        3      8      4      3      1      0
  KIF13A WILD-TYPE     49     56     68    101     39     59
D632V7, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              3               49
  CLUS_2              8               56
  CLUS_3              4               68
  CLUS_4              3              101
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF13A MUTATED       15      3      1
  KIF13A WILD-TYPE    202     72     98
D632V8, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1             15              202
  CLUS_2              3               72
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF13A MUTATED        4      1      6
  KIF13A WILD-TYPE    117    107     66
D632V9, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              4              117
  CLUS_2              1              107
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF13A MUTATED        3      1      3      0      4
  KIF13A WILD-TYPE     85     65     42     55     43
D632V10, multiclass
        clus
vv       KIF13A MUTATED KIF13A WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(633) Variable = C6 MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6 MUTATED        4      7      0      0
  C6 WILD-TYPE    200    130     47      3
D633V1, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          4          200
  CLUS_2          7          130
  CLUS_3          0           47
  CLUS_4          0            3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6 MUTATED        1      3      2      2      1
  C6 WILD-TYPE     38     93     42     86     79
D633V2, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          1           38
  CLUS_2          3           93
  CLUS_3          2           42
  CLUS_4          2           86
  CLUS_5          1           79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6 MUTATED        0      5      2      0      3
  C6 WILD-TYPE     26     74     71     82     55
D633V3, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          0           26
  CLUS_2          5           74
  CLUS_3          2           71
  CLUS_4          0           82
  CLUS_5          3           55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6 MUTATED        2      6      1      1
  C6 WILD-TYPE    125     45     70     68
D633V4, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          2          125
  CLUS_2          6           45
  CLUS_3          1           70
  CLUS_4          1           68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6 MUTATED        2      0      6      1      2
  C6 WILD-TYPE     82     85     79     68     45
D633V5, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          2           82
  CLUS_2          0           85
  CLUS_3          6           79
  CLUS_4          1           68
  CLUS_5          2           45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C6 MUTATED        2      1      2      6
  C6 WILD-TYPE     93     73    119     74
D633V6, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          2           93
  CLUS_2          1           73
  CLUS_3          2          119
  CLUS_4          6           74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C6 MUTATED        3      4      2      1      0      1
  C6 WILD-TYPE     49     60     70    103     40     58
D633V7, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          3           49
  CLUS_2          4           60
  CLUS_3          2           70
  CLUS_4          1          103
  CLUS_5          0           40
  CLUS_6          1           58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  C6 MUTATED        9      0      2
  C6 WILD-TYPE    208     75     97
D633V8, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          9          208
  CLUS_2          0           75
  CLUS_3          2           97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  C6 MUTATED        4      2      2
  C6 WILD-TYPE    117    106     70
D633V9, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          4          117
  CLUS_2          2          106
  CLUS_3          2           70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C6 MUTATED        3      0      2      2      1
  C6 WILD-TYPE     85     66     43     53     46
D633V10, multiclass
        clus
vv       C6 MUTATED C6 WILD-TYPE
  CLUS_1          3           85
  CLUS_2          0           66
  CLUS_3          2           43
  CLUS_4          2           53
  CLUS_5          1           46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(634) Variable = HIVEP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP3 MUTATED        7     21      2      0
  HIVEP3 WILD-TYPE    197    116     45      3
D634V1, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1              7              197
  CLUS_2             21              116
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP3 MUTATED        1     12      8      3      3
  HIVEP3 WILD-TYPE     38     84     36     85     77
D634V2, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1              1               38
  CLUS_2             12               84
  CLUS_3              8               36
  CLUS_4              3               85
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP3 MUTATED        4      7      9      1      4
  HIVEP3 WILD-TYPE     22     72     64     81     54
D634V3, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1              4               22
  CLUS_2              7               72
  CLUS_3              9               64
  CLUS_4              1               81
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP3 MUTATED       11      8      3      3
  HIVEP3 WILD-TYPE    116     43     68     66
D634V4, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1             11              116
  CLUS_2              8               43
  CLUS_3              3               68
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP3 MUTATED        2      5     16      5      1
  HIVEP3 WILD-TYPE     82     80     69     64     46
D634V5, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              5               80
  CLUS_3             16               69
  CLUS_4              5               64
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP3 MUTATED        7      7      6      9
  HIVEP3 WILD-TYPE     88     67    115     71
D634V6, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1              7               88
  CLUS_2              7               67
  CLUS_3              6              115
  CLUS_4              9               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIVEP3 MUTATED        7      8      6      3      3      3
  HIVEP3 WILD-TYPE     45     56     66    101     37     56
D634V7, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1              7               45
  CLUS_2              8               56
  CLUS_3              6               66
  CLUS_4              3              101
  CLUS_5              3               37
  CLUS_6              3               56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP3 MUTATED       20      4      6
  HIVEP3 WILD-TYPE    197     71     93
D634V8, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1             20              197
  CLUS_2              4               71
  CLUS_3              6               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP3 MUTATED       10      3     12
  HIVEP3 WILD-TYPE    111    105     60
D634V9, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1             10              111
  CLUS_2              3              105
  CLUS_3             12               60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP3 MUTATED        8      1      7      1      8
  HIVEP3 WILD-TYPE     80     65     38     54     39
D634V10, multiclass
        clus
vv       HIVEP3 MUTATED HIVEP3 WILD-TYPE
  CLUS_1              8               80
  CLUS_2              1               65
  CLUS_3              7               38
  CLUS_4              1               54
  CLUS_5              8               39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(635) Variable = FAM123C MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM123C MUTATED        0     12      1      0
  FAM123C WILD-TYPE    204    125     46      3
D635V1, multiclass
        clus
vv       FAM123C MUTATED FAM123C WILD-TYPE
  CLUS_1               0               204
  CLUS_2              12               125
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM123C MUTATED        2      6      2      0      1
  FAM123C WILD-TYPE     37     90     42     88     79
D635V2, multiclass
        clus
vv       FAM123C MUTATED FAM123C WILD-TYPE
  CLUS_1               2                37
  CLUS_2               6                90
  CLUS_3               2                42
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM123C MUTATED        1      3      7      1      1
  FAM123C WILD-TYPE     25     76     66     81     57
D635V3, multiclass
        clus
vv       FAM123C MUTATED FAM123C WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                76
  CLUS_3               7                66
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM123C MUTATED        4      5      2      2
  FAM123C WILD-TYPE    123     46     69     67
D635V4, multiclass
        clus
vv       FAM123C MUTATED FAM123C WILD-TYPE
  CLUS_1               4               123
  CLUS_2               5                46
  CLUS_3               2                69
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM123C MUTATED        0      2      5      2      3
  FAM123C WILD-TYPE     84     83     80     67     44
D635V5, multiclass
        clus
vv       FAM123C MUTATED FAM123C WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3               5                80
  CLUS_4               2                67
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM123C MUTATED        3      1      2      6
  FAM123C WILD-TYPE     92     73    119     74
D635V6, multiclass
        clus
vv       FAM123C MUTATED FAM123C WILD-TYPE
  CLUS_1               3                92
  CLUS_2               1                73
  CLUS_3               2               119
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM123C MUTATED        3      6      1      1      2      0
  FAM123C WILD-TYPE     49     58     71    103     38     59
D635V7, multiclass
        clus
vv       FAM123C MUTATED FAM123C WILD-TYPE
  CLUS_1               3                49
  CLUS_2               6                58
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               2                38
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM123C MUTATED        9      1      3
  FAM123C WILD-TYPE    208     74     96
D635V8, multiclass
        clus
vv       FAM123C MUTATED FAM123C WILD-TYPE
  CLUS_1               9               208
  CLUS_2               1                74
  CLUS_3               3                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM123C MUTATED        3      1      6
  FAM123C WILD-TYPE    118    107     66
D635V9, multiclass
        clus
vv       FAM123C MUTATED FAM123C WILD-TYPE
  CLUS_1               3               118
  CLUS_2               1               107
  CLUS_3               6                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM123C MUTATED        3      1      3      0      3
  FAM123C WILD-TYPE     85     65     42     55     44
D635V10, multiclass
        clus
vv       FAM123C MUTATED FAM123C WILD-TYPE
  CLUS_1               3                85
  CLUS_2               1                65
  CLUS_3               3                42
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(636) Variable = EPHB6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHB6 MUTATED        3     12      2      0
  EPHB6 WILD-TYPE    201    125     45      3
D636V1, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            12             125
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHB6 MUTATED        2      9      3      1      0
  EPHB6 WILD-TYPE     37     87     41     87     80
D636V2, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             9              87
  CLUS_3             3              41
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHB6 MUTATED        0      9      3      1      2
  EPHB6 WILD-TYPE     26     70     70     81     56
D636V3, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             9              70
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHB6 MUTATED        1      6      7      1
  EPHB6 WILD-TYPE    126     45     64     68
D636V4, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             6              45
  CLUS_3             7              64
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHB6 MUTATED        1      1     12      0      1
  EPHB6 WILD-TYPE     83     84     73     69     46
D636V5, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3            12              73
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHB6 MUTATED        2      2      1     10
  EPHB6 WILD-TYPE     93     72    120     70
D636V6, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4            10              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHB6 MUTATED        3      6      4      2      1      1
  EPHB6 WILD-TYPE     49     58     68    102     39     58
D636V7, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             6              58
  CLUS_3             4              68
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHB6 MUTATED       14      2      1
  EPHB6 WILD-TYPE    203     73     98
D636V8, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHB6 MUTATED        6      1      6
  EPHB6 WILD-TYPE    115    107     66
D636V9, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHB6 MUTATED        5      1      2      0      5
  EPHB6 WILD-TYPE     83     65     43     55     42
D636V10, multiclass
        clus
vv       EPHB6 MUTATED EPHB6 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(637) Variable = PTPN13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN13 MUTATED        9     18      2      0
  PTPN13 WILD-TYPE    195    119     45      3
D637V1, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              9              195
  CLUS_2             18              119
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN13 MUTATED        4     13      6      2      3
  PTPN13 WILD-TYPE     35     83     38     86     77
D637V2, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              4               35
  CLUS_2             13               83
  CLUS_3              6               38
  CLUS_4              2               86
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN13 MUTATED        2     10      4      1      6
  PTPN13 WILD-TYPE     24     69     69     81     52
D637V3, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              2               24
  CLUS_2             10               69
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              6               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN13 MUTATED        6      9      7      1
  PTPN13 WILD-TYPE    121     42     64     68
D637V4, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              6              121
  CLUS_2              9               42
  CLUS_3              7               64
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN13 MUTATED        2      4     11      6      3
  PTPN13 WILD-TYPE     82     81     74     63     44
D637V5, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              4               81
  CLUS_3             11               74
  CLUS_4              6               63
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN13 MUTATED        8      3      5     10
  PTPN13 WILD-TYPE     87     71    116     70
D637V6, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              8               87
  CLUS_2              3               71
  CLUS_3              5              116
  CLUS_4             10               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPN13 MUTATED        6     12      5      3      2      1
  PTPN13 WILD-TYPE     46     52     67    101     38     58
D637V7, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              6               46
  CLUS_2             12               52
  CLUS_3              5               67
  CLUS_4              3              101
  CLUS_5              2               38
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN13 MUTATED       22      3      4
  PTPN13 WILD-TYPE    195     72     95
D637V8, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1             22              195
  CLUS_2              3               72
  CLUS_3              4               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN13 MUTATED       11      2     13
  PTPN13 WILD-TYPE    110    106     59
D637V9, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1             11              110
  CLUS_2              2              106
  CLUS_3             13               59
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN13 MUTATED        3      2      9      2     10
  PTPN13 WILD-TYPE     85     64     36     53     37
D637V10, multiclass
        clus
vv       PTPN13 MUTATED PTPN13 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              2               64
  CLUS_3              9               36
  CLUS_4              2               53
  CLUS_5             10               37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(638) Variable = CALCRL MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCRL MUTATED        6      3      1      0
  CALCRL WILD-TYPE    198    134     46      3
D638V1, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              6              198
  CLUS_2              3              134
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CALCRL MUTATED        3      3      1      0      0
  CALCRL WILD-TYPE     36     93     43     88     80
D638V2, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              3               36
  CLUS_2              3               93
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CALCRL MUTATED        0      4      0      1      4
  CALCRL WILD-TYPE     26     75     73     81     54
D638V3, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              0               73
  CLUS_4              1               81
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCRL MUTATED        1      5      0      3
  CALCRL WILD-TYPE    126     46     71     66
D638V4, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              1              126
  CLUS_2              5               46
  CLUS_3              0               71
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CALCRL MUTATED        1      1      4      1      2
  CALCRL WILD-TYPE     83     84     81     68     45
D638V5, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CALCRL MUTATED        3      2      2      2
  CALCRL WILD-TYPE     92     72    119     78
D638V6, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              3               92
  CLUS_2              2               72
  CLUS_3              2              119
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CALCRL MUTATED        1      5      1      2      1      0
  CALCRL WILD-TYPE     51     59     71    102     39     59
D638V7, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              1               51
  CLUS_2              5               59
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CALCRL MUTATED        7      3      0
  CALCRL WILD-TYPE    210     72     99
D638V8, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              7              210
  CLUS_2              3               72
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CALCRL MUTATED        3      2      2
  CALCRL WILD-TYPE    118    106     70
D638V9, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              3              118
  CLUS_2              2              106
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CALCRL MUTATED        2      1      2      0      2
  CALCRL WILD-TYPE     86     65     43     55     45
D638V10, multiclass
        clus
vv       CALCRL MUTATED CALCRL WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(639) Variable = AZGP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AZGP1 MUTATED        2      1      1      0
  AZGP1 WILD-TYPE    202    136     46      3
D639V1, multiclass
        clus
vv       AZGP1 MUTATED AZGP1 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             1             136
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AZGP1 MUTATED        0      3      0      1      0
  AZGP1 WILD-TYPE     39     93     44     87     80
D639V2, multiclass
        clus
vv       AZGP1 MUTATED AZGP1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AZGP1 MUTATED        0      1      2      0      1
  AZGP1 WILD-TYPE     26     78     71     82     57
D639V3, multiclass
        clus
vv       AZGP1 MUTATED AZGP1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AZGP1 MUTATED        1      3      0      0
  AZGP1 WILD-TYPE    126     48     71     69
D639V4, multiclass
        clus
vv       AZGP1 MUTATED AZGP1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             3              48
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AZGP1 MUTATED        1      0      3      0      0
  AZGP1 WILD-TYPE     83     85     82     69     47
D639V5, multiclass
        clus
vv       AZGP1 MUTATED AZGP1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AZGP1 MUTATED        0      0      1      3
  AZGP1 WILD-TYPE     95     74    120     77
D639V6, multiclass
        clus
vv       AZGP1 MUTATED AZGP1 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AZGP1 MUTATED        1      0      2      0      0      1
  AZGP1 WILD-TYPE     51     64     70    104     40     58
D639V7, multiclass
        clus
vv       AZGP1 MUTATED AZGP1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             0              64
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AZGP1 MUTATED        3      0      1
  AZGP1 WILD-TYPE    214     75     98
D639V8, multiclass
        clus
vv       AZGP1 MUTATED AZGP1 WILD-TYPE
  CLUS_1             3             214
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AZGP1 MUTATED        3      0      1
  AZGP1 WILD-TYPE    118    108     71
D639V9, multiclass
        clus
vv       AZGP1 MUTATED AZGP1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0             108
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AZGP1 MUTATED        0      0      0      1      3
  AZGP1 WILD-TYPE     88     66     45     54     44
D639V10, multiclass
        clus
vv       AZGP1 MUTATED AZGP1 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(640) Variable = DOK1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOK1 MUTATED        0      4      1      0
  DOK1 WILD-TYPE    204    133     46      3
D640V1, multiclass
        clus
vv       DOK1 MUTATED DOK1 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            4            133
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOK1 MUTATED        0      4      0      0      0
  DOK1 WILD-TYPE     39     92     44     88     80
D640V2, multiclass
        clus
vv       DOK1 MUTATED DOK1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOK1 MUTATED        0      0      3      0      2
  DOK1 WILD-TYPE     26     79     70     82     56
D640V3, multiclass
        clus
vv       DOK1 MUTATED DOK1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             79
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOK1 MUTATED        1      4      0      0
  DOK1 WILD-TYPE    126     47     71     69
D640V4, multiclass
        clus
vv       DOK1 MUTATED DOK1 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            4             47
  CLUS_3            0             71
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOK1 MUTATED        0      0      3      1      1
  DOK1 WILD-TYPE     84     85     82     68     46
D640V5, multiclass
        clus
vv       DOK1 MUTATED DOK1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            3             82
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DOK1 MUTATED        2      0      0      3
  DOK1 WILD-TYPE     93     74    121     77
D640V6, multiclass
        clus
vv       DOK1 MUTATED DOK1 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            0             74
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DOK1 MUTATED        1      2      2      0      0      0
  DOK1 WILD-TYPE     51     62     70    104     40     59
D640V7, multiclass
        clus
vv       DOK1 MUTATED DOK1 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            2             62
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DOK1 MUTATED        5      0      0
  DOK1 WILD-TYPE    212     75     99
D640V8, multiclass
        clus
vv       DOK1 MUTATED DOK1 WILD-TYPE
  CLUS_1            5            212
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DOK1 MUTATED        1      0      1
  DOK1 WILD-TYPE    120    108     71
D640V9, multiclass
[1] "Remove cluster labels:" "DOK1 MUTATED"          
clus
  DOK1 MUTATED DOK1 WILD-TYPE 
             2            299 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6453     TCGA-BR-6454 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457     TCGA-BR-6458 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6709 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-7704     TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7717 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8060     TCGA-BR-8077     TCGA-BR-8078     TCGA-BR-8080 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8360     TCGA-BR-8361 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8368 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485     TCGA-BR-8486 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590     TCGA-BR-8591 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A452 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR     TCGA-BR-A4CS 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-A4J1     TCGA-BR-A4J5     TCGA-BR-A4J6     TCGA-BR-A4J7 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI     TCGA-BR-A4QM 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800     TCGA-CD-5801 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804     TCGA-CD-5813 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8527 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CD-8533     TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48C 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5716     TCGA-CG-5717 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8574 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-8575     TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-A4YT     TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YY 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-D7-A6ET     TCGA-D7-A6EV     TCGA-D7-A6EX 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-A6EY     TCGA-D7-A6EZ     TCGA-D7-A6F0     TCGA-D7-A6F2 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-A747     TCGA-D7-A748     TCGA-D7-A74A     TCGA-D7-A74B 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE     TCGA-FP-A9TM 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7134     TCGA-HF-7136 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-HU-8238     TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GJ 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GX 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H4     TCGA-HU-A4H5 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-HU-A4H6     TCGA-HU-A4H8     TCGA-HU-A4HB     TCGA-IN-7806 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663     TCGA-IN-A6RI 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-IN-A6RJ     TCGA-IN-A6RL     TCGA-IN-A6RN     TCGA-IN-A6RP 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-IN-A7NR     TCGA-IN-A7NT     TCGA-IN-A7NU     TCGA-IN-AB1V 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-IN-AB1X     TCGA-IP-7968     TCGA-KB-A6F5     TCGA-KB-A6F7 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-KB-A93J     TCGA-MX-A5UG     TCGA-MX-A5UJ     TCGA-MX-A663 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-MX-A666     TCGA-R5-A7O7     TCGA-R5-A7ZE     TCGA-R5-A7ZF 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-R5-A7ZI     TCGA-R5-A7ZR     TCGA-R5-A804     TCGA-R5-A805 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-RD-A7BS     TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-RD-A8N5 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-RD-A8N6     TCGA-RD-A8N9     TCGA-SW-A7EA     TCGA-SW-A7EB 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-VQ-A8DL     TCGA-VQ-A8DU     TCGA-VQ-A8DV     TCGA-VQ-A8E2 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3     TCGA-VQ-A8PE 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ     TCGA-VQ-A91Q 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-A94T 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-VQ-AA64     TCGA-VQ-AA68     TCGA-VQ-AA69     TCGA-VQ-AA6A 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-VQ-AA6B     TCGA-VQ-AA6F     TCGA-VQ-AA6G     TCGA-VQ-AA6I 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-VQ-AA6J     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DOK1 MUTATED        0      0      1      0      1
  DOK1 WILD-TYPE     88     66     44     55     46
D640V10, multiclass
[1] "Remove cluster labels:" "DOK1 MUTATED"          
clus
  DOK1 MUTATED DOK1 WILD-TYPE 
             2            299 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6453     TCGA-BR-6454 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457     TCGA-BR-6458 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6709 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-7704     TCGA-BR-7707     TCGA-BR-7715     TCGA-BR-7717 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8060     TCGA-BR-8077     TCGA-BR-8078     TCGA-BR-8080 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8360     TCGA-BR-8361 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8368 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485     TCGA-BR-8486 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590     TCGA-BR-8591 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A452 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR     TCGA-BR-A4CS 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-A4J1     TCGA-BR-A4J5     TCGA-BR-A4J6     TCGA-BR-A4J7 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI     TCGA-BR-A4QM 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800     TCGA-CD-5801 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804     TCGA-CD-5813 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8527 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CD-8533     TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48C 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5716     TCGA-CG-5717 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8574 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-8575     TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-A4YT     TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YY 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-D7-A6ET     TCGA-D7-A6EV     TCGA-D7-A6EX 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-A6EY     TCGA-D7-A6EZ     TCGA-D7-A6F0     TCGA-D7-A6F2 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-D7-A747     TCGA-D7-A748     TCGA-D7-A74A     TCGA-D7-A74B 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE     TCGA-FP-A9TM 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7134     TCGA-HF-7136 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-HU-8238     TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GJ 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GX 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H4     TCGA-HU-A4H5 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-HU-A4H6     TCGA-HU-A4H8     TCGA-HU-A4HB     TCGA-IN-7806 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663     TCGA-IN-A6RI 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-IN-A6RJ     TCGA-IN-A6RL     TCGA-IN-A6RN     TCGA-IN-A6RP 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-IN-A7NR     TCGA-IN-A7NT     TCGA-IN-A7NU     TCGA-IN-AB1V 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-IN-AB1X     TCGA-IP-7968     TCGA-KB-A6F5     TCGA-KB-A6F7 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-KB-A93J     TCGA-MX-A5UG     TCGA-MX-A5UJ     TCGA-MX-A663 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-MX-A666     TCGA-R5-A7O7     TCGA-R5-A7ZE     TCGA-R5-A7ZF 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-R5-A7ZI     TCGA-R5-A7ZR     TCGA-R5-A804     TCGA-R5-A805 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-RD-A7BS     TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-RD-A8N5 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-RD-A8N6     TCGA-RD-A8N9     TCGA-SW-A7EA     TCGA-SW-A7EB 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-VQ-A8DL     TCGA-VQ-A8DU     TCGA-VQ-A8DV     TCGA-VQ-A8E2 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3     TCGA-VQ-A8PE 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ     TCGA-VQ-A91Q 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-A94T 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-VQ-AA64     TCGA-VQ-AA68     TCGA-VQ-AA69     TCGA-VQ-AA6A 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-VQ-AA6B     TCGA-VQ-AA6F     TCGA-VQ-AA6G     TCGA-VQ-AA6I 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 
    TCGA-VQ-AA6J     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"DOK1 WILD-TYPE" "DOK1 WILD-TYPE" "DOK1 WILD-TYPE" 

Clustering(641) Variable = CDC5L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC5L MUTATED        2     11      2      0
  CDC5L WILD-TYPE    202    126     45      3
D641V1, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             2             202
  CLUS_2            11             126
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC5L MUTATED        1      6      2      2      1
  CDC5L WILD-TYPE     38     90     42     86     79
D641V2, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             2              42
  CLUS_4             2              86
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC5L MUTATED        0      5      3      1      2
  CDC5L WILD-TYPE     26     74     70     81     56
D641V3, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             0              26
  CLUS_2             5              74
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC5L MUTATED        2      6      2      1
  CDC5L WILD-TYPE    125     45     69     68
D641V4, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             2             125
  CLUS_2             6              45
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC5L MUTATED        2      4      8      1      0
  CDC5L WILD-TYPE     82     81     77     68     47
D641V5, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             2              82
  CLUS_2             4              81
  CLUS_3             8              77
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC5L MUTATED        2      5      2      6
  CDC5L WILD-TYPE     93     69    119     74
D641V6, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             2              93
  CLUS_2             5              69
  CLUS_3             2             119
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC5L MUTATED        5      5      1      3      0      2
  CDC5L WILD-TYPE     47     59     71    101     40     57
D641V7, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             5              47
  CLUS_2             5              59
  CLUS_3             1              71
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC5L MUTATED       12      2      2
  CDC5L WILD-TYPE    205     73     97
D641V8, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1            12             205
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDC5L MUTATED        7      2      3
  CDC5L WILD-TYPE    114    106     69
D641V9, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             7             114
  CLUS_2             2             106
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC5L MUTATED        4      2      2      1      3
  CDC5L WILD-TYPE     84     64     43     54     44
D641V10, multiclass
        clus
vv       CDC5L MUTATED CDC5L WILD-TYPE
  CLUS_1             4              84
  CLUS_2             2              64
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(642) Variable = KIF2B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF2B MUTATED       17     13      2      0
  KIF2B WILD-TYPE    187    124     45      3
D642V1, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1            17             187
  CLUS_2            13             124
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF2B MUTATED        6      8      4      6      6
  KIF2B WILD-TYPE     33     88     40     82     74
D642V2, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1             6              33
  CLUS_2             8              88
  CLUS_3             4              40
  CLUS_4             6              82
  CLUS_5             6              74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF2B MUTATED        3      7      8      3      4
  KIF2B WILD-TYPE     23     72     65     79     54
D642V3, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1             3              23
  CLUS_2             7              72
  CLUS_3             8              65
  CLUS_4             3              79
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF2B MUTATED       10      5      7      3
  KIF2B WILD-TYPE    117     46     64     66
D642V4, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1            10             117
  CLUS_2             5              46
  CLUS_3             7              64
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF2B MUTATED        7      4     10      6      4
  KIF2B WILD-TYPE     77     81     75     63     43
D642V5, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1             7              77
  CLUS_2             4              81
  CLUS_3            10              75
  CLUS_4             6              63
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF2B MUTATED       11      5      6      9
  KIF2B WILD-TYPE     84     69    115     71
D642V6, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1            11              84
  CLUS_2             5              69
  CLUS_3             6             115
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIF2B MUTATED        4      3      6      8      6      5
  KIF2B WILD-TYPE     48     61     66     96     34     54
D642V7, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1             4              48
  CLUS_2             3              61
  CLUS_3             6              66
  CLUS_4             8              96
  CLUS_5             6              34
  CLUS_6             5              54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF2B MUTATED       22      3      7
  KIF2B WILD-TYPE    195     72     92
D642V8, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1            22             195
  CLUS_2             3              72
  CLUS_3             7              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KIF2B MUTATED       12      7      7
  KIF2B WILD-TYPE    109    101     65
D642V9, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1            12             109
  CLUS_2             7             101
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF2B MUTATED        9      5      4      3      5
  KIF2B WILD-TYPE     79     61     41     52     42
D642V10, multiclass
        clus
vv       KIF2B MUTATED KIF2B WILD-TYPE
  CLUS_1             9              79
  CLUS_2             5              61
  CLUS_3             4              41
  CLUS_4             3              52
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(643) Variable = NOBOX MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOBOX MUTATED        0      9      1      0
  NOBOX WILD-TYPE    204    128     46      3
D643V1, multiclass
        clus
vv       NOBOX MUTATED NOBOX WILD-TYPE
  CLUS_1             0             204
  CLUS_2             9             128
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOBOX MUTATED        1      3      2      0      0
  NOBOX WILD-TYPE     38     93     42     88     80
D643V2, multiclass
        clus
vv       NOBOX MUTATED NOBOX WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOBOX MUTATED        0      4      2      1      3
  NOBOX WILD-TYPE     26     75     71     81     55
D643V3, multiclass
        clus
vv       NOBOX MUTATED NOBOX WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOBOX MUTATED        2      4      2      2
  NOBOX WILD-TYPE    125     47     69     67
D643V4, multiclass
        clus
vv       NOBOX MUTATED NOBOX WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOBOX MUTATED        0      4      4      1      0
  NOBOX WILD-TYPE     84     81     81     68     47
D643V5, multiclass
        clus
vv       NOBOX MUTATED NOBOX WILD-TYPE
  CLUS_1             0              84
  CLUS_2             4              81
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOBOX MUTATED        1      3      2      3
  NOBOX WILD-TYPE     94     71    119     77
D643V6, multiclass
        clus
vv       NOBOX MUTATED NOBOX WILD-TYPE
  CLUS_1             1              94
  CLUS_2             3              71
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOBOX MUTATED        2      4      3      1      0      0
  NOBOX WILD-TYPE     50     60     69    103     40     59
D643V7, multiclass
        clus
vv       NOBOX MUTATED NOBOX WILD-TYPE
  CLUS_1             2              50
  CLUS_2             4              60
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NOBOX MUTATED        8      1      1
  NOBOX WILD-TYPE    209     74     98
D643V8, multiclass
        clus
vv       NOBOX MUTATED NOBOX WILD-TYPE
  CLUS_1             8             209
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NOBOX MUTATED        4      1      1
  NOBOX WILD-TYPE    117    107     71
D643V9, multiclass
        clus
vv       NOBOX MUTATED NOBOX WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOBOX MUTATED        2      1      0      0      3
  NOBOX WILD-TYPE     86     65     45     55     44
D643V10, multiclass
        clus
vv       NOBOX MUTATED NOBOX WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(644) Variable = GPR45 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR45 MUTATED        6      8      2      0
  GPR45 WILD-TYPE    198    129     45      3
D644V1, multiclass
        clus
vv       GPR45 MUTATED GPR45 WILD-TYPE
  CLUS_1             6             198
  CLUS_2             8             129
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR45 MUTATED        0      8      1      2      2
  GPR45 WILD-TYPE     39     88     43     86     78
D644V2, multiclass
        clus
vv       GPR45 MUTATED GPR45 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             8              88
  CLUS_3             1              43
  CLUS_4             2              86
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR45 MUTATED        1      6      2      0      1
  GPR45 WILD-TYPE     25     73     71     82     57
D644V3, multiclass
        clus
vv       GPR45 MUTATED GPR45 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             6              73
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR45 MUTATED        3      5      2      0
  GPR45 WILD-TYPE    124     46     69     69
D644V4, multiclass
        clus
vv       GPR45 MUTATED GPR45 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR45 MUTATED        4      1      4      2      2
  GPR45 WILD-TYPE     80     84     81     67     45
D644V5, multiclass
        clus
vv       GPR45 MUTATED GPR45 WILD-TYPE
  CLUS_1             4              80
  CLUS_2             1              84
  CLUS_3             4              81
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR45 MUTATED        6      1      3      3
  GPR45 WILD-TYPE     89     73    118     77
D644V6, multiclass
        clus
vv       GPR45 MUTATED GPR45 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             1              73
  CLUS_3             3             118
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR45 MUTATED        4      3      4      2      0      3
  GPR45 WILD-TYPE     48     61     68    102     40     56
D644V7, multiclass
        clus
vv       GPR45 MUTATED GPR45 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             3              61
  CLUS_3             4              68
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR45 MUTATED       12      0      4
  GPR45 WILD-TYPE    205     75     95
D644V8, multiclass
        clus
vv       GPR45 MUTATED GPR45 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             0              75
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR45 MUTATED        6      2      4
  GPR45 WILD-TYPE    115    106     68
D644V9, multiclass
        clus
vv       GPR45 MUTATED GPR45 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR45 MUTATED        3      0      1      1      7
  GPR45 WILD-TYPE     85     66     44     54     40
D644V10, multiclass
        clus
vv       GPR45 MUTATED GPR45 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(645) Variable = ACTR8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTR8 MUTATED        1      8      1      0
  ACTR8 WILD-TYPE    203    129     46      3
D645V1, multiclass
        clus
vv       ACTR8 MUTATED ACTR8 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTR8 MUTATED        1      5      1      1      1
  ACTR8 WILD-TYPE     38     91     43     87     79
D645V2, multiclass
        clus
vv       ACTR8 MUTATED ACTR8 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTR8 MUTATED        0      2      3      1      4
  ACTR8 WILD-TYPE     26     77     70     81     54
D645V3, multiclass
        clus
vv       ACTR8 MUTATED ACTR8 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTR8 MUTATED        0      7      1      2
  ACTR8 WILD-TYPE    127     44     70     67
D645V4, multiclass
        clus
vv       ACTR8 MUTATED ACTR8 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             7              44
  CLUS_3             1              70
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTR8 MUTATED        1      3      5      0      1
  ACTR8 WILD-TYPE     83     82     80     69     46
D645V5, multiclass
        clus
vv       ACTR8 MUTATED ACTR8 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTR8 MUTATED        1      1      1      7
  ACTR8 WILD-TYPE     94     73    120     73
D645V6, multiclass
        clus
vv       ACTR8 MUTATED ACTR8 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACTR8 MUTATED        4      4      0      2      0      1
  ACTR8 WILD-TYPE     48     60     72    102     40     58
D645V7, multiclass
        clus
vv       ACTR8 MUTATED ACTR8 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             4              60
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTR8 MUTATED        8      1      2
  ACTR8 WILD-TYPE    209     74     97
D645V8, multiclass
        clus
vv       ACTR8 MUTATED ACTR8 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTR8 MUTATED        3      3      2
  ACTR8 WILD-TYPE    118    105     70
D645V9, multiclass
        clus
vv       ACTR8 MUTATED ACTR8 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             3             105
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTR8 MUTATED        2      1      2      1      2
  ACTR8 WILD-TYPE     86     65     43     54     45
D645V10, multiclass
        clus
vv       ACTR8 MUTATED ACTR8 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(646) Variable = SCAMP2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCAMP2 MUTATED        1      5      1      0
  SCAMP2 WILD-TYPE    203    132     46      3
D646V1, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              5              132
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCAMP2 MUTATED        1      2      1      0      1
  SCAMP2 WILD-TYPE     38     94     43     88     79
D646V2, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              2               94
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCAMP2 MUTATED        0      3      0      0      3
  SCAMP2 WILD-TYPE     26     76     73     82     55
D646V3, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              0               73
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCAMP2 MUTATED        1      2      3      0
  SCAMP2 WILD-TYPE    126     49     68     69
D646V4, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              3               68
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCAMP2 MUTATED        0      2      2      1      2
  SCAMP2 WILD-TYPE     84     83     83     68     45
D646V5, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              2               83
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCAMP2 MUTATED        2      1      0      4
  SCAMP2 WILD-TYPE     93     73    121     76
D646V6, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCAMP2 MUTATED        2      2      1      2      0      0
  SCAMP2 WILD-TYPE     50     62     71    102     40     59
D646V7, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCAMP2 MUTATED        7      0      0
  SCAMP2 WILD-TYPE    210     75     99
D646V8, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              7              210
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCAMP2 MUTATED        2      3      0
  SCAMP2 WILD-TYPE    119    105     72
D646V9, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              3              105
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCAMP2 MUTATED        3      0      0      0      2
  SCAMP2 WILD-TYPE     85     66     45     55     45
D646V10, multiclass
        clus
vv       SCAMP2 MUTATED SCAMP2 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              0               45
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(647) Variable = HMGCLL1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMGCLL1 MUTATED        5      3      2      0
  HMGCLL1 WILD-TYPE    199    134     45      3
D647V1, multiclass
        clus
vv       HMGCLL1 MUTATED HMGCLL1 WILD-TYPE
  CLUS_1               5               199
  CLUS_2               3               134
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMGCLL1 MUTATED        0      5      0      1      3
  HMGCLL1 WILD-TYPE     39     91     44     87     77
D647V2, multiclass
        clus
vv       HMGCLL1 MUTATED HMGCLL1 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               5                91
  CLUS_3               0                44
  CLUS_4               1                87
  CLUS_5               3                77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMGCLL1 MUTATED        1      4      1      2      1
  HMGCLL1 WILD-TYPE     25     75     72     80     57
D647V3, multiclass
        clus
vv       HMGCLL1 MUTATED HMGCLL1 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               4                75
  CLUS_3               1                72
  CLUS_4               2                80
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMGCLL1 MUTATED        6      1      1      1
  HMGCLL1 WILD-TYPE    121     50     70     68
D647V4, multiclass
        clus
vv       HMGCLL1 MUTATED HMGCLL1 WILD-TYPE
  CLUS_1               6               121
  CLUS_2               1                50
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMGCLL1 MUTATED        1      2      3      3      1
  HMGCLL1 WILD-TYPE     83     83     82     66     46
D647V5, multiclass
        clus
vv       HMGCLL1 MUTATED HMGCLL1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               2                83
  CLUS_3               3                82
  CLUS_4               3                66
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HMGCLL1 MUTATED        5      0      3      2
  HMGCLL1 WILD-TYPE     90     74    118     78
D647V6, multiclass
        clus
vv       HMGCLL1 MUTATED HMGCLL1 WILD-TYPE
  CLUS_1               5                90
  CLUS_2               0                74
  CLUS_3               3               118
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HMGCLL1 MUTATED        2      3      1      2      1      1
  HMGCLL1 WILD-TYPE     50     61     71    102     39     58
D647V7, multiclass
        clus
vv       HMGCLL1 MUTATED HMGCLL1 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               3                61
  CLUS_3               1                71
  CLUS_4               2               102
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HMGCLL1 MUTATED        7      1      2
  HMGCLL1 WILD-TYPE    210     74     97
D647V8, multiclass
        clus
vv       HMGCLL1 MUTATED HMGCLL1 WILD-TYPE
  CLUS_1               7               210
  CLUS_2               1                74
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HMGCLL1 MUTATED        1      2      3
  HMGCLL1 WILD-TYPE    120    106     69
D647V9, multiclass
        clus
vv       HMGCLL1 MUTATED HMGCLL1 WILD-TYPE
  CLUS_1               1               120
  CLUS_2               2               106
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HMGCLL1 MUTATED        1      0      2      2      1
  HMGCLL1 WILD-TYPE     87     66     43     53     46
D647V10, multiclass
        clus
vv       HMGCLL1 MUTATED HMGCLL1 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               2                43
  CLUS_4               2                53
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(648) Variable = COL11A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL11A1 MUTATED       16     19      5      0
  COL11A1 WILD-TYPE    188    118     42      3
D648V1, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1              16               188
  CLUS_2              19               118
  CLUS_3               5                42
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL11A1 MUTATED        5     18      2      5      6
  COL11A1 WILD-TYPE     34     78     42     83     74
D648V2, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               5                34
  CLUS_2              18                78
  CLUS_3               2                42
  CLUS_4               5                83
  CLUS_5               6                74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL11A1 MUTATED        2      9      8      6      8
  COL11A1 WILD-TYPE     24     70     65     76     50
D648V3, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               9                70
  CLUS_3               8                65
  CLUS_4               6                76
  CLUS_5               8                50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL11A1 MUTATED        6     14      7      6
  COL11A1 WILD-TYPE    121     37     64     63
D648V4, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               6               121
  CLUS_2              14                37
  CLUS_3               7                64
  CLUS_4               6                63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL11A1 MUTATED        5      6     18      6      4
  COL11A1 WILD-TYPE     79     79     67     63     43
D648V5, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1               5                79
  CLUS_2               6                79
  CLUS_3              18                67
  CLUS_4               6                63
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL11A1 MUTATED       13      6      6     14
  COL11A1 WILD-TYPE     82     68    115     66
D648V6, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1              13                82
  CLUS_2               6                68
  CLUS_3               6               115
  CLUS_4              14                66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COL11A1 MUTATED       11      6      9      6      6      3
  COL11A1 WILD-TYPE     41     58     63     98     34     56
D648V7, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1              11                41
  CLUS_2               6                58
  CLUS_3               9                63
  CLUS_4               6                98
  CLUS_5               6                34
  CLUS_6               3                56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL11A1 MUTATED       29      6      6
  COL11A1 WILD-TYPE    188     69     93
D648V8, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1              29               188
  CLUS_2               6                69
  CLUS_3               6                93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL11A1 MUTATED       17      9      6
  COL11A1 WILD-TYPE    104     99     66
D648V9, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1              17               104
  CLUS_2               9                99
  CLUS_3               6                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL11A1 MUTATED       11      3      3      4     11
  COL11A1 WILD-TYPE     77     63     42     51     36
D648V10, multiclass
        clus
vv       COL11A1 MUTATED COL11A1 WILD-TYPE
  CLUS_1              11                77
  CLUS_2               3                63
  CLUS_3               3                42
  CLUS_4               4                51
  CLUS_5              11                36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(649) Variable = BIN3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BIN3 MUTATED        0      4      0      0
  BIN3 WILD-TYPE    204    133     47      3
D649V1, multiclass
        clus
vv       BIN3 MUTATED BIN3 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            4            133
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BIN3 MUTATED        0      4      0      0      0
  BIN3 WILD-TYPE     39     92     44     88     80
D649V2, multiclass
        clus
vv       BIN3 MUTATED BIN3 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BIN3 MUTATED        0      1      1      0      0
  BIN3 WILD-TYPE     26     78     72     82     58
D649V3, multiclass
[1] "Remove cluster labels:" "BIN3 MUTATED"          
clus
  BIN3 MUTATED BIN3 WILD-TYPE 
             2            316 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-4183     TCGA-BR-4184 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-4187     TCGA-BR-4188     TCGA-BR-4191     TCGA-BR-4201 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-4253     TCGA-BR-4255     TCGA-BR-4256     TCGA-BR-4257 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280     TCGA-BR-4292 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-4294     TCGA-BR-4357     TCGA-BR-4361     TCGA-BR-4362 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-4363     TCGA-BR-4366     TCGA-BR-4368     TCGA-BR-4369 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-4370     TCGA-BR-4371     TCGA-BR-6452     TCGA-BR-6453 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6709 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-7704     TCGA-BR-7715     TCGA-BR-7716     TCGA-BR-7717 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-7722     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8060     TCGA-BR-8080     TCGA-BR-8081 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8284     TCGA-BR-8285     TCGA-BR-8286     TCGA-BR-8289 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8360 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368     TCGA-BR-8369 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8380 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8484     TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8589     TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8686 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A44U 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J2     TCGA-BR-A4J4 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-A4J5     TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-A4PD     TCGA-BR-A4PE     TCGA-BR-A4PF     TCGA-BR-A4QI 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8528     TCGA-CD-8529 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8533 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48A     TCGA-CD-A48C 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CD-A4MJ 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-4442     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4460     TCGA-CG-4465     TCGA-CG-4466 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-4469     TCGA-CG-4474     TCGA-CG-4475     TCGA-CG-4476 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5716     TCGA-CG-5717     TCGA-CG-5718 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5723 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5734 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6527     TCGA-D7-6528 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8573 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8578     TCGA-D7-A4YT 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-D7-A6EV     TCGA-D7-A6EX     TCGA-D7-A6EY 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-A6EZ     TCGA-D7-A6F0     TCGA-D7-A748     TCGA-EQ-8122 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-EQ-A4SO     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-F1-A448     TCGA-F1-A72C     TCGA-FP-7916     TCGA-FP-7998 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7133     TCGA-HF-7134 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-HF-7136     TCGA-HJ-7597     TCGA-HU-8602     TCGA-HU-8608 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-HU-8610     TCGA-HU-A4GF     TCGA-HU-A4GQ     TCGA-HU-A4GT 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-HU-A4GU     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4HD 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-IN-A6RI     TCGA-IN-A6RL     TCGA-IN-A6RN     TCGA-IN-A6RO 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-IN-A6RR     TCGA-IN-A6RS     TCGA-IN-A7NR     TCGA-IN-A7NT 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-IN-A7NU     TCGA-IN-AB1V     TCGA-IN-AB1X     TCGA-IP-7968 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-KB-A6F5     TCGA-KB-A93G     TCGA-MX-A5UG     TCGA-RD-A7BS 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-RD-A7BT     TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-SW-A7EA 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-SW-A7EB     TCGA-VQ-A8DL     TCGA-VQ-A8DT     TCGA-VQ-A8DU 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-VQ-A8E2     TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-VQ-A8PE     TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-AA64 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-VQ-AA69     TCGA-VQ-AA6A     TCGA-VQ-AA6B     TCGA-VQ-AA6F 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-VQ-AA6G     TCGA-VQ-AA6I     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BIN3 MUTATED        0      1      1      0
  BIN3 WILD-TYPE    127     50     70     69
D649V4, multiclass
[1] "Remove cluster labels:" "BIN3 MUTATED"          
clus
  BIN3 MUTATED BIN3 WILD-TYPE 
             2            316 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-4183     TCGA-BR-4184 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-4187     TCGA-BR-4188     TCGA-BR-4191     TCGA-BR-4201 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-4253     TCGA-BR-4255     TCGA-BR-4256     TCGA-BR-4257 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-4267     TCGA-BR-4279     TCGA-BR-4280     TCGA-BR-4292 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-4294     TCGA-BR-4357     TCGA-BR-4361     TCGA-BR-4362 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-4363     TCGA-BR-4366     TCGA-BR-4368     TCGA-BR-4369 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-4370     TCGA-BR-4371     TCGA-BR-6452     TCGA-BR-6453 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6566 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6709 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-7704     TCGA-BR-7715     TCGA-BR-7716     TCGA-BR-7717 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-7722     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8060     TCGA-BR-8080     TCGA-BR-8081 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8284     TCGA-BR-8285     TCGA-BR-8286     TCGA-BR-8289 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8360 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368     TCGA-BR-8369 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8380 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8484     TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8588 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8589     TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8686 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A44U 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J2     TCGA-BR-A4J4 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-A4J5     TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-A4PD     TCGA-BR-A4PE     TCGA-BR-A4PF     TCGA-BR-A4QI 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8528     TCGA-CD-8529 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8533 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48A     TCGA-CD-A48C 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CD-A4MJ 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-4300     TCGA-CG-4301     TCGA-CG-4304     TCGA-CG-4305 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-4306     TCGA-CG-4436     TCGA-CG-4437     TCGA-CG-4438 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-4442     TCGA-CG-4443     TCGA-CG-4444     TCGA-CG-4449 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-4455     TCGA-CG-4460     TCGA-CG-4465     TCGA-CG-4466 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-4469     TCGA-CG-4474     TCGA-CG-4475     TCGA-CG-4476 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-4477     TCGA-CG-5716     TCGA-CG-5717     TCGA-CG-5718 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5723 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5734 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6527     TCGA-D7-6528 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8573 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8578     TCGA-D7-A4YT 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-D7-A6EV     TCGA-D7-A6EX     TCGA-D7-A6EY 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-D7-A6EZ     TCGA-D7-A6F0     TCGA-D7-A748     TCGA-EQ-8122 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-EQ-A4SO     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-F1-A448     TCGA-F1-A72C     TCGA-FP-7916     TCGA-FP-7998 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7133     TCGA-HF-7134 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-HF-7136     TCGA-HJ-7597     TCGA-HU-8602     TCGA-HU-8608 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-HU-8610     TCGA-HU-A4GF     TCGA-HU-A4GQ     TCGA-HU-A4GT 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-HU-A4GU     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4HD 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-IN-A6RI     TCGA-IN-A6RL     TCGA-IN-A6RN     TCGA-IN-A6RO 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-IN-A6RR     TCGA-IN-A6RS     TCGA-IN-A7NR     TCGA-IN-A7NT 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-IN-A7NU     TCGA-IN-AB1V     TCGA-IN-AB1X     TCGA-IP-7968 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-KB-A6F5     TCGA-KB-A93G     TCGA-MX-A5UG     TCGA-RD-A7BS 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-RD-A7BT     TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-SW-A7EA 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-SW-A7EB     TCGA-VQ-A8DL     TCGA-VQ-A8DT     TCGA-VQ-A8DU 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-VQ-A8E2     TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-VQ-A8PE     TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-AA64 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-VQ-AA69     TCGA-VQ-AA6A     TCGA-VQ-AA6B     TCGA-VQ-AA6F 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
    TCGA-VQ-AA6G     TCGA-VQ-AA6I     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" "BIN3 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BIN3 MUTATED        0      1      2      0      0
  BIN3 WILD-TYPE     84     84     83     69     47
D649V5, multiclass
        clus
vv       BIN3 MUTATED BIN3 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            2             83
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BIN3 MUTATED        1      0      0      2
  BIN3 WILD-TYPE     94     74    121     78
D649V6, multiclass
        clus
vv       BIN3 MUTATED BIN3 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            0             74
  CLUS_3            0            121
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BIN3 MUTATED        2      1      0      0      1      0
  BIN3 WILD-TYPE     50     63     72    104     39     59
D649V7, multiclass
        clus
vv       BIN3 MUTATED BIN3 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            1             63
  CLUS_3            0             72
  CLUS_4            0            104
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BIN3 MUTATED        2      0      2
  BIN3 WILD-TYPE    215     75     97
D649V8, multiclass
        clus
vv       BIN3 MUTATED BIN3 WILD-TYPE
  CLUS_1            2            215
  CLUS_2            0             75
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BIN3 MUTATED        1      1      1
  BIN3 WILD-TYPE    120    107     71
D649V9, multiclass
        clus
vv       BIN3 MUTATED BIN3 WILD-TYPE
  CLUS_1            1            120
  CLUS_2            1            107
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BIN3 MUTATED        1      0      1      0      1
  BIN3 WILD-TYPE     87     66     44     55     46
D649V10, multiclass
        clus
vv       BIN3 MUTATED BIN3 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(650) Variable = SLC25A17 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A17 MUTATED        1      2      1      0
  SLC25A17 WILD-TYPE    203    135     46      3
D650V1, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                2                135
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC25A17 MUTATED        0      1      1      0      0
  SLC25A17 WILD-TYPE     39     95     43     88     80
D650V2, multiclass
[1] "Remove cluster labels:" "SLC25A17 MUTATED"      
clus
  SLC25A17 MUTATED SLC25A17 WILD-TYPE 
                 2                345 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-B7-A5TI 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-B7-A5TJ         TCGA-B7-A5TK         TCGA-B7-A5TN 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6452         TCGA-BR-6453         TCGA-BR-6454 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6456         TCGA-BR-6457 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6458         TCGA-BR-6563         TCGA-BR-6564 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6565         TCGA-BR-6566         TCGA-BR-6705 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6706         TCGA-BR-6707         TCGA-BR-6709 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6710         TCGA-BR-6801         TCGA-BR-6802 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6803         TCGA-BR-6852         TCGA-BR-7196 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7197         TCGA-BR-7703         TCGA-BR-7704 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7707         TCGA-BR-7715         TCGA-BR-7716 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7717         TCGA-BR-7722         TCGA-BR-7723 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7901         TCGA-BR-7957         TCGA-BR-7958 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7959         TCGA-BR-8058         TCGA-BR-8059 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8060         TCGA-BR-8077         TCGA-BR-8078 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8080         TCGA-BR-8081         TCGA-BR-8284 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8285         TCGA-BR-8286         TCGA-BR-8289 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8291         TCGA-BR-8295         TCGA-BR-8297 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8360         TCGA-BR-8361         TCGA-BR-8363 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8364         TCGA-BR-8365         TCGA-BR-8366 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8367         TCGA-BR-8368         TCGA-BR-8369 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8373         TCGA-BR-8380         TCGA-BR-8381 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8382         TCGA-BR-8384         TCGA-BR-8483 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8484         TCGA-BR-8485         TCGA-BR-8486 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8487         TCGA-BR-8588         TCGA-BR-8589 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8590         TCGA-BR-8591         TCGA-BR-8592 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8676         TCGA-BR-8677         TCGA-BR-8678 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8679         TCGA-BR-8680         TCGA-BR-8682 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8683         TCGA-BR-8686         TCGA-BR-8687 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8690         TCGA-BR-A44T         TCGA-BR-A44U 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A452         TCGA-BR-A453         TCGA-BR-A4CQ 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4CR         TCGA-BR-A4CS         TCGA-BR-A4IU 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4IV         TCGA-BR-A4IY         TCGA-BR-A4IZ 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4J1         TCGA-BR-A4J2         TCGA-BR-A4J4 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4J5         TCGA-BR-A4J6         TCGA-BR-A4J7 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4J8         TCGA-BR-A4PD         TCGA-BR-A4PE 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4PF         TCGA-BR-A4QI         TCGA-BR-A4QL 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4QM         TCGA-CD-5798         TCGA-CD-5799 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-5800         TCGA-CD-5801         TCGA-CD-5802 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-5803         TCGA-CD-5804         TCGA-CD-5813 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8524         TCGA-CD-8525         TCGA-CD-8526 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8527         TCGA-CD-8528         TCGA-CD-8529 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8530         TCGA-CD-8531         TCGA-CD-8532 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8533         TCGA-CD-8534         TCGA-CD-8535 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8536         TCGA-CD-A486         TCGA-CD-A487 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-A489         TCGA-CD-A48A         TCGA-CD-A48C 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-A4MH         TCGA-CD-A4MI         TCGA-CD-A4MJ 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-4437         TCGA-CG-4441         TCGA-CG-5716 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6822         TCGA-D7-8570         TCGA-D7-8572 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-8573         TCGA-D7-8574         TCGA-D7-8575 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-8576         TCGA-D7-8578         TCGA-D7-8579 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A4YT         TCGA-D7-A4YU         TCGA-D7-A4YV 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A4YX         TCGA-D7-A4YY         TCGA-D7-A4Z0 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A6ET         TCGA-D7-A6EV         TCGA-D7-A6EX 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A6EY         TCGA-D7-A6EZ         TCGA-D7-A6F0 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A6F2         TCGA-D7-A747         TCGA-D7-A748 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A74A         TCGA-D7-A74B         TCGA-EQ-5647 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-EQ-8122         TCGA-EQ-A4SO         TCGA-F1-6177 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F1-6874         TCGA-F1-6875         TCGA-F1-A448 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F1-A72C         TCGA-FP-7735         TCGA-FP-7829 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-7916         TCGA-FP-7998         TCGA-FP-8099 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-8209         TCGA-FP-8210         TCGA-FP-8211 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-8631         TCGA-FP-A4BE         TCGA-FP-A4BF 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-A8CX         TCGA-FP-A9TM         TCGA-HF-7131 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HF-7132         TCGA-HF-7133         TCGA-HF-7134 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HF-7136         TCGA-HF-A5NB         TCGA-HJ-7597 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-8238         TCGA-HU-8243         TCGA-HU-8244 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-8249         TCGA-HU-8602         TCGA-HU-8604 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-8608         TCGA-HU-8610         TCGA-HU-A4G2 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4G3         TCGA-HU-A4G6         TCGA-HU-A4G8 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4G9         TCGA-HU-A4GC         TCGA-HU-A4GD 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GF         TCGA-HU-A4GH         TCGA-HU-A4GJ 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GN         TCGA-HU-A4GP         TCGA-HU-A4GQ 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GT         TCGA-HU-A4GU         TCGA-HU-A4GX 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GY         TCGA-HU-A4H0         TCGA-HU-A4H2 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4H3         TCGA-HU-A4H4         TCGA-HU-A4H5 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4H6         TCGA-HU-A4H8         TCGA-HU-A4HB 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4HD         TCGA-IN-7806         TCGA-IN-7808 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-8462         TCGA-IN-8663         TCGA-IN-A6RI 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-A6RJ         TCGA-IN-A6RL         TCGA-IN-A6RN 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-A6RO         TCGA-IN-A6RP         TCGA-IN-A6RR 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-A6RS         TCGA-IN-A7NR         TCGA-IN-A7NT 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-A7NU         TCGA-IN-AB1V         TCGA-IN-AB1X 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IP-7968         TCGA-KB-A6F5         TCGA-KB-A6F7 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-KB-A93G         TCGA-KB-A93J         TCGA-MX-A5UG 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-MX-A5UJ         TCGA-MX-A663         TCGA-MX-A666 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-R5-A7O7         TCGA-R5-A7ZE         TCGA-R5-A7ZF 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-R5-A7ZI         TCGA-R5-A7ZR         TCGA-R5-A804 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-R5-A805         TCGA-RD-A7BS         TCGA-RD-A7BT 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-RD-A7BW         TCGA-RD-A7C1         TCGA-RD-A8MV 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-RD-A8MW         TCGA-RD-A8N0         TCGA-RD-A8N1 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-RD-A8N2         TCGA-RD-A8N4         TCGA-RD-A8N5 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-RD-A8N6         TCGA-RD-A8N9         TCGA-SW-A7EA 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-SW-A7EB         TCGA-VQ-A8DL         TCGA-VQ-A8DT 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A8DU         TCGA-VQ-A8DV         TCGA-VQ-A8DZ 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A8E2         TCGA-VQ-A8E7         TCGA-VQ-A8P2 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A8P3         TCGA-VQ-A8PE         TCGA-VQ-A8PK 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A8PM         TCGA-VQ-A8PQ         TCGA-VQ-A91Q 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A91U         TCGA-VQ-A91V         TCGA-VQ-A92D 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A94T         TCGA-VQ-AA64         TCGA-VQ-AA68 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-AA69         TCGA-VQ-AA6A         TCGA-VQ-AA6B 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-AA6F         TCGA-VQ-AA6G         TCGA-VQ-AA6I 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-AA6J         TCGA-VQ-AA6K         TCGA-ZA-A8F6 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC25A17 MUTATED        0      2      0      0      2
  SLC25A17 WILD-TYPE     26     77     73     82     56
D650V3, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                2                 77
  CLUS_3                0                 73
  CLUS_4                0                 82
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A17 MUTATED        2      1      1      0
  SLC25A17 WILD-TYPE    125     50     70     69
D650V4, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                1                 50
  CLUS_3                1                 70
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC25A17 MUTATED        0      1      2      1      0
  SLC25A17 WILD-TYPE     84     84     83     68     47
D650V5, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                2                 83
  CLUS_4                1                 68
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A17 MUTATED        2      0      0      2
  SLC25A17 WILD-TYPE     93     74    121     78
D650V6, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                0                 74
  CLUS_3                0                121
  CLUS_4                2                 78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC25A17 MUTATED        0      2      1      1      0      0
  SLC25A17 WILD-TYPE     52     62     71    103     40     59
D650V7, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                0                 52
  CLUS_2                2                 62
  CLUS_3                1                 71
  CLUS_4                1                103
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A17 MUTATED        3      0      1
  SLC25A17 WILD-TYPE    214     75     98
D650V8, multiclass
        clus
vv       SLC25A17 MUTATED SLC25A17 WILD-TYPE
  CLUS_1                3                214
  CLUS_2                0                 75
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A17 MUTATED        0      1      1
  SLC25A17 WILD-TYPE    121    107     71
D650V9, multiclass
[1] "Remove cluster labels:" "SLC25A17 MUTATED"      
clus
  SLC25A17 MUTATED SLC25A17 WILD-TYPE 
                 2                299 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-B7-A5TI 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-B7-A5TJ         TCGA-B7-A5TK         TCGA-B7-A5TN 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6452         TCGA-BR-6453         TCGA-BR-6454 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6456         TCGA-BR-6457 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6458         TCGA-BR-6563         TCGA-BR-6564 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6565         TCGA-BR-6566         TCGA-BR-6705 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6706         TCGA-BR-6707         TCGA-BR-6709 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6710         TCGA-BR-6801         TCGA-BR-6802 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6803         TCGA-BR-6852         TCGA-BR-7196 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7197         TCGA-BR-7703         TCGA-BR-7704 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7707         TCGA-BR-7715         TCGA-BR-7717 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7723         TCGA-BR-7901         TCGA-BR-7957 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7958         TCGA-BR-7959         TCGA-BR-8058 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8059         TCGA-BR-8060         TCGA-BR-8077 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8078         TCGA-BR-8080         TCGA-BR-8284 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8286         TCGA-BR-8289         TCGA-BR-8291 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8295         TCGA-BR-8297         TCGA-BR-8360 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8361         TCGA-BR-8363         TCGA-BR-8364 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8365         TCGA-BR-8368         TCGA-BR-8369 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8373         TCGA-BR-8380         TCGA-BR-8381 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8382         TCGA-BR-8384         TCGA-BR-8483 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8485         TCGA-BR-8486         TCGA-BR-8487 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8588         TCGA-BR-8590         TCGA-BR-8591 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8592         TCGA-BR-8676         TCGA-BR-8677 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8678         TCGA-BR-8679         TCGA-BR-8680 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8682         TCGA-BR-8683         TCGA-BR-8687 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8690         TCGA-BR-A44T         TCGA-BR-A452 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A453         TCGA-BR-A4CQ         TCGA-BR-A4CR 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4CS         TCGA-BR-A4IU         TCGA-BR-A4IV 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4IY         TCGA-BR-A4IZ         TCGA-BR-A4J1 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4J5         TCGA-BR-A4J6         TCGA-BR-A4J7 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4J8         TCGA-BR-A4PD         TCGA-BR-A4QI 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4QL         TCGA-BR-A4QM         TCGA-CD-5798 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-5799         TCGA-CD-5800         TCGA-CD-5801 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-5802         TCGA-CD-5803         TCGA-CD-5804 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CD-8524         TCGA-CD-8525 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8526         TCGA-CD-8527         TCGA-CD-8529 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8530         TCGA-CD-8531         TCGA-CD-8532 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8533         TCGA-CD-8534         TCGA-CD-8535 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8536         TCGA-CD-A486         TCGA-CD-A487 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-A489         TCGA-CD-A48C         TCGA-CD-A4MH 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-A4MI         TCGA-CG-4437         TCGA-CG-4441 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-4449         TCGA-CG-5716         TCGA-CG-5717 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5718         TCGA-CG-5719         TCGA-CG-5720 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5721         TCGA-CG-5722         TCGA-CG-5723 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5724         TCGA-CG-5725         TCGA-CG-5726 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5727         TCGA-CG-5728         TCGA-CG-5730 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5732         TCGA-CG-5733         TCGA-CG-5734 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-5577         TCGA-D7-5578         TCGA-D7-5579 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6518         TCGA-D7-6519         TCGA-D7-6520 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6521         TCGA-D7-6522         TCGA-D7-6524 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6525         TCGA-D7-6526         TCGA-D7-6527 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6528         TCGA-D7-6815         TCGA-D7-6817 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6818         TCGA-D7-6820         TCGA-D7-6822 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-8570         TCGA-D7-8572         TCGA-D7-8574 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-8575         TCGA-D7-8576         TCGA-D7-8578 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-8579         TCGA-D7-A4YT         TCGA-D7-A4YU 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A4YV         TCGA-D7-A4YY         TCGA-D7-A4Z0 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A6ET         TCGA-D7-A6EV         TCGA-D7-A6EX 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A6EY         TCGA-D7-A6EZ         TCGA-D7-A6F0 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A6F2         TCGA-D7-A747         TCGA-D7-A748 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A74A         TCGA-D7-A74B         TCGA-EQ-5647 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-EQ-8122         TCGA-F1-6177         TCGA-F1-6874 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F1-6875         TCGA-F1-A448         TCGA-FP-7735 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-7829         TCGA-FP-7998         TCGA-FP-8099 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-8209         TCGA-FP-8210         TCGA-FP-8211 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-8631         TCGA-FP-A4BE         TCGA-FP-A9TM 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HF-7131         TCGA-HF-7132         TCGA-HF-7134 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HF-7136         TCGA-HU-8238         TCGA-HU-8243 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-8602         TCGA-HU-8604         TCGA-HU-8608 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4G3         TCGA-HU-A4G8         TCGA-HU-A4GC 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GD         TCGA-HU-A4GF         TCGA-HU-A4GH 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GJ         TCGA-HU-A4GN         TCGA-HU-A4GQ 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GT         TCGA-HU-A4GX         TCGA-HU-A4GY 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4H2         TCGA-HU-A4H4         TCGA-HU-A4H5 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4H6         TCGA-HU-A4H8         TCGA-HU-A4HB 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-7806         TCGA-IN-7808         TCGA-IN-8462 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-8663         TCGA-IN-A6RI         TCGA-IN-A6RJ 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-A6RL         TCGA-IN-A6RN         TCGA-IN-A6RP 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-A7NR         TCGA-IN-A7NT         TCGA-IN-A7NU 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-AB1V         TCGA-IN-AB1X         TCGA-IP-7968 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-KB-A6F5         TCGA-KB-A6F7         TCGA-KB-A93J 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-MX-A5UG         TCGA-MX-A5UJ         TCGA-MX-A663 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-MX-A666         TCGA-R5-A7O7         TCGA-R5-A7ZE 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-R5-A7ZF         TCGA-R5-A7ZI         TCGA-R5-A7ZR 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-R5-A804         TCGA-R5-A805         TCGA-RD-A7BS 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-RD-A7BW         TCGA-RD-A7C1         TCGA-RD-A8MV 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-RD-A8MW         TCGA-RD-A8N0         TCGA-RD-A8N1 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-RD-A8N5         TCGA-RD-A8N6         TCGA-RD-A8N9 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-SW-A7EA         TCGA-SW-A7EB         TCGA-VQ-A8DL 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A8DU         TCGA-VQ-A8DV         TCGA-VQ-A8E2 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A8E7         TCGA-VQ-A8P2         TCGA-VQ-A8P3 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A8PE         TCGA-VQ-A8PK         TCGA-VQ-A8PM 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A8PQ         TCGA-VQ-A91Q         TCGA-VQ-A91U 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A91V         TCGA-VQ-A92D         TCGA-VQ-A94T 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-AA64         TCGA-VQ-AA68         TCGA-VQ-AA69 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-AA6A         TCGA-VQ-AA6B         TCGA-VQ-AA6F 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-AA6G         TCGA-VQ-AA6I         TCGA-VQ-AA6J 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-AA6K         TCGA-ZA-A8F6 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC25A17 MUTATED        1      0      0      0      1
  SLC25A17 WILD-TYPE     87     66     45     55     46
D650V10, multiclass
[1] "Remove cluster labels:" "SLC25A17 MUTATED"      
clus
  SLC25A17 MUTATED SLC25A17 WILD-TYPE 
                 2                299 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-B7-A5TI 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-B7-A5TJ         TCGA-B7-A5TK         TCGA-B7-A5TN 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6452         TCGA-BR-6453         TCGA-BR-6454 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6456         TCGA-BR-6457 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6458         TCGA-BR-6563         TCGA-BR-6564 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6565         TCGA-BR-6566         TCGA-BR-6705 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6706         TCGA-BR-6707         TCGA-BR-6709 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6710         TCGA-BR-6801         TCGA-BR-6802 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-6803         TCGA-BR-6852         TCGA-BR-7196 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7197         TCGA-BR-7703         TCGA-BR-7704 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7707         TCGA-BR-7715         TCGA-BR-7717 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7723         TCGA-BR-7901         TCGA-BR-7957 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-7958         TCGA-BR-7959         TCGA-BR-8058 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8059         TCGA-BR-8060         TCGA-BR-8077 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8078         TCGA-BR-8080         TCGA-BR-8284 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8286         TCGA-BR-8289         TCGA-BR-8291 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8295         TCGA-BR-8297         TCGA-BR-8360 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8361         TCGA-BR-8363         TCGA-BR-8364 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8365         TCGA-BR-8368         TCGA-BR-8369 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8373         TCGA-BR-8380         TCGA-BR-8381 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8382         TCGA-BR-8384         TCGA-BR-8483 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8485         TCGA-BR-8486         TCGA-BR-8487 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8588         TCGA-BR-8590         TCGA-BR-8591 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8592         TCGA-BR-8676         TCGA-BR-8677 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8678         TCGA-BR-8679         TCGA-BR-8680 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8682         TCGA-BR-8683         TCGA-BR-8687 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-8690         TCGA-BR-A44T         TCGA-BR-A452 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A453         TCGA-BR-A4CQ         TCGA-BR-A4CR 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4CS         TCGA-BR-A4IU         TCGA-BR-A4IV 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4IY         TCGA-BR-A4IZ         TCGA-BR-A4J1 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4J5         TCGA-BR-A4J6         TCGA-BR-A4J7 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4J8         TCGA-BR-A4PD         TCGA-BR-A4QI 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-BR-A4QL         TCGA-BR-A4QM         TCGA-CD-5798 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-5799         TCGA-CD-5800         TCGA-CD-5801 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-5802         TCGA-CD-5803         TCGA-CD-5804 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CD-8524         TCGA-CD-8525 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8526         TCGA-CD-8527         TCGA-CD-8529 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8530         TCGA-CD-8531         TCGA-CD-8532 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8533         TCGA-CD-8534         TCGA-CD-8535 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-8536         TCGA-CD-A486         TCGA-CD-A487 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-A489         TCGA-CD-A48C         TCGA-CD-A4MH 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CD-A4MI         TCGA-CG-4437         TCGA-CG-4441 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-4449         TCGA-CG-5716         TCGA-CG-5717 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5718         TCGA-CG-5719         TCGA-CG-5720 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5721         TCGA-CG-5722         TCGA-CG-5723 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5724         TCGA-CG-5725         TCGA-CG-5726 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5727         TCGA-CG-5728         TCGA-CG-5730 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-CG-5732         TCGA-CG-5733         TCGA-CG-5734 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-5577         TCGA-D7-5578         TCGA-D7-5579 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6518         TCGA-D7-6519         TCGA-D7-6520 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6521         TCGA-D7-6522         TCGA-D7-6524 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6525         TCGA-D7-6526         TCGA-D7-6527 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6528         TCGA-D7-6815         TCGA-D7-6817 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-6818         TCGA-D7-6820         TCGA-D7-6822 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-8570         TCGA-D7-8572         TCGA-D7-8574 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-8575         TCGA-D7-8576         TCGA-D7-8578 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-8579         TCGA-D7-A4YT         TCGA-D7-A4YU 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A4YV         TCGA-D7-A4YY         TCGA-D7-A4Z0 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A6ET         TCGA-D7-A6EV         TCGA-D7-A6EX 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A6EY         TCGA-D7-A6EZ         TCGA-D7-A6F0 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A6F2         TCGA-D7-A747         TCGA-D7-A748 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-D7-A74A         TCGA-D7-A74B         TCGA-EQ-5647 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-EQ-8122         TCGA-F1-6177         TCGA-F1-6874 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-F1-6875         TCGA-F1-A448         TCGA-FP-7735 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-7829         TCGA-FP-7998         TCGA-FP-8099 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-8209         TCGA-FP-8210         TCGA-FP-8211 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-FP-8631         TCGA-FP-A4BE         TCGA-FP-A9TM 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HF-7131         TCGA-HF-7132         TCGA-HF-7134 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HF-7136         TCGA-HU-8238         TCGA-HU-8243 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-8602         TCGA-HU-8604         TCGA-HU-8608 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4G3         TCGA-HU-A4G8         TCGA-HU-A4GC 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GD         TCGA-HU-A4GF         TCGA-HU-A4GH 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GJ         TCGA-HU-A4GN         TCGA-HU-A4GQ 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4GT         TCGA-HU-A4GX         TCGA-HU-A4GY 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4H2         TCGA-HU-A4H4         TCGA-HU-A4H5 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-HU-A4H6         TCGA-HU-A4H8         TCGA-HU-A4HB 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-7806         TCGA-IN-7808         TCGA-IN-8462 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-8663         TCGA-IN-A6RI         TCGA-IN-A6RJ 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-A6RL         TCGA-IN-A6RN         TCGA-IN-A6RP 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-A7NR         TCGA-IN-A7NT         TCGA-IN-A7NU 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-IN-AB1V         TCGA-IN-AB1X         TCGA-IP-7968 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-KB-A6F5         TCGA-KB-A6F7         TCGA-KB-A93J 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-MX-A5UG         TCGA-MX-A5UJ         TCGA-MX-A663 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-MX-A666         TCGA-R5-A7O7         TCGA-R5-A7ZE 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-R5-A7ZF         TCGA-R5-A7ZI         TCGA-R5-A7ZR 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-R5-A804         TCGA-R5-A805         TCGA-RD-A7BS 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-RD-A7BW         TCGA-RD-A7C1         TCGA-RD-A8MV 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-RD-A8MW         TCGA-RD-A8N0         TCGA-RD-A8N1 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-RD-A8N5         TCGA-RD-A8N6         TCGA-RD-A8N9 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-SW-A7EA         TCGA-SW-A7EB         TCGA-VQ-A8DL 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A8DU         TCGA-VQ-A8DV         TCGA-VQ-A8E2 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A8E7         TCGA-VQ-A8P2         TCGA-VQ-A8P3 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A8PE         TCGA-VQ-A8PK         TCGA-VQ-A8PM 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A8PQ         TCGA-VQ-A91Q         TCGA-VQ-A91U 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-A91V         TCGA-VQ-A92D         TCGA-VQ-A94T 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-AA64         TCGA-VQ-AA68         TCGA-VQ-AA69 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-AA6A         TCGA-VQ-AA6B         TCGA-VQ-AA6F 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-AA6G         TCGA-VQ-AA6I         TCGA-VQ-AA6J 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 
        TCGA-VQ-AA6K         TCGA-ZA-A8F6 
"SLC25A17 WILD-TYPE" "SLC25A17 WILD-TYPE" 

Clustering(651) Variable = CTSO MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSO MUTATED        2      4      0      0
  CTSO WILD-TYPE    202    133     47      3
D651V1, multiclass
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  CLUS_1            2            202
  CLUS_2            4            133
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSO MUTATED        1      3      0      1      0
  CTSO WILD-TYPE     38     93     44     87     80
D651V2, multiclass
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  CLUS_1            1             38
  CLUS_2            3             93
  CLUS_3            0             44
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSO MUTATED        0      1      2      1      2
  CTSO WILD-TYPE     26     78     71     81     56
D651V3, multiclass
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSO MUTATED        2      4      0      0
  CTSO WILD-TYPE    125     47     71     69
D651V4, multiclass
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  CLUS_1            2            125
  CLUS_2            4             47
  CLUS_3            0             71
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSO MUTATED        1      0      3      1      1
  CTSO WILD-TYPE     83     85     82     68     46
D651V5, multiclass
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  CLUS_1            1             83
  CLUS_2            0             85
  CLUS_3            3             82
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTSO MUTATED        2      0      1      3
  CTSO WILD-TYPE     93     74    120     77
D651V6, multiclass
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  CLUS_1            2             93
  CLUS_2            0             74
  CLUS_3            1            120
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTSO MUTATED        2      1      1      1      0      1
  CTSO WILD-TYPE     50     63     71    103     40     58
D651V7, multiclass
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  CLUS_1            2             50
  CLUS_2            1             63
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSO MUTATED        4      0      2
  CTSO WILD-TYPE    213     75     97
D651V8, multiclass
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  CLUS_1            4            213
  CLUS_2            0             75
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CTSO MUTATED        3      1      1
  CTSO WILD-TYPE    118    107     71
D651V9, multiclass
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  CLUS_1            3            118
  CLUS_2            1            107
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTSO MUTATED        1      0      1      1      2
  CTSO WILD-TYPE     87     66     44     54     45
D651V10, multiclass
        clus
vv       CTSO MUTATED CTSO WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(652) Variable = PAM MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAM MUTATED        0      8      1      0
  PAM WILD-TYPE    204    129     46      3
D652V1, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           0           204
  CLUS_2           8           129
  CLUS_3           1            46
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAM MUTATED        1      2      3      0      0
  PAM WILD-TYPE     38     94     41     88     80
D652V2, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           1            38
  CLUS_2           2            94
  CLUS_3           3            41
  CLUS_4           0            88
  CLUS_5           0            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAM MUTATED        0      3      1      0      1
  PAM WILD-TYPE     26     76     72     82     57
D652V3, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           0            26
  CLUS_2           3            76
  CLUS_3           1            72
  CLUS_4           0            82
  CLUS_5           1            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAM MUTATED        2      2      1      0
  PAM WILD-TYPE    125     49     70     69
D652V4, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           2           125
  CLUS_2           2            49
  CLUS_3           1            70
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAM MUTATED        0      2      4      1      1
  PAM WILD-TYPE     84     83     81     68     46
D652V5, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           0            84
  CLUS_2           2            83
  CLUS_3           4            81
  CLUS_4           1            68
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAM MUTATED        1      2      2      3
  PAM WILD-TYPE     94     72    119     77
D652V6, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           1            94
  CLUS_2           2            72
  CLUS_3           2           119
  CLUS_4           3            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAM MUTATED        1      5      2      1      0      0
  PAM WILD-TYPE     51     59     70    103     40     59
D652V7, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           1            51
  CLUS_2           5            59
  CLUS_3           2            70
  CLUS_4           1           103
  CLUS_5           0            40
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PAM MUTATED        8      1      0
  PAM WILD-TYPE    209     74     99
D652V8, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           8           209
  CLUS_2           1            74
  CLUS_3           0            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PAM MUTATED        3      0      3
  PAM WILD-TYPE    118    108     69
D652V9, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           3           118
  CLUS_2           0           108
  CLUS_3           3            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAM MUTATED        2      1      1      0      2
  PAM WILD-TYPE     86     65     44     55     45
D652V10, multiclass
        clus
vv       PAM MUTATED PAM WILD-TYPE
  CLUS_1           2            86
  CLUS_2           1            65
  CLUS_3           1            44
  CLUS_4           0            55
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(653) Variable = TLE1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLE1 MUTATED        1     11      0      0
  TLE1 WILD-TYPE    203    126     47      3
D653V1, multiclass
        clus
vv       TLE1 MUTATED TLE1 WILD-TYPE
  CLUS_1            1            203
  CLUS_2           11            126
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TLE1 MUTATED        0      7      1      1      0
  TLE1 WILD-TYPE     39     89     43     87     80
D653V2, multiclass
        clus
vv       TLE1 MUTATED TLE1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            7             89
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TLE1 MUTATED        1      3      3      2      1
  TLE1 WILD-TYPE     25     76     70     80     57
D653V3, multiclass
        clus
vv       TLE1 MUTATED TLE1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            3             70
  CLUS_4            2             80
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLE1 MUTATED        1      7      1      1
  TLE1 WILD-TYPE    126     44     70     68
D653V4, multiclass
        clus
vv       TLE1 MUTATED TLE1 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            7             44
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TLE1 MUTATED        2      1      7      0      1
  TLE1 WILD-TYPE     82     84     78     69     46
D653V5, multiclass
        clus
vv       TLE1 MUTATED TLE1 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            1             84
  CLUS_3            7             78
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLE1 MUTATED        2      1      2      6
  TLE1 WILD-TYPE     93     73    119     74
D653V6, multiclass
        clus
vv       TLE1 MUTATED TLE1 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TLE1 MUTATED        3      2      4      1      0      2
  TLE1 WILD-TYPE     49     62     68    103     40     57
D653V7, multiclass
        clus
vv       TLE1 MUTATED TLE1 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            2             62
  CLUS_3            4             68
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TLE1 MUTATED        9      0      3
  TLE1 WILD-TYPE    208     75     96
D653V8, multiclass
        clus
vv       TLE1 MUTATED TLE1 WILD-TYPE
  CLUS_1            9            208
  CLUS_2            0             75
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TLE1 MUTATED        5      0      2
  TLE1 WILD-TYPE    116    108     70
D653V9, multiclass
        clus
vv       TLE1 MUTATED TLE1 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TLE1 MUTATED        2      0      1      1      3
  TLE1 WILD-TYPE     86     66     44     54     44
D653V10, multiclass
        clus
vv       TLE1 MUTATED TLE1 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(654) Variable = ZNF285 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF285 MUTATED        4      5      0      0
  ZNF285 WILD-TYPE    200    132     47      3
D654V1, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              4              200
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF285 MUTATED        0      5      0      2      0
  ZNF285 WILD-TYPE     39     91     44     86     80
D654V2, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              0               44
  CLUS_4              2               86
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF285 MUTATED        0      3      1      2      3
  ZNF285 WILD-TYPE     26     76     72     80     55
D654V3, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              1               72
  CLUS_4              2               80
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF285 MUTATED        3      4      1      1
  ZNF285 WILD-TYPE    124     47     70     68
D654V4, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              4               47
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF285 MUTATED        2      2      4      1      0
  ZNF285 WILD-TYPE     82     83     81     68     47
D654V5, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              2               83
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF285 MUTATED        2      1      4      2
  ZNF285 WILD-TYPE     93     73    117     78
D654V6, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              4              117
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF285 MUTATED        2      4      1      2      0      0
  ZNF285 WILD-TYPE     50     60     71    102     40     59
D654V7, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF285 MUTATED        7      1      1
  ZNF285 WILD-TYPE    210     74     98
D654V8, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              7              210
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF285 MUTATED        1      4      2
  ZNF285 WILD-TYPE    120    104     70
D654V9, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              1              120
  CLUS_2              4              104
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF285 MUTATED        2      2      2      1      0
  ZNF285 WILD-TYPE     86     64     43     54     47
D654V10, multiclass
        clus
vv       ZNF285 MUTATED ZNF285 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              2               64
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(655) Variable = PTOV1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTOV1 MUTATED        1      7      3      0
  PTOV1 WILD-TYPE    203    130     44      3
D655V1, multiclass
        clus
vv       PTOV1 MUTATED PTOV1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             7             130
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTOV1 MUTATED        0      7      2      0      1
  PTOV1 WILD-TYPE     39     89     42     88     79
D655V2, multiclass
        clus
vv       PTOV1 MUTATED PTOV1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              89
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTOV1 MUTATED        0      4      4      1      2
  PTOV1 WILD-TYPE     26     75     69     81     56
D655V3, multiclass
        clus
vv       PTOV1 MUTATED PTOV1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTOV1 MUTATED        2      6      2      1
  PTOV1 WILD-TYPE    125     45     69     68
D655V4, multiclass
        clus
vv       PTOV1 MUTATED PTOV1 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             6              45
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTOV1 MUTATED        0      2      5      0      4
  PTOV1 WILD-TYPE     84     83     80     69     43
D655V5, multiclass
        clus
vv       PTOV1 MUTATED PTOV1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTOV1 MUTATED        1      1      1      8
  PTOV1 WILD-TYPE     94     73    120     72
D655V6, multiclass
        clus
vv       PTOV1 MUTATED PTOV1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTOV1 MUTATED        3      2      3      3      0      0
  PTOV1 WILD-TYPE     49     62     69    101     40     59
D655V7, multiclass
        clus
vv       PTOV1 MUTATED PTOV1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             2              62
  CLUS_3             3              69
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTOV1 MUTATED        9      2      0
  PTOV1 WILD-TYPE    208     73     99
D655V8, multiclass
        clus
vv       PTOV1 MUTATED PTOV1 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             2              73
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTOV1 MUTATED        3      1      3
  PTOV1 WILD-TYPE    118    107     69
D655V9, multiclass
        clus
vv       PTOV1 MUTATED PTOV1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTOV1 MUTATED        1      1      2      0      3
  PTOV1 WILD-TYPE     87     65     43     55     44
D655V10, multiclass
        clus
vv       PTOV1 MUTATED PTOV1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(656) Variable = SLC6A11 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A11 MUTATED        1      7      2      0
  SLC6A11 WILD-TYPE    203    130     45      3
D656V1, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               7               130
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A11 MUTATED        0      3      2      0      2
  SLC6A11 WILD-TYPE     39     93     42     88     78
D656V2, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               2                42
  CLUS_4               0                88
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A11 MUTATED        2      1      3      0      2
  SLC6A11 WILD-TYPE     24     78     70     82     56
D656V3, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               1                78
  CLUS_3               3                70
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A11 MUTATED        4      3      1      0
  SLC6A11 WILD-TYPE    123     48     70     69
D656V4, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               4               123
  CLUS_2               3                48
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A11 MUTATED        2      2      4      0      1
  SLC6A11 WILD-TYPE     82     83     81     69     46
D656V5, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               2                82
  CLUS_2               2                83
  CLUS_3               4                81
  CLUS_4               0                69
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC6A11 MUTATED        3      1      3      2
  SLC6A11 WILD-TYPE     92     73    118     78
D656V6, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               1                73
  CLUS_3               3               118
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC6A11 MUTATED        1      5      1      1      1      1
  SLC6A11 WILD-TYPE     51     59     71    103     39     58
D656V7, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               5                59
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC6A11 MUTATED        8      0      2
  SLC6A11 WILD-TYPE    209     75     97
D656V8, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               8               209
  CLUS_2               0                75
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC6A11 MUTATED        0      2      4
  SLC6A11 WILD-TYPE    121    106     68
D656V9, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               0               121
  CLUS_2               2               106
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC6A11 MUTATED        2      0      3      0      1
  SLC6A11 WILD-TYPE     86     66     42     55     46
D656V10, multiclass
        clus
vv       SLC6A11 MUTATED SLC6A11 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               3                42
  CLUS_4               0                55
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(657) Variable = BRCA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA1 MUTATED        3     10      2      0
  BRCA1 WILD-TYPE    201    127     45      3
D657V1, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            10             127
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRCA1 MUTATED        1      5      3      1      0
  BRCA1 WILD-TYPE     38     91     41     87     80
D657V2, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             3              41
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRCA1 MUTATED        0      7      2      0      4
  BRCA1 WILD-TYPE     26     72     71     82     54
D657V3, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             7              72
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA1 MUTATED        3      6      4      0
  BRCA1 WILD-TYPE    124     45     67     69
D657V4, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             6              45
  CLUS_3             4              67
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRCA1 MUTATED        2      1      9      1      0
  BRCA1 WILD-TYPE     82     84     76     68     47
D657V5, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             1              84
  CLUS_3             9              76
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRCA1 MUTATED        1      0      4      8
  BRCA1 WILD-TYPE     94     74    117     72
D657V6, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             4             117
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRCA1 MUTATED        1      4      6      3      0      1
  BRCA1 WILD-TYPE     51     60     66    101     40     58
D657V7, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             4              60
  CLUS_3             6              66
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA1 MUTATED       11      1      3
  BRCA1 WILD-TYPE    206     74     96
D657V8, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             1              74
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRCA1 MUTATED        2      2      5
  BRCA1 WILD-TYPE    119    106     67
D657V9, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             2             106
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRCA1 MUTATED        3      1      0      1      4
  BRCA1 WILD-TYPE     85     65     45     54     43
D657V10, multiclass
        clus
vv       BRCA1 MUTATED BRCA1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             1              54
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(658) Variable = HAUS6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS6 MUTATED        1     11      1      0
  HAUS6 WILD-TYPE    203    126     46      3
D658V1, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAUS6 MUTATED        1      8      0      1      2
  HAUS6 WILD-TYPE     38     88     44     87     78
D658V2, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             8              88
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAUS6 MUTATED        2      3      3      1      4
  HAUS6 WILD-TYPE     24     76     70     81     54
D658V3, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             3              76
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS6 MUTATED        4      7      1      1
  HAUS6 WILD-TYPE    123     44     70     68
D658V4, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             7              44
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAUS6 MUTATED        1      0      7      2      2
  HAUS6 WILD-TYPE     83     85     78     67     45
D658V5, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             7              78
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAUS6 MUTATED        4      1      3      4
  HAUS6 WILD-TYPE     91     73    118     76
D658V6, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             3             118
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HAUS6 MUTATED        5      6      0      0      1      1
  HAUS6 WILD-TYPE     47     58     72    104     39     58
D658V7, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             6              58
  CLUS_3             0              72
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS6 MUTATED       10      2      1
  HAUS6 WILD-TYPE    207     73     98
D658V8, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HAUS6 MUTATED        6      0      6
  HAUS6 WILD-TYPE    115    108     66
D658V9, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             0             108
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAUS6 MUTATED        3      0      5      1      3
  HAUS6 WILD-TYPE     85     66     40     54     44
D658V10, multiclass
        clus
vv       HAUS6 MUTATED HAUS6 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             5              40
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(659) Variable = ARHGEF11 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF11 MUTATED        6     15      0      0
  ARHGEF11 WILD-TYPE    198    122     47      3
D659V1, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                6                198
  CLUS_2               15                122
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF11 MUTATED        1     13      0      1      2
  ARHGEF11 WILD-TYPE     38     83     44     87     78
D659V2, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2               13                 83
  CLUS_3                0                 44
  CLUS_4                1                 87
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF11 MUTATED        1      2      6      1      5
  ARHGEF11 WILD-TYPE     25     77     67     81     53
D659V3, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                2                 77
  CLUS_3                6                 67
  CLUS_4                1                 81
  CLUS_5                5                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF11 MUTATED        8      6      1      0
  ARHGEF11 WILD-TYPE    119     45     70     69
D659V4, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                8                119
  CLUS_2                6                 45
  CLUS_3                1                 70
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF11 MUTATED        0      3     10      7      1
  ARHGEF11 WILD-TYPE     84     82     75     62     46
D659V5, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                3                 82
  CLUS_3               10                 75
  CLUS_4                7                 62
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF11 MUTATED       10      2      2      7
  ARHGEF11 WILD-TYPE     85     72    119     73
D659V6, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1               10                 85
  CLUS_2                2                 72
  CLUS_3                2                119
  CLUS_4                7                 73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARHGEF11 MUTATED        5      6      2      2      5      1
  ARHGEF11 WILD-TYPE     47     58     70    102     35     58
D659V7, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                5                 47
  CLUS_2                6                 58
  CLUS_3                2                 70
  CLUS_4                2                102
  CLUS_5                5                 35
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGEF11 MUTATED       18      1      2
  ARHGEF11 WILD-TYPE    199     74     97
D659V8, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1               18                199
  CLUS_2                1                 74
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGEF11 MUTATED       10      2      4
  ARHGEF11 WILD-TYPE    111    106     68
D659V9, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1               10                111
  CLUS_2                2                106
  CLUS_3                4                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF11 MUTATED        6      1      3      0      6
  ARHGEF11 WILD-TYPE     82     65     42     55     41
D659V10, multiclass
        clus
vv       ARHGEF11 MUTATED ARHGEF11 WILD-TYPE
  CLUS_1                6                 82
  CLUS_2                1                 65
  CLUS_3                3                 42
  CLUS_4                0                 55
  CLUS_5                6                 41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(660) Variable = MGST2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGST2 MUTATED        0      3      0      0
  MGST2 WILD-TYPE    204    134     47      3
D660V1, multiclass
        clus
vv       MGST2 MUTATED MGST2 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             3             134
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGST2 MUTATED        0      1      2      0      0
  MGST2 WILD-TYPE     39     95     42     88     80
D660V2, multiclass
        clus
vv       MGST2 MUTATED MGST2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             1              95
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGST2 MUTATED        0      1      1      0      0
  MGST2 WILD-TYPE     26     78     72     82     58
D660V3, multiclass
[1] "Remove cluster labels:" "MGST2 MUTATED"         
clus
  MGST2 MUTATED MGST2 WILD-TYPE 
              2             316 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-4183      TCGA-BR-4184 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7704 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8060      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380      TCGA-BR-8381 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J5 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CG-4300      TCGA-CG-4301 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442      TCGA-CG-4443 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT      TCGA-D7-A4YU 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A6F0      TCGA-D7-A748      TCGA-EQ-8122      TCGA-EQ-A4SO 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-F1-A72C      TCGA-FP-7916      TCGA-FP-7998      TCGA-HF-7131 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134      TCGA-HF-7136 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8602      TCGA-HU-8608 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4GF      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4HD 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RO 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-A6RR      TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-A7NU      TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-KB-A6F5      TCGA-KB-A93G      TCGA-MX-A5UG      TCGA-RD-A7BS 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-RD-A7BT      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-SW-A7EA 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-AA64 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGST2 MUTATED        0      1      1      0
  MGST2 WILD-TYPE    127     50     70     69
D660V4, multiclass
[1] "Remove cluster labels:" "MGST2 MUTATED"         
clus
  MGST2 MUTATED MGST2 WILD-TYPE 
              2             316 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-4183      TCGA-BR-4184 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7704 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8060      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380      TCGA-BR-8381 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J5 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CG-4300      TCGA-CG-4301 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442      TCGA-CG-4443 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT      TCGA-D7-A4YU 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A6F0      TCGA-D7-A748      TCGA-EQ-8122      TCGA-EQ-A4SO 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-F1-A72C      TCGA-FP-7916      TCGA-FP-7998      TCGA-HF-7131 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134      TCGA-HF-7136 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8602      TCGA-HU-8608 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4GF      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4HD 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RO 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-A6RR      TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-A7NU      TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-KB-A6F5      TCGA-KB-A93G      TCGA-MX-A5UG      TCGA-RD-A7BS 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-RD-A7BT      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-SW-A7EA 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-AA64 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGST2 MUTATED        0      0      3      0      0
  MGST2 WILD-TYPE     84     85     82     69     47
D660V5, multiclass
        clus
vv       MGST2 MUTATED MGST2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MGST2 MUTATED        0      0      0      3
  MGST2 WILD-TYPE     95     74    121     77
D660V6, multiclass
        clus
vv       MGST2 MUTATED MGST2 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MGST2 MUTATED        0      2      1      0      0      0
  MGST2 WILD-TYPE     52     62     71    104     40     59
D660V7, multiclass
        clus
vv       MGST2 MUTATED MGST2 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MGST2 MUTATED        3      0      0
  MGST2 WILD-TYPE    214     75     99
D660V8, multiclass
        clus
vv       MGST2 MUTATED MGST2 WILD-TYPE
  CLUS_1             3             214
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MGST2 MUTATED        1      0      1
  MGST2 WILD-TYPE    120    108     71
D660V9, multiclass
[1] "Remove cluster labels:" "MGST2 MUTATED"         
clus
  MGST2 MUTATED MGST2 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8284 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CG-4437 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716      TCGA-CG-5717 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-FP-A9TM 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134      TCGA-HF-7136 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-IN-7806 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MGST2 MUTATED        1      0      1      0      0
  MGST2 WILD-TYPE     87     66     44     55     47
D660V10, multiclass
[1] "Remove cluster labels:" "MGST2 MUTATED"         
clus
  MGST2 MUTATED MGST2 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8284 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CG-4437 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716      TCGA-CG-5717 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-FP-A9TM 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134      TCGA-HF-7136 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-IN-7806 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"MGST2 WILD-TYPE" "MGST2 WILD-TYPE" "MGST2 WILD-TYPE" 

Clustering(661) Variable = CD4 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD4 MUTATED        1      9      1      0
  CD4 WILD-TYPE    203    128     46      3
D661V1, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           1           203
  CLUS_2           9           128
  CLUS_3           1            46
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD4 MUTATED        1      8      1      0      0
  CD4 WILD-TYPE     38     88     43     88     80
D661V2, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           1            38
  CLUS_2           8            88
  CLUS_3           1            43
  CLUS_4           0            88
  CLUS_5           0            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD4 MUTATED        0      4      5      0      1
  CD4 WILD-TYPE     26     75     68     82     57
D661V3, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           0            26
  CLUS_2           4            75
  CLUS_3           5            68
  CLUS_4           0            82
  CLUS_5           1            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD4 MUTATED        3      3      3      1
  CD4 WILD-TYPE    124     48     68     68
D661V4, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           3           124
  CLUS_2           3            48
  CLUS_3           3            68
  CLUS_4           1            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD4 MUTATED        0      2      5      1      3
  CD4 WILD-TYPE     84     83     80     68     44
D661V5, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           0            84
  CLUS_2           2            83
  CLUS_3           5            80
  CLUS_4           1            68
  CLUS_5           3            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD4 MUTATED        3      2      1      5
  CD4 WILD-TYPE     92     72    120     75
D661V6, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           3            92
  CLUS_2           2            72
  CLUS_3           1           120
  CLUS_4           5            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD4 MUTATED        4      1      2      2      1      1
  CD4 WILD-TYPE     48     63     70    102     39     58
D661V7, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           4            48
  CLUS_2           1            63
  CLUS_3           2            70
  CLUS_4           2           102
  CLUS_5           1            39
  CLUS_6           1            58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CD4 MUTATED        8      1      2
  CD4 WILD-TYPE    209     74     97
D661V8, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           8           209
  CLUS_2           1            74
  CLUS_3           2            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CD4 MUTATED        6      1      3
  CD4 WILD-TYPE    115    107     69
D661V9, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           6           115
  CLUS_2           1           107
  CLUS_3           3            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD4 MUTATED        4      1      1      1      3
  CD4 WILD-TYPE     84     65     44     54     44
D661V10, multiclass
        clus
vv       CD4 MUTATED CD4 WILD-TYPE
  CLUS_1           4            84
  CLUS_2           1            65
  CLUS_3           1            44
  CLUS_4           1            54
  CLUS_5           3            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(662) Variable = RP1L1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RP1L1 MUTATED       10     17      4      0
  RP1L1 WILD-TYPE    194    120     43      3
D662V1, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1            10             194
  CLUS_2            17             120
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RP1L1 MUTATED        3     15      4      2      3
  RP1L1 WILD-TYPE     36     81     40     86     77
D662V2, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             3              36
  CLUS_2            15              81
  CLUS_3             4              40
  CLUS_4             2              86
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RP1L1 MUTATED        2     12      7      2      4
  RP1L1 WILD-TYPE     24     67     66     80     54
D662V3, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2            12              67
  CLUS_3             7              66
  CLUS_4             2              80
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RP1L1 MUTATED       10     10      5      2
  RP1L1 WILD-TYPE    117     41     66     67
D662V4, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1            10             117
  CLUS_2            10              41
  CLUS_3             5              66
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RP1L1 MUTATED        3      4     13      7      2
  RP1L1 WILD-TYPE     81     81     72     62     45
D662V5, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             4              81
  CLUS_3            13              72
  CLUS_4             7              62
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RP1L1 MUTATED       13      5      4      7
  RP1L1 WILD-TYPE     82     69    117     73
D662V6, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1            13              82
  CLUS_2             5              69
  CLUS_3             4             117
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RP1L1 MUTATED        5      7      7      4      6      2
  RP1L1 WILD-TYPE     47     57     65    100     34     57
D662V7, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             7              57
  CLUS_3             7              65
  CLUS_4             4             100
  CLUS_5             6              34
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RP1L1 MUTATED       24      3      4
  RP1L1 WILD-TYPE    193     72     95
D662V8, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1            24             193
  CLUS_2             3              72
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RP1L1 MUTATED       11      4      8
  RP1L1 WILD-TYPE    110    104     64
D662V9, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1            11             110
  CLUS_2             4             104
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RP1L1 MUTATED        8      3      4      3      5
  RP1L1 WILD-TYPE     80     63     41     52     42
D662V10, multiclass
        clus
vv       RP1L1 MUTATED RP1L1 WILD-TYPE
  CLUS_1             8              80
  CLUS_2             3              63
  CLUS_3             4              41
  CLUS_4             3              52
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(663) Variable = UVRAG MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UVRAG MUTATED        1     11      0      0
  UVRAG WILD-TYPE    203    126     47      3
D663V1, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             1             203
  CLUS_2            11             126
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UVRAG MUTATED        0      3      2      0      2
  UVRAG WILD-TYPE     39     93     42     88     78
D663V2, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UVRAG MUTATED        1      7      1      0      3
  UVRAG WILD-TYPE     25     72     72     82     55
D663V3, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             1              25
  CLUS_2             7              72
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UVRAG MUTATED        2      6      4      0
  UVRAG WILD-TYPE    125     45     67     69
D663V4, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             2             125
  CLUS_2             6              45
  CLUS_3             4              67
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UVRAG MUTATED        0      2      7      1      1
  UVRAG WILD-TYPE     84     83     78     68     46
D663V5, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             7              78
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UVRAG MUTATED        3      2      2      4
  UVRAG WILD-TYPE     92     72    119     76
D663V6, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UVRAG MUTATED        1      9      0      2      0      0
  UVRAG WILD-TYPE     51     55     72    102     40     59
D663V7, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             1              51
  CLUS_2             9              55
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UVRAG MUTATED       11      1      0
  UVRAG WILD-TYPE    206     74     99
D663V8, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1            11             206
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UVRAG MUTATED        1      2      4
  UVRAG WILD-TYPE    120    106     68
D663V9, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             1             120
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UVRAG MUTATED        2      0      4      0      1
  UVRAG WILD-TYPE     86     66     41     55     46
D663V10, multiclass
        clus
vv       UVRAG MUTATED UVRAG WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(664) Variable = CHD1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD1 MUTATED        3      7      3      0
  CHD1 WILD-TYPE    201    130     44      3
D664V1, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            3            201
  CLUS_2            7            130
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHD1 MUTATED        2      5      0      0      3
  CHD1 WILD-TYPE     37     91     44     88     77
D664V2, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            5             91
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHD1 MUTATED        1      2      4      1      3
  CHD1 WILD-TYPE     25     77     69     81     55
D664V3, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            2             77
  CLUS_3            4             69
  CLUS_4            1             81
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD1 MUTATED        6      5      0      0
  CHD1 WILD-TYPE    121     46     71     69
D664V4, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            6            121
  CLUS_2            5             46
  CLUS_3            0             71
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHD1 MUTATED        0      1      5      3      2
  CHD1 WILD-TYPE     84     84     80     66     45
D664V5, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            5             80
  CLUS_4            3             66
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD1 MUTATED        7      0      1      3
  CHD1 WILD-TYPE     88     74    120     77
D664V6, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            7             88
  CLUS_2            0             74
  CLUS_3            1            120
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHD1 MUTATED        2      6      2      1      2      0
  CHD1 WILD-TYPE     50     58     70    103     38     59
D664V7, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            6             58
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD1 MUTATED       11      1      1
  CHD1 WILD-TYPE    206     74     98
D664V8, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1           11            206
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD1 MUTATED        5      1      4
  CHD1 WILD-TYPE    116    107     68
D664V9, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            1            107
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHD1 MUTATED        3      1      3      0      3
  CHD1 WILD-TYPE     85     65     42     55     44
D664V10, multiclass
        clus
vv       CHD1 MUTATED CHD1 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(665) Variable = ZMYND8 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYND8 MUTATED        2     16      1      0
  ZMYND8 WILD-TYPE    202    121     46      3
D665V1, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              2              202
  CLUS_2             16              121
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYND8 MUTATED        1     13      2      0      1
  ZMYND8 WILD-TYPE     38     83     42     88     79
D665V2, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              1               38
  CLUS_2             13               83
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYND8 MUTATED        0      4      7      1      3
  ZMYND8 WILD-TYPE     26     75     66     81     55
D665V3, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              7               66
  CLUS_4              1               81
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYND8 MUTATED        2      9      3      1
  ZMYND8 WILD-TYPE    125     42     68     68
D665V4, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              9               42
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYND8 MUTATED        0      2     10      5      1
  ZMYND8 WILD-TYPE     84     83     75     64     46
D665V5, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3             10               75
  CLUS_4              5               64
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYND8 MUTATED        5      3      2      8
  ZMYND8 WILD-TYPE     90     71    119     72
D665V6, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              5               90
  CLUS_2              3               71
  CLUS_3              2              119
  CLUS_4              8               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMYND8 MUTATED        9      6      1      2      1      0
  ZMYND8 WILD-TYPE     43     58     71    102     39     59
D665V7, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              9               43
  CLUS_2              6               58
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZMYND8 MUTATED       17      1      1
  ZMYND8 WILD-TYPE    200     74     98
D665V8, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1             17              200
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZMYND8 MUTATED        9      2      5
  ZMYND8 WILD-TYPE    112    106     67
D665V9, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              9              112
  CLUS_2              2              106
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYND8 MUTATED        4      1      4      0      7
  ZMYND8 WILD-TYPE     84     65     41     55     40
D665V10, multiclass
        clus
vv       ZMYND8 MUTATED ZMYND8 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              1               65
  CLUS_3              4               41
  CLUS_4              0               55
  CLUS_5              7               40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(666) Variable = GPATCH4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH4 MUTATED        3      4      2      0
  GPATCH4 WILD-TYPE    201    133     45      3
D666V1, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               3               201
  CLUS_2               4               133
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH4 MUTATED        0      5      0      2      0
  GPATCH4 WILD-TYPE     39     91     44     86     80
D666V2, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               5                91
  CLUS_3               0                44
  CLUS_4               2                86
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH4 MUTATED        0      3      3      0      1
  GPATCH4 WILD-TYPE     26     76     70     82     57
D666V3, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               3                76
  CLUS_3               3                70
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH4 MUTATED        2      4      1      0
  GPATCH4 WILD-TYPE    125     47     70     69
D666V4, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               4                47
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH4 MUTATED        3      0      5      1      0
  GPATCH4 WILD-TYPE     81     85     80     68     47
D666V5, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               3                81
  CLUS_2               0                85
  CLUS_3               5                80
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH4 MUTATED        2      1      2      4
  GPATCH4 WILD-TYPE     93     73    119     76
D666V6, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               2               119
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPATCH4 MUTATED        3      1      3      0      0      2
  GPATCH4 WILD-TYPE     49     63     69    104     40     57
D666V7, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               1                63
  CLUS_3               3                69
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               2                57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH4 MUTATED        7      0      2
  GPATCH4 WILD-TYPE    210     75     97
D666V8, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               7               210
  CLUS_2               0                75
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH4 MUTATED        3      0      3
  GPATCH4 WILD-TYPE    118    108     69
D666V9, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               0               108
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH4 MUTATED        1      0      1      0      4
  GPATCH4 WILD-TYPE     87     66     44     55     43
D666V10, multiclass
        clus
vv       GPATCH4 MUTATED GPATCH4 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(667) Variable = MASTL MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MASTL MUTATED        3      9      1      0
  MASTL WILD-TYPE    201    128     46      3
D667V1, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             3             201
  CLUS_2             9             128
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MASTL MUTATED        1      4      4      1      2
  MASTL WILD-TYPE     38     92     40     87     78
D667V2, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              92
  CLUS_3             4              40
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MASTL MUTATED        1      3      5      1      2
  MASTL WILD-TYPE     25     76     68     81     56
D667V3, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MASTL MUTATED        3      4      3      2
  MASTL WILD-TYPE    124     47     68     67
D667V4, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             3             124
  CLUS_2             4              47
  CLUS_3             3              68
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MASTL MUTATED        0      1      9      1      1
  MASTL WILD-TYPE     84     84     76     68     46
D667V5, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             9              76
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MASTL MUTATED        4      2      3      3
  MASTL WILD-TYPE     91     72    118     77
D667V6, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             3             118
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MASTL MUTATED        3      6      2      2      0      0
  MASTL WILD-TYPE     49     58     70    102     40     59
D667V7, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             3              49
  CLUS_2             6              58
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MASTL MUTATED       11      1      1
  MASTL WILD-TYPE    206     74     98
D667V8, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1            11             206
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MASTL MUTATED        3      1      8
  MASTL WILD-TYPE    118    107     64
D667V9, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MASTL MUTATED        2      1      5      1      3
  MASTL WILD-TYPE     86     65     40     54     44
D667V10, multiclass
        clus
vv       MASTL MUTATED MASTL WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             5              40
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(668) Variable = KIRREL2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL2 MUTATED        2     12      2      0
  KIRREL2 WILD-TYPE    202    125     45      3
D668V1, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               2               202
  CLUS_2              12               125
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL2 MUTATED        2     11      1      0      1
  KIRREL2 WILD-TYPE     37     85     43     88     79
D668V2, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               2                37
  CLUS_2              11                85
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL2 MUTATED        1      3      4      0      4
  KIRREL2 WILD-TYPE     25     76     69     82     54
D668V3, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                76
  CLUS_3               4                69
  CLUS_4               0                82
  CLUS_5               4                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL2 MUTATED        4      7      1      0
  KIRREL2 WILD-TYPE    123     44     70     69
D668V4, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               4               123
  CLUS_2               7                44
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL2 MUTATED        1      2      7      1      5
  KIRREL2 WILD-TYPE     83     83     78     68     42
D668V5, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               2                83
  CLUS_3               7                78
  CLUS_4               1                68
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIRREL2 MUTATED        4      0      2     10
  KIRREL2 WILD-TYPE     91     74    119     70
D668V6, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               0                74
  CLUS_3               2               119
  CLUS_4              10                70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIRREL2 MUTATED        6      5      3      1      1      0
  KIRREL2 WILD-TYPE     46     59     69    103     39     59
D668V7, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               6                46
  CLUS_2               5                59
  CLUS_3               3                69
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KIRREL2 MUTATED       13      2      1
  KIRREL2 WILD-TYPE    204     73     98
D668V8, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1              13               204
  CLUS_2               2                73
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  KIRREL2 MUTATED        6      2      6
  KIRREL2 WILD-TYPE    115    106     66
D668V9, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               6               115
  CLUS_2               2               106
  CLUS_3               6                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIRREL2 MUTATED        3      1      3      0      7
  KIRREL2 WILD-TYPE     85     65     42     55     40
D668V10, multiclass
        clus
vv       KIRREL2 MUTATED KIRREL2 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               1                65
  CLUS_3               3                42
  CLUS_4               0                55
  CLUS_5               7                40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(669) Variable = HSPB8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPB8 MUTATED        0      6      0      0
  HSPB8 WILD-TYPE    204    131     47      3
D669V1, multiclass
        clus
vv       HSPB8 MUTATED HSPB8 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             6             131
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSPB8 MUTATED        0      5      1      0      0
  HSPB8 WILD-TYPE     39     91     43     88     80
D669V2, multiclass
        clus
vv       HSPB8 MUTATED HSPB8 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSPB8 MUTATED        0      1      3      0      0
  HSPB8 WILD-TYPE     26     78     70     82     58
D669V3, multiclass
        clus
vv       HSPB8 MUTATED HSPB8 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPB8 MUTATED        0      4      0      0
  HSPB8 WILD-TYPE    127     47     71     69
D669V4, multiclass
        clus
vv       HSPB8 MUTATED HSPB8 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             4              47
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSPB8 MUTATED        0      0      5      0      1
  HSPB8 WILD-TYPE     84     85     80     69     46
D669V5, multiclass
        clus
vv       HSPB8 MUTATED HSPB8 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSPB8 MUTATED        1      0      0      5
  HSPB8 WILD-TYPE     94     74    121     75
D669V6, multiclass
        clus
vv       HSPB8 MUTATED HSPB8 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HSPB8 MUTATED        3      2      1      0      0      0
  HSPB8 WILD-TYPE     49     62     71    104     40     59
D669V7, multiclass
        clus
vv       HSPB8 MUTATED HSPB8 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HSPB8 MUTATED        5      0      1
  HSPB8 WILD-TYPE    212     75     98
D669V8, multiclass
        clus
vv       HSPB8 MUTATED HSPB8 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HSPB8 MUTATED        4      0      1
  HSPB8 WILD-TYPE    117    108     71
D669V9, multiclass
        clus
vv       HSPB8 MUTATED HSPB8 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             0             108
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSPB8 MUTATED        2      0      1      0      2
  HSPB8 WILD-TYPE     86     66     44     55     45
D669V10, multiclass
        clus
vv       HSPB8 MUTATED HSPB8 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(670) Variable = GTF3C4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C4 MUTATED        1     12      0      0
  GTF3C4 WILD-TYPE    203    125     47      3
D670V1, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             12              125
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF3C4 MUTATED        1      7      2      0      1
  GTF3C4 WILD-TYPE     38     89     42     88     79
D670V2, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              7               89
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF3C4 MUTATED        0      6      4      1      1
  GTF3C4 WILD-TYPE     26     73     69     81     57
D670V3, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              6               73
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C4 MUTATED        2      3      6      1
  GTF3C4 WILD-TYPE    125     48     65     68
D670V4, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              3               48
  CLUS_3              6               65
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF3C4 MUTATED        0      3      5      1      3
  GTF3C4 WILD-TYPE     84     82     80     68     44
D670V5, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3              5               80
  CLUS_4              1               68
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GTF3C4 MUTATED        2      2      1      7
  GTF3C4 WILD-TYPE     93     72    120     73
D670V6, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GTF3C4 MUTATED        4      4      1      3      1      0
  GTF3C4 WILD-TYPE     48     60     71    101     39     59
D670V7, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              3              101
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C4 MUTATED       10      3      0
  GTF3C4 WILD-TYPE    207     72     99
D670V8, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1             10              207
  CLUS_2              3               72
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GTF3C4 MUTATED        4      1      5
  GTF3C4 WILD-TYPE    117    107     67
D670V9, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              1              107
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GTF3C4 MUTATED        2      1      2      0      5
  GTF3C4 WILD-TYPE     86     65     43     55     42
D670V10, multiclass
        clus
vv       GTF3C4 MUTATED GTF3C4 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(671) Variable = PPP3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP3CA MUTATED        2      8      2      0
  PPP3CA WILD-TYPE    202    129     45      3
D671V1, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              2              202
  CLUS_2              8              129
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP3CA MUTATED        0      5      2      1      1
  PPP3CA WILD-TYPE     39     91     42     87     79
D671V2, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP3CA MUTATED        2      4      2      1      1
  PPP3CA WILD-TYPE     24     75     71     81     57
D671V3, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              2               24
  CLUS_2              4               75
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP3CA MUTATED        4      3      2      1
  PPP3CA WILD-TYPE    123     48     69     68
D671V4, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              4              123
  CLUS_2              3               48
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP3CA MUTATED        1      2      6      0      2
  PPP3CA WILD-TYPE     83     83     79     69     45
D671V5, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              6               79
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP3CA MUTATED        3      0      3      5
  PPP3CA WILD-TYPE     92     74    118     75
D671V6, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              3               92
  CLUS_2              0               74
  CLUS_3              3              118
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPP3CA MUTATED        2      3      5      1      0      1
  PPP3CA WILD-TYPE     50     61     67    103     40     58
D671V7, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              2               50
  CLUS_2              3               61
  CLUS_3              5               67
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PPP3CA MUTATED        9      1      2
  PPP3CA WILD-TYPE    208     74     97
D671V8, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              9              208
  CLUS_2              1               74
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PPP3CA MUTATED        5      1      2
  PPP3CA WILD-TYPE    116    107     70
D671V9, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              5              116
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP3CA MUTATED        4      0      1      0      3
  PPP3CA WILD-TYPE     84     66     44     55     44
D671V10, multiclass
        clus
vv       PPP3CA MUTATED PPP3CA WILD-TYPE
  CLUS_1              4               84
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(672) Variable = NOB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOB1 MUTATED        1      5      1      0
  NOB1 WILD-TYPE    203    132     46      3
D672V1, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            5            132
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOB1 MUTATED        0      3      1      0      0
  NOB1 WILD-TYPE     39     93     43     88     80
D672V2, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOB1 MUTATED        0      2      0      0      2
  NOB1 WILD-TYPE     26     77     73     82     56
D672V3, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            0             73
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOB1 MUTATED        2      1      1      0
  NOB1 WILD-TYPE    125     50     70     69
D672V4, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            1             50
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOB1 MUTATED        0      1      3      2      1
  NOB1 WILD-TYPE     84     84     82     67     46
D672V5, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            3             82
  CLUS_4            2             67
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOB1 MUTATED        3      2      0      2
  NOB1 WILD-TYPE     92     72    121     78
D672V6, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOB1 MUTATED        1      4      1      0      1      0
  NOB1 WILD-TYPE     51     60     71    104     39     59
D672V7, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            4             60
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOB1 MUTATED        6      0      1
  NOB1 WILD-TYPE    211     75     98
D672V8, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            6            211
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOB1 MUTATED        3      0      1
  NOB1 WILD-TYPE    118    108     71
D672V9, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOB1 MUTATED        1      0      1      0      2
  NOB1 WILD-TYPE     87     66     44     55     45
D672V10, multiclass
        clus
vv       NOB1 MUTATED NOB1 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(673) Variable = C15ORF52 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF52 MUTATED        0      5      1      0
  C15ORF52 WILD-TYPE    204    132     46      3
D673V1, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                0                204
  CLUS_2                5                132
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C15ORF52 MUTATED        0      5      0      0      0
  C15ORF52 WILD-TYPE     39     91     44     88     80
D673V2, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                5                 91
  CLUS_3                0                 44
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C15ORF52 MUTATED        0      3      0      0      2
  C15ORF52 WILD-TYPE     26     76     73     82     56
D673V3, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                3                 76
  CLUS_3                0                 73
  CLUS_4                0                 82
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF52 MUTATED        1      2      2      0
  C15ORF52 WILD-TYPE    126     49     69     69
D673V4, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                1                126
  CLUS_2                2                 49
  CLUS_3                2                 69
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C15ORF52 MUTATED        0      1      3      1      1
  C15ORF52 WILD-TYPE     84     84     82     68     46
D673V5, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                3                 82
  CLUS_4                1                 68
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C15ORF52 MUTATED        1      1      0      4
  C15ORF52 WILD-TYPE     94     73    121     76
D673V6, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                1                 73
  CLUS_3                0                121
  CLUS_4                4                 76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C15ORF52 MUTATED        3      1      1      1      0      0
  C15ORF52 WILD-TYPE     49     63     71    103     40     59
D673V7, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                1                 63
  CLUS_3                1                 71
  CLUS_4                1                103
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        6      0      0
  C15ORF52 WILD-TYPE    211     75     99
D673V8, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                6                211
  CLUS_2                0                 75
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C15ORF52 MUTATED        3      1      1
  C15ORF52 WILD-TYPE    118    107     71
D673V9, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                3                118
  CLUS_2                1                107
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C15ORF52 MUTATED        2      0      0      0      3
  C15ORF52 WILD-TYPE     86     66     45     55     44
D673V10, multiclass
        clus
vv       C15ORF52 MUTATED C15ORF52 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                0                 66
  CLUS_3                0                 45
  CLUS_4                0                 55
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(674) Variable = MEN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEN1 MUTATED        2      8      0      0
  MEN1 WILD-TYPE    202    129     47      3
D674V1, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            2            202
  CLUS_2            8            129
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEN1 MUTATED        1      4      1      1      1
  MEN1 WILD-TYPE     38     92     43     87     79
D674V2, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            4             92
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEN1 MUTATED        1      3      2      0      2
  MEN1 WILD-TYPE     25     76     71     82     56
D674V3, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEN1 MUTATED        2      3      3      0
  MEN1 WILD-TYPE    125     48     68     69
D674V4, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            3             48
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEN1 MUTATED        0      1      3      2      4
  MEN1 WILD-TYPE     84     84     82     67     43
D674V5, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            3             82
  CLUS_4            2             67
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEN1 MUTATED        4      0      2      4
  MEN1 WILD-TYPE     91     74    119     76
D674V6, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            0             74
  CLUS_3            2            119
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MEN1 MUTATED        3      4      1      2      0      0
  MEN1 WILD-TYPE     49     60     71    102     40     59
D674V7, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            4             60
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MEN1 MUTATED        9      1      0
  MEN1 WILD-TYPE    208     74     99
D674V8, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            9            208
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MEN1 MUTATED        3      2      3
  MEN1 WILD-TYPE    118    106     69
D674V9, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            2            106
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEN1 MUTATED        2      1      2      0      3
  MEN1 WILD-TYPE     86     65     43     55     44
D674V10, multiclass
        clus
vv       MEN1 MUTATED MEN1 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            1             65
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(675) Variable = MAPK15 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK15 MUTATED        0      7      1      0
  MAPK15 WILD-TYPE    204    130     46      3
D675V1, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              7              130
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAPK15 MUTATED        0      3      1      0      0
  MAPK15 WILD-TYPE     39     93     43     88     80
D675V2, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAPK15 MUTATED        0      1      1      1      4
  MAPK15 WILD-TYPE     26     78     72     81     54
D675V3, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK15 MUTATED        2      3      1      1
  MAPK15 WILD-TYPE    125     48     70     68
D675V4, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              3               48
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAPK15 MUTATED        0      1      4      1      1
  MAPK15 WILD-TYPE     84     84     81     68     46
D675V5, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAPK15 MUTATED        3      1      0      3
  MAPK15 WILD-TYPE     92     73    121     77
D675V6, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAPK15 MUTATED        0      5      2      1      0      0
  MAPK15 WILD-TYPE     52     59     70    103     40     59
D675V7, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              5               59
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAPK15 MUTATED        6      1      1
  MAPK15 WILD-TYPE    211     74     98
D675V8, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAPK15 MUTATED        2      0      2
  MAPK15 WILD-TYPE    119    108     70
D675V9, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAPK15 MUTATED        1      1      1      0      1
  MAPK15 WILD-TYPE     87     65     44     55     46
D675V10, multiclass
        clus
vv       MAPK15 MUTATED MAPK15 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(676) Variable = DDX50 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX50 MUTATED        0     11      1      0
  DDX50 WILD-TYPE    204    126     46      3
D676V1, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX50 MUTATED        0      9      0      0      1
  DDX50 WILD-TYPE     39     87     44     88     79
D676V2, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             9              87
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX50 MUTATED        1      1      4      1      2
  DDX50 WILD-TYPE     25     78     69     81     56
D676V3, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX50 MUTATED        1      6      1      1
  DDX50 WILD-TYPE    126     45     70     68
D676V4, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             6              45
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX50 MUTATED        0      2      7      1      2
  DDX50 WILD-TYPE     84     83     78     68     45
D676V5, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             7              78
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX50 MUTATED        1      3      1      7
  DDX50 WILD-TYPE     94     71    120     73
D676V6, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             3              71
  CLUS_3             1             120
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX50 MUTATED        4      3      4      1      0      0
  DDX50 WILD-TYPE     48     61     68    103     40     59
D676V7, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             3              61
  CLUS_3             4              68
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX50 MUTATED       11      1      0
  DDX50 WILD-TYPE    206     74     99
D676V8, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX50 MUTATED        6      1      3
  DDX50 WILD-TYPE    115    107     69
D676V9, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX50 MUTATED        2      1      1      0      6
  DDX50 WILD-TYPE     86     65     44     55     41
D676V10, multiclass
        clus
vv       DDX50 MUTATED DDX50 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(677) Variable = ATP6V1H MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1H MUTATED        3      9      1      0
  ATP6V1H WILD-TYPE    201    128     46      3
D677V1, multiclass
        clus
vv       ATP6V1H MUTATED ATP6V1H WILD-TYPE
  CLUS_1               3               201
  CLUS_2               9               128
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1H MUTATED        2      7      1      0      1
  ATP6V1H WILD-TYPE     37     89     43     88     79
D677V2, multiclass
        clus
vv       ATP6V1H MUTATED ATP6V1H WILD-TYPE
  CLUS_1               2                37
  CLUS_2               7                89
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1H MUTATED        1      4      2      2      3
  ATP6V1H WILD-TYPE     25     75     71     80     55
D677V3, multiclass
        clus
vv       ATP6V1H MUTATED ATP6V1H WILD-TYPE
  CLUS_1               1                25
  CLUS_2               4                75
  CLUS_3               2                71
  CLUS_4               2                80
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1H MUTATED        1      7      2      2
  ATP6V1H WILD-TYPE    126     44     69     67
D677V4, multiclass
        clus
vv       ATP6V1H MUTATED ATP6V1H WILD-TYPE
  CLUS_1               1               126
  CLUS_2               7                44
  CLUS_3               2                69
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1H MUTATED        1      4      5      0      2
  ATP6V1H WILD-TYPE     83     81     80     69     45
D677V5, multiclass
        clus
vv       ATP6V1H MUTATED ATP6V1H WILD-TYPE
  CLUS_1               1                83
  CLUS_2               4                81
  CLUS_3               5                80
  CLUS_4               0                69
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP6V1H MUTATED        2      3      2      5
  ATP6V1H WILD-TYPE     93     71    119     75
D677V6, multiclass
        clus
vv       ATP6V1H MUTATED ATP6V1H WILD-TYPE
  CLUS_1               2                93
  CLUS_2               3                71
  CLUS_3               2               119
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP6V1H MUTATED        3      2      4      3      1      0
  ATP6V1H WILD-TYPE     49     62     68    101     39     59
D677V7, multiclass
        clus
vv       ATP6V1H MUTATED ATP6V1H WILD-TYPE
  CLUS_1               3                49
  CLUS_2               2                62
  CLUS_3               4                68
  CLUS_4               3               101
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP6V1H MUTATED       10      3      0
  ATP6V1H WILD-TYPE    207     72     99
D677V8, multiclass
        clus
vv       ATP6V1H MUTATED ATP6V1H WILD-TYPE
  CLUS_1              10               207
  CLUS_2               3                72
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ATP6V1H MUTATED        6      2      1
  ATP6V1H WILD-TYPE    115    106     71
D677V9, multiclass
        clus
vv       ATP6V1H MUTATED ATP6V1H WILD-TYPE
  CLUS_1               6               115
  CLUS_2               2               106
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP6V1H MUTATED        2      2      1      0      4
  ATP6V1H WILD-TYPE     86     64     44     55     43
D677V10, multiclass
        clus
vv       ATP6V1H MUTATED ATP6V1H WILD-TYPE
  CLUS_1               2                86
  CLUS_2               2                64
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(678) Variable = KIAA1609 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1609 MUTATED        1      7      0      0
  KIAA1609 WILD-TYPE    203    130     47      3
D678V1, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                7                130
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1609 MUTATED        0      5      1      0      1
  KIAA1609 WILD-TYPE     39     91     43     88     79
D678V2, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                5                 91
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1609 MUTATED        1      1      3      1      0
  KIAA1609 WILD-TYPE     25     78     70     81     58
D678V3, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                 78
  CLUS_3                3                 70
  CLUS_4                1                 81
  CLUS_5                0                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1609 MUTATED        1      4      0      1
  KIAA1609 WILD-TYPE    126     47     71     68
D678V4, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                1                126
  CLUS_2                4                 47
  CLUS_3                0                 71
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1609 MUTATED        0      1      6      1      0
  KIAA1609 WILD-TYPE     84     84     79     68     47
D678V5, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                6                 79
  CLUS_4                1                 68
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1609 MUTATED        1      1      1      5
  KIAA1609 WILD-TYPE     94     73    120     75
D678V6, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                5                 75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1609 MUTATED        3      2      1      2      0      0
  KIAA1609 WILD-TYPE     49     62     71    102     40     59
D678V7, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                2                 62
  CLUS_3                1                 71
  CLUS_4                2                102
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1609 MUTATED        6      1      1
  KIAA1609 WILD-TYPE    211     74     98
D678V8, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                6                211
  CLUS_2                1                 74
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1609 MUTATED        4      0      1
  KIAA1609 WILD-TYPE    117    108     71
D678V9, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                0                108
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1609 MUTATED        2      0      1      0      2
  KIAA1609 WILD-TYPE     86     66     44     55     45
D678V10, multiclass
        clus
vv       KIAA1609 MUTATED KIAA1609 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                0                 66
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(679) Variable = ITPR2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR2 MUTATED        6     19      2      0
  ITPR2 WILD-TYPE    198    118     45      3
D679V1, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             6             198
  CLUS_2            19             118
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITPR2 MUTATED        2     11      3      3      2
  ITPR2 WILD-TYPE     37     85     41     85     78
D679V2, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            11              85
  CLUS_3             3              41
  CLUS_4             3              85
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITPR2 MUTATED        2      7      6      1      4
  ITPR2 WILD-TYPE     24     72     67     81     54
D679V3, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             7              72
  CLUS_3             6              67
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR2 MUTATED        4     12      2      2
  ITPR2 WILD-TYPE    123     39     69     67
D679V4, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             4             123
  CLUS_2            12              39
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITPR2 MUTATED        3      5     13      2      3
  ITPR2 WILD-TYPE     81     80     72     67     44
D679V5, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             5              80
  CLUS_3            13              72
  CLUS_4             2              67
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITPR2 MUTATED        9      3      6      8
  ITPR2 WILD-TYPE     86     71    115     72
D679V6, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             9              86
  CLUS_2             3              71
  CLUS_3             6             115
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ITPR2 MUTATED        4     10      5      2      3      3
  ITPR2 WILD-TYPE     48     54     67    102     37     56
D679V7, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             4              48
  CLUS_2            10              54
  CLUS_3             5              67
  CLUS_4             2             102
  CLUS_5             3              37
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITPR2 MUTATED       18      3      6
  ITPR2 WILD-TYPE    199     72     93
D679V8, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1            18             199
  CLUS_2             3              72
  CLUS_3             6              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITPR2 MUTATED        9      2      7
  ITPR2 WILD-TYPE    112    106     65
D679V9, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             9             112
  CLUS_2             2             106
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITPR2 MUTATED        3      1      5      1      8
  ITPR2 WILD-TYPE     85     65     40     54     39
D679V10, multiclass
        clus
vv       ITPR2 MUTATED ITPR2 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             5              40
  CLUS_4             1              54
  CLUS_5             8              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(680) Variable = NUP35 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP35 MUTATED        2      4      0      0
  NUP35 WILD-TYPE    202    133     47      3
D680V1, multiclass
        clus
vv       NUP35 MUTATED NUP35 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             4             133
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUP35 MUTATED        1      2      1      0      1
  NUP35 WILD-TYPE     38     94     43     88     79
D680V2, multiclass
        clus
vv       NUP35 MUTATED NUP35 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             2              94
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUP35 MUTATED        0      1      1      1      0
  NUP35 WILD-TYPE     26     78     72     81     58
D680V3, multiclass
        clus
vv       NUP35 MUTATED NUP35 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP35 MUTATED        1      0      1      1
  NUP35 WILD-TYPE    126     51     70     68
D680V4, multiclass
        clus
vv       NUP35 MUTATED NUP35 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             0              51
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUP35 MUTATED        1      0      3      2      0
  NUP35 WILD-TYPE     83     85     82     67     47
D680V5, multiclass
        clus
vv       NUP35 MUTATED NUP35 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             2              67
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP35 MUTATED        3      0      1      2
  NUP35 WILD-TYPE     92     74    120     78
D680V6, multiclass
        clus
vv       NUP35 MUTATED NUP35 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NUP35 MUTATED        1      2      1      2      0      0
  NUP35 WILD-TYPE     51     62     71    102     40     59
D680V7, multiclass
        clus
vv       NUP35 MUTATED NUP35 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUP35 MUTATED        3      1      2
  NUP35 WILD-TYPE    214     74     97
D680V8, multiclass
        clus
vv       NUP35 MUTATED NUP35 WILD-TYPE
  CLUS_1             3             214
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUP35 MUTATED        4      0      1
  NUP35 WILD-TYPE    117    108     71
D680V9, multiclass
        clus
vv       NUP35 MUTATED NUP35 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             0             108
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUP35 MUTATED        2      0      1      1      1
  NUP35 WILD-TYPE     86     66     44     54     46
D680V10, multiclass
        clus
vv       NUP35 MUTATED NUP35 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(681) Variable = LIMCH1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIMCH1 MUTATED        4      8      0      0
  LIMCH1 WILD-TYPE    200    129     47      3
D681V1, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              4              200
  CLUS_2              8              129
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LIMCH1 MUTATED        0      8      2      1      1
  LIMCH1 WILD-TYPE     39     88     42     87     79
D681V2, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              8               88
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LIMCH1 MUTATED        0      2      3      1      2
  LIMCH1 WILD-TYPE     26     77     70     81     56
D681V3, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIMCH1 MUTATED        3      3      1      1
  LIMCH1 WILD-TYPE    124     48     70     68
D681V4, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              3               48
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LIMCH1 MUTATED        0      2      7      0      2
  LIMCH1 WILD-TYPE     84     83     78     69     45
D681V5, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              7               78
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LIMCH1 MUTATED        1      3      3      4
  LIMCH1 WILD-TYPE     94     71    118     76
D681V6, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              3               71
  CLUS_3              3              118
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LIMCH1 MUTATED        3      2      1      4      2      0
  LIMCH1 WILD-TYPE     49     62     71    100     38     59
D681V7, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              4              100
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LIMCH1 MUTATED        8      3      1
  LIMCH1 WILD-TYPE    209     72     98
D681V8, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              8              209
  CLUS_2              3               72
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LIMCH1 MUTATED        3      5      4
  LIMCH1 WILD-TYPE    118    103     68
D681V9, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              5              103
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LIMCH1 MUTATED        5      3      2      0      2
  LIMCH1 WILD-TYPE     83     63     43     55     45
D681V10, multiclass
        clus
vv       LIMCH1 MUTATED LIMCH1 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              3               63
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(682) Variable = NAGPA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAGPA MUTATED        2      5      0      0
  NAGPA WILD-TYPE    202    132     47      3
D682V1, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             2             202
  CLUS_2             5             132
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAGPA MUTATED        0      4      1      2      0
  NAGPA WILD-TYPE     39     92     43     86     80
D682V2, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             2              86
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAGPA MUTATED        1      2      2      0      0
  NAGPA WILD-TYPE     25     77     71     82     58
D682V3, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAGPA MUTATED        2      1      2      0
  NAGPA WILD-TYPE    125     50     69     69
D682V4, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             2             125
  CLUS_2             1              50
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAGPA MUTATED        0      1      2      1      2
  NAGPA WILD-TYPE     84     84     83     68     45
D682V5, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             2              83
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAGPA MUTATED        1      1      0      4
  NAGPA WILD-TYPE     94     73    121     76
D682V6, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAGPA MUTATED        3      2      0      1      1      0
  NAGPA WILD-TYPE     49     62     72    103     39     59
D682V7, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             3              49
  CLUS_2             2              62
  CLUS_3             0              72
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAGPA MUTATED        6      0      1
  NAGPA WILD-TYPE    211     75     98
D682V8, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAGPA MUTATED        3      0      4
  NAGPA WILD-TYPE    118    108     68
D682V9, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAGPA MUTATED        1      0      2      0      4
  NAGPA WILD-TYPE     87     66     43     55     43
D682V10, multiclass
        clus
vv       NAGPA MUTATED NAGPA WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(683) Variable = PDS5A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDS5A MUTATED        2     13      1      0
  PDS5A WILD-TYPE    202    124     46      3
D683V1, multiclass
        clus
vv       PDS5A MUTATED PDS5A WILD-TYPE
  CLUS_1             2             202
  CLUS_2            13             124
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDS5A MUTATED        1      8      3      1      2
  PDS5A WILD-TYPE     38     88     41     87     78
D683V2, multiclass
        clus
vv       PDS5A MUTATED PDS5A WILD-TYPE
  CLUS_1             1              38
  CLUS_2             8              88
  CLUS_3             3              41
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDS5A MUTATED        1      4      2      1      3
  PDS5A WILD-TYPE     25     75     71     81     55
D683V3, multiclass
        clus
vv       PDS5A MUTATED PDS5A WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDS5A MUTATED        4      5      2      0
  PDS5A WILD-TYPE    123     46     69     69
D683V4, multiclass
        clus
vv       PDS5A MUTATED PDS5A WILD-TYPE
  CLUS_1             4             123
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDS5A MUTATED        1      2      9      3      0
  PDS5A WILD-TYPE     83     83     76     66     47
D683V5, multiclass
        clus
vv       PDS5A MUTATED PDS5A WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             9              76
  CLUS_4             3              66
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDS5A MUTATED        4      1      3      7
  PDS5A WILD-TYPE     91     73    118     73
D683V6, multiclass
        clus
vv       PDS5A MUTATED PDS5A WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             3             118
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PDS5A MUTATED        6      5      3      2      0      1
  PDS5A WILD-TYPE     46     59     69    102     40     58
D683V7, multiclass
        clus
vv       PDS5A MUTATED PDS5A WILD-TYPE
  CLUS_1             6              46
  CLUS_2             5              59
  CLUS_3             3              69
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDS5A MUTATED       15      1      1
  PDS5A WILD-TYPE    202     74     98
D683V8, multiclass
        clus
vv       PDS5A MUTATED PDS5A WILD-TYPE
  CLUS_1            15             202
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDS5A MUTATED        8      1      5
  PDS5A WILD-TYPE    113    107     67
D683V9, multiclass
        clus
vv       PDS5A MUTATED PDS5A WILD-TYPE
  CLUS_1             8             113
  CLUS_2             1             107
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDS5A MUTATED        4      1      3      1      5
  PDS5A WILD-TYPE     84     65     42     54     42
D683V10, multiclass
        clus
vv       PDS5A MUTATED PDS5A WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(684) Variable = CEP110 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP110 MUTATED        2     11      2      0
  CEP110 WILD-TYPE    202    126     45      3
D684V1, multiclass
        clus
vv       CEP110 MUTATED CEP110 WILD-TYPE
  CLUS_1              2              202
  CLUS_2             11              126
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP110 MUTATED        1     10      1      1      1
  CEP110 WILD-TYPE     38     86     43     87     79
D684V2, multiclass
        clus
vv       CEP110 MUTATED CEP110 WILD-TYPE
  CLUS_1              1               38
  CLUS_2             10               86
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP110 MUTATED        2      2      3      1      5
  CEP110 WILD-TYPE     24     77     70     81     53
D684V3, multiclass
        clus
vv       CEP110 MUTATED CEP110 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              2               77
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              5               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP110 MUTATED        4      5      1      3
  CEP110 WILD-TYPE    123     46     70     66
D684V4, multiclass
        clus
vv       CEP110 MUTATED CEP110 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              5               46
  CLUS_3              1               70
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP110 MUTATED        1      3      4      4      2
  CEP110 WILD-TYPE     83     82     81     65     45
D684V5, multiclass
        clus
vv       CEP110 MUTATED CEP110 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               82
  CLUS_3              4               81
  CLUS_4              4               65
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP110 MUTATED        5      3      0      6
  CEP110 WILD-TYPE     90     71    121     74
D684V6, multiclass
        clus
vv       CEP110 MUTATED CEP110 WILD-TYPE
  CLUS_1              5               90
  CLUS_2              3               71
  CLUS_3              0              121
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEP110 MUTATED        5      3      3      2      1      1
  CEP110 WILD-TYPE     47     61     69    102     39     58
D684V7, multiclass
        clus
vv       CEP110 MUTATED CEP110 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              3               61
  CLUS_3              3               69
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP110 MUTATED       12      2      1
  CEP110 WILD-TYPE    205     73     98
D684V8, multiclass
        clus
vv       CEP110 MUTATED CEP110 WILD-TYPE
  CLUS_1             12              205
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP110 MUTATED        7      2      4
  CEP110 WILD-TYPE    114    106     68
D684V9, multiclass
        clus
vv       CEP110 MUTATED CEP110 WILD-TYPE
  CLUS_1              7              114
  CLUS_2              2              106
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP110 MUTATED        5      2      2      0      4
  CEP110 WILD-TYPE     83     64     43     55     43
D684V10, multiclass
        clus
vv       CEP110 MUTATED CEP110 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              2               64
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(685) Variable = DPAGT1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPAGT1 MUTATED        2      3      1      0
  DPAGT1 WILD-TYPE    202    134     46      3
D685V1, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              3              134
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DPAGT1 MUTATED        0      2      1      1      1
  DPAGT1 WILD-TYPE     39     94     43     87     79
D685V2, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              2               94
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DPAGT1 MUTATED        0      1      2      1      1
  DPAGT1 WILD-TYPE     26     78     71     81     57
D685V3, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPAGT1 MUTATED        1      2      1      1
  DPAGT1 WILD-TYPE    126     49     70     68
D685V4, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DPAGT1 MUTATED        0      1      2      2      1
  DPAGT1 WILD-TYPE     84     84     83     67     46
D685V5, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              2               83
  CLUS_4              2               67
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DPAGT1 MUTATED        3      1      0      2
  DPAGT1 WILD-TYPE     92     73    121     78
D685V6, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DPAGT1 MUTATED        0      1      2      2      1      0
  DPAGT1 WILD-TYPE     52     63     70    102     39     59
D685V7, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              1               63
  CLUS_3              2               70
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DPAGT1 MUTATED        5      0      1
  DPAGT1 WILD-TYPE    212     75     98
D685V8, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DPAGT1 MUTATED        2      2      1
  DPAGT1 WILD-TYPE    119    106     71
D685V9, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              2              106
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DPAGT1 MUTATED        1      0      0      1      3
  DPAGT1 WILD-TYPE     87     66     45     54     44
D685V10, multiclass
        clus
vv       DPAGT1 MUTATED DPAGT1 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              0               45
  CLUS_4              1               54
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(686) Variable = KCNH4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH4 MUTATED        4      3      3      0
  KCNH4 WILD-TYPE    200    134     44      3
D686V1, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             4             200
  CLUS_2             3             134
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH4 MUTATED        0      7      2      1      1
  KCNH4 WILD-TYPE     39     89     42     87     79
D686V2, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              89
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH4 MUTATED        0      2      1      2      3
  KCNH4 WILD-TYPE     26     77     72     80     55
D686V3, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             1              72
  CLUS_4             2              80
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH4 MUTATED        0      5      1      2
  KCNH4 WILD-TYPE    127     46     70     67
D686V4, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             5              46
  CLUS_3             1              70
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH4 MUTATED        1      1      6      1      2
  KCNH4 WILD-TYPE     83     84     79     68     45
D686V5, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH4 MUTATED        2      1      2      6
  KCNH4 WILD-TYPE     93     73    119     74
D686V6, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNH4 MUTATED        3      3      3      1      0      1
  KCNH4 WILD-TYPE     49     61     69    103     40     58
D686V7, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             3              61
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH4 MUTATED        9      1      1
  KCNH4 WILD-TYPE    208     74     98
D686V8, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH4 MUTATED        5      1      5
  KCNH4 WILD-TYPE    116    107     67
D686V9, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             1             107
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH4 MUTATED        0      1      4      0      6
  KCNH4 WILD-TYPE     88     65     41     55     41
D686V10, multiclass
        clus
vv       KCNH4 MUTATED KCNH4 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(687) Variable = TCF20 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF20 MUTATED        2     14      0      0
  TCF20 WILD-TYPE    202    123     47      3
D687V1, multiclass
        clus
vv       TCF20 MUTATED TCF20 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            14             123
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCF20 MUTATED        2      6      1      1      3
  TCF20 WILD-TYPE     37     90     43     87     77
D687V2, multiclass
        clus
vv       TCF20 MUTATED TCF20 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCF20 MUTATED        2      5      2      3      3
  TCF20 WILD-TYPE     24     74     71     79     55
D687V3, multiclass
        clus
vv       TCF20 MUTATED TCF20 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             5              74
  CLUS_3             2              71
  CLUS_4             3              79
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF20 MUTATED        3      6      4      2
  TCF20 WILD-TYPE    124     45     67     67
D687V4, multiclass
        clus
vv       TCF20 MUTATED TCF20 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             6              45
  CLUS_3             4              67
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCF20 MUTATED        1      4      6      2      2
  TCF20 WILD-TYPE     83     81     79     67     45
D687V5, multiclass
        clus
vv       TCF20 MUTATED TCF20 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             4              81
  CLUS_3             6              79
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCF20 MUTATED        3      4      4      4
  TCF20 WILD-TYPE     92     70    117     76
D687V6, multiclass
        clus
vv       TCF20 MUTATED TCF20 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             4              70
  CLUS_3             4             117
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TCF20 MUTATED        3      7      2      2      2      1
  TCF20 WILD-TYPE     49     57     70    102     38     58
D687V7, multiclass
        clus
vv       TCF20 MUTATED TCF20 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             7              57
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF20 MUTATED       12      3      2
  TCF20 WILD-TYPE    205     72     97
D687V8, multiclass
        clus
vv       TCF20 MUTATED TCF20 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             3              72
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TCF20 MUTATED        4      3      5
  TCF20 WILD-TYPE    117    105     67
D687V9, multiclass
        clus
vv       TCF20 MUTATED TCF20 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             3             105
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCF20 MUTATED        4      1      4      0      3
  TCF20 WILD-TYPE     84     65     41     55     44
D687V10, multiclass
        clus
vv       TCF20 MUTATED TCF20 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(688) Variable = EPB41 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB41 MUTATED        1     10      2      0
  EPB41 WILD-TYPE    203    127     45      3
D688V1, multiclass
        clus
vv       EPB41 MUTATED EPB41 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            10             127
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41 MUTATED        1      7      1      0      1
  EPB41 WILD-TYPE     38     89     43     88     79
D688V2, multiclass
        clus
vv       EPB41 MUTATED EPB41 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             7              89
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41 MUTATED        0      2      4      3      2
  EPB41 WILD-TYPE     26     77     69     79     56
D688V3, multiclass
        clus
vv       EPB41 MUTATED EPB41 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             4              69
  CLUS_4             3              79
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB41 MUTATED        0      6      1      4
  EPB41 WILD-TYPE    127     45     70     65
D688V4, multiclass
        clus
vv       EPB41 MUTATED EPB41 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             6              45
  CLUS_3             1              70
  CLUS_4             4              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41 MUTATED        0      4      7      1      0
  EPB41 WILD-TYPE     84     81     78     68     47
D688V5, multiclass
        clus
vv       EPB41 MUTATED EPB41 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             4              81
  CLUS_3             7              78
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB41 MUTATED        2      4      0      6
  EPB41 WILD-TYPE     93     70    121     74
D688V6, multiclass
        clus
vv       EPB41 MUTATED EPB41 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             4              70
  CLUS_3             0             121
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPB41 MUTATED        4      5      1      1      2      0
  EPB41 WILD-TYPE     48     59     71    103     38     59
D688V7, multiclass
        clus
vv       EPB41 MUTATED EPB41 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             5              59
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPB41 MUTATED       11      2      0
  EPB41 WILD-TYPE    206     73     99
D688V8, multiclass
        clus
vv       EPB41 MUTATED EPB41 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             2              73
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPB41 MUTATED        4      2      3
  EPB41 WILD-TYPE    117    106     69
D688V9, multiclass
        clus
vv       EPB41 MUTATED EPB41 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             2             106
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41 MUTATED        4      1      1      0      3
  EPB41 WILD-TYPE     84     65     44     55     44
D688V10, multiclass
        clus
vv       EPB41 MUTATED EPB41 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(689) Variable = ARSJ MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARSJ MUTATED        1      5      0      0
  ARSJ WILD-TYPE    203    132     47      3
D689V1, multiclass
        clus
vv       ARSJ MUTATED ARSJ WILD-TYPE
  CLUS_1            1            203
  CLUS_2            5            132
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARSJ MUTATED        1      3      1      0      1
  ARSJ WILD-TYPE     38     93     43     88     79
D689V2, multiclass
        clus
vv       ARSJ MUTATED ARSJ WILD-TYPE
  CLUS_1            1             38
  CLUS_2            3             93
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARSJ MUTATED        1      3      1      0      0
  ARSJ WILD-TYPE     25     76     72     82     58
D689V3, multiclass
        clus
vv       ARSJ MUTATED ARSJ WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARSJ MUTATED        1      1      2      1
  ARSJ WILD-TYPE    126     50     69     68
D689V4, multiclass
        clus
vv       ARSJ MUTATED ARSJ WILD-TYPE
  CLUS_1            1            126
  CLUS_2            1             50
  CLUS_3            2             69
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARSJ MUTATED        0      2      2      1      0
  ARSJ WILD-TYPE     84     83     83     68     47
D689V5, multiclass
        clus
vv       ARSJ MUTATED ARSJ WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            2             83
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARSJ MUTATED        3      1      1      0
  ARSJ WILD-TYPE     92     73    120     80
D689V6, multiclass
        clus
vv       ARSJ MUTATED ARSJ WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            0             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARSJ MUTATED        1      1      1      1      2      0
  ARSJ WILD-TYPE     51     63     71    103     38     59
D689V7, multiclass
        clus
vv       ARSJ MUTATED ARSJ WILD-TYPE
  CLUS_1            1             51
  CLUS_2            1             63
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ARSJ MUTATED        2      2      2
  ARSJ WILD-TYPE    215     73     97
D689V8, multiclass
        clus
vv       ARSJ MUTATED ARSJ WILD-TYPE
  CLUS_1            2            215
  CLUS_2            2             73
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ARSJ MUTATED        2      1      2
  ARSJ WILD-TYPE    119    107     70
D689V9, multiclass
        clus
vv       ARSJ MUTATED ARSJ WILD-TYPE
  CLUS_1            2            119
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARSJ MUTATED        2      1      1      0      1
  ARSJ WILD-TYPE     86     65     44     55     46
D689V10, multiclass
        clus
vv       ARSJ MUTATED ARSJ WILD-TYPE
  CLUS_1            2             86
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(690) Variable = PNMT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNMT MUTATED        4      7      0      0
  PNMT WILD-TYPE    200    130     47      3
D690V1, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            4            200
  CLUS_2            7            130
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNMT MUTATED        0      4      1      2      2
  PNMT WILD-TYPE     39     92     43     86     78
D690V2, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            1             43
  CLUS_4            2             86
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNMT MUTATED        1      2      2      2      3
  PNMT WILD-TYPE     25     77     71     80     55
D690V3, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            1             25
  CLUS_2            2             77
  CLUS_3            2             71
  CLUS_4            2             80
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNMT MUTATED        4      4      1      1
  PNMT WILD-TYPE    123     47     70     68
D690V4, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            4            123
  CLUS_2            4             47
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNMT MUTATED        1      2      3      3      1
  PNMT WILD-TYPE     83     83     82     66     46
D690V5, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            1             83
  CLUS_2            2             83
  CLUS_3            3             82
  CLUS_4            3             66
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PNMT MUTATED        3      1      2      4
  PNMT WILD-TYPE     92     73    119     76
D690V6, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PNMT MUTATED        3      3      2      2      1      0
  PNMT WILD-TYPE     49     61     70    102     39     59
D690V7, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            3             49
  CLUS_2            3             61
  CLUS_3            2             70
  CLUS_4            2            102
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PNMT MUTATED        8      1      2
  PNMT WILD-TYPE    209     74     97
D690V8, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            8            209
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PNMT MUTATED        2      2      3
  PNMT WILD-TYPE    119    106     69
D690V9, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            2            119
  CLUS_2            2            106
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PNMT MUTATED        1      2      1      0      3
  PNMT WILD-TYPE     87     64     44     55     44
D690V10, multiclass
        clus
vv       PNMT MUTATED PNMT WILD-TYPE
  CLUS_1            1             87
  CLUS_2            2             64
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(691) Variable = AP3M2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3M2 MUTATED        1      8      3      0
  AP3M2 WILD-TYPE    203    129     44      3
D691V1, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             8             129
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP3M2 MUTATED        1      6      2      0      0
  AP3M2 WILD-TYPE     38     90     42     88     80
D691V2, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP3M2 MUTATED        0      3      3      2      2
  AP3M2 WILD-TYPE     26     76     70     80     56
D691V3, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3M2 MUTATED        2      6      2      0
  AP3M2 WILD-TYPE    125     45     69     69
D691V4, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             6              45
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP3M2 MUTATED        0      2      5      3      2
  AP3M2 WILD-TYPE     84     83     80     66     45
D691V5, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             3              66
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3M2 MUTATED        7      1      2      2
  AP3M2 WILD-TYPE     88     73    119     78
D691V6, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AP3M2 MUTATED        3      3      2      1      3      0
  AP3M2 WILD-TYPE     49     61     70    103     37     59
D691V7, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             3              61
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             3              37
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3M2 MUTATED        8      2      2
  AP3M2 WILD-TYPE    209     73     97
D691V8, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3M2 MUTATED        2      2      2
  AP3M2 WILD-TYPE    119    106     70
D691V9, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP3M2 MUTATED        1      1      2      0      2
  AP3M2 WILD-TYPE     87     65     43     55     45
D691V10, multiclass
        clus
vv       AP3M2 MUTATED AP3M2 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(692) Variable = EHBP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1 MUTATED        6      8      0      0
  EHBP1 WILD-TYPE    198    129     47      3
D692V1, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             6             198
  CLUS_2             8             129
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHBP1 MUTATED        1      6      2      1      2
  EHBP1 WILD-TYPE     38     90     42     87     78
D692V2, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHBP1 MUTATED        1      4      3      3      1
  EHBP1 WILD-TYPE     25     75     70     79     57
D692V3, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             3              70
  CLUS_4             3              79
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1 MUTATED        2      3      5      2
  EHBP1 WILD-TYPE    125     48     66     67
D692V4, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             3              48
  CLUS_3             5              66
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHBP1 MUTATED        1      1      9      2      1
  EHBP1 WILD-TYPE     83     84     76     67     46
D692V5, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             9              76
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EHBP1 MUTATED        3      2      3      6
  EHBP1 WILD-TYPE     92     72    118     74
D692V6, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             3             118
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EHBP1 MUTATED        2      6      3      2      1      0
  EHBP1 WILD-TYPE     50     58     69    102     39     59
D692V7, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             6              58
  CLUS_3             3              69
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EHBP1 MUTATED       10      3      1
  EHBP1 WILD-TYPE    207     72     98
D692V8, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             3              72
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EHBP1 MUTATED        5      4      3
  EHBP1 WILD-TYPE    116    104     69
D692V9, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             4             104
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EHBP1 MUTATED        6      1      3      1      1
  EHBP1 WILD-TYPE     82     65     42     54     46
D692V10, multiclass
        clus
vv       EHBP1 MUTATED EHBP1 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(693) Variable = CRAT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRAT MUTATED        1      8      3      0
  CRAT WILD-TYPE    203    129     44      3
D693V1, multiclass
        clus
vv       CRAT MUTATED CRAT WILD-TYPE
  CLUS_1            1            203
  CLUS_2            8            129
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRAT MUTATED        3      3      2      0      1
  CRAT WILD-TYPE     36     93     42     88     79
D693V2, multiclass
        clus
vv       CRAT MUTATED CRAT WILD-TYPE
  CLUS_1            3             36
  CLUS_2            3             93
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRAT MUTATED        1      2      4      0      3
  CRAT WILD-TYPE     25     77     69     82     55
D693V3, multiclass
        clus
vv       CRAT MUTATED CRAT WILD-TYPE
  CLUS_1            1             25
  CLUS_2            2             77
  CLUS_3            4             69
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRAT MUTATED        4      4      1      1
  CRAT WILD-TYPE    123     47     70     68
D693V4, multiclass
        clus
vv       CRAT MUTATED CRAT WILD-TYPE
  CLUS_1            4            123
  CLUS_2            4             47
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRAT MUTATED        1      1      5      3      2
  CRAT WILD-TYPE     83     84     80     66     45
D693V5, multiclass
        clus
vv       CRAT MUTATED CRAT WILD-TYPE
  CLUS_1            1             83
  CLUS_2            1             84
  CLUS_3            5             80
  CLUS_4            3             66
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRAT MUTATED        3      3      2      4
  CRAT WILD-TYPE     92     71    119     76
D693V6, multiclass
        clus
vv       CRAT MUTATED CRAT WILD-TYPE
  CLUS_1            3             92
  CLUS_2            3             71
  CLUS_3            2            119
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CRAT MUTATED        3      5      1      1      1      1
  CRAT WILD-TYPE     49     59     71    103     39     58
D693V7, multiclass
        clus
vv       CRAT MUTATED CRAT WILD-TYPE
  CLUS_1            3             49
  CLUS_2            5             59
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CRAT MUTATED       11      0      1
  CRAT WILD-TYPE    206     75     98
D693V8, multiclass
        clus
vv       CRAT MUTATED CRAT WILD-TYPE
  CLUS_1           11            206
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CRAT MUTATED        3      0      4
  CRAT WILD-TYPE    118    108     68
D693V9, multiclass
        clus
vv       CRAT MUTATED CRAT WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRAT MUTATED        2      0      2      0      3
  CRAT WILD-TYPE     86     66     43     55     44
D693V10, multiclass
        clus
vv       CRAT MUTATED CRAT WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(694) Variable = SMAP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAP2 MUTATED        1      4      0      0
  SMAP2 WILD-TYPE    203    133     47      3
D694V1, multiclass
        clus
vv       SMAP2 MUTATED SMAP2 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             4             133
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAP2 MUTATED        0      3      1      0      0
  SMAP2 WILD-TYPE     39     93     43     88     80
D694V2, multiclass
        clus
vv       SMAP2 MUTATED SMAP2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAP2 MUTATED        0      2      3      0      0
  SMAP2 WILD-TYPE     26     77     70     82     58
D694V3, multiclass
        clus
vv       SMAP2 MUTATED SMAP2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAP2 MUTATED        2      2      1      0
  SMAP2 WILD-TYPE    125     49     70     69
D694V4, multiclass
        clus
vv       SMAP2 MUTATED SMAP2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             2              49
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAP2 MUTATED        0      1      3      0      1
  SMAP2 WILD-TYPE     84     84     82     69     46
D694V5, multiclass
        clus
vv       SMAP2 MUTATED SMAP2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             3              82
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAP2 MUTATED        3      1      0      1
  SMAP2 WILD-TYPE     92     73    121     79
D694V6, multiclass
        clus
vv       SMAP2 MUTATED SMAP2 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMAP2 MUTATED        0      3      1      1      0      0
  SMAP2 WILD-TYPE     52     61     71    103     40     59
D694V7, multiclass
        clus
vv       SMAP2 MUTATED SMAP2 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAP2 MUTATED        4      1      0
  SMAP2 WILD-TYPE    213     74     99
D694V8, multiclass
        clus
vv       SMAP2 MUTATED SMAP2 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAP2 MUTATED        1      1      2
  SMAP2 WILD-TYPE    120    107     70
D694V9, multiclass
        clus
vv       SMAP2 MUTATED SMAP2 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAP2 MUTATED        1      1      2      0      0
  SMAP2 WILD-TYPE     87     65     43     55     47
D694V10, multiclass
        clus
vv       SMAP2 MUTATED SMAP2 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(695) Variable = APITD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APITD1 MUTATED        2      3      0      0
  APITD1 WILD-TYPE    202    134     47      3
D695V1, multiclass
        clus
vv       APITD1 MUTATED APITD1 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              3              134
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APITD1 MUTATED        0      4      0      0      0
  APITD1 WILD-TYPE     39     92     44     88     80
D695V2, multiclass
        clus
vv       APITD1 MUTATED APITD1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APITD1 MUTATED        0      3      2      0      0
  APITD1 WILD-TYPE     26     76     71     82     58
D695V3, multiclass
        clus
vv       APITD1 MUTATED APITD1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APITD1 MUTATED        2      1      1      1
  APITD1 WILD-TYPE    125     50     70     68
D695V4, multiclass
        clus
vv       APITD1 MUTATED APITD1 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              1               50
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APITD1 MUTATED        0      2      3      0      0
  APITD1 WILD-TYPE     84     83     82     69     47
D695V5, multiclass
        clus
vv       APITD1 MUTATED APITD1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  APITD1 MUTATED        1      2      0      2
  APITD1 WILD-TYPE     94     72    121     78
D695V6, multiclass
        clus
vv       APITD1 MUTATED APITD1 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  APITD1 MUTATED        1      1      1      1      1      0
  APITD1 WILD-TYPE     51     63     71    103     39     59
D695V7, multiclass
        clus
vv       APITD1 MUTATED APITD1 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              1               63
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  APITD1 MUTATED        3      1      1
  APITD1 WILD-TYPE    214     74     98
D695V8, multiclass
        clus
vv       APITD1 MUTATED APITD1 WILD-TYPE
  CLUS_1              3              214
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  APITD1 MUTATED        2      2      0
  APITD1 WILD-TYPE    119    106     72
D695V9, multiclass
        clus
vv       APITD1 MUTATED APITD1 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              2              106
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  APITD1 MUTATED        2      1      0      0      1
  APITD1 WILD-TYPE     86     65     45     55     46
D695V10, multiclass
        clus
vv       APITD1 MUTATED APITD1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              0               45
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(696) Variable = KIFAP3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIFAP3 MUTATED        2     10      2      0
  KIFAP3 WILD-TYPE    202    127     45      3
D696V1, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              2              202
  CLUS_2             10              127
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIFAP3 MUTATED        0      8      0      3      0
  KIFAP3 WILD-TYPE     39     88     44     85     80
D696V2, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              8               88
  CLUS_3              0               44
  CLUS_4              3               85
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIFAP3 MUTATED        1      2      3      2      3
  KIFAP3 WILD-TYPE     25     77     70     80     55
D696V3, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               77
  CLUS_3              3               70
  CLUS_4              2               80
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIFAP3 MUTATED        2      5      1      3
  KIFAP3 WILD-TYPE    125     46     70     66
D696V4, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              5               46
  CLUS_3              1               70
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIFAP3 MUTATED        4      2      5      2      0
  KIFAP3 WILD-TYPE     80     83     80     67     47
D696V5, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              4               80
  CLUS_2              2               83
  CLUS_3              5               80
  CLUS_4              2               67
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIFAP3 MUTATED        4      3      3      3
  KIFAP3 WILD-TYPE     91     71    118     77
D696V6, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              3               71
  CLUS_3              3              118
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIFAP3 MUTATED        3      2      3      3      0      3
  KIFAP3 WILD-TYPE     49     62     69    101     40     56
D696V7, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              2               62
  CLUS_3              3               69
  CLUS_4              3              101
  CLUS_5              0               40
  CLUS_6              3               56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIFAP3 MUTATED        9      2      3
  KIFAP3 WILD-TYPE    208     73     96
D696V8, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              2               73
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIFAP3 MUTATED        4      3      3
  KIFAP3 WILD-TYPE    117    105     69
D696V9, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              3              105
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIFAP3 MUTATED        0      2      1      2      5
  KIFAP3 WILD-TYPE     88     64     44     53     42
D696V10, multiclass
        clus
vv       KIFAP3 MUTATED KIFAP3 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              2               64
  CLUS_3              1               44
  CLUS_4              2               53
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(697) Variable = ELL2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELL2 MUTATED        3     12      0      0
  ELL2 WILD-TYPE    201    125     47      3
D697V1, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            3            201
  CLUS_2           12            125
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELL2 MUTATED        0      7      1      1      3
  ELL2 WILD-TYPE     39     89     43     87     77
D697V2, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            7             89
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELL2 MUTATED        1      4      3      2      5
  ELL2 WILD-TYPE     25     75     70     80     53
D697V3, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             75
  CLUS_3            3             70
  CLUS_4            2             80
  CLUS_5            5             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELL2 MUTATED        5      5      3      2
  ELL2 WILD-TYPE    122     46     68     67
D697V4, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            5            122
  CLUS_2            5             46
  CLUS_3            3             68
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELL2 MUTATED        0      3      6      5      1
  ELL2 WILD-TYPE     84     82     79     64     46
D697V5, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            6             79
  CLUS_4            5             64
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELL2 MUTATED        5      3      3      4
  ELL2 WILD-TYPE     90     71    118     76
D697V6, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            5             90
  CLUS_2            3             71
  CLUS_3            3            118
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ELL2 MUTATED        3      5      4      2      1      0
  ELL2 WILD-TYPE     49     59     68    102     39     59
D697V7, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            5             59
  CLUS_3            4             68
  CLUS_4            2            102
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELL2 MUTATED       10      4      1
  ELL2 WILD-TYPE    207     71     98
D697V8, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1           10            207
  CLUS_2            4             71
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ELL2 MUTATED        5      2      5
  ELL2 WILD-TYPE    116    106     67
D697V9, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            2            106
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELL2 MUTATED        2      2      4      0      4
  ELL2 WILD-TYPE     86     64     41     55     43
D697V10, multiclass
        clus
vv       ELL2 MUTATED ELL2 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            2             64
  CLUS_3            4             41
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(698) Variable = CEP290 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP290 MUTATED        5      8      1      0
  CEP290 WILD-TYPE    199    129     46      3
D698V1, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              5              199
  CLUS_2              8              129
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP290 MUTATED        1      9      0      3      0
  CEP290 WILD-TYPE     38     87     44     85     80
D698V2, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              9               87
  CLUS_3              0               44
  CLUS_4              3               85
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP290 MUTATED        0      5      5      1      2
  CEP290 WILD-TYPE     26     74     68     81     56
D698V3, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              5               74
  CLUS_3              5               68
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP290 MUTATED        3      7      1      2
  CEP290 WILD-TYPE    124     44     70     67
D698V4, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              7               44
  CLUS_3              1               70
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP290 MUTATED        2      1      6      1      3
  CEP290 WILD-TYPE     82     84     79     68     44
D698V5, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              1               84
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP290 MUTATED        3      2      2      6
  CEP290 WILD-TYPE     92     72    119     74
D698V6, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              2               72
  CLUS_3              2              119
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEP290 MUTATED        5      2      3      0      1      3
  CEP290 WILD-TYPE     47     62     69    104     39     56
D698V7, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              2               62
  CLUS_3              3               69
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              3               56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP290 MUTATED       10      0      4
  CEP290 WILD-TYPE    207     75     95
D698V8, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1             10              207
  CLUS_2              0               75
  CLUS_3              4               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP290 MUTATED        7      2      4
  CEP290 WILD-TYPE    114    106     68
D698V9, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              7              114
  CLUS_2              2              106
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP290 MUTATED        3      0      1      3      6
  CEP290 WILD-TYPE     85     66     44     52     41
D698V10, multiclass
        clus
vv       CEP290 MUTATED CEP290 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              3               52
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(699) Variable = MBD2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD2 MUTATED        1      8      0      0
  MBD2 WILD-TYPE    203    129     47      3
D699V1, multiclass
        clus
vv       MBD2 MUTATED MBD2 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            8            129
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD2 MUTATED        0      5      1      0      0
  MBD2 WILD-TYPE     39     91     43     88     80
D699V2, multiclass
        clus
vv       MBD2 MUTATED MBD2 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            5             91
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD2 MUTATED        1      3      2      1      1
  MBD2 WILD-TYPE     25     76     71     81     57
D699V3, multiclass
        clus
vv       MBD2 MUTATED MBD2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD2 MUTATED        1      5      0      2
  MBD2 WILD-TYPE    126     46     71     67
D699V4, multiclass
        clus
vv       MBD2 MUTATED MBD2 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            5             46
  CLUS_3            0             71
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD2 MUTATED        1      2      3      1      1
  MBD2 WILD-TYPE     83     83     82     68     46
D699V5, multiclass
        clus
vv       MBD2 MUTATED MBD2 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            2             83
  CLUS_3            3             82
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBD2 MUTATED        3      2      0      3
  MBD2 WILD-TYPE     92     72    121     77
D699V6, multiclass
        clus
vv       MBD2 MUTATED MBD2 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MBD2 MUTATED        2      4      1      1      0      1
  MBD2 WILD-TYPE     50     60     71    103     40     58
D699V7, multiclass
        clus
vv       MBD2 MUTATED MBD2 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            4             60
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD2 MUTATED        8      0      1
  MBD2 WILD-TYPE    209     75     98
D699V8, multiclass
        clus
vv       MBD2 MUTATED MBD2 WILD-TYPE
  CLUS_1            8            209
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MBD2 MUTATED        4      0      2
  MBD2 WILD-TYPE    117    108     70
D699V9, multiclass
        clus
vv       MBD2 MUTATED MBD2 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBD2 MUTATED        2      0      1      0      3
  MBD2 WILD-TYPE     86     66     44     55     44
D699V10, multiclass
        clus
vv       MBD2 MUTATED MBD2 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(700) Variable = DDX43 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX43 MUTATED        3      8      2      0
  DDX43 WILD-TYPE    201    129     45      3
D700V1, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             8             129
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX43 MUTATED        1      4      1      3      0
  DDX43 WILD-TYPE     38     92     43     85     80
D700V2, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             3              85
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX43 MUTATED        0      2      2      1      5
  DDX43 WILD-TYPE     26     77     71     81     53
D700V3, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX43 MUTATED        2      5      1      2
  DDX43 WILD-TYPE    125     46     70     67
D700V4, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             5              46
  CLUS_3             1              70
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX43 MUTATED        2      1      2      3      4
  DDX43 WILD-TYPE     82     84     83     66     43
D700V5, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             1              84
  CLUS_3             2              83
  CLUS_4             3              66
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDX43 MUTATED        4      1      3      4
  DDX43 WILD-TYPE     91     73    118     76
D700V6, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             3             118
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDX43 MUTATED        3      4      4      1      0      1
  DDX43 WILD-TYPE     49     60     68    103     40     58
D700V7, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             4              60
  CLUS_3             4              68
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX43 MUTATED       10      1      2
  DDX43 WILD-TYPE    207     74     97
D700V8, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDX43 MUTATED        4      1      2
  DDX43 WILD-TYPE    117    107     70
D700V9, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDX43 MUTATED        3      0      1      1      2
  DDX43 WILD-TYPE     85     66     44     54     45
D700V10, multiclass
        clus
vv       DDX43 MUTATED DDX43 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(701) Variable = DDHD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDHD1 MUTATED        1     11      1      0
  DDHD1 WILD-TYPE    203    126     46      3
D701V1, multiclass
        clus
vv       DDHD1 MUTATED DDHD1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDHD1 MUTATED        1      4      3      0      0
  DDHD1 WILD-TYPE     38     92     41     88     80
D701V2, multiclass
        clus
vv       DDHD1 MUTATED DDHD1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              92
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDHD1 MUTATED        0      7      2      2      1
  DDHD1 WILD-TYPE     26     72     71     80     57
D701V3, multiclass
        clus
vv       DDHD1 MUTATED DDHD1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             7              72
  CLUS_3             2              71
  CLUS_4             2              80
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDHD1 MUTATED        0      4      6      2
  DDHD1 WILD-TYPE    127     47     65     67
D701V4, multiclass
        clus
vv       DDHD1 MUTATED DDHD1 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             4              47
  CLUS_3             6              65
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDHD1 MUTATED        0      4      4      1      3
  DDHD1 WILD-TYPE     84     81     81     68     44
D701V5, multiclass
        clus
vv       DDHD1 MUTATED DDHD1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             4              81
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DDHD1 MUTATED        3      3      1      5
  DDHD1 WILD-TYPE     92     71    120     75
D701V6, multiclass
        clus
vv       DDHD1 MUTATED DDHD1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             3              71
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DDHD1 MUTATED        1      7      2      1      1      1
  DDHD1 WILD-TYPE     51     57     70    103     39     58
D701V7, multiclass
        clus
vv       DDHD1 MUTATED DDHD1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             7              57
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDHD1 MUTATED       11      1      1
  DDHD1 WILD-TYPE    206     74     98
D701V8, multiclass
        clus
vv       DDHD1 MUTATED DDHD1 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DDHD1 MUTATED        1      1      5
  DDHD1 WILD-TYPE    120    107     67
D701V9, multiclass
        clus
vv       DDHD1 MUTATED DDHD1 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             1             107
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DDHD1 MUTATED        3      0      2      0      2
  DDHD1 WILD-TYPE     85     66     43     55     45
D701V10, multiclass
        clus
vv       DDHD1 MUTATED DDHD1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(702) Variable = TMEM64 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM64 MUTATED        3      4      0      0
  TMEM64 WILD-TYPE    201    133     47      3
D702V1, multiclass
        clus
vv       TMEM64 MUTATED TMEM64 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              4              133
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM64 MUTATED        0      4      0      1      1
  TMEM64 WILD-TYPE     39     92     44     87     79
D702V2, multiclass
        clus
vv       TMEM64 MUTATED TMEM64 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM64 MUTATED        0      3      1      0      0
  TMEM64 WILD-TYPE     26     76     72     82     58
D702V3, multiclass
        clus
vv       TMEM64 MUTATED TMEM64 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM64 MUTATED        1      2      1      0
  TMEM64 WILD-TYPE    126     49     70     69
D702V4, multiclass
        clus
vv       TMEM64 MUTATED TMEM64 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM64 MUTATED        2      1      3      0      0
  TMEM64 WILD-TYPE     82     84     82     69     47
D702V5, multiclass
        clus
vv       TMEM64 MUTATED TMEM64 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              1               84
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM64 MUTATED        4      0      1      1
  TMEM64 WILD-TYPE     91     74    120     79
D702V6, multiclass
        clus
vv       TMEM64 MUTATED TMEM64 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM64 MUTATED        1      2      1      0      2      1
  TMEM64 WILD-TYPE     51     62     71    104     38     58
D702V7, multiclass
        clus
vv       TMEM64 MUTATED TMEM64 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              2               38
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM64 MUTATED        4      0      3
  TMEM64 WILD-TYPE    213     75     96
D702V8, multiclass
        clus
vv       TMEM64 MUTATED TMEM64 WILD-TYPE
  CLUS_1              4              213
  CLUS_2              0               75
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEM64 MUTATED        2      2      2
  TMEM64 WILD-TYPE    119    106     70
D702V9, multiclass
        clus
vv       TMEM64 MUTATED TMEM64 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              2              106
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM64 MUTATED        3      0      1      1      1
  TMEM64 WILD-TYPE     85     66     44     54     46
D702V10, multiclass
        clus
vv       TMEM64 MUTATED TMEM64 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(703) Variable = ECSIT MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECSIT MUTATED        1      4      1      0
  ECSIT WILD-TYPE    203    133     46      3
D703V1, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             1             203
  CLUS_2             4             133
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ECSIT MUTATED        0      3      0      1      1
  ECSIT WILD-TYPE     39     93     44     87     79
D703V2, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ECSIT MUTATED        0      1      1      1      0
  ECSIT WILD-TYPE     26     78     72     81     58
D703V3, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECSIT MUTATED        0      2      0      1
  ECSIT WILD-TYPE    127     49     71     68
D703V4, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             0             127
  CLUS_2             2              49
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ECSIT MUTATED        1      0      3      1      1
  ECSIT WILD-TYPE     83     85     82     68     46
D703V5, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ECSIT MUTATED        1      1      1      3
  ECSIT WILD-TYPE     94     73    120     77
D703V6, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ECSIT MUTATED        4      0      0      2      0      0
  ECSIT WILD-TYPE     48     64     72    102     40     59
D703V7, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             4              48
  CLUS_2             0              64
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ECSIT MUTATED        3      0      3
  ECSIT WILD-TYPE    214     75     96
D703V8, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             3             214
  CLUS_2             0              75
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ECSIT MUTATED        2      2      0
  ECSIT WILD-TYPE    119    106     72
D703V9, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             2             119
  CLUS_2             2             106
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ECSIT MUTATED        1      0      0      1      2
  ECSIT WILD-TYPE     87     66     45     54     45
D703V10, multiclass
        clus
vv       ECSIT MUTATED ECSIT WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(704) Variable = KIAA1543 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1543 MUTATED        3     12      1      0
  KIAA1543 WILD-TYPE    201    125     46      3
D704V1, multiclass
        clus
vv       KIAA1543 MUTATED KIAA1543 WILD-TYPE
  CLUS_1                3                201
  CLUS_2               12                125
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1543 MUTATED        2      8      2      0      1
  KIAA1543 WILD-TYPE     37     88     42     88     79
D704V2, multiclass
        clus
vv       KIAA1543 MUTATED KIAA1543 WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                8                 88
  CLUS_3                2                 42
  CLUS_4                0                 88
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1543 MUTATED        1      5      6      1      3
  KIAA1543 WILD-TYPE     25     74     67     81     55
D704V3, multiclass
        clus
vv       KIAA1543 MUTATED KIAA1543 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                5                 74
  CLUS_3                6                 67
  CLUS_4                1                 81
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1543 MUTATED        6      5      4      1
  KIAA1543 WILD-TYPE    121     46     67     68
D704V4, multiclass
        clus
vv       KIAA1543 MUTATED KIAA1543 WILD-TYPE
  CLUS_1                6                121
  CLUS_2                5                 46
  CLUS_3                4                 67
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1543 MUTATED        0      4      8      3      2
  KIAA1543 WILD-TYPE     84     81     77     66     45
D704V5, multiclass
        clus
vv       KIAA1543 MUTATED KIAA1543 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                4                 81
  CLUS_3                8                 77
  CLUS_4                3                 66
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1543 MUTATED        6      2      2      7
  KIAA1543 WILD-TYPE     89     72    119     73
D704V6, multiclass
        clus
vv       KIAA1543 MUTATED KIAA1543 WILD-TYPE
  CLUS_1                6                 89
  CLUS_2                2                 72
  CLUS_3                2                119
  CLUS_4                7                 73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1543 MUTATED        4      7      2      1      3      0
  KIAA1543 WILD-TYPE     48     57     70    103     37     59
D704V7, multiclass
        clus
vv       KIAA1543 MUTATED KIAA1543 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                7                 57
  CLUS_3                2                 70
  CLUS_4                1                103
  CLUS_5                3                 37
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1543 MUTATED       13      0      4
  KIAA1543 WILD-TYPE    204     75     95
D704V8, multiclass
        clus
vv       KIAA1543 MUTATED KIAA1543 WILD-TYPE
  CLUS_1               13                204
  CLUS_2                0                 75
  CLUS_3                4                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1543 MUTATED        4      2      4
  KIAA1543 WILD-TYPE    117    106     68
D704V9, multiclass
        clus
vv       KIAA1543 MUTATED KIAA1543 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                2                106
  CLUS_3                4                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1543 MUTATED        4      0      3      0      3
  KIAA1543 WILD-TYPE     84     66     42     55     44
D704V10, multiclass
        clus
vv       KIAA1543 MUTATED KIAA1543 WILD-TYPE
  CLUS_1                4                 84
  CLUS_2                0                 66
  CLUS_3                3                 42
  CLUS_4                0                 55
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(705) Variable = UPK2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPK2 MUTATED        0      3      1      0
  UPK2 WILD-TYPE    204    134     46      3
D705V1, multiclass
        clus
vv       UPK2 MUTATED UPK2 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            3            134
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UPK2 MUTATED        0      2      1      0      0
  UPK2 WILD-TYPE     39     94     43     88     80
D705V2, multiclass
        clus
vv       UPK2 MUTATED UPK2 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            2             94
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UPK2 MUTATED        0      2      1      0      1
  UPK2 WILD-TYPE     26     77     72     82     57
D705V3, multiclass
        clus
vv       UPK2 MUTATED UPK2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPK2 MUTATED        1      2      1      0
  UPK2 WILD-TYPE    126     49     70     69
D705V4, multiclass
        clus
vv       UPK2 MUTATED UPK2 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            2             49
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UPK2 MUTATED        0      1      1      0      1
  UPK2 WILD-TYPE     84     84     84     69     46
D705V5, multiclass
        clus
vv       UPK2 MUTATED UPK2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            1             84
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UPK2 MUTATED        0      0      0      3
  UPK2 WILD-TYPE     95     74    121     77
D705V6, multiclass
        clus
vv       UPK2 MUTATED UPK2 WILD-TYPE
  CLUS_1            0             95
  CLUS_2            0             74
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UPK2 MUTATED        0      1      3      0      0      0
  UPK2 WILD-TYPE     52     63     69    104     40     59
D705V7, multiclass
        clus
vv       UPK2 MUTATED UPK2 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            1             63
  CLUS_3            3             69
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UPK2 MUTATED        4      0      0
  UPK2 WILD-TYPE    213     75     99
D705V8, multiclass
        clus
vv       UPK2 MUTATED UPK2 WILD-TYPE
  CLUS_1            4            213
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UPK2 MUTATED        0      0      2
  UPK2 WILD-TYPE    121    108     70
D705V9, multiclass
[1] "Remove cluster labels:" "UPK2 MUTATED"          
clus
  UPK2 MUTATED UPK2 WILD-TYPE 
             2            299 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7703     TCGA-BR-7704     TCGA-BR-7707     TCGA-BR-7715 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8060     TCGA-BR-8077     TCGA-BR-8078 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8361 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8368 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485     TCGA-BR-8486 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590     TCGA-BR-8591 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A452 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR     TCGA-BR-A4CS 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4J1     TCGA-BR-A4J5     TCGA-BR-A4J6     TCGA-BR-A4J7 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI     TCGA-BR-A4QL 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8533     TCGA-CD-8534     TCGA-CD-8535 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-A48C     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5716     TCGA-CG-5717 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8574 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-8575     TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-A4YT     TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YY 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-D7-A6ET     TCGA-D7-A6EV     TCGA-D7-A6EX 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-A6EY     TCGA-D7-A6EZ     TCGA-D7-A6F0     TCGA-D7-A6F2 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-A747     TCGA-D7-A748     TCGA-D7-A74A     TCGA-D7-A74B 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE     TCGA-FP-A9TM 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7134     TCGA-HF-7136 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-8238     TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GJ 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GX 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H4     TCGA-HU-A4H5 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4H6     TCGA-HU-A4H8     TCGA-HU-A4HB     TCGA-IN-7806 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663     TCGA-IN-A6RI 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-IN-A6RJ     TCGA-IN-A6RL     TCGA-IN-A6RN     TCGA-IN-A6RP 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-IN-A7NR     TCGA-IN-A7NT     TCGA-IN-A7NU     TCGA-IN-AB1V 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-IN-AB1X     TCGA-IP-7968     TCGA-KB-A6F5     TCGA-KB-A6F7 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-KB-A93J     TCGA-MX-A5UG     TCGA-MX-A5UJ     TCGA-MX-A663 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-MX-A666     TCGA-R5-A7O7     TCGA-R5-A7ZE     TCGA-R5-A7ZF 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-R5-A7ZI     TCGA-R5-A7ZR     TCGA-R5-A804     TCGA-R5-A805 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-RD-A7BS     TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-RD-A8N5 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-RD-A8N6     TCGA-RD-A8N9     TCGA-SW-A7EA     TCGA-SW-A7EB 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-VQ-A8DL     TCGA-VQ-A8DU     TCGA-VQ-A8DV     TCGA-VQ-A8E2 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3     TCGA-VQ-A8PE 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ     TCGA-VQ-A91Q 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-A94T 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-VQ-AA64     TCGA-VQ-AA68     TCGA-VQ-AA69     TCGA-VQ-AA6A 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-VQ-AA6B     TCGA-VQ-AA6F     TCGA-VQ-AA6G     TCGA-VQ-AA6I 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-VQ-AA6J     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UPK2 MUTATED        0      0      0      0      2
  UPK2 WILD-TYPE     88     66     45     55     45
D705V10, multiclass
[1] "Remove cluster labels:" "UPK2 MUTATED"          
clus
  UPK2 MUTATED UPK2 WILD-TYPE 
             2            299 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7703     TCGA-BR-7704     TCGA-BR-7707     TCGA-BR-7715 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8060     TCGA-BR-8077     TCGA-BR-8078 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8361 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8368 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485     TCGA-BR-8486 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590     TCGA-BR-8591 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A452 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR     TCGA-BR-A4CS 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4J1     TCGA-BR-A4J5     TCGA-BR-A4J6     TCGA-BR-A4J7 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI     TCGA-BR-A4QL 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8533     TCGA-CD-8534     TCGA-CD-8535 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CD-A48C     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5716     TCGA-CG-5717 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8574 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-8575     TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-A4YT     TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YY 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-D7-A6ET     TCGA-D7-A6EV     TCGA-D7-A6EX 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-A6EY     TCGA-D7-A6EZ     TCGA-D7-A6F0     TCGA-D7-A6F2 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-D7-A747     TCGA-D7-A748     TCGA-D7-A74A     TCGA-D7-A74B 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE     TCGA-FP-A9TM 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7134     TCGA-HF-7136 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-8238     TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GJ 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GX 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H4     TCGA-HU-A4H5 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-HU-A4H6     TCGA-HU-A4H8     TCGA-HU-A4HB     TCGA-IN-7806 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663     TCGA-IN-A6RI 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-IN-A6RJ     TCGA-IN-A6RL     TCGA-IN-A6RN     TCGA-IN-A6RP 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-IN-A7NR     TCGA-IN-A7NT     TCGA-IN-A7NU     TCGA-IN-AB1V 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-IN-AB1X     TCGA-IP-7968     TCGA-KB-A6F5     TCGA-KB-A6F7 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-KB-A93J     TCGA-MX-A5UG     TCGA-MX-A5UJ     TCGA-MX-A663 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-MX-A666     TCGA-R5-A7O7     TCGA-R5-A7ZE     TCGA-R5-A7ZF 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-R5-A7ZI     TCGA-R5-A7ZR     TCGA-R5-A804     TCGA-R5-A805 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-RD-A7BS     TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-RD-A8N5 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-RD-A8N6     TCGA-RD-A8N9     TCGA-SW-A7EA     TCGA-SW-A7EB 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-VQ-A8DL     TCGA-VQ-A8DU     TCGA-VQ-A8DV     TCGA-VQ-A8E2 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3     TCGA-VQ-A8PE 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ     TCGA-VQ-A91Q 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-A94T 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-VQ-AA64     TCGA-VQ-AA68     TCGA-VQ-AA69     TCGA-VQ-AA6A 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-VQ-AA6B     TCGA-VQ-AA6F     TCGA-VQ-AA6G     TCGA-VQ-AA6I 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 
    TCGA-VQ-AA6J     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"UPK2 WILD-TYPE" "UPK2 WILD-TYPE" "UPK2 WILD-TYPE" 

Clustering(706) Variable = IGFBP7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP7 MUTATED        0      3      0      0
  IGFBP7 WILD-TYPE    204    134     47      3
D706V1, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              3              134
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGFBP7 MUTATED        0      3      0      0      0
  IGFBP7 WILD-TYPE     39     93     44     88     80
D706V2, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGFBP7 MUTATED        0      2      0      0      0
  IGFBP7 WILD-TYPE     26     77     73     82     58
D706V3, multiclass
[1] "Remove cluster labels:" "IGFBP7 MUTATED"        
clus
  IGFBP7 MUTATED IGFBP7 WILD-TYPE 
               2              316 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-4183       TCGA-BR-4184 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4187       TCGA-BR-4188       TCGA-BR-4191       TCGA-BR-4201 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4292 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6709 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-7704       TCGA-BR-7715       TCGA-BR-7716       TCGA-BR-7717 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-7722       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8060       TCGA-BR-8080       TCGA-BR-8081 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8285       TCGA-BR-8286       TCGA-BR-8289 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8380 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8589       TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8686 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A44U 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4J5       TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4PD       TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8528       TCGA-CD-8529 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8533 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48A       TCGA-CD-A48C 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4460       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4474       TCGA-CG-4475       TCGA-CG-4476       TCGA-CG-4477 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5723       TCGA-CG-5724 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5734       TCGA-D7-5577 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-8575       TCGA-D7-8578       TCGA-D7-A4YT       TCGA-D7-A4YU 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-A6EV       TCGA-D7-A6EX       TCGA-D7-A6EY       TCGA-D7-A6EZ 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-A6F0       TCGA-D7-A748       TCGA-EQ-8122       TCGA-EQ-A4SO 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-F1-A72C       TCGA-FP-7916       TCGA-FP-7998       TCGA-HF-7131 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7134       TCGA-HF-7136 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HF-A5NB       TCGA-HJ-7597       TCGA-HU-8602       TCGA-HU-8608 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HU-8610       TCGA-HU-A4GF       TCGA-HU-A4GQ       TCGA-HU-A4GT 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HU-A4GU       TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4HD 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-IN-A6RI       TCGA-IN-A6RL       TCGA-IN-A6RN       TCGA-IN-A6RO 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-IN-A6RR       TCGA-IN-A6RS       TCGA-IN-A7NR       TCGA-IN-A7NT 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-IN-A7NU       TCGA-IN-AB1V       TCGA-IN-AB1X       TCGA-IP-7968 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-KB-A6F5       TCGA-KB-A93G       TCGA-MX-A5UG       TCGA-RD-A7BS 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-RD-A7BT       TCGA-RD-A7BW       TCGA-RD-A7C1       TCGA-RD-A8MV 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1       TCGA-SW-A7EA 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-SW-A7EB       TCGA-VQ-A8DL       TCGA-VQ-A8DT       TCGA-VQ-A8DU 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-VQ-A8E2       TCGA-VQ-A8E7       TCGA-VQ-A8P2       TCGA-VQ-A8P3 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-VQ-A8PE       TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D       TCGA-VQ-AA64 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-VQ-AA69       TCGA-VQ-AA6A       TCGA-VQ-AA6B       TCGA-VQ-AA6F 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-VQ-AA6G       TCGA-VQ-AA6I       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP7 MUTATED        0      1      1      0
  IGFBP7 WILD-TYPE    127     50     70     69
D706V4, multiclass
[1] "Remove cluster labels:" "IGFBP7 MUTATED"        
clus
  IGFBP7 MUTATED IGFBP7 WILD-TYPE 
               2              316 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-4183       TCGA-BR-4184 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4187       TCGA-BR-4188       TCGA-BR-4191       TCGA-BR-4201 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4292 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6709 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-7704       TCGA-BR-7715       TCGA-BR-7716       TCGA-BR-7717 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-7722       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8060       TCGA-BR-8080       TCGA-BR-8081 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8285       TCGA-BR-8286       TCGA-BR-8289 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8380 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8589       TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8686 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A44U 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4J5       TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4PD       TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8528       TCGA-CD-8529 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8533 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48A       TCGA-CD-A48C 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4300       TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4306       TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4460       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-4474       TCGA-CG-4475       TCGA-CG-4476       TCGA-CG-4477 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5723       TCGA-CG-5724 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5734       TCGA-D7-5577 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-8575       TCGA-D7-8578       TCGA-D7-A4YT       TCGA-D7-A4YU 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-A6EV       TCGA-D7-A6EX       TCGA-D7-A6EY       TCGA-D7-A6EZ 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-D7-A6F0       TCGA-D7-A748       TCGA-EQ-8122       TCGA-EQ-A4SO 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-F1-A72C       TCGA-FP-7916       TCGA-FP-7998       TCGA-HF-7131 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7134       TCGA-HF-7136 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HF-A5NB       TCGA-HJ-7597       TCGA-HU-8602       TCGA-HU-8608 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HU-8610       TCGA-HU-A4GF       TCGA-HU-A4GQ       TCGA-HU-A4GT 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HU-A4GU       TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4HD 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-IN-A6RI       TCGA-IN-A6RL       TCGA-IN-A6RN       TCGA-IN-A6RO 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-IN-A6RR       TCGA-IN-A6RS       TCGA-IN-A7NR       TCGA-IN-A7NT 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-IN-A7NU       TCGA-IN-AB1V       TCGA-IN-AB1X       TCGA-IP-7968 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-KB-A6F5       TCGA-KB-A93G       TCGA-MX-A5UG       TCGA-RD-A7BS 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-RD-A7BT       TCGA-RD-A7BW       TCGA-RD-A7C1       TCGA-RD-A8MV 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1       TCGA-SW-A7EA 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-SW-A7EB       TCGA-VQ-A8DL       TCGA-VQ-A8DT       TCGA-VQ-A8DU 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-VQ-A8E2       TCGA-VQ-A8E7       TCGA-VQ-A8P2       TCGA-VQ-A8P3 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-VQ-A8PE       TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D       TCGA-VQ-AA64 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-VQ-AA69       TCGA-VQ-AA6A       TCGA-VQ-AA6B       TCGA-VQ-AA6F 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
      TCGA-VQ-AA6G       TCGA-VQ-AA6I       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" "IGFBP7 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGFBP7 MUTATED        0      0      3      0      0
  IGFBP7 WILD-TYPE     84     85     82     69     47
D706V5, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFBP7 MUTATED        0      0      0      3
  IGFBP7 WILD-TYPE     95     74    121     77
D706V6, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              0               74
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IGFBP7 MUTATED        2      2      0      0      0      0
  IGFBP7 WILD-TYPE     50     62     72    104     40     59
D706V7, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFBP7 MUTATED        4      0      0
  IGFBP7 WILD-TYPE    213     75     99
D706V8, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              4              213
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFBP7 MUTATED        2      0      1
  IGFBP7 WILD-TYPE    119    108     71
D706V9, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGFBP7 MUTATED        0      0      1      0      2
  IGFBP7 WILD-TYPE     88     66     44     55     45
D706V10, multiclass
        clus
vv       IGFBP7 MUTATED IGFBP7 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(707) Variable = ARPC5L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARPC5L MUTATED        0      3      0      0
  ARPC5L WILD-TYPE    204    134     47      3
D707V1, multiclass
        clus
vv       ARPC5L MUTATED ARPC5L WILD-TYPE
  CLUS_1              0              204
  CLUS_2              3              134
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARPC5L MUTATED        0      1      1      0      0
  ARPC5L WILD-TYPE     39     95     43     88     80
D707V2, multiclass
[1] "Remove cluster labels:" "ARPC5L MUTATED"        
clus
  ARPC5L MUTATED ARPC5L WILD-TYPE 
               2              345 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-6452       TCGA-BR-6453 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8060 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8285       TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360       TCGA-BR-8361 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8366 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8588       TCGA-BR-8589       TCGA-BR-8590       TCGA-BR-8591 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A44U       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J2 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4J4       TCGA-BR-A4J5       TCGA-BR-A4J6       TCGA-BR-A4J7 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4PE       TCGA-BR-A4PF 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4QI       TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-5803       TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8528 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8533       TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48A 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-A4MJ       TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-5716 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A6ET       TCGA-D7-A6EV       TCGA-D7-A6EX       TCGA-D7-A6EY 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A6EZ       TCGA-D7-A6F0       TCGA-D7-A6F2       TCGA-D7-A747 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A748       TCGA-D7-A74A       TCGA-D7-A74B       TCGA-EQ-5647 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177       TCGA-F1-6874 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-F1-A72C       TCGA-FP-7735 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-FP-A4BE       TCGA-FP-A4BF       TCGA-FP-A8CX       TCGA-FP-A9TM 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HF-7131       TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7134 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HF-7136       TCGA-HF-A5NB       TCGA-HJ-7597       TCGA-HU-8238 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-8243       TCGA-HU-8244       TCGA-HU-8249       TCGA-HU-8602 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4G2 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4G3       TCGA-HU-A4G6       TCGA-HU-A4G8       TCGA-HU-A4G9 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GC       TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GJ       TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX       TCGA-HU-A4GY 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4H0       TCGA-HU-A4H2       TCGA-HU-A4H3       TCGA-HU-A4H4 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8       TCGA-HU-A4HB 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-8663       TCGA-IN-A6RI       TCGA-IN-A6RJ       TCGA-IN-A6RL 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A6RN       TCGA-IN-A6RO       TCGA-IN-A6RP       TCGA-IN-A6RR 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A6RS       TCGA-IN-A7NR       TCGA-IN-A7NT       TCGA-IN-A7NU 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-AB1V       TCGA-IN-AB1X       TCGA-IP-7968       TCGA-KB-A6F5 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-KB-A6F7       TCGA-KB-A93G       TCGA-KB-A93J       TCGA-MX-A5UG 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-MX-A5UJ       TCGA-MX-A663       TCGA-MX-A666       TCGA-R5-A7O7 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-R5-A7ZE       TCGA-R5-A7ZF       TCGA-R5-A7ZI       TCGA-R5-A7ZR 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-R5-A805       TCGA-RD-A7BS       TCGA-RD-A7BT       TCGA-RD-A7BW 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A7C1       TCGA-RD-A8MV       TCGA-RD-A8MW       TCGA-RD-A8N0 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A8N1       TCGA-RD-A8N2       TCGA-RD-A8N4       TCGA-RD-A8N5 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA       TCGA-SW-A7EB 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8DL       TCGA-VQ-A8DT       TCGA-VQ-A8DU       TCGA-VQ-A8DV 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8DZ       TCGA-VQ-A8E2       TCGA-VQ-A8E7       TCGA-VQ-A8P2 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8P3       TCGA-VQ-A8PE       TCGA-VQ-A8PK       TCGA-VQ-A8PM 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8PQ       TCGA-VQ-A91Q       TCGA-VQ-A91U       TCGA-VQ-A91V 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A92D       TCGA-VQ-A94T       TCGA-VQ-AA64       TCGA-VQ-AA68 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA69       TCGA-VQ-AA6A       TCGA-VQ-AA6B       TCGA-VQ-AA6F 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA6G       TCGA-VQ-AA6I       TCGA-VQ-AA6J       TCGA-VQ-AA6K 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-ZA-A8F6 
"ARPC5L WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARPC5L MUTATED        0      0      1      0      0
  ARPC5L WILD-TYPE     26     79     72     82     58
D707V3, multiclass
[1] "Remove cluster labels:" "ARPC5L MUTATED"        
clus
  ARPC5L MUTATED ARPC5L WILD-TYPE 
               1              317 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-4183       TCGA-BR-4184 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4187       TCGA-BR-4188       TCGA-BR-4191       TCGA-BR-4201 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4294 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362       TCGA-BR-4363 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369       TCGA-BR-4370 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453       TCGA-BR-6454 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566       TCGA-BR-6705 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6709       TCGA-BR-6710 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7704 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7715       TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8060       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8285       TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360       TCGA-BR-8361 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8366 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8380       TCGA-BR-8381 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8484 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8686       TCGA-BR-8687 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A44U       TCGA-BR-A452 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4       TCGA-BR-A4J5 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI       TCGA-BR-A4QL 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8528       TCGA-CD-8529       TCGA-CD-8530 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48A       TCGA-CD-A48C       TCGA-CD-A4MG 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4442 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4460       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4474       TCGA-CG-4475       TCGA-CG-4476       TCGA-CG-4477 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5723       TCGA-CG-5724 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6527       TCGA-D7-6528 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8578       TCGA-D7-A4YT 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-D7-A6EV       TCGA-D7-A6EX       TCGA-D7-A6EY 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A6EZ       TCGA-D7-A6F0       TCGA-D7-A748       TCGA-EQ-8122 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-EQ-A4SO       TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-F1-A448       TCGA-F1-A72C       TCGA-FP-7916       TCGA-FP-7998 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HF-7131       TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7134 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HF-7136       TCGA-HF-A5NB       TCGA-HJ-7597       TCGA-HU-8602 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4GF       TCGA-HU-A4GQ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX       TCGA-HU-A4GY 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4H2       TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-8663       TCGA-IN-A6RI       TCGA-IN-A6RL       TCGA-IN-A6RN 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A6RO       TCGA-IN-A6RR       TCGA-IN-A6RS       TCGA-IN-A7NR 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A7NT       TCGA-IN-A7NU       TCGA-IN-AB1V       TCGA-IN-AB1X 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IP-7968       TCGA-KB-A6F5       TCGA-KB-A93G       TCGA-MX-A5UG 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A7BS       TCGA-RD-A7BT       TCGA-RD-A7BW       TCGA-RD-A7C1 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A8MV       TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-SW-A7EA       TCGA-SW-A7EB       TCGA-VQ-A8DL       TCGA-VQ-A8DT 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8DU       TCGA-VQ-A8E2       TCGA-VQ-A8E7       TCGA-VQ-A8P2 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8P3       TCGA-VQ-A8PE       TCGA-VQ-A8PK       TCGA-VQ-A8PM 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8PQ       TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA64       TCGA-VQ-AA69       TCGA-VQ-AA6A       TCGA-VQ-AA6B 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA6F       TCGA-VQ-AA6G       TCGA-VQ-AA6I       TCGA-VQ-AA6K 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-ZA-A8F6 
"ARPC5L WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARPC5L MUTATED        0      1      0      0
  ARPC5L WILD-TYPE    127     50     71     69
D707V4, multiclass
[1] "Remove cluster labels:" "ARPC5L MUTATED"        
clus
  ARPC5L MUTATED ARPC5L WILD-TYPE 
               1              317 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-4183       TCGA-BR-4184 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4187       TCGA-BR-4188       TCGA-BR-4191       TCGA-BR-4201 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256       TCGA-BR-4257 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280       TCGA-BR-4294 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362       TCGA-BR-4363 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369       TCGA-BR-4370 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453       TCGA-BR-6454 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566       TCGA-BR-6705 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6709       TCGA-BR-6710 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803       TCGA-BR-6852 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703       TCGA-BR-7704 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7715       TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8060       TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8285       TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360       TCGA-BR-8361 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8366 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8380       TCGA-BR-8381 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8484 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8588       TCGA-BR-8589 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8590       TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8677       TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8682       TCGA-BR-8683       TCGA-BR-8686       TCGA-BR-8687 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A44U       TCGA-BR-A452 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4       TCGA-BR-A4J5 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI       TCGA-BR-A4QL 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8528       TCGA-CD-8529       TCGA-CD-8530 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48A       TCGA-CD-A48C       TCGA-CD-A4MG 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4300 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4301       TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4436       TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4442 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449       TCGA-CG-4455 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4460       TCGA-CG-4465       TCGA-CG-4466       TCGA-CG-4469 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4474       TCGA-CG-4475       TCGA-CG-4476       TCGA-CG-4477 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5723       TCGA-CG-5724 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6527       TCGA-D7-6528 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8573 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8578       TCGA-D7-A4YT 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-D7-A6EV       TCGA-D7-A6EX       TCGA-D7-A6EY 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A6EZ       TCGA-D7-A6F0       TCGA-D7-A748       TCGA-EQ-8122 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-EQ-A4SO       TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-F1-A448       TCGA-F1-A72C       TCGA-FP-7916       TCGA-FP-7998 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HF-7131       TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7134 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HF-7136       TCGA-HF-A5NB       TCGA-HJ-7597       TCGA-HU-8602 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4GF       TCGA-HU-A4GQ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX       TCGA-HU-A4GY 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4H2       TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-8663       TCGA-IN-A6RI       TCGA-IN-A6RL       TCGA-IN-A6RN 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A6RO       TCGA-IN-A6RR       TCGA-IN-A6RS       TCGA-IN-A7NR 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A7NT       TCGA-IN-A7NU       TCGA-IN-AB1V       TCGA-IN-AB1X 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IP-7968       TCGA-KB-A6F5       TCGA-KB-A93G       TCGA-MX-A5UG 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A7BS       TCGA-RD-A7BT       TCGA-RD-A7BW       TCGA-RD-A7C1 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A8MV       TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-SW-A7EA       TCGA-SW-A7EB       TCGA-VQ-A8DL       TCGA-VQ-A8DT 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8DU       TCGA-VQ-A8E2       TCGA-VQ-A8E7       TCGA-VQ-A8P2 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8P3       TCGA-VQ-A8PE       TCGA-VQ-A8PK       TCGA-VQ-A8PM 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8PQ       TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA64       TCGA-VQ-AA69       TCGA-VQ-AA6A       TCGA-VQ-AA6B 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA6F       TCGA-VQ-AA6G       TCGA-VQ-AA6I       TCGA-VQ-AA6K 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-ZA-A8F6 
"ARPC5L WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARPC5L MUTATED        0      0      1      0      1
  ARPC5L WILD-TYPE     84     85     84     69     46
D707V5, multiclass
[1] "Remove cluster labels:" "ARPC5L MUTATED"        
clus
  ARPC5L MUTATED ARPC5L WILD-TYPE 
               2              368 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-4187       TCGA-BR-4191 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4257       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7716 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723       TCGA-BR-7851 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8060       TCGA-BR-8077 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284       TCGA-BR-8286 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8289       TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8297 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8588       TCGA-BR-8589       TCGA-BR-8590       TCGA-BR-8591 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A44U       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CR 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4J5       TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4PD       TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5803       TCGA-CD-5804 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8528       TCGA-CD-8529       TCGA-CD-8530 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48A       TCGA-CD-A48C       TCGA-CD-A4MG 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4301 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4442       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4460       TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4469       TCGA-CG-4474       TCGA-CG-4475       TCGA-CG-4476 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8575 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-D7-A6EV       TCGA-D7-A6EX       TCGA-D7-A6EY 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A6EZ       TCGA-D7-A6F0       TCGA-D7-A6F2       TCGA-D7-A747 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A748       TCGA-D7-A74A       TCGA-EQ-8122       TCGA-EQ-A4SO 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-F1-A72C       TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7916 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE       TCGA-FP-A4BF 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-FP-A8CX       TCGA-FP-A9TM       TCGA-HF-7131       TCGA-HF-7132 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HF-7133       TCGA-HF-7134       TCGA-HF-7136       TCGA-HF-A5NB 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HJ-7597       TCGA-HU-8238       TCGA-HU-8243       TCGA-HU-8244 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-8249       TCGA-HU-8602       TCGA-HU-8604       TCGA-HU-8608 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4G3       TCGA-HU-A4G6 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4G8       TCGA-HU-A4G9       TCGA-HU-A4GC       TCGA-HU-A4GD 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GJ       TCGA-HU-A4GN 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H0       TCGA-HU-A4H2 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4H8       TCGA-HU-A4HB       TCGA-HU-A4HD       TCGA-IN-7806 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663       TCGA-IN-A6RI 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A6RJ       TCGA-IN-A6RL       TCGA-IN-A6RN       TCGA-IN-A6RO 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A6RR       TCGA-IN-A6RS       TCGA-IN-A7NR       TCGA-IN-A7NT 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A7NU       TCGA-IN-AB1V       TCGA-IN-AB1X       TCGA-IP-7968 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-KB-A6F7       TCGA-KB-A93G       TCGA-KB-A93J       TCGA-MX-A5UG 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-MX-A5UJ       TCGA-MX-A663       TCGA-MX-A666       TCGA-R5-A7O7 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-R5-A7ZE       TCGA-R5-A7ZF       TCGA-R5-A7ZI       TCGA-R5-A7ZR 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-R5-A805       TCGA-RD-A7BS       TCGA-RD-A7BT       TCGA-RD-A7BW 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A7C1       TCGA-RD-A8MV       TCGA-RD-A8MW       TCGA-RD-A8N0 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A8N1       TCGA-RD-A8N2       TCGA-RD-A8N4       TCGA-RD-A8N5 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA       TCGA-SW-A7EB 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8DT       TCGA-VQ-A8DU       TCGA-VQ-A8DV       TCGA-VQ-A8DZ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8E2       TCGA-VQ-A8E7       TCGA-VQ-A8P2       TCGA-VQ-A8P3 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8PE       TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A91Q       TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A94T       TCGA-VQ-AA64       TCGA-VQ-AA68       TCGA-VQ-AA69 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA6A       TCGA-VQ-AA6B       TCGA-VQ-AA6F       TCGA-VQ-AA6G 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA6I       TCGA-VQ-AA6J       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARPC5L MUTATED        1      0      0      1
  ARPC5L WILD-TYPE     94     74    121     79
D707V6, multiclass
[1] "Remove cluster labels:" "ARPC5L MUTATED"        
clus
  ARPC5L MUTATED ARPC5L WILD-TYPE 
               2              368 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-4187       TCGA-BR-4191 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4201       TCGA-BR-4253       TCGA-BR-4255       TCGA-BR-4256 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4257       TCGA-BR-4267       TCGA-BR-4279       TCGA-BR-4280 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4294       TCGA-BR-4357       TCGA-BR-4361       TCGA-BR-4362 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4363       TCGA-BR-4366       TCGA-BR-4368       TCGA-BR-4369 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-4370       TCGA-BR-4371       TCGA-BR-6452       TCGA-BR-6453 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7716 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723       TCGA-BR-7851 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8060       TCGA-BR-8077 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8081       TCGA-BR-8284       TCGA-BR-8286 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8289       TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8297 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486       TCGA-BR-8487 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8588       TCGA-BR-8589       TCGA-BR-8590       TCGA-BR-8591 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A44U       TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CR 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J2       TCGA-BR-A4J4 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4J5       TCGA-BR-A4J6       TCGA-BR-A4J7       TCGA-BR-A4J8 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4PD       TCGA-BR-A4PE       TCGA-BR-A4PF       TCGA-BR-A4QI 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5803       TCGA-CD-5804 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8528       TCGA-CD-8529       TCGA-CD-8530 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48A       TCGA-CD-A48C       TCGA-CD-A4MG 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-A4MH       TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4301 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4304       TCGA-CG-4305       TCGA-CG-4306       TCGA-CG-4436 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4438       TCGA-CG-4440       TCGA-CG-4441 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4442       TCGA-CG-4443       TCGA-CG-4444       TCGA-CG-4449 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4460       TCGA-CG-4462       TCGA-CG-4465       TCGA-CG-4466 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4469       TCGA-CG-4474       TCGA-CG-4475       TCGA-CG-4476 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4477       TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5719       TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5723       TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5732       TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8575 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-D7-A6EV       TCGA-D7-A6EX       TCGA-D7-A6EY 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A6EZ       TCGA-D7-A6F0       TCGA-D7-A6F2       TCGA-D7-A747 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A748       TCGA-D7-A74A       TCGA-EQ-8122       TCGA-EQ-A4SO 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-F1-A72C       TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7916 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE       TCGA-FP-A4BF 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-FP-A8CX       TCGA-FP-A9TM       TCGA-HF-7131       TCGA-HF-7132 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HF-7133       TCGA-HF-7134       TCGA-HF-7136       TCGA-HF-A5NB 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HJ-7597       TCGA-HU-8238       TCGA-HU-8243       TCGA-HU-8244 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-8249       TCGA-HU-8602       TCGA-HU-8604       TCGA-HU-8608 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-8610       TCGA-HU-A4G2       TCGA-HU-A4G3       TCGA-HU-A4G6 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4G8       TCGA-HU-A4G9       TCGA-HU-A4GC       TCGA-HU-A4GD 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GJ       TCGA-HU-A4GN 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GP       TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GU 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H0       TCGA-HU-A4H2 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4H8       TCGA-HU-A4HB       TCGA-HU-A4HD       TCGA-IN-7806 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663       TCGA-IN-A6RI 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A6RJ       TCGA-IN-A6RL       TCGA-IN-A6RN       TCGA-IN-A6RO 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A6RR       TCGA-IN-A6RS       TCGA-IN-A7NR       TCGA-IN-A7NT 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A7NU       TCGA-IN-AB1V       TCGA-IN-AB1X       TCGA-IP-7968 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-KB-A6F7       TCGA-KB-A93G       TCGA-KB-A93J       TCGA-MX-A5UG 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-MX-A5UJ       TCGA-MX-A663       TCGA-MX-A666       TCGA-R5-A7O7 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-R5-A7ZE       TCGA-R5-A7ZF       TCGA-R5-A7ZI       TCGA-R5-A7ZR 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-R5-A805       TCGA-RD-A7BS       TCGA-RD-A7BT       TCGA-RD-A7BW 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A7C1       TCGA-RD-A8MV       TCGA-RD-A8MW       TCGA-RD-A8N0 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A8N1       TCGA-RD-A8N2       TCGA-RD-A8N4       TCGA-RD-A8N5 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA       TCGA-SW-A7EB 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8DT       TCGA-VQ-A8DU       TCGA-VQ-A8DV       TCGA-VQ-A8DZ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8E2       TCGA-VQ-A8E7       TCGA-VQ-A8P2       TCGA-VQ-A8P3 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8PE       TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A91Q       TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A94T       TCGA-VQ-AA64       TCGA-VQ-AA68       TCGA-VQ-AA69 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA6A       TCGA-VQ-AA6B       TCGA-VQ-AA6F       TCGA-VQ-AA6G 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA6I       TCGA-VQ-AA6J       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARPC5L MUTATED        0      2      1      0      0      0
  ARPC5L WILD-TYPE     52     62     71    104     40     59
D707V7, multiclass
        clus
vv       ARPC5L MUTATED ARPC5L WILD-TYPE
  CLUS_1              0               52
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARPC5L MUTATED        3      0      0
  ARPC5L WILD-TYPE    214     75     99
D707V8, multiclass
        clus
vv       ARPC5L MUTATED ARPC5L WILD-TYPE
  CLUS_1              3              214
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARPC5L MUTATED        2      0      0
  ARPC5L WILD-TYPE    119    108     72
D707V9, multiclass
[1] "Remove cluster labels:" "ARPC5L MUTATED"        
clus
  ARPC5L MUTATED ARPC5L WILD-TYPE 
               2              299 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-6452       TCGA-BR-6453 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8060       TCGA-BR-8077       TCGA-BR-8080 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360       TCGA-BR-8361 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8368 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8485       TCGA-BR-8486 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8590       TCGA-BR-8591 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A452 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4J1       TCGA-BR-A4J5       TCGA-BR-A4J6       TCGA-BR-A4J7 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI       TCGA-BR-A4QL 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534       TCGA-CD-8535 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5716 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576       TCGA-D7-8578 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU       TCGA-D7-A4YV 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-D7-A6ET       TCGA-D7-A6EV 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A6EX       TCGA-D7-A6EY       TCGA-D7-A6EZ       TCGA-D7-A6F0 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A6F2       TCGA-D7-A747       TCGA-D7-A748       TCGA-D7-A74A 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A74B       TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-FP-A9TM       TCGA-HF-7131       TCGA-HF-7132       TCGA-HF-7134 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HF-7136       TCGA-HU-8238       TCGA-HU-8243       TCGA-HU-8602 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GC       TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GJ       TCGA-HU-A4GN       TCGA-HU-A4GQ       TCGA-HU-A4GT 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H4 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8       TCGA-HU-A4HB 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A6RI       TCGA-IN-A6RJ       TCGA-IN-A6RL       TCGA-IN-A6RN 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A6RP       TCGA-IN-A7NR       TCGA-IN-A7NT       TCGA-IN-A7NU 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-AB1V       TCGA-IN-AB1X       TCGA-IP-7968       TCGA-KB-A6F5 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-KB-A6F7       TCGA-KB-A93J       TCGA-MX-A5UG       TCGA-MX-A5UJ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-MX-A663       TCGA-MX-A666       TCGA-R5-A7O7       TCGA-R5-A7ZE 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-R5-A7ZF       TCGA-R5-A7ZI       TCGA-R5-A7ZR       TCGA-R5-A805 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A7BS       TCGA-RD-A7BW       TCGA-RD-A7C1       TCGA-RD-A8MV 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1       TCGA-RD-A8N5 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA       TCGA-SW-A7EB 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8DL       TCGA-VQ-A8DU       TCGA-VQ-A8DV       TCGA-VQ-A8E2 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8E7       TCGA-VQ-A8P2       TCGA-VQ-A8P3       TCGA-VQ-A8PE 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ       TCGA-VQ-A91Q 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D       TCGA-VQ-A94T 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA64       TCGA-VQ-AA68       TCGA-VQ-AA69       TCGA-VQ-AA6A 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA6B       TCGA-VQ-AA6F       TCGA-VQ-AA6G       TCGA-VQ-AA6I 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA6J       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARPC5L MUTATED        2      0      0      0      0
  ARPC5L WILD-TYPE     86     66     45     55     47
D707V10, multiclass
[1] "Remove cluster labels:" "ARPC5L MUTATED"        
clus
  ARPC5L MUTATED ARPC5L WILD-TYPE 
               2              299 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-6452       TCGA-BR-6453 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8060       TCGA-BR-8077       TCGA-BR-8080 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360       TCGA-BR-8361 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8368 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8485       TCGA-BR-8486 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8590       TCGA-BR-8591 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A452 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4J1       TCGA-BR-A4J5       TCGA-BR-A4J6       TCGA-BR-A4J7 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI       TCGA-BR-A4QL 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534       TCGA-CD-8535 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5716 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576       TCGA-D7-8578 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU       TCGA-D7-A4YV 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-D7-A6ET       TCGA-D7-A6EV 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A6EX       TCGA-D7-A6EY       TCGA-D7-A6EZ       TCGA-D7-A6F0 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A6F2       TCGA-D7-A747       TCGA-D7-A748       TCGA-D7-A74A 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-D7-A74B       TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-FP-A9TM       TCGA-HF-7131       TCGA-HF-7132       TCGA-HF-7134 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HF-7136       TCGA-HU-8238       TCGA-HU-8243       TCGA-HU-8602 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GC       TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GJ       TCGA-HU-A4GN       TCGA-HU-A4GQ       TCGA-HU-A4GT 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H4 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8       TCGA-HU-A4HB 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A6RI       TCGA-IN-A6RJ       TCGA-IN-A6RL       TCGA-IN-A6RN 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-A6RP       TCGA-IN-A7NR       TCGA-IN-A7NT       TCGA-IN-A7NU 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-IN-AB1V       TCGA-IN-AB1X       TCGA-IP-7968       TCGA-KB-A6F5 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-KB-A6F7       TCGA-KB-A93J       TCGA-MX-A5UG       TCGA-MX-A5UJ 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-MX-A663       TCGA-MX-A666       TCGA-R5-A7O7       TCGA-R5-A7ZE 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-R5-A7ZF       TCGA-R5-A7ZI       TCGA-R5-A7ZR       TCGA-R5-A805 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A7BS       TCGA-RD-A7BW       TCGA-RD-A7C1       TCGA-RD-A8MV 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1       TCGA-RD-A8N5 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA       TCGA-SW-A7EB 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8DL       TCGA-VQ-A8DU       TCGA-VQ-A8DV       TCGA-VQ-A8E2 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8E7       TCGA-VQ-A8P2       TCGA-VQ-A8P3       TCGA-VQ-A8PE 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ       TCGA-VQ-A91Q 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D       TCGA-VQ-A94T 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA64       TCGA-VQ-AA68       TCGA-VQ-AA69       TCGA-VQ-AA6A 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA6B       TCGA-VQ-AA6F       TCGA-VQ-AA6G       TCGA-VQ-AA6I 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 
      TCGA-VQ-AA6J       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" "ARPC5L WILD-TYPE" 

Clustering(708) Variable = TEX13A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX13A MUTATED        1      4      0      0
  TEX13A WILD-TYPE    203    133     47      3
D708V1, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              1              203
  CLUS_2              4              133
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEX13A MUTATED        0      3      0      1      1
  TEX13A WILD-TYPE     39     93     44     87     79
D708V2, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEX13A MUTATED        0      2      1      0      0
  TEX13A WILD-TYPE     26     77     72     82     58
D708V3, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX13A MUTATED        0      2      1      0
  TEX13A WILD-TYPE    127     49     70     69
D708V4, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              0              127
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEX13A MUTATED        1      0      3      0      1
  TEX13A WILD-TYPE     83     85     82     69     46
D708V5, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               85
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX13A MUTATED        1      0      2      2
  TEX13A WILD-TYPE     94     74    119     78
D708V6, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              1               94
  CLUS_2              0               74
  CLUS_3              2              119
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TEX13A MUTATED        2      1      1      0      0      1
  TEX13A WILD-TYPE     50     63     71    104     40     58
D708V7, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              2               50
  CLUS_2              1               63
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TEX13A MUTATED        3      1      1
  TEX13A WILD-TYPE    214     74     98
D708V8, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              3              214
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TEX13A MUTATED        3      0      2
  TEX13A WILD-TYPE    118    108     70
D708V9, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEX13A MUTATED        1      0      1      1      2
  TEX13A WILD-TYPE     87     66     44     54     45
D708V10, multiclass
        clus
vv       TEX13A MUTATED TEX13A WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(709) Variable = KCNQ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNQ1 MUTATED        0      6      0      0
  KCNQ1 WILD-TYPE    204    131     47      3
D709V1, multiclass
        clus
vv       KCNQ1 MUTATED KCNQ1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             6             131
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNQ1 MUTATED        1      3      1      0      0
  KCNQ1 WILD-TYPE     38     93     43     88     80
D709V2, multiclass
        clus
vv       KCNQ1 MUTATED KCNQ1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNQ1 MUTATED        0      0      3      0      3
  KCNQ1 WILD-TYPE     26     79     70     82     55
D709V3, multiclass
        clus
vv       KCNQ1 MUTATED KCNQ1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              79
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNQ1 MUTATED        1      5      0      0
  KCNQ1 WILD-TYPE    126     46     71     69
D709V4, multiclass
        clus
vv       KCNQ1 MUTATED KCNQ1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             5              46
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNQ1 MUTATED        0      0      5      1      0
  KCNQ1 WILD-TYPE     84     85     80     68     47
D709V5, multiclass
        clus
vv       KCNQ1 MUTATED KCNQ1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNQ1 MUTATED        1      1      0      4
  KCNQ1 WILD-TYPE     94     73    121     76
D709V6, multiclass
        clus
vv       KCNQ1 MUTATED KCNQ1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNQ1 MUTATED        3      1      0      2      0      0
  KCNQ1 WILD-TYPE     49     63     72    102     40     59
D709V7, multiclass
        clus
vv       KCNQ1 MUTATED KCNQ1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             1              63
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNQ1 MUTATED        4      0      2
  KCNQ1 WILD-TYPE    213     75     97
D709V8, multiclass
        clus
vv       KCNQ1 MUTATED KCNQ1 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNQ1 MUTATED        3      0      0
  KCNQ1 WILD-TYPE    118    108     72
D709V9, multiclass
        clus
vv       KCNQ1 MUTATED KCNQ1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0             108
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNQ1 MUTATED        2      0      0      0      1
  KCNQ1 WILD-TYPE     86     66     45     55     46
D709V10, multiclass
        clus
vv       KCNQ1 MUTATED KCNQ1 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(710) Variable = HAPLN1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAPLN1 MUTATED        1      7      1      0
  HAPLN1 WILD-TYPE    203    130     46      3
D710V1, multiclass
        clus
vv       HAPLN1 MUTATED HAPLN1 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              7              130
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAPLN1 MUTATED        1      4      1      0      1
  HAPLN1 WILD-TYPE     38     92     43     88     79
D710V2, multiclass
        clus
vv       HAPLN1 MUTATED HAPLN1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAPLN1 MUTATED        1      3      1      1      2
  HAPLN1 WILD-TYPE     25     76     72     81     56
D710V3, multiclass
        clus
vv       HAPLN1 MUTATED HAPLN1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAPLN1 MUTATED        2      3      2      1
  HAPLN1 WILD-TYPE    125     48     69     68
D710V4, multiclass
        clus
vv       HAPLN1 MUTATED HAPLN1 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              3               48
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAPLN1 MUTATED        1      1      3      1      3
  HAPLN1 WILD-TYPE     83     84     82     68     44
D710V5, multiclass
        clus
vv       HAPLN1 MUTATED HAPLN1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              3               82
  CLUS_4              1               68
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HAPLN1 MUTATED        2      1      0      6
  HAPLN1 WILD-TYPE     93     73    121     74
D710V6, multiclass
        clus
vv       HAPLN1 MUTATED HAPLN1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HAPLN1 MUTATED        1      4      1      2      0      1
  HAPLN1 WILD-TYPE     51     60     71    102     40     58
D710V7, multiclass
        clus
vv       HAPLN1 MUTATED HAPLN1 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HAPLN1 MUTATED        6      1      2
  HAPLN1 WILD-TYPE    211     74     97
D710V8, multiclass
        clus
vv       HAPLN1 MUTATED HAPLN1 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              1               74
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HAPLN1 MUTATED        2      2      3
  HAPLN1 WILD-TYPE    119    106     69
D710V9, multiclass
        clus
vv       HAPLN1 MUTATED HAPLN1 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              2              106
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HAPLN1 MUTATED        2      1      1      0      3
  HAPLN1 WILD-TYPE     86     65     44     55     44
D710V10, multiclass
        clus
vv       HAPLN1 MUTATED HAPLN1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(711) Variable = AXIN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AXIN1 MUTATED        5      5      4      0
  AXIN1 WILD-TYPE    199    132     43      3
D711V1, multiclass
        clus
vv       AXIN1 MUTATED AXIN1 WILD-TYPE
  CLUS_1             5             199
  CLUS_2             5             132
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AXIN1 MUTATED        2      8      0      1      1
  AXIN1 WILD-TYPE     37     88     44     87     79
D711V2, multiclass
        clus
vv       AXIN1 MUTATED AXIN1 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             8              88
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AXIN1 MUTATED        0      6      4      1      2
  AXIN1 WILD-TYPE     26     73     69     81     56
D711V3, multiclass
        clus
vv       AXIN1 MUTATED AXIN1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             6              73
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AXIN1 MUTATED        3      8      1      1
  AXIN1 WILD-TYPE    124     43     70     68
D711V4, multiclass
        clus
vv       AXIN1 MUTATED AXIN1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             8              43
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AXIN1 MUTATED        1      2      6      2      2
  AXIN1 WILD-TYPE     83     83     79     67     45
D711V5, multiclass
        clus
vv       AXIN1 MUTATED AXIN1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             6              79
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AXIN1 MUTATED        4      2      0      7
  AXIN1 WILD-TYPE     91     72    121     73
D711V6, multiclass
        clus
vv       AXIN1 MUTATED AXIN1 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AXIN1 MUTATED        5      2      3      2      1      1
  AXIN1 WILD-TYPE     47     62     69    102     39     58
D711V7, multiclass
        clus
vv       AXIN1 MUTATED AXIN1 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             2              62
  CLUS_3             3              69
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AXIN1 MUTATED       11      2      1
  AXIN1 WILD-TYPE    206     73     98
D711V8, multiclass
        clus
vv       AXIN1 MUTATED AXIN1 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AXIN1 MUTATED        5      2      3
  AXIN1 WILD-TYPE    116    106     69
D711V9, multiclass
        clus
vv       AXIN1 MUTATED AXIN1 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             2             106
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AXIN1 MUTATED        1      2      0      0      7
  AXIN1 WILD-TYPE     87     64     45     55     40
D711V10, multiclass
        clus
vv       AXIN1 MUTATED AXIN1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             2              64
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(712) Variable = AOC3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AOC3 MUTATED        0     11      0      0
  AOC3 WILD-TYPE    204    126     47      3
D712V1, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            0            204
  CLUS_2           11            126
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AOC3 MUTATED        0      5      0      0      1
  AOC3 WILD-TYPE     39     91     44     88     79
D712V2, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            5             91
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AOC3 MUTATED        1      1      3      1      3
  AOC3 WILD-TYPE     25     78     70     81     55
D712V3, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             78
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AOC3 MUTATED        2      5      1      1
  AOC3 WILD-TYPE    125     46     70     68
D712V4, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            5             46
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AOC3 MUTATED        1      1      5      2      2
  AOC3 WILD-TYPE     83     84     80     67     45
D712V5, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            1             84
  CLUS_3            5             80
  CLUS_4            2             67
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AOC3 MUTATED        5      1      0      5
  AOC3 WILD-TYPE     90     73    121     75
D712V6, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            5             90
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AOC3 MUTATED        3      5      1      1      0      1
  AOC3 WILD-TYPE     49     59     71    103     40     58
D712V7, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            5             59
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AOC3 MUTATED        9      0      2
  AOC3 WILD-TYPE    208     75     97
D712V8, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            9            208
  CLUS_2            0             75
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AOC3 MUTATED        3      1      2
  AOC3 WILD-TYPE    118    107     70
D712V9, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AOC3 MUTATED        2      0      1      0      3
  AOC3 WILD-TYPE     86     66     44     55     44
D712V10, multiclass
        clus
vv       AOC3 MUTATED AOC3 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(713) Variable = ANKRD23 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD23 MUTATED        0      6      0      0
  ANKRD23 WILD-TYPE    204    131     47      3
D713V1, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               6               131
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD23 MUTATED        0      4      1      0      0
  ANKRD23 WILD-TYPE     39     92     43     88     80
D713V2, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               4                92
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD23 MUTATED        0      2      1      1      1
  ANKRD23 WILD-TYPE     26     77     72     81     57
D713V3, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               1                72
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD23 MUTATED        0      3      1      1
  ANKRD23 WILD-TYPE    127     48     70     68
D713V4, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               3                48
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD23 MUTATED        0      1      2      0      2
  ANKRD23 WILD-TYPE     84     84     83     69     45
D713V5, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               2                83
  CLUS_4               0                69
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD23 MUTATED        0      1      0      4
  ANKRD23 WILD-TYPE     95     73    121     76
D713V6, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               0                95
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANKRD23 MUTATED        3      0      1      2      0      0
  ANKRD23 WILD-TYPE     49     64     71    102     40     59
D713V7, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               0                64
  CLUS_3               1                71
  CLUS_4               2               102
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD23 MUTATED        4      2      0
  ANKRD23 WILD-TYPE    213     73     99
D713V8, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               4               213
  CLUS_2               2                73
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD23 MUTATED        4      0      1
  ANKRD23 WILD-TYPE    117    108     71
D713V9, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               0               108
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD23 MUTATED        1      1      0      0      3
  ANKRD23 WILD-TYPE     87     65     45     55     44
D713V10, multiclass
        clus
vv       ANKRD23 MUTATED ANKRD23 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               1                65
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(714) Variable = SOHLH2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOHLH2 MUTATED        8      8      1      0
  SOHLH2 WILD-TYPE    196    129     46      3
D714V1, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              8              196
  CLUS_2              8              129
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOHLH2 MUTATED        0      9      0      5      1
  SOHLH2 WILD-TYPE     39     87     44     83     79
D714V2, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              9               87
  CLUS_3              0               44
  CLUS_4              5               83
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOHLH2 MUTATED        0      5      4      4      2
  SOHLH2 WILD-TYPE     26     74     69     78     56
D714V3, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              5               74
  CLUS_3              4               69
  CLUS_4              4               78
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOHLH2 MUTATED        6      4      2      3
  SOHLH2 WILD-TYPE    121     47     69     66
D714V4, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              6              121
  CLUS_2              4               47
  CLUS_3              2               69
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOHLH2 MUTATED        3      4      3      3      2
  SOHLH2 WILD-TYPE     81     81     82     66     45
D714V5, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              3               81
  CLUS_2              4               81
  CLUS_3              3               82
  CLUS_4              3               66
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SOHLH2 MUTATED        5      4      2      4
  SOHLH2 WILD-TYPE     90     70    119     76
D714V6, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              5               90
  CLUS_2              4               70
  CLUS_3              2              119
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SOHLH2 MUTATED        2      3      3      5      0      4
  SOHLH2 WILD-TYPE     50     61     69     99     40     55
D714V7, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              3               61
  CLUS_3              3               69
  CLUS_4              5               99
  CLUS_5              0               40
  CLUS_6              4               55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SOHLH2 MUTATED        7      4      6
  SOHLH2 WILD-TYPE    210     71     93
D714V8, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              7              210
  CLUS_2              4               71
  CLUS_3              6               93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SOHLH2 MUTATED        5      5      3
  SOHLH2 WILD-TYPE    116    103     69
D714V9, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              5              103
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SOHLH2 MUTATED        1      3      1      2      6
  SOHLH2 WILD-TYPE     87     63     44     53     41
D714V10, multiclass
        clus
vv       SOHLH2 MUTATED SOHLH2 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              3               63
  CLUS_3              1               44
  CLUS_4              2               53
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(715) Variable = SLC26A7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A7 MUTATED        4      8      2      0
  SLC26A7 WILD-TYPE    200    129     45      3
D715V1, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               4               200
  CLUS_2               8               129
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC26A7 MUTATED        2      7      1      2      2
  SLC26A7 WILD-TYPE     37     89     43     86     78
D715V2, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               2                37
  CLUS_2               7                89
  CLUS_3               1                43
  CLUS_4               2                86
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC26A7 MUTATED        1      2      4      0      4
  SLC26A7 WILD-TYPE     25     77     69     82     54
D715V3, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               2                77
  CLUS_3               4                69
  CLUS_4               0                82
  CLUS_5               4                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A7 MUTATED        3      5      2      1
  SLC26A7 WILD-TYPE    124     46     69     68
D715V4, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               5                46
  CLUS_3               2                69
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC26A7 MUTATED        2      1      5      4      3
  SLC26A7 WILD-TYPE     82     84     80     65     44
D715V5, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               2                82
  CLUS_2               1                84
  CLUS_3               5                80
  CLUS_4               4                65
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A7 MUTATED        8      0      4      3
  SLC26A7 WILD-TYPE     87     74    117     77
D715V6, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               8                87
  CLUS_2               0                74
  CLUS_3               4               117
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC26A7 MUTATED        3      3      3      2      3      1
  SLC26A7 WILD-TYPE     49     61     69    102     37     58
D715V7, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               3                61
  CLUS_3               3                69
  CLUS_4               2               102
  CLUS_5               3                37
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A7 MUTATED       10      1      4
  SLC26A7 WILD-TYPE    207     74     95
D715V8, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1              10               207
  CLUS_2               1                74
  CLUS_3               4                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A7 MUTATED        6      3      4
  SLC26A7 WILD-TYPE    115    105     68
D715V9, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               6               115
  CLUS_2               3               105
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC26A7 MUTATED        4      0      3      1      5
  SLC26A7 WILD-TYPE     84     66     42     54     42
D715V10, multiclass
        clus
vv       SLC26A7 MUTATED SLC26A7 WILD-TYPE
  CLUS_1               4                84
  CLUS_2               0                66
  CLUS_3               3                42
  CLUS_4               1                54
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(716) Variable = RHOBTB2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOBTB2 MUTATED        3     15      2      0
  RHOBTB2 WILD-TYPE    201    122     45      3
D716V1, multiclass
        clus
vv       RHOBTB2 MUTATED RHOBTB2 WILD-TYPE
  CLUS_1               3               201
  CLUS_2              15               122
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOBTB2 MUTATED        0     11      2      2      1
  RHOBTB2 WILD-TYPE     39     85     42     86     79
D716V2, multiclass
        clus
vv       RHOBTB2 MUTATED RHOBTB2 WILD-TYPE
  CLUS_1               0                39
  CLUS_2              11                85
  CLUS_3               2                42
  CLUS_4               2                86
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOBTB2 MUTATED        0      9      2      2      4
  RHOBTB2 WILD-TYPE     26     70     71     80     54
D716V3, multiclass
        clus
vv       RHOBTB2 MUTATED RHOBTB2 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               9                70
  CLUS_3               2                71
  CLUS_4               2                80
  CLUS_5               4                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOBTB2 MUTATED        2      7      5      3
  RHOBTB2 WILD-TYPE    125     44     66     66
D716V4, multiclass
        clus
vv       RHOBTB2 MUTATED RHOBTB2 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               7                44
  CLUS_3               5                66
  CLUS_4               3                66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOBTB2 MUTATED        1      2      9      3      2
  RHOBTB2 WILD-TYPE     83     83     76     66     45
D716V5, multiclass
        clus
vv       RHOBTB2 MUTATED RHOBTB2 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               2                83
  CLUS_3               9                76
  CLUS_4               3                66
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RHOBTB2 MUTATED        6      4      0      7
  RHOBTB2 WILD-TYPE     89     70    121     73
D716V6, multiclass
        clus
vv       RHOBTB2 MUTATED RHOBTB2 WILD-TYPE
  CLUS_1               6                89
  CLUS_2               4                70
  CLUS_3               0               121
  CLUS_4               7                73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RHOBTB2 MUTATED        3      8      5      2      2      0
  RHOBTB2 WILD-TYPE     49     56     67    102     38     59
D716V7, multiclass
        clus
vv       RHOBTB2 MUTATED RHOBTB2 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               8                56
  CLUS_3               5                67
  CLUS_4               2               102
  CLUS_5               2                38
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RHOBTB2 MUTATED       17      2      1
  RHOBTB2 WILD-TYPE    200     73     98
D716V8, multiclass
        clus
vv       RHOBTB2 MUTATED RHOBTB2 WILD-TYPE
  CLUS_1              17               200
  CLUS_2               2                73
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  RHOBTB2 MUTATED        6      1      8
  RHOBTB2 WILD-TYPE    115    107     64
D716V9, multiclass
        clus
vv       RHOBTB2 MUTATED RHOBTB2 WILD-TYPE
  CLUS_1               6               115
  CLUS_2               1               107
  CLUS_3               8                64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RHOBTB2 MUTATED        4      1      3      0      7
  RHOBTB2 WILD-TYPE     84     65     42     55     40
D716V10, multiclass
        clus
vv       RHOBTB2 MUTATED RHOBTB2 WILD-TYPE
  CLUS_1               4                84
  CLUS_2               1                65
  CLUS_3               3                42
  CLUS_4               0                55
  CLUS_5               7                40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(717) Variable = DGKA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGKA MUTATED        2      5      2      0
  DGKA WILD-TYPE    202    132     45      3
D717V1, multiclass
        clus
vv       DGKA MUTATED DGKA WILD-TYPE
  CLUS_1            2            202
  CLUS_2            5            132
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGKA MUTATED        0      3      0      1      1
  DGKA WILD-TYPE     39     93     44     87     79
D717V2, multiclass
        clus
vv       DGKA MUTATED DGKA WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            0             44
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGKA MUTATED        0      3      2      0      3
  DGKA WILD-TYPE     26     76     71     82     55
D717V3, multiclass
        clus
vv       DGKA MUTATED DGKA WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGKA MUTATED        2      5      1      0
  DGKA WILD-TYPE    125     46     70     69
D717V4, multiclass
        clus
vv       DGKA MUTATED DGKA WILD-TYPE
  CLUS_1            2            125
  CLUS_2            5             46
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGKA MUTATED        1      1      2      1      2
  DGKA WILD-TYPE     83     84     83     68     45
D717V5, multiclass
        clus
vv       DGKA MUTATED DGKA WILD-TYPE
  CLUS_1            1             83
  CLUS_2            1             84
  CLUS_3            2             83
  CLUS_4            1             68
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGKA MUTATED        1      1      1      4
  DGKA WILD-TYPE     94     73    120     76
D717V6, multiclass
        clus
vv       DGKA MUTATED DGKA WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DGKA MUTATED        1      6      1      0      0      1
  DGKA WILD-TYPE     51     58     71    104     40     58
D717V7, multiclass
        clus
vv       DGKA MUTATED DGKA WILD-TYPE
  CLUS_1            1             51
  CLUS_2            6             58
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DGKA MUTATED        7      0      2
  DGKA WILD-TYPE    210     75     97
D717V8, multiclass
        clus
vv       DGKA MUTATED DGKA WILD-TYPE
  CLUS_1            7            210
  CLUS_2            0             75
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DGKA MUTATED        3      0      2
  DGKA WILD-TYPE    118    108     70
D717V9, multiclass
        clus
vv       DGKA MUTATED DGKA WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGKA MUTATED        0      0      2      1      2
  DGKA WILD-TYPE     88     66     43     54     45
D717V10, multiclass
        clus
vv       DGKA MUTATED DGKA WILD-TYPE
  CLUS_1            0             88
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            1             54
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(718) Variable = KIAA1797 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1797 MUTATED        4     14      1      0
  KIAA1797 WILD-TYPE    200    123     46      3
D718V1, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                4                200
  CLUS_2               14                123
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1797 MUTATED        2      7      3      2      2
  KIAA1797 WILD-TYPE     37     89     41     86     78
D718V2, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                7                 89
  CLUS_3                3                 41
  CLUS_4                2                 86
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1797 MUTATED        2      4      2      1      5
  KIAA1797 WILD-TYPE     24     75     71     81     53
D718V3, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                4                 75
  CLUS_3                2                 71
  CLUS_4                1                 81
  CLUS_5                5                 53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1797 MUTATED        3      7      2      2
  KIAA1797 WILD-TYPE    124     44     69     67
D718V4, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                3                124
  CLUS_2                7                 44
  CLUS_3                2                 69
  CLUS_4                2                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1797 MUTATED        1      2     11      3      1
  KIAA1797 WILD-TYPE     83     83     74     66     46
D718V5, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 83
  CLUS_3               11                 74
  CLUS_4                3                 66
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1797 MUTATED        5      2      4      7
  KIAA1797 WILD-TYPE     90     72    117     73
D718V6, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                5                 90
  CLUS_2                2                 72
  CLUS_3                4                117
  CLUS_4                7                 73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1797 MUTATED        5      8      2      3      0      1
  KIAA1797 WILD-TYPE     47     56     70    101     40     58
D718V7, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                5                 47
  CLUS_2                8                 56
  CLUS_3                2                 70
  CLUS_4                3                101
  CLUS_5                0                 40
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1797 MUTATED       14      3      2
  KIAA1797 WILD-TYPE    203     72     97
D718V8, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1               14                203
  CLUS_2                3                 72
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1797 MUTATED        6      3      6
  KIAA1797 WILD-TYPE    115    105     66
D718V9, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                6                115
  CLUS_2                3                105
  CLUS_3                6                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1797 MUTATED        3      2      4      2      4
  KIAA1797 WILD-TYPE     85     64     41     53     43
D718V10, multiclass
        clus
vv       KIAA1797 MUTATED KIAA1797 WILD-TYPE
  CLUS_1                3                 85
  CLUS_2                2                 64
  CLUS_3                4                 41
  CLUS_4                2                 53
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(719) Variable = SERPINB10 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB10 MUTATED        0      7      1      0
  SERPINB10 WILD-TYPE    204    130     46      3
D719V1, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 0                 204
  CLUS_2                 7                 130
  CLUS_3                 1                  46
  CLUS_4                 0                   3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB10 MUTATED        1      4      2      0      1
  SERPINB10 WILD-TYPE     38     92     42     88     79
D719V2, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 1                  38
  CLUS_2                 4                  92
  CLUS_3                 2                  42
  CLUS_4                 0                  88
  CLUS_5                 1                  79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB10 MUTATED        1      1      0      1      3
  SERPINB10 WILD-TYPE     25     78     73     81     55
D719V3, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 1                  25
  CLUS_2                 1                  78
  CLUS_3                 0                  73
  CLUS_4                 1                  81
  CLUS_5                 3                  55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB10 MUTATED        2      2      1      1
  SERPINB10 WILD-TYPE    125     49     70     68
D719V4, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 2                 125
  CLUS_2                 2                  49
  CLUS_3                 1                  70
  CLUS_4                 1                  68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB10 MUTATED        0      0      5      2      1
  SERPINB10 WILD-TYPE     84     85     80     67     46
D719V5, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 0                  84
  CLUS_2                 0                  85
  CLUS_3                 5                  80
  CLUS_4                 2                  67
  CLUS_5                 1                  46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB10 MUTATED        3      0      1      4
  SERPINB10 WILD-TYPE     92     74    120     76
D719V6, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 3                  92
  CLUS_2                 0                  74
  CLUS_3                 1                 120
  CLUS_4                 4                  76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERPINB10 MUTATED        3      3      1      0      1      0
  SERPINB10 WILD-TYPE     49     61     71    104     39     59
D719V7, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 3                  49
  CLUS_2                 3                  61
  CLUS_3                 1                  71
  CLUS_4                 0                 104
  CLUS_5                 1                  39
  CLUS_6                 0                  59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  SERPINB10 MUTATED        8      0      0
  SERPINB10 WILD-TYPE    209     75     99
D719V8, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 8                 209
  CLUS_2                 0                  75
  CLUS_3                 0                  99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  SERPINB10 MUTATED        4      1      3
  SERPINB10 WILD-TYPE    117    107     69
D719V9, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 4                 117
  CLUS_2                 1                 107
  CLUS_3                 3                  69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB10 MUTATED        4      0      2      0      2
  SERPINB10 WILD-TYPE     84     66     43     55     45
D719V10, multiclass
        clus
vv       SERPINB10 MUTATED SERPINB10 WILD-TYPE
  CLUS_1                 4                  84
  CLUS_2                 0                  66
  CLUS_3                 2                  43
  CLUS_4                 0                  55
  CLUS_5                 2                  45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(720) Variable = SMCHD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMCHD1 MUTATED        6      7      1      0
  SMCHD1 WILD-TYPE    198    130     46      3
D720V1, multiclass
        clus
vv       SMCHD1 MUTATED SMCHD1 WILD-TYPE
  CLUS_1              6              198
  CLUS_2              7              130
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMCHD1 MUTATED        2      5      2      2      0
  SMCHD1 WILD-TYPE     37     91     42     86     80
D720V2, multiclass
        clus
vv       SMCHD1 MUTATED SMCHD1 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              5               91
  CLUS_3              2               42
  CLUS_4              2               86
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMCHD1 MUTATED        1      4      3      0      3
  SMCHD1 WILD-TYPE     25     75     70     82     55
D720V3, multiclass
        clus
vv       SMCHD1 MUTATED SMCHD1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              4               75
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMCHD1 MUTATED        4      4      3      0
  SMCHD1 WILD-TYPE    123     47     68     69
D720V4, multiclass
        clus
vv       SMCHD1 MUTATED SMCHD1 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              4               47
  CLUS_3              3               68
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMCHD1 MUTATED        2      1      7      3      0
  SMCHD1 WILD-TYPE     82     84     78     66     47
D720V5, multiclass
        clus
vv       SMCHD1 MUTATED SMCHD1 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              1               84
  CLUS_3              7               78
  CLUS_4              3               66
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMCHD1 MUTATED        4      1      2      6
  SMCHD1 WILD-TYPE     91     73    119     74
D720V6, multiclass
        clus
vv       SMCHD1 MUTATED SMCHD1 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMCHD1 MUTATED        3      4      5      0      0      2
  SMCHD1 WILD-TYPE     49     60     67    104     40     57
D720V7, multiclass
        clus
vv       SMCHD1 MUTATED SMCHD1 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              4               60
  CLUS_3              5               67
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SMCHD1 MUTATED       12      0      2
  SMCHD1 WILD-TYPE    205     75     97
D720V8, multiclass
        clus
vv       SMCHD1 MUTATED SMCHD1 WILD-TYPE
  CLUS_1             12              205
  CLUS_2              0               75
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SMCHD1 MUTATED        5      0      2
  SMCHD1 WILD-TYPE    116    108     70
D720V9, multiclass
        clus
vv       SMCHD1 MUTATED SMCHD1 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMCHD1 MUTATED        2      0      1      1      3
  SMCHD1 WILD-TYPE     86     66     44     54     44
D720V10, multiclass
        clus
vv       SMCHD1 MUTATED SMCHD1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(721) Variable = MOCS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOCS2 MUTATED        2      3      0      0
  MOCS2 WILD-TYPE    202    134     47      3
D721V1, multiclass
        clus
vv       MOCS2 MUTATED MOCS2 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             3             134
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOCS2 MUTATED        0      2      0      0      0
  MOCS2 WILD-TYPE     39     94     44     88     80
D721V2, multiclass
[1] "Remove cluster labels:" "MOCS2 MUTATED"         
clus
  MOCS2 MUTATED MOCS2 WILD-TYPE 
              2             345 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8060 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8081 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4J4      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-A4MJ      TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-5716 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2      TCGA-D7-A747 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B      TCGA-EQ-5647 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7735 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-A4BE      TCGA-FP-A4BF      TCGA-FP-A8CX      TCGA-FP-A9TM 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7133      TCGA-HF-7134      TCGA-HF-7136 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8238      TCGA-HU-8243 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-8244      TCGA-HU-8249      TCGA-HU-8602      TCGA-HU-8604 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4G6      TCGA-HU-A4G8      TCGA-HU-A4G9      TCGA-HU-A4GC 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-HU-A4HD 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-A6RO      TCGA-IN-A6RP      TCGA-IN-A6RR      TCGA-IN-A6RS 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-KB-A93G      TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-MX-A663      TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-R5-A7ZF      TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-R5-A805      TCGA-RD-A7BS      TCGA-RD-A7BT      TCGA-RD-A7BW 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-RD-A7C1      TCGA-RD-A8MV      TCGA-RD-A8MW      TCGA-RD-A8N0 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-RD-A8N1      TCGA-RD-A8N2      TCGA-RD-A8N4      TCGA-RD-A8N5 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU      TCGA-VQ-A8DV 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-A8DZ      TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-A8P3      TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-A8PQ      TCGA-VQ-A91Q      TCGA-VQ-A91U      TCGA-VQ-A91V 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-A92D      TCGA-VQ-A94T      TCGA-VQ-AA64      TCGA-VQ-AA68 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6J      TCGA-VQ-AA6K 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-ZA-A8F6 
"MOCS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOCS2 MUTATED        1      2      0      1      1
  MOCS2 WILD-TYPE     25     77     73     81     57
D721V3, multiclass
        clus
vv       MOCS2 MUTATED MOCS2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             0              73
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOCS2 MUTATED        2      1      1      1
  MOCS2 WILD-TYPE    125     50     70     68
D721V4, multiclass
        clus
vv       MOCS2 MUTATED MOCS2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             1              50
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOCS2 MUTATED        0      1      2      2      0
  MOCS2 WILD-TYPE     84     84     83     67     47
D721V5, multiclass
        clus
vv       MOCS2 MUTATED MOCS2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             2              83
  CLUS_4             2              67
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MOCS2 MUTATED        2      2      0      1
  MOCS2 WILD-TYPE     93     72    121     79
D721V6, multiclass
        clus
vv       MOCS2 MUTATED MOCS2 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MOCS2 MUTATED        1      3      1      0      0      0
  MOCS2 WILD-TYPE     51     61     71    104     40     59
D721V7, multiclass
        clus
vv       MOCS2 MUTATED MOCS2 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MOCS2 MUTATED        5      0      0
  MOCS2 WILD-TYPE    212     75     99
D721V8, multiclass
        clus
vv       MOCS2 MUTATED MOCS2 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MOCS2 MUTATED        2      0      0
  MOCS2 WILD-TYPE    119    108     72
D721V9, multiclass
[1] "Remove cluster labels:" "MOCS2 MUTATED"         
clus
  MOCS2 MUTATED MOCS2 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-A9TM      TCGA-HF-7131      TCGA-HF-7134      TCGA-HF-7136 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-IN-7806 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MOCS2 MUTATED        1      0      0      0      1
  MOCS2 WILD-TYPE     87     66     45     55     46
D721V10, multiclass
[1] "Remove cluster labels:" "MOCS2 MUTATED"         
clus
  MOCS2 MUTATED MOCS2 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-FP-A9TM      TCGA-HF-7131      TCGA-HF-7134      TCGA-HF-7136 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-IN-7806 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" "MOCS2 WILD-TYPE" 

Clustering(722) Variable = DGKD MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGKD MUTATED        1      5      0      0
  DGKD WILD-TYPE    203    132     47      3
D722V1, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            1            203
  CLUS_2            5            132
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGKD MUTATED        0      4      0      1      0
  DGKD WILD-TYPE     39     92     44     87     80
D722V2, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            0             44
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGKD MUTATED        0      2      2      0      1
  DGKD WILD-TYPE     26     77     71     82     57
D722V3, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGKD MUTATED        2      2      1      0
  DGKD WILD-TYPE    125     49     70     69
D722V4, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            2            125
  CLUS_2            2             49
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGKD MUTATED        1      1      3      0      1
  DGKD WILD-TYPE     83     84     82     69     46
D722V5, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            1             83
  CLUS_2            1             84
  CLUS_3            3             82
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGKD MUTATED        0      2      1      3
  DGKD WILD-TYPE     95     72    120     77
D722V6, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            0             95
  CLUS_2            2             72
  CLUS_3            1            120
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DGKD MUTATED        2      1      1      1      0      1
  DGKD WILD-TYPE     50     63     71    103     40     58
D722V7, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            2             50
  CLUS_2            1             63
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DGKD MUTATED        4      1      1
  DGKD WILD-TYPE    213     74     98
D722V8, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            4            213
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DGKD MUTATED        3      2      0
  DGKD WILD-TYPE    118    106     72
D722V9, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            3            118
  CLUS_2            2            106
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGKD MUTATED        1      1      0      1      2
  DGKD WILD-TYPE     87     65     45     54     45
D722V10, multiclass
        clus
vv       DGKD MUTATED DGKD WILD-TYPE
  CLUS_1            1             87
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            1             54
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(723) Variable = THEMIS MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THEMIS MUTATED        0     11      0      0
  THEMIS WILD-TYPE    204    126     47      3
D723V1, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              0              204
  CLUS_2             11              126
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THEMIS MUTATED        1      5      0      1      1
  THEMIS WILD-TYPE     38     91     44     87     79
D723V2, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THEMIS MUTATED        1      3      3      1      2
  THEMIS WILD-TYPE     25     76     70     81     56
D723V3, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THEMIS MUTATED        0      6      3      1
  THEMIS WILD-TYPE    127     45     68     68
D723V4, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              0              127
  CLUS_2              6               45
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THEMIS MUTATED        0      2      5      0      2
  THEMIS WILD-TYPE     84     83     80     69     45
D723V5, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              5               80
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THEMIS MUTATED        2      2      1      4
  THEMIS WILD-TYPE     93     72    120     76
D723V6, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THEMIS MUTATED        4      4      0      2      1      0
  THEMIS WILD-TYPE     48     60     72    102     39     59
D723V7, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              4               48
  CLUS_2              4               60
  CLUS_3              0               72
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THEMIS MUTATED        7      3      1
  THEMIS WILD-TYPE    210     72     98
D723V8, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              7              210
  CLUS_2              3               72
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  THEMIS MUTATED        3      2      3
  THEMIS WILD-TYPE    118    106     69
D723V9, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              3              118
  CLUS_2              2              106
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THEMIS MUTATED        2      1      2      0      3
  THEMIS WILD-TYPE     86     65     43     55     44
D723V10, multiclass
        clus
vv       THEMIS MUTATED THEMIS WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(724) Variable = BMPR2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR2 MUTATED        1     14      4      0
  BMPR2 WILD-TYPE    203    123     43      3
D724V1, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            14             123
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMPR2 MUTATED        3      5      5      0      3
  BMPR2 WILD-TYPE     36     91     39     88     77
D724V2, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             5              91
  CLUS_3             5              39
  CLUS_4             0              88
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMPR2 MUTATED        0      7      6      2      2
  BMPR2 WILD-TYPE     26     72     67     80     56
D724V3, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             7              72
  CLUS_3             6              67
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR2 MUTATED        4      5      6      2
  BMPR2 WILD-TYPE    123     46     65     67
D724V4, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             5              46
  CLUS_3             6              65
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMPR2 MUTATED        0      3      9      3      3
  BMPR2 WILD-TYPE     84     82     76     66     44
D724V5, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             9              76
  CLUS_4             3              66
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR2 MUTATED        7      0      1     10
  BMPR2 WILD-TYPE     88     74    120     70
D724V6, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4            10              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BMPR2 MUTATED        3      8      4      3      1      0
  BMPR2 WILD-TYPE     49     56     68    101     39     59
D724V7, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             8              56
  CLUS_3             4              68
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMPR2 MUTATED       14      4      1
  BMPR2 WILD-TYPE    203     71     98
D724V8, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             4              71
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BMPR2 MUTATED        5      2      6
  BMPR2 WILD-TYPE    116    106     66
D724V9, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             2             106
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMPR2 MUTATED        4      2      2      0      5
  BMPR2 WILD-TYPE     84     64     43     55     42
D724V10, multiclass
        clus
vv       BMPR2 MUTATED BMPR2 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             2              64
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(725) Variable = R3HDM2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  R3HDM2 MUTATED        0      8      0      0
  R3HDM2 WILD-TYPE    204    129     47      3
D725V1, multiclass
        clus
vv       R3HDM2 MUTATED R3HDM2 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              8              129
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  R3HDM2 MUTATED        1      2      1      0      1
  R3HDM2 WILD-TYPE     38     94     43     88     79
D725V2, multiclass
        clus
vv       R3HDM2 MUTATED R3HDM2 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              2               94
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  R3HDM2 MUTATED        0      3      3      1      1
  R3HDM2 WILD-TYPE     26     76     70     81     57
D725V3, multiclass
        clus
vv       R3HDM2 MUTATED R3HDM2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  R3HDM2 MUTATED        1      5      2      0
  R3HDM2 WILD-TYPE    126     46     69     69
D725V4, multiclass
        clus
vv       R3HDM2 MUTATED R3HDM2 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              5               46
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  R3HDM2 MUTATED        0      2      2      2      2
  R3HDM2 WILD-TYPE     84     83     83     67     45
D725V5, multiclass
        clus
vv       R3HDM2 MUTATED R3HDM2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              2               83
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  R3HDM2 MUTATED        3      3      0      2
  R3HDM2 WILD-TYPE     92     71    121     78
D725V6, multiclass
        clus
vv       R3HDM2 MUTATED R3HDM2 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              3               71
  CLUS_3              0              121
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  R3HDM2 MUTATED        0      6      2      1      0      0
  R3HDM2 WILD-TYPE     52     58     70    103     40     59
D725V7, multiclass
        clus
vv       R3HDM2 MUTATED R3HDM2 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              6               58
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  R3HDM2 MUTATED        9      0      0
  R3HDM2 WILD-TYPE    208     75     99
D725V8, multiclass
        clus
vv       R3HDM2 MUTATED R3HDM2 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  R3HDM2 MUTATED        2      0      3
  R3HDM2 WILD-TYPE    119    108     69
D725V9, multiclass
        clus
vv       R3HDM2 MUTATED R3HDM2 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  R3HDM2 MUTATED        1      0      2      0      2
  R3HDM2 WILD-TYPE     87     66     43     55     45
D725V10, multiclass
        clus
vv       R3HDM2 MUTATED R3HDM2 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(726) Variable = BLMH MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BLMH MUTATED        2      2      1      0
  BLMH WILD-TYPE    202    135     46      3
D726V1, multiclass
        clus
vv       BLMH MUTATED BLMH WILD-TYPE
  CLUS_1            2            202
  CLUS_2            2            135
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BLMH MUTATED        0      4      0      1      0
  BLMH WILD-TYPE     39     92     44     87     80
D726V2, multiclass
        clus
vv       BLMH MUTATED BLMH WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            0             44
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BLMH MUTATED        0      3      0      0      1
  BLMH WILD-TYPE     26     76     73     82     57
D726V3, multiclass
        clus
vv       BLMH MUTATED BLMH WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            0             73
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BLMH MUTATED        0      2      2      0
  BLMH WILD-TYPE    127     49     69     69
D726V4, multiclass
        clus
vv       BLMH MUTATED BLMH WILD-TYPE
  CLUS_1            0            127
  CLUS_2            2             49
  CLUS_3            2             69
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BLMH MUTATED        0      1      2      1      1
  BLMH WILD-TYPE     84     84     83     68     46
D726V5, multiclass
        clus
vv       BLMH MUTATED BLMH WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            2             83
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BLMH MUTATED        2      0      1      2
  BLMH WILD-TYPE     93     74    120     78
D726V6, multiclass
        clus
vv       BLMH MUTATED BLMH WILD-TYPE
  CLUS_1            2             93
  CLUS_2            0             74
  CLUS_3            1            120
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BLMH MUTATED        2      0      2      0      0      1
  BLMH WILD-TYPE     50     64     70    104     40     58
D726V7, multiclass
        clus
vv       BLMH MUTATED BLMH WILD-TYPE
  CLUS_1            2             50
  CLUS_2            0             64
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BLMH MUTATED        4      0      1
  BLMH WILD-TYPE    213     75     98
D726V8, multiclass
        clus
vv       BLMH MUTATED BLMH WILD-TYPE
  CLUS_1            4            213
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BLMH MUTATED        3      0      2
  BLMH WILD-TYPE    118    108     70
D726V9, multiclass
        clus
vv       BLMH MUTATED BLMH WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BLMH MUTATED        0      0      0      1      4
  BLMH WILD-TYPE     88     66     45     54     43
D726V10, multiclass
        clus
vv       BLMH MUTATED BLMH WILD-TYPE
  CLUS_1            0             88
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            1             54
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(727) Variable = PLEKHO1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHO1 MUTATED        0      7      0      0
  PLEKHO1 WILD-TYPE    204    130     47      3
D727V1, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               7               130
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHO1 MUTATED        1      2      1      0      1
  PLEKHO1 WILD-TYPE     38     94     43     88     79
D727V2, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               2                94
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHO1 MUTATED        0      2      3      0      2
  PLEKHO1 WILD-TYPE     26     77     70     82     56
D727V3, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               3                70
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHO1 MUTATED        0      4      2      1
  PLEKHO1 WILD-TYPE    127     47     69     68
D727V4, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               4                47
  CLUS_3               2                69
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHO1 MUTATED        0      2      3      0      2
  PLEKHO1 WILD-TYPE     84     83     82     69     45
D727V5, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3               3                82
  CLUS_4               0                69
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHO1 MUTATED        2      2      1      2
  PLEKHO1 WILD-TYPE     93     72    120     78
D727V6, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               2                72
  CLUS_3               1               120
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLEKHO1 MUTATED        2      5      0      0      0      0
  PLEKHO1 WILD-TYPE     50     59     72    104     40     59
D727V7, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               5                59
  CLUS_3               0                72
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHO1 MUTATED        6      1      0
  PLEKHO1 WILD-TYPE    211     74     99
D727V8, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               1                74
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHO1 MUTATED        1      0      4
  PLEKHO1 WILD-TYPE    120    108     68
D727V9, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               1               120
  CLUS_2               0               108
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHO1 MUTATED        2      0      2      0      1
  PLEKHO1 WILD-TYPE     86     66     43     55     46
D727V10, multiclass
        clus
vv       PLEKHO1 MUTATED PLEKHO1 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(728) Variable = INPP5F MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPP5F MUTATED        0     13      2      0
  INPP5F WILD-TYPE    204    124     45      3
D728V1, multiclass
        clus
vv       INPP5F MUTATED INPP5F WILD-TYPE
  CLUS_1              0              204
  CLUS_2             13              124
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INPP5F MUTATED        1      6      2      1      1
  INPP5F WILD-TYPE     38     90     42     87     79
D728V2, multiclass
        clus
vv       INPP5F MUTATED INPP5F WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               90
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INPP5F MUTATED        0      5      3      0      5
  INPP5F WILD-TYPE     26     74     70     82     53
D728V3, multiclass
        clus
vv       INPP5F MUTATED INPP5F WILD-TYPE
  CLUS_1              0               26
  CLUS_2              5               74
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              5               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPP5F MUTATED        1      8      3      1
  INPP5F WILD-TYPE    126     43     68     68
D728V4, multiclass
        clus
vv       INPP5F MUTATED INPP5F WILD-TYPE
  CLUS_1              1              126
  CLUS_2              8               43
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INPP5F MUTATED        0      2      8      1      4
  INPP5F WILD-TYPE     84     83     77     68     43
D728V5, multiclass
        clus
vv       INPP5F MUTATED INPP5F WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              8               77
  CLUS_4              1               68
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INPP5F MUTATED        3      3      1      8
  INPP5F WILD-TYPE     92     71    120     72
D728V6, multiclass
        clus
vv       INPP5F MUTATED INPP5F WILD-TYPE
  CLUS_1              3               92
  CLUS_2              3               71
  CLUS_3              1              120
  CLUS_4              8               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  INPP5F MUTATED        5      9      0      1      0      0
  INPP5F WILD-TYPE     47     55     72    103     40     59
D728V7, multiclass
        clus
vv       INPP5F MUTATED INPP5F WILD-TYPE
  CLUS_1              5               47
  CLUS_2              9               55
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INPP5F MUTATED       13      1      1
  INPP5F WILD-TYPE    204     74     98
D728V8, multiclass
        clus
vv       INPP5F MUTATED INPP5F WILD-TYPE
  CLUS_1             13              204
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INPP5F MUTATED        5      1      5
  INPP5F WILD-TYPE    116    107     67
D728V9, multiclass
        clus
vv       INPP5F MUTATED INPP5F WILD-TYPE
  CLUS_1              5              116
  CLUS_2              1              107
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INPP5F MUTATED        4      0      4      0      3
  INPP5F WILD-TYPE     84     66     41     55     44
D728V10, multiclass
        clus
vv       INPP5F MUTATED INPP5F WILD-TYPE
  CLUS_1              4               84
  CLUS_2              0               66
  CLUS_3              4               41
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(729) Variable = NLRC5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRC5 MUTATED        3     19      1      0
  NLRC5 WILD-TYPE    201    118     46      3
D729V1, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            19             118
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLRC5 MUTATED        1      9      3      0      3
  NLRC5 WILD-TYPE     38     87     41     88     77
D729V2, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             9              87
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLRC5 MUTATED        2     10      4      2      3
  NLRC5 WILD-TYPE     24     69     69     80     55
D729V3, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             2              24
  CLUS_2            10              69
  CLUS_3             4              69
  CLUS_4             2              80
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRC5 MUTATED        4      8      6      3
  NLRC5 WILD-TYPE    123     43     65     66
D729V4, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             8              43
  CLUS_3             6              65
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLRC5 MUTATED        3      3     11      1      3
  NLRC5 WILD-TYPE     81     82     74     68     44
D729V5, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             3              82
  CLUS_3            11              74
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRC5 MUTATED        6      2      4      9
  NLRC5 WILD-TYPE     89     72    117     71
D729V6, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             2              72
  CLUS_3             4             117
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NLRC5 MUTATED        3      9      6      3      1      1
  NLRC5 WILD-TYPE     49     55     66    101     39     58
D729V7, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             9              55
  CLUS_3             6              66
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRC5 MUTATED       18      3      2
  NLRC5 WILD-TYPE    199     72     97
D729V8, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1            18             199
  CLUS_2             3              72
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRC5 MUTATED        6      2      7
  NLRC5 WILD-TYPE    115    106     65
D729V9, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             2             106
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLRC5 MUTATED        8      1      2      0      4
  NLRC5 WILD-TYPE     80     65     43     55     43
D729V10, multiclass
        clus
vv       NLRC5 MUTATED NLRC5 WILD-TYPE
  CLUS_1             8              80
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(730) Variable = MYCT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYCT1 MUTATED        5      2      1      0
  MYCT1 WILD-TYPE    199    135     46      3
D730V1, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             5             199
  CLUS_2             2             135
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYCT1 MUTATED        0      4      0      2      0
  MYCT1 WILD-TYPE     39     92     44     86     80
D730V2, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             2              86
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYCT1 MUTATED        0      1      4      0      1
  MYCT1 WILD-TYPE     26     78     69     82     57
D730V3, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYCT1 MUTATED        3      3      0      0
  MYCT1 WILD-TYPE    124     48     71     69
D730V4, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             3              48
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYCT1 MUTATED        2      0      3      1      1
  MYCT1 WILD-TYPE     82     85     82     68     46
D730V5, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYCT1 MUTATED        2      0      2      3
  MYCT1 WILD-TYPE     93     74    119     77
D730V6, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYCT1 MUTATED        2      3      0      0      1      2
  MYCT1 WILD-TYPE     50     61     72    104     39     57
D730V7, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             0              72
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYCT1 MUTATED        5      0      3
  MYCT1 WILD-TYPE    212     75     96
D730V8, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             0              75
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYCT1 MUTATED        5      0      1
  MYCT1 WILD-TYPE    116    108     71
D730V9, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             0             108
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYCT1 MUTATED        1      0      1      3      1
  MYCT1 WILD-TYPE     87     66     44     52     46
D730V10, multiclass
        clus
vv       MYCT1 MUTATED MYCT1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             3              52
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(731) Variable = CDC6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC6 MUTATED        3      3      2      0
  CDC6 WILD-TYPE    201    134     45      3
D731V1, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            3            201
  CLUS_2            3            134
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC6 MUTATED        1      1      1      2      2
  CDC6 WILD-TYPE     38     95     43     86     78
D731V2, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            1             95
  CLUS_3            1             43
  CLUS_4            2             86
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC6 MUTATED        0      4      1      0      3
  CDC6 WILD-TYPE     26     75     72     82     55
D731V3, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC6 MUTATED        3      1      3      1
  CDC6 WILD-TYPE    124     50     68     68
D731V4, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            1             50
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC6 MUTATED        1      3      2      1      0
  CDC6 WILD-TYPE     83     82     83     68     47
D731V5, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            3             82
  CLUS_3            2             83
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDC6 MUTATED        1      3      0      3
  CDC6 WILD-TYPE     94     71    121     77
D731V6, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            3             71
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDC6 MUTATED        0      1      0      5      0      2
  CDC6 WILD-TYPE     52     63     72     99     40     57
D731V7, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            1             63
  CLUS_3            0             72
  CLUS_4            5             99
  CLUS_5            0             40
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDC6 MUTATED        4      1      3
  CDC6 WILD-TYPE    213     74     96
D731V8, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            4            213
  CLUS_2            1             74
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDC6 MUTATED        0      5      1
  CDC6 WILD-TYPE    121    103     71
D731V9, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            0            121
  CLUS_2            5            103
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDC6 MUTATED        2      1      0      3      0
  CDC6 WILD-TYPE     86     65     45     52     47
D731V10, multiclass
        clus
vv       CDC6 MUTATED CDC6 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            3             52
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(732) Variable = CDX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDX2 MUTATED        0      3      1      0
  CDX2 WILD-TYPE    204    134     46      3
D732V1, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            3            134
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDX2 MUTATED        1      1      1      0      0
  CDX2 WILD-TYPE     38     95     43     88     80
D732V2, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            1             95
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDX2 MUTATED        0      1      2      1      0
  CDX2 WILD-TYPE     26     78     71     81     58
D732V3, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDX2 MUTATED        1      2      0      1
  CDX2 WILD-TYPE    126     49     71     68
D732V4, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            2             49
  CLUS_3            0             71
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDX2 MUTATED        0      1      2      1      0
  CDX2 WILD-TYPE     84     84     83     68     47
D732V5, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            2             83
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDX2 MUTATED        2      2      0      0
  CDX2 WILD-TYPE     93     72    121     80
D732V6, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            0             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDX2 MUTATED        0      3      1      0      0      0
  CDX2 WILD-TYPE     52     61     71    104     40     59
D732V7, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            3             61
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDX2 MUTATED        4      0      0
  CDX2 WILD-TYPE    213     75     99
D732V8, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            4            213
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CDX2 MUTATED        1      0      2
  CDX2 WILD-TYPE    120    108     70
D732V9, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            1            120
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDX2 MUTATED        1      0      2      0      0
  CDX2 WILD-TYPE     87     66     43     55     47
D732V10, multiclass
        clus
vv       CDX2 MUTATED CDX2 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(733) Variable = EFHA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHA1 MUTATED        2     12      0      0
  EFHA1 WILD-TYPE    202    125     47      3
D733V1, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            12             125
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHA1 MUTATED        0      9      1      0      2
  EFHA1 WILD-TYPE     39     87     43     88     78
D733V2, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             9              87
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHA1 MUTATED        1      5      3      0      0
  EFHA1 WILD-TYPE     25     74     70     82     58
D733V3, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHA1 MUTATED        2      5      2      0
  EFHA1 WILD-TYPE    125     46     69     69
D733V4, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHA1 MUTATED        0      2      9      1      1
  EFHA1 WILD-TYPE     84     83     76     68     46
D733V5, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             9              76
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHA1 MUTATED        5      1      1      6
  EFHA1 WILD-TYPE     90     73    120     74
D733V6, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EFHA1 MUTATED        2      3      7      1      1      0
  EFHA1 WILD-TYPE     50     61     65    103     39     59
D733V7, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             7              65
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHA1 MUTATED       11      1      2
  EFHA1 WILD-TYPE    206     74     97
D733V8, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHA1 MUTATED        4      2      5
  EFHA1 WILD-TYPE    117    106     67
D733V9, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             2             106
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHA1 MUTATED        4      1      1      0      5
  EFHA1 WILD-TYPE     84     65     44     55     42
D733V10, multiclass
        clus
vv       EFHA1 MUTATED EFHA1 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(734) Variable = GPR124 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR124 MUTATED        2     13      2      0
  GPR124 WILD-TYPE    202    124     45      3
D734V1, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              2              202
  CLUS_2             13              124
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR124 MUTATED        2      8      1      0      3
  GPR124 WILD-TYPE     37     88     43     88     77
D734V2, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              8               88
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR124 MUTATED        1      5      5      2      3
  GPR124 WILD-TYPE     25     74     68     80     55
D734V3, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              5               74
  CLUS_3              5               68
  CLUS_4              2               80
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR124 MUTATED        5      7      3      1
  GPR124 WILD-TYPE    122     44     68     68
D734V4, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              5              122
  CLUS_2              7               44
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR124 MUTATED        0      5      6      2      3
  GPR124 WILD-TYPE     84     80     79     67     44
D734V5, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              5               80
  CLUS_3              6               79
  CLUS_4              2               67
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR124 MUTATED        5      1      4      6
  GPR124 WILD-TYPE     90     73    117     74
D734V6, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              5               90
  CLUS_2              1               73
  CLUS_3              4              117
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR124 MUTATED        2      6      5      3      1      0
  GPR124 WILD-TYPE     50     58     67    101     39     59
D734V7, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              6               58
  CLUS_3              5               67
  CLUS_4              3              101
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR124 MUTATED       12      2      3
  GPR124 WILD-TYPE    205     73     96
D734V8, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1             12              205
  CLUS_2              2               73
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR124 MUTATED        4      2      7
  GPR124 WILD-TYPE    117    106     65
D734V9, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              2              106
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR124 MUTATED        5      0      3      1      4
  GPR124 WILD-TYPE     83     66     42     54     43
D734V10, multiclass
        clus
vv       GPR124 MUTATED GPR124 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              1               54
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(735) Variable = TEX15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX15 MUTATED        8     17      2      0
  TEX15 WILD-TYPE    196    120     45      3
D735V1, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1             8             196
  CLUS_2            17             120
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEX15 MUTATED        4     12      2      2      0
  TEX15 WILD-TYPE     35     84     42     86     80
D735V2, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1             4              35
  CLUS_2            12              84
  CLUS_3             2              42
  CLUS_4             2              86
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEX15 MUTATED        1      7      6      3      5
  TEX15 WILD-TYPE     25     72     67     79     53
D735V3, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             7              72
  CLUS_3             6              67
  CLUS_4             3              79
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX15 MUTATED        8      7      6      1
  TEX15 WILD-TYPE    119     44     65     68
D735V4, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1             8             119
  CLUS_2             7              44
  CLUS_3             6              65
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEX15 MUTATED        3      6      9      5      3
  TEX15 WILD-TYPE     81     79     76     64     44
D735V5, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             6              79
  CLUS_3             9              76
  CLUS_4             5              64
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TEX15 MUTATED       12      4      2      8
  TEX15 WILD-TYPE     83     70    119     72
D735V6, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1            12              83
  CLUS_2             4              70
  CLUS_3             2             119
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TEX15 MUTATED        5     10      5      2      3      2
  TEX15 WILD-TYPE     47     54     67    102     37     57
D735V7, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1             5              47
  CLUS_2            10              54
  CLUS_3             5              67
  CLUS_4             2             102
  CLUS_5             3              37
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEX15 MUTATED       22      2      3
  TEX15 WILD-TYPE    195     73     96
D735V8, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1            22             195
  CLUS_2             2              73
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TEX15 MUTATED        8      4      7
  TEX15 WILD-TYPE    113    104     65
D735V9, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1             8             113
  CLUS_2             4             104
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TEX15 MUTATED        6      1      3      1      8
  TEX15 WILD-TYPE     82     65     42     54     39
D735V10, multiclass
        clus
vv       TEX15 MUTATED TEX15 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             8              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(736) Variable = CD33 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD33 MUTATED        5      4      0      0
  CD33 WILD-TYPE    199    133     47      3
D736V1, multiclass
        clus
vv       CD33 MUTATED CD33 WILD-TYPE
  CLUS_1            5            199
  CLUS_2            4            133
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD33 MUTATED        0      2      1      5      0
  CD33 WILD-TYPE     39     94     43     83     80
D736V2, multiclass
        clus
vv       CD33 MUTATED CD33 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            2             94
  CLUS_3            1             43
  CLUS_4            5             83
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD33 MUTATED        0      3      5      0      0
  CD33 WILD-TYPE     26     76     68     82     58
D736V3, multiclass
        clus
vv       CD33 MUTATED CD33 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            5             68
  CLUS_4            0             82
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD33 MUTATED        2      4      1      1
  CD33 WILD-TYPE    125     47     70     68
D736V4, multiclass
        clus
vv       CD33 MUTATED CD33 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            4             47
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD33 MUTATED        2      1      3      2      1
  CD33 WILD-TYPE     82     84     82     67     46
D736V5, multiclass
        clus
vv       CD33 MUTATED CD33 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            1             84
  CLUS_3            3             82
  CLUS_4            2             67
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD33 MUTATED        3      1      3      2
  CD33 WILD-TYPE     92     73    118     78
D736V6, multiclass
        clus
vv       CD33 MUTATED CD33 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            3            118
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD33 MUTATED        0      2      1      2      1      2
  CD33 WILD-TYPE     52     62     71    102     39     57
D736V7, multiclass
        clus
vv       CD33 MUTATED CD33 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            2             62
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            1             39
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD33 MUTATED        4      1      3
  CD33 WILD-TYPE    213     74     96
D736V8, multiclass
        clus
vv       CD33 MUTATED CD33 WILD-TYPE
  CLUS_1            4            213
  CLUS_2            1             74
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD33 MUTATED        3      2      1
  CD33 WILD-TYPE    118    106     71
D736V9, multiclass
        clus
vv       CD33 MUTATED CD33 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            2            106
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD33 MUTATED        1      1      1      2      1
  CD33 WILD-TYPE     87     65     44     53     46
D736V10, multiclass
        clus
vv       CD33 MUTATED CD33 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            2             53
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(737) Variable = GIPC3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIPC3 MUTATED        0      6      0      0
  GIPC3 WILD-TYPE    204    131     47      3
D737V1, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             6             131
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIPC3 MUTATED        0      6      1      0      0
  GIPC3 WILD-TYPE     39     90     43     88     80
D737V2, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIPC3 MUTATED        0      0      4      0      0
  GIPC3 WILD-TYPE     26     79     69     82     58
D737V3, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              79
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIPC3 MUTATED        1      2      0      1
  GIPC3 WILD-TYPE    126     49     71     68
D737V4, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             2              49
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIPC3 MUTATED        0      2      4      0      1
  GIPC3 WILD-TYPE     84     83     81     69     46
D737V5, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             4              81
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIPC3 MUTATED        0      2      0      5
  GIPC3 WILD-TYPE     95     72    121     75
D737V6, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GIPC3 MUTATED        2      1      2      1      1      0
  GIPC3 WILD-TYPE     50     63     70    103     39     59
D737V7, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             1              63
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GIPC3 MUTATED        4      1      2
  GIPC3 WILD-TYPE    213     74     97
D737V8, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GIPC3 MUTATED        5      1      0
  GIPC3 WILD-TYPE    116    107     72
D737V9, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             1             107
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIPC3 MUTATED        4      1      0      0      1
  GIPC3 WILD-TYPE     84     65     45     55     46
D737V10, multiclass
        clus
vv       GIPC3 MUTATED GIPC3 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(738) Variable = PRAMEF14 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRAMEF14 MUTATED        1      4      0      0
  PRAMEF14 WILD-TYPE    203    133     47      3
D738V1, multiclass
        clus
vv       PRAMEF14 MUTATED PRAMEF14 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                4                133
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRAMEF14 MUTATED        1      4      0      0      0
  PRAMEF14 WILD-TYPE     38     92     44     88     80
D738V2, multiclass
        clus
vv       PRAMEF14 MUTATED PRAMEF14 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                4                 92
  CLUS_3                0                 44
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRAMEF14 MUTATED        0      1      3      0      1
  PRAMEF14 WILD-TYPE     26     78     70     82     57
D738V3, multiclass
        clus
vv       PRAMEF14 MUTATED PRAMEF14 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                1                 78
  CLUS_3                3                 70
  CLUS_4                0                 82
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRAMEF14 MUTATED        1      3      0      1
  PRAMEF14 WILD-TYPE    126     48     71     68
D738V4, multiclass
        clus
vv       PRAMEF14 MUTATED PRAMEF14 WILD-TYPE
  CLUS_1                1                126
  CLUS_2                3                 48
  CLUS_3                0                 71
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRAMEF14 MUTATED        1      2      0      0      1
  PRAMEF14 WILD-TYPE     83     83     85     69     46
D738V5, multiclass
        clus
vv       PRAMEF14 MUTATED PRAMEF14 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 83
  CLUS_3                0                 85
  CLUS_4                0                 69
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRAMEF14 MUTATED        0      2      1      1
  PRAMEF14 WILD-TYPE     95     72    120     79
D738V6, multiclass
        clus
vv       PRAMEF14 MUTATED PRAMEF14 WILD-TYPE
  CLUS_1                0                 95
  CLUS_2                2                 72
  CLUS_3                1                120
  CLUS_4                1                 79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRAMEF14 MUTATED        1      0      1      3      0      0
  PRAMEF14 WILD-TYPE     51     64     71    101     40     59
D738V7, multiclass
        clus
vv       PRAMEF14 MUTATED PRAMEF14 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                0                 64
  CLUS_3                1                 71
  CLUS_4                3                101
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PRAMEF14 MUTATED        3      2      0
  PRAMEF14 WILD-TYPE    214     73     99
D738V8, multiclass
        clus
vv       PRAMEF14 MUTATED PRAMEF14 WILD-TYPE
  CLUS_1                3                214
  CLUS_2                2                 73
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PRAMEF14 MUTATED        0      1      3
  PRAMEF14 WILD-TYPE    121    107     69
D738V9, multiclass
        clus
vv       PRAMEF14 MUTATED PRAMEF14 WILD-TYPE
  CLUS_1                0                121
  CLUS_2                1                107
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRAMEF14 MUTATED        1      1      0      0      2
  PRAMEF14 WILD-TYPE     87     65     45     55     45
D738V10, multiclass
        clus
vv       PRAMEF14 MUTATED PRAMEF14 WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                1                 65
  CLUS_3                0                 45
  CLUS_4                0                 55
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(739) Variable = PYGO2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PYGO2 MUTATED        1      6      1      0
  PYGO2 WILD-TYPE    203    131     46      3
D739V1, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             6             131
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PYGO2 MUTATED        1      6      1      0      0
  PYGO2 WILD-TYPE     38     90     43     88     80
D739V2, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PYGO2 MUTATED        0      2      1      1      1
  PYGO2 WILD-TYPE     26     77     72     81     57
D739V3, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PYGO2 MUTATED        1      1      2      1
  PYGO2 WILD-TYPE    126     50     69     68
D739V4, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             1              50
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PYGO2 MUTATED        0      1      2      2      3
  PYGO2 WILD-TYPE     84     84     83     67     44
D739V5, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             2              83
  CLUS_4             2              67
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PYGO2 MUTATED        2      1      0      5
  PYGO2 WILD-TYPE     93     73    121     75
D739V6, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PYGO2 MUTATED        4      2      1      0      1      0
  PYGO2 WILD-TYPE     48     62     71    104     39     59
D739V7, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PYGO2 MUTATED        7      1      0
  PYGO2 WILD-TYPE    210     74     99
D739V8, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PYGO2 MUTATED        4      0      3
  PYGO2 WILD-TYPE    117    108     69
D739V9, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             0             108
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PYGO2 MUTATED        2      0      1      0      4
  PYGO2 WILD-TYPE     86     66     44     55     43
D739V10, multiclass
        clus
vv       PYGO2 MUTATED PYGO2 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(740) Variable = AVEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AVEN MUTATED        2      4      1      0
  AVEN WILD-TYPE    202    133     46      3
D740V1, multiclass
        clus
vv       AVEN MUTATED AVEN WILD-TYPE
  CLUS_1            2            202
  CLUS_2            4            133
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AVEN MUTATED        0      4      1      0      0
  AVEN WILD-TYPE     39     92     43     88     80
D740V2, multiclass
        clus
vv       AVEN MUTATED AVEN WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AVEN MUTATED        0      2      3      0      0
  AVEN WILD-TYPE     26     77     70     82     58
D740V3, multiclass
        clus
vv       AVEN MUTATED AVEN WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AVEN MUTATED        2      2      1      0
  AVEN WILD-TYPE    125     49     70     69
D740V4, multiclass
        clus
vv       AVEN MUTATED AVEN WILD-TYPE
  CLUS_1            2            125
  CLUS_2            2             49
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AVEN MUTATED        0      0      6      0      1
  AVEN WILD-TYPE     84     85     79     69     46
D740V5, multiclass
        clus
vv       AVEN MUTATED AVEN WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            6             79
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AVEN MUTATED        1      1      1      4
  AVEN WILD-TYPE     94     73    120     76
D740V6, multiclass
        clus
vv       AVEN MUTATED AVEN WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AVEN MUTATED        3      2      2      0      0      0
  AVEN WILD-TYPE     49     62     70    104     40     59
D740V7, multiclass
        clus
vv       AVEN MUTATED AVEN WILD-TYPE
  CLUS_1            3             49
  CLUS_2            2             62
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AVEN MUTATED        6      0      1
  AVEN WILD-TYPE    211     75     98
D740V8, multiclass
        clus
vv       AVEN MUTATED AVEN WILD-TYPE
  CLUS_1            6            211
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AVEN MUTATED        3      0      0
  AVEN WILD-TYPE    118    108     72
D740V9, multiclass
        clus
vv       AVEN MUTATED AVEN WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AVEN MUTATED        2      0      0      0      1
  AVEN WILD-TYPE     86     66     45     55     46
D740V10, multiclass
        clus
vv       AVEN MUTATED AVEN WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(741) Variable = BAT4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAT4 MUTATED        0      3      2      0
  BAT4 WILD-TYPE    204    134     45      3
D741V1, multiclass
        clus
vv       BAT4 MUTATED BAT4 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            3            134
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAT4 MUTATED        1      3      1      0      0
  BAT4 WILD-TYPE     38     93     43     88     80
D741V2, multiclass
        clus
vv       BAT4 MUTATED BAT4 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            3             93
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAT4 MUTATED        0      0      1      1      2
  BAT4 WILD-TYPE     26     79     72     81     56
D741V3, multiclass
        clus
vv       BAT4 MUTATED BAT4 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             79
  CLUS_3            1             72
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAT4 MUTATED        0      2      0      2
  BAT4 WILD-TYPE    127     49     71     67
D741V4, multiclass
        clus
vv       BAT4 MUTATED BAT4 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            2             49
  CLUS_3            0             71
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAT4 MUTATED        0      2      2      0      0
  BAT4 WILD-TYPE     84     83     83     69     47
D741V5, multiclass
        clus
vv       BAT4 MUTATED BAT4 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            2             83
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAT4 MUTATED        0      2      0      2
  BAT4 WILD-TYPE     95     72    121     78
D741V6, multiclass
        clus
vv       BAT4 MUTATED BAT4 WILD-TYPE
  CLUS_1            0             95
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BAT4 MUTATED        1      1      2      1      0      0
  BAT4 WILD-TYPE     51     63     70    103     40     59
D741V7, multiclass
        clus
vv       BAT4 MUTATED BAT4 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            1             63
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAT4 MUTATED        3      2      0
  BAT4 WILD-TYPE    214     73     99
D741V8, multiclass
        clus
vv       BAT4 MUTATED BAT4 WILD-TYPE
  CLUS_1            3            214
  CLUS_2            2             73
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAT4 MUTATED        2      1      2
  BAT4 WILD-TYPE    119    107     70
D741V9, multiclass
        clus
vv       BAT4 MUTATED BAT4 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAT4 MUTATED        3      1      0      0      1
  BAT4 WILD-TYPE     85     65     45     55     46
D741V10, multiclass
        clus
vv       BAT4 MUTATED BAT4 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(742) Variable = GPR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR1 MUTATED        1      4      1      0
  GPR1 WILD-TYPE    203    133     46      3
D742V1, multiclass
        clus
vv       GPR1 MUTATED GPR1 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            4            133
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR1 MUTATED        1      5      0      0      0
  GPR1 WILD-TYPE     38     91     44     88     80
D742V2, multiclass
        clus
vv       GPR1 MUTATED GPR1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            5             91
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR1 MUTATED        0      0      1      1      2
  GPR1 WILD-TYPE     26     79     72     81     56
D742V3, multiclass
        clus
vv       GPR1 MUTATED GPR1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             79
  CLUS_3            1             72
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR1 MUTATED        0      3      0      1
  GPR1 WILD-TYPE    127     48     71     68
D742V4, multiclass
        clus
vv       GPR1 MUTATED GPR1 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            3             48
  CLUS_3            0             71
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR1 MUTATED        0      1      5      0      0
  GPR1 WILD-TYPE     84     84     80     69     47
D742V5, multiclass
        clus
vv       GPR1 MUTATED GPR1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            5             80
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR1 MUTATED        1      1      0      4
  GPR1 WILD-TYPE     94     73    121     76
D742V6, multiclass
        clus
vv       GPR1 MUTATED GPR1 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR1 MUTATED        2      0      2      0      2      0
  GPR1 WILD-TYPE     50     64     70    104     38     59
D742V7, multiclass
        clus
vv       GPR1 MUTATED GPR1 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            0             64
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPR1 MUTATED        4      1      1
  GPR1 WILD-TYPE    213     74     98
D742V8, multiclass
        clus
vv       GPR1 MUTATED GPR1 WILD-TYPE
  CLUS_1            4            213
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPR1 MUTATED        2      1      2
  GPR1 WILD-TYPE    119    107     70
D742V9, multiclass
        clus
vv       GPR1 MUTATED GPR1 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR1 MUTATED        4      0      0      0      1
  GPR1 WILD-TYPE     84     66     45     55     46
D742V10, multiclass
        clus
vv       GPR1 MUTATED GPR1 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(743) Variable = KCTD9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD9 MUTATED        1      6      4      0
  KCTD9 WILD-TYPE    203    131     43      3
D743V1, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             6             131
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD9 MUTATED        3      4      0      0      1
  KCTD9 WILD-TYPE     36     92     44     88     79
D743V2, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD9 MUTATED        1      3      2      2      2
  KCTD9 WILD-TYPE     25     76     71     80     56
D743V3, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             2              71
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD9 MUTATED        3      3      2      2
  KCTD9 WILD-TYPE    124     48     69     67
D743V4, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             3              48
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD9 MUTATED        0      2      2      4      1
  KCTD9 WILD-TYPE     84     83     83     65     46
D743V5, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             2              83
  CLUS_4             4              65
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCTD9 MUTATED        6      2      1      0
  KCTD9 WILD-TYPE     89     72    120     80
D743V6, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             0              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCTD9 MUTATED        3      5      1      1      1      0
  KCTD9 WILD-TYPE     49     59     71    103     39     59
D743V7, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             5              59
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD9 MUTATED        9      2      0
  KCTD9 WILD-TYPE    208     73     99
D743V8, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             2              73
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCTD9 MUTATED        6      0      2
  KCTD9 WILD-TYPE    115    108     70
D743V9, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCTD9 MUTATED        3      0      2      0      3
  KCTD9 WILD-TYPE     85     66     43     55     44
D743V10, multiclass
        clus
vv       KCTD9 MUTATED KCTD9 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(744) Variable = ZNF514 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF514 MUTATED        1      6      2      0
  ZNF514 WILD-TYPE    203    131     45      3
D744V1, multiclass
        clus
vv       ZNF514 MUTATED ZNF514 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              6              131
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF514 MUTATED        2      3      0      0      0
  ZNF514 WILD-TYPE     37     93     44     88     80
D744V2, multiclass
        clus
vv       ZNF514 MUTATED ZNF514 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              3               93
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF514 MUTATED        1      4      1      1      2
  ZNF514 WILD-TYPE     25     75     72     81     56
D744V3, multiclass
        clus
vv       ZNF514 MUTATED ZNF514 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              4               75
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF514 MUTATED        1      6      1      1
  ZNF514 WILD-TYPE    126     45     70     68
D744V4, multiclass
        clus
vv       ZNF514 MUTATED ZNF514 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              6               45
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF514 MUTATED        1      2      3      1      1
  ZNF514 WILD-TYPE     83     83     82     68     46
D744V5, multiclass
        clus
vv       ZNF514 MUTATED ZNF514 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              3               82
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF514 MUTATED        2      2      1      3
  ZNF514 WILD-TYPE     93     72    120     77
D744V6, multiclass
        clus
vv       ZNF514 MUTATED ZNF514 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF514 MUTATED        1      5      1      1      1      0
  ZNF514 WILD-TYPE     51     59     71    103     39     59
D744V7, multiclass
        clus
vv       ZNF514 MUTATED ZNF514 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              5               59
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF514 MUTATED        8      1      0
  ZNF514 WILD-TYPE    209     74     99
D744V8, multiclass
        clus
vv       ZNF514 MUTATED ZNF514 WILD-TYPE
  CLUS_1              8              209
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF514 MUTATED        2      0      3
  ZNF514 WILD-TYPE    119    108     69
D744V9, multiclass
        clus
vv       ZNF514 MUTATED ZNF514 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF514 MUTATED        2      0      2      0      1
  ZNF514 WILD-TYPE     86     66     43     55     46
D744V10, multiclass
        clus
vv       ZNF514 MUTATED ZNF514 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(745) Variable = AFP MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFP MUTATED        0      3      1      0
  AFP WILD-TYPE    204    134     46      3
D745V1, multiclass
        clus
vv       AFP MUTATED AFP WILD-TYPE
  CLUS_1           0           204
  CLUS_2           3           134
  CLUS_3           1            46
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFP MUTATED        0      1      1      0      1
  AFP WILD-TYPE     39     95     43     88     79
D745V2, multiclass
        clus
vv       AFP MUTATED AFP WILD-TYPE
  CLUS_1           0            39
  CLUS_2           1            95
  CLUS_3           1            43
  CLUS_4           0            88
  CLUS_5           1            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFP MUTATED        0      2      1      0      0
  AFP WILD-TYPE     26     77     72     82     58
D745V3, multiclass
        clus
vv       AFP MUTATED AFP WILD-TYPE
  CLUS_1           0            26
  CLUS_2           2            77
  CLUS_3           1            72
  CLUS_4           0            82
  CLUS_5           0            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFP MUTATED        1      1      1      0
  AFP WILD-TYPE    126     50     70     69
D745V4, multiclass
        clus
vv       AFP MUTATED AFP WILD-TYPE
  CLUS_1           1           126
  CLUS_2           1            50
  CLUS_3           1            70
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFP MUTATED        1      2      0      0      0
  AFP WILD-TYPE     83     83     85     69     47
D745V5, multiclass
        clus
vv       AFP MUTATED AFP WILD-TYPE
  CLUS_1           1            83
  CLUS_2           2            83
  CLUS_3           0            85
  CLUS_4           0            69
  CLUS_5           0            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AFP MUTATED        0      1      1      1
  AFP WILD-TYPE     95     73    120     79
D745V6, multiclass
        clus
vv       AFP MUTATED AFP WILD-TYPE
  CLUS_1           0            95
  CLUS_2           1            73
  CLUS_3           1           120
  CLUS_4           1            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AFP MUTATED        0      1      1      2      0      0
  AFP WILD-TYPE     52     63     71    102     40     59
D745V7, multiclass
        clus
vv       AFP MUTATED AFP WILD-TYPE
  CLUS_1           0            52
  CLUS_2           1            63
  CLUS_3           1            71
  CLUS_4           2           102
  CLUS_5           0            40
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AFP MUTATED        2      1      1
  AFP WILD-TYPE    215     74     98
D745V8, multiclass
        clus
vv       AFP MUTATED AFP WILD-TYPE
  CLUS_1           2           215
  CLUS_2           1            74
  CLUS_3           1            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  AFP MUTATED        1      2      0
  AFP WILD-TYPE    120    106     72
D745V9, multiclass
        clus
vv       AFP MUTATED AFP WILD-TYPE
  CLUS_1           1           120
  CLUS_2           2           106
  CLUS_3           0            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AFP MUTATED        1      1      0      1      0
  AFP WILD-TYPE     87     65     45     54     47
D745V10, multiclass
        clus
vv       AFP MUTATED AFP WILD-TYPE
  CLUS_1           1            87
  CLUS_2           1            65
  CLUS_3           0            45
  CLUS_4           1            54
  CLUS_5           0            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(746) Variable = TRIOBP MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIOBP MUTATED        5     18      6      0
  TRIOBP WILD-TYPE    199    119     41      3
D746V1, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              5              199
  CLUS_2             18              119
  CLUS_3              6               41
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIOBP MUTATED        2     14      4      5      2
  TRIOBP WILD-TYPE     37     82     40     83     78
D746V2, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              2               37
  CLUS_2             14               82
  CLUS_3              4               40
  CLUS_4              5               83
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIOBP MUTATED        1      4      4      5      8
  TRIOBP WILD-TYPE     25     75     69     77     50
D746V3, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              1               25
  CLUS_2              4               75
  CLUS_3              4               69
  CLUS_4              5               77
  CLUS_5              8               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIOBP MUTATED        4      9      4      5
  TRIOBP WILD-TYPE    123     42     67     64
D746V4, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              4              123
  CLUS_2              9               42
  CLUS_3              4               67
  CLUS_4              5               64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIOBP MUTATED        4      6     11      3      4
  TRIOBP WILD-TYPE     80     79     74     66     43
D746V5, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              4               80
  CLUS_2              6               79
  CLUS_3             11               74
  CLUS_4              3               66
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIOBP MUTATED        6      5      5     12
  TRIOBP WILD-TYPE     89     69    116     68
D746V6, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              6               89
  CLUS_2              5               69
  CLUS_3              5              116
  CLUS_4             12               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIOBP MUTATED        7     10      2      4      3      4
  TRIOBP WILD-TYPE     45     54     70    100     37     55
D746V7, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              7               45
  CLUS_2             10               54
  CLUS_3              2               70
  CLUS_4              4              100
  CLUS_5              3               37
  CLUS_6              4               55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIOBP MUTATED       20      5      5
  TRIOBP WILD-TYPE    197     70     94
D746V8, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1             20              197
  CLUS_2              5               70
  CLUS_3              5               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIOBP MUTATED       10      3     11
  TRIOBP WILD-TYPE    111    105     61
D746V9, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1             10              111
  CLUS_2              3              105
  CLUS_3             11               61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIOBP MUTATED        4      2      6      2     10
  TRIOBP WILD-TYPE     84     64     39     53     37
D746V10, multiclass
        clus
vv       TRIOBP MUTATED TRIOBP WILD-TYPE
  CLUS_1              4               84
  CLUS_2              2               64
  CLUS_3              6               39
  CLUS_4              2               53
  CLUS_5             10               37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(747) Variable = CCAR1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCAR1 MUTATED        6     12      1      0
  CCAR1 WILD-TYPE    198    125     46      3
D747V1, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             6             198
  CLUS_2            12             125
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCAR1 MUTATED        3      8      2      2      3
  CCAR1 WILD-TYPE     36     88     42     86     77
D747V2, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             8              88
  CLUS_3             2              42
  CLUS_4             2              86
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCAR1 MUTATED        1      5      3      1      6
  CCAR1 WILD-TYPE     25     74     70     81     52
D747V3, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCAR1 MUTATED        6      6      1      3
  CCAR1 WILD-TYPE    121     45     70     66
D747V4, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             6             121
  CLUS_2             6              45
  CLUS_3             1              70
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCAR1 MUTATED        1      2      9      4      3
  CCAR1 WILD-TYPE     83     83     76     65     44
D747V5, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             9              76
  CLUS_4             4              65
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCAR1 MUTATED        5      2      4      8
  CCAR1 WILD-TYPE     90     72    117     72
D747V6, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             2              72
  CLUS_3             4             117
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCAR1 MUTATED        6      3      4      4      1      1
  CCAR1 WILD-TYPE     46     61     68    100     39     58
D747V7, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             3              61
  CLUS_3             4              68
  CLUS_4             4             100
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCAR1 MUTATED       14      2      3
  CCAR1 WILD-TYPE    203     73     96
D747V8, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             2              73
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCAR1 MUTATED        8      4      3
  CCAR1 WILD-TYPE    113    104     69
D747V9, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             8             113
  CLUS_2             4             104
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCAR1 MUTATED        7      0      2      3      3
  CCAR1 WILD-TYPE     81     66     43     52     44
D747V10, multiclass
        clus
vv       CCAR1 MUTATED CCAR1 WILD-TYPE
  CLUS_1             7              81
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             3              52
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(748) Variable = TMEM127 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM127 MUTATED        0      4      1      0
  TMEM127 WILD-TYPE    204    133     46      3
D748V1, multiclass
        clus
vv       TMEM127 MUTATED TMEM127 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               4               133
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM127 MUTATED        0      3      1      0      1
  TMEM127 WILD-TYPE     39     93     43     88     79
D748V2, multiclass
        clus
vv       TMEM127 MUTATED TMEM127 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM127 MUTATED        0      0      2      0      2
  TMEM127 WILD-TYPE     26     79     71     82     56
D748V3, multiclass
        clus
vv       TMEM127 MUTATED TMEM127 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                79
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM127 MUTATED        1      3      0      0
  TMEM127 WILD-TYPE    126     48     71     69
D748V4, multiclass
        clus
vv       TMEM127 MUTATED TMEM127 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               3                48
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM127 MUTATED        0      1      2      1      1
  TMEM127 WILD-TYPE     84     84     83     68     46
D748V5, multiclass
        clus
vv       TMEM127 MUTATED TMEM127 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               2                83
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM127 MUTATED        2      0      1      2
  TMEM127 WILD-TYPE     93     74    120     78
D748V6, multiclass
        clus
vv       TMEM127 MUTATED TMEM127 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               0                74
  CLUS_3               1               120
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM127 MUTATED        1      2      2      0      0      0
  TMEM127 WILD-TYPE     51     62     70    104     40     59
D748V7, multiclass
        clus
vv       TMEM127 MUTATED TMEM127 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               2                62
  CLUS_3               2                70
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM127 MUTATED        4      0      1
  TMEM127 WILD-TYPE    213     75     98
D748V8, multiclass
        clus
vv       TMEM127 MUTATED TMEM127 WILD-TYPE
  CLUS_1               4               213
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM127 MUTATED        2      0      2
  TMEM127 WILD-TYPE    119    108     70
D748V9, multiclass
        clus
vv       TMEM127 MUTATED TMEM127 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               0               108
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM127 MUTATED        1      0      2      0      1
  TMEM127 WILD-TYPE     87     66     43     55     46
D748V10, multiclass
        clus
vv       TMEM127 MUTATED TMEM127 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(749) Variable = ZNF142 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF142 MUTATED        1     15      3      0
  ZNF142 WILD-TYPE    203    122     44      3
D749V1, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             15              122
  CLUS_3              3               44
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF142 MUTATED        2     10      2      1      0
  ZNF142 WILD-TYPE     37     86     42     87     80
D749V2, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              2               37
  CLUS_2             10               86
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF142 MUTATED        0      6      4      1      7
  ZNF142 WILD-TYPE     26     73     69     81     51
D749V3, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              6               73
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              7               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF142 MUTATED        3     12      2      1
  ZNF142 WILD-TYPE    124     39     69     68
D749V4, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              3              124
  CLUS_2             12               39
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF142 MUTATED        0      1     11      1      4
  ZNF142 WILD-TYPE     84     84     74     68     43
D749V5, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3             11               74
  CLUS_4              1               68
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF142 MUTATED        5      2      0     10
  ZNF142 WILD-TYPE     90     72    121     70
D749V6, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              5               90
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4             10               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF142 MUTATED        6      5      2      5      1      0
  ZNF142 WILD-TYPE     46     59     70     99     39     59
D749V7, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              6               46
  CLUS_2              5               59
  CLUS_3              2               70
  CLUS_4              5               99
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF142 MUTATED       15      1      3
  ZNF142 WILD-TYPE    202     74     96
D749V8, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1             15              202
  CLUS_2              1               74
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF142 MUTATED        6      3      5
  ZNF142 WILD-TYPE    115    105     67
D749V9, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              3              105
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF142 MUTATED        4      1      2      1      6
  ZNF142 WILD-TYPE     84     65     43     54     41
D749V10, multiclass
        clus
vv       ZNF142 MUTATED ZNF142 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(750) Variable = MRPS5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS5 MUTATED        0      5      1      0
  MRPS5 WILD-TYPE    204    132     46      3
D750V1, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             5             132
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRPS5 MUTATED        1      5      0      0      1
  MRPS5 WILD-TYPE     38     91     44     88     79
D750V2, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRPS5 MUTATED        0      2      1      1      2
  MRPS5 WILD-TYPE     26     77     72     81     56
D750V3, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS5 MUTATED        0      3      2      1
  MRPS5 WILD-TYPE    127     48     69     68
D750V4, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             3              48
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRPS5 MUTATED        0      0      6      0      1
  MRPS5 WILD-TYPE     84     85     79     69     46
D750V5, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             6              79
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPS5 MUTATED        2      1      1      3
  MRPS5 WILD-TYPE     93     73    120     77
D750V6, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MRPS5 MUTATED        2      2      2      0      1      0
  MRPS5 WILD-TYPE     50     62     70    104     39     59
D750V7, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MRPS5 MUTATED        5      2      0
  MRPS5 WILD-TYPE    212     73     99
D750V8, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             2              73
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MRPS5 MUTATED        2      0      5
  MRPS5 WILD-TYPE    119    108     67
D750V9, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRPS5 MUTATED        3      0      2      0      2
  MRPS5 WILD-TYPE     85     66     43     55     45
D750V10, multiclass
        clus
vv       MRPS5 MUTATED MRPS5 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(751) Variable = CEP250 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP250 MUTATED        3     14      4      0
  CEP250 WILD-TYPE    201    123     43      3
D751V1, multiclass
        clus
vv       CEP250 MUTATED CEP250 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             14              123
  CLUS_3              4               43
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP250 MUTATED        4     10      0      1      0
  CEP250 WILD-TYPE     35     86     44     87     80
D751V2, multiclass
        clus
vv       CEP250 MUTATED CEP250 WILD-TYPE
  CLUS_1              4               35
  CLUS_2             10               86
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP250 MUTATED        0      4     10      0      6
  CEP250 WILD-TYPE     26     75     63     82     52
D751V3, multiclass
        clus
vv       CEP250 MUTATED CEP250 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3             10               63
  CLUS_4              0               82
  CLUS_5              6               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP250 MUTATED        3     14      2      1
  CEP250 WILD-TYPE    124     37     69     68
D751V4, multiclass
        clus
vv       CEP250 MUTATED CEP250 WILD-TYPE
  CLUS_1              3              124
  CLUS_2             14               37
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP250 MUTATED        1      2      9      3      5
  CEP250 WILD-TYPE     83     83     76     66     42
D751V5, multiclass
        clus
vv       CEP250 MUTATED CEP250 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              9               76
  CLUS_4              3               66
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP250 MUTATED        5      1      1     13
  CEP250 WILD-TYPE     90     73    120     67
D751V6, multiclass
        clus
vv       CEP250 MUTATED CEP250 WILD-TYPE
  CLUS_1              5               90
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4             13               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEP250 MUTATED        4      6      6      3      1      1
  CEP250 WILD-TYPE     48     58     66    101     39     58
D751V7, multiclass
        clus
vv       CEP250 MUTATED CEP250 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              6               58
  CLUS_3              6               66
  CLUS_4              3              101
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP250 MUTATED       19      1      1
  CEP250 WILD-TYPE    198     74     98
D751V8, multiclass
        clus
vv       CEP250 MUTATED CEP250 WILD-TYPE
  CLUS_1             19              198
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP250 MUTATED        8      3      2
  CEP250 WILD-TYPE    113    105     70
D751V9, multiclass
        clus
vv       CEP250 MUTATED CEP250 WILD-TYPE
  CLUS_1              8              113
  CLUS_2              3              105
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP250 MUTATED        6      1      0      1      5
  CEP250 WILD-TYPE     82     65     45     54     42
D751V10, multiclass
        clus
vv       CEP250 MUTATED CEP250 WILD-TYPE
  CLUS_1              6               82
  CLUS_2              1               65
  CLUS_3              0               45
  CLUS_4              1               54
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(752) Variable = ARMC4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMC4 MUTATED        4     11      3      0
  ARMC4 WILD-TYPE    200    126     44      3
D752V1, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            11             126
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARMC4 MUTATED        1     10      1      4      1
  ARMC4 WILD-TYPE     38     86     43     84     79
D752V2, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             1              38
  CLUS_2            10              86
  CLUS_3             1              43
  CLUS_4             4              84
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARMC4 MUTATED        1      2      3      2      5
  ARMC4 WILD-TYPE     25     77     70     80     53
D752V3, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMC4 MUTATED        1      6      2      4
  ARMC4 WILD-TYPE    126     45     69     65
D752V4, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             6              45
  CLUS_3             2              69
  CLUS_4             4              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARMC4 MUTATED        3      4      8      0      3
  ARMC4 WILD-TYPE     81     81     77     69     44
D752V5, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             4              81
  CLUS_3             8              77
  CLUS_4             0              69
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMC4 MUTATED        2      4      3      9
  ARMC4 WILD-TYPE     93     70    118     71
D752V6, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             4              70
  CLUS_3             3             118
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARMC4 MUTATED        4      1      4      3      4      2
  ARMC4 WILD-TYPE     48     63     68    101     36     57
D752V7, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             1              63
  CLUS_3             4              68
  CLUS_4             3             101
  CLUS_5             4              36
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARMC4 MUTATED       10      3      5
  ARMC4 WILD-TYPE    207     72     94
D752V8, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             3              72
  CLUS_3             5              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ARMC4 MUTATED        7      7      2
  ARMC4 WILD-TYPE    114    101     70
D752V9, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             7             101
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARMC4 MUTATED        5      3      0      4      4
  ARMC4 WILD-TYPE     83     63     45     51     43
D752V10, multiclass
        clus
vv       ARMC4 MUTATED ARMC4 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             3              63
  CLUS_3             0              45
  CLUS_4             4              51
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(753) Variable = PCF11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCF11 MUTATED        6     15      1      0
  PCF11 WILD-TYPE    198    122     46      3
D753V1, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             6             198
  CLUS_2            15             122
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCF11 MUTATED        3      9      1      3      2
  PCF11 WILD-TYPE     36     87     43     85     78
D753V2, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             9              87
  CLUS_3             1              43
  CLUS_4             3              85
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCF11 MUTATED        1      3      8      1      5
  PCF11 WILD-TYPE     25     76     65     81     53
D753V3, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             8              65
  CLUS_4             1              81
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCF11 MUTATED        6      8      2      2
  PCF11 WILD-TYPE    121     43     69     67
D753V4, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             6             121
  CLUS_2             8              43
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCF11 MUTATED        3      2      8      4      3
  PCF11 WILD-TYPE     81     83     77     65     44
D753V5, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             2              83
  CLUS_3             8              77
  CLUS_4             4              65
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCF11 MUTATED        6      3      4      7
  PCF11 WILD-TYPE     89     71    117     73
D753V6, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             3              71
  CLUS_3             4             117
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCF11 MUTATED        6      6      4      3      1      2
  PCF11 WILD-TYPE     46     58     68    101     39     57
D753V7, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             6              58
  CLUS_3             4              68
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCF11 MUTATED       15      3      4
  PCF11 WILD-TYPE    202     72     95
D753V8, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1            15             202
  CLUS_2             3              72
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PCF11 MUTATED       10      3      3
  PCF11 WILD-TYPE    111    105     69
D753V9, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1            10             111
  CLUS_2             3             105
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCF11 MUTATED        8      2      2      2      2
  PCF11 WILD-TYPE     80     64     43     53     45
D753V10, multiclass
        clus
vv       PCF11 MUTATED PCF11 WILD-TYPE
  CLUS_1             8              80
  CLUS_2             2              64
  CLUS_3             2              43
  CLUS_4             2              53
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(754) Variable = C2ORF76 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF76 MUTATED        1      2      0      1
  C2ORF76 WILD-TYPE    203    135     47      2
D754V1, multiclass
        clus
vv       C2ORF76 MUTATED C2ORF76 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               2               135
  CLUS_3               0                47
  CLUS_4               1                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C2ORF76 MUTATED        0      3      0      0      0
  C2ORF76 WILD-TYPE     39     93     44     88     80
D754V2, multiclass
        clus
vv       C2ORF76 MUTATED C2ORF76 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C2ORF76 MUTATED        0      1      1      1      0
  C2ORF76 WILD-TYPE     26     78     72     81     58
D754V3, multiclass
        clus
vv       C2ORF76 MUTATED C2ORF76 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                78
  CLUS_3               1                72
  CLUS_4               1                81
  CLUS_5               0                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF76 MUTATED        0      1      1      1
  C2ORF76 WILD-TYPE    127     50     70     68
D754V4, multiclass
        clus
vv       C2ORF76 MUTATED C2ORF76 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               1                50
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C2ORF76 MUTATED        0      1      1      1      1
  C2ORF76 WILD-TYPE     84     84     84     68     46
D754V5, multiclass
        clus
vv       C2ORF76 MUTATED C2ORF76 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               1                84
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2ORF76 MUTATED        2      1      0      1
  C2ORF76 WILD-TYPE     93     73    121     79
D754V6, multiclass
        clus
vv       C2ORF76 MUTATED C2ORF76 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4               1                79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C2ORF76 MUTATED        1      0      0      3      0      0
  C2ORF76 WILD-TYPE     51     64     72    101     40     59
D754V7, multiclass
        clus
vv       C2ORF76 MUTATED C2ORF76 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               0                64
  CLUS_3               0                72
  CLUS_4               3               101
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF76 MUTATED        2      1      1
  C2ORF76 WILD-TYPE    215     74     98
D754V8, multiclass
        clus
vv       C2ORF76 MUTATED C2ORF76 WILD-TYPE
  CLUS_1               2               215
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C2ORF76 MUTATED        1      2      0
  C2ORF76 WILD-TYPE    120    106     72
D754V9, multiclass
        clus
vv       C2ORF76 MUTATED C2ORF76 WILD-TYPE
  CLUS_1               1               120
  CLUS_2               2               106
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C2ORF76 MUTATED        2      1      0      0      0
  C2ORF76 WILD-TYPE     86     65     45     55     47
D754V10, multiclass
        clus
vv       C2ORF76 MUTATED C2ORF76 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               1                65
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(755) Variable = MBNL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBNL2 MUTATED        2      9      0      0
  MBNL2 WILD-TYPE    202    128     47      3
D755V1, multiclass
        clus
vv       MBNL2 MUTATED MBNL2 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             9             128
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBNL2 MUTATED        0      6      0      0      1
  MBNL2 WILD-TYPE     39     90     44     88     79
D755V2, multiclass
        clus
vv       MBNL2 MUTATED MBNL2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             6              90
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBNL2 MUTATED        1      3      4      0      2
  MBNL2 WILD-TYPE     25     76     69     82     56
D755V3, multiclass
        clus
vv       MBNL2 MUTATED MBNL2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBNL2 MUTATED        3      4      2      1
  MBNL2 WILD-TYPE    124     47     69     68
D755V4, multiclass
        clus
vv       MBNL2 MUTATED MBNL2 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBNL2 MUTATED        1      5      2      2      0
  MBNL2 WILD-TYPE     83     80     83     67     47
D755V5, multiclass
        clus
vv       MBNL2 MUTATED MBNL2 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             5              80
  CLUS_3             2              83
  CLUS_4             2              67
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBNL2 MUTATED        4      3      0      3
  MBNL2 WILD-TYPE     91     71    121     77
D755V6, multiclass
        clus
vv       MBNL2 MUTATED MBNL2 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             3              71
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MBNL2 MUTATED        4      3      0      2      1      1
  MBNL2 WILD-TYPE     48     61     72    102     39     58
D755V7, multiclass
        clus
vv       MBNL2 MUTATED MBNL2 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             3              61
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MBNL2 MUTATED        7      1      3
  MBNL2 WILD-TYPE    210     74     96
D755V8, multiclass
        clus
vv       MBNL2 MUTATED MBNL2 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             1              74
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MBNL2 MUTATED        4      2      0
  MBNL2 WILD-TYPE    117    106     72
D755V9, multiclass
        clus
vv       MBNL2 MUTATED MBNL2 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             2             106
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBNL2 MUTATED        2      2      0      0      2
  MBNL2 WILD-TYPE     86     64     45     55     45
D755V10, multiclass
        clus
vv       MBNL2 MUTATED MBNL2 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             2              64
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(756) Variable = ITGAE MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGAE MUTATED        2     12      1      0
  ITGAE WILD-TYPE    202    125     46      3
D756V1, multiclass
        clus
vv       ITGAE MUTATED ITGAE WILD-TYPE
  CLUS_1             2             202
  CLUS_2            12             125
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGAE MUTATED        3      8      2      0      1
  ITGAE WILD-TYPE     36     88     42     88     79
D756V2, multiclass
        clus
vv       ITGAE MUTATED ITGAE WILD-TYPE
  CLUS_1             3              36
  CLUS_2             8              88
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGAE MUTATED        2      3      3      0      3
  ITGAE WILD-TYPE     24     76     70     82     55
D756V3, multiclass
        clus
vv       ITGAE MUTATED ITGAE WILD-TYPE
  CLUS_1             2              24
  CLUS_2             3              76
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGAE MUTATED        2      5      2      2
  ITGAE WILD-TYPE    125     46     69     67
D756V4, multiclass
        clus
vv       ITGAE MUTATED ITGAE WILD-TYPE
  CLUS_1             2             125
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGAE MUTATED        1      3      5      3      2
  ITGAE WILD-TYPE     83     82     80     66     45
D756V5, multiclass
        clus
vv       ITGAE MUTATED ITGAE WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             5              80
  CLUS_4             3              66
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGAE MUTATED        5      3      1      5
  ITGAE WILD-TYPE     90     71    120     75
D756V6, multiclass
        clus
vv       ITGAE MUTATED ITGAE WILD-TYPE
  CLUS_1             5              90
  CLUS_2             3              71
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ITGAE MUTATED        3      4      4      1      3      0
  ITGAE WILD-TYPE     49     60     68    103     37     59
D756V7, multiclass
        clus
vv       ITGAE MUTATED ITGAE WILD-TYPE
  CLUS_1             3              49
  CLUS_2             4              60
  CLUS_3             4              68
  CLUS_4             1             103
  CLUS_5             3              37
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGAE MUTATED       13      1      1
  ITGAE WILD-TYPE    204     74     98
D756V8, multiclass
        clus
vv       ITGAE MUTATED ITGAE WILD-TYPE
  CLUS_1            13             204
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGAE MUTATED        5      2      5
  ITGAE WILD-TYPE    116    106     67
D756V9, multiclass
        clus
vv       ITGAE MUTATED ITGAE WILD-TYPE
  CLUS_1             5             116
  CLUS_2             2             106
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGAE MUTATED        3      1      2      0      6
  ITGAE WILD-TYPE     85     65     43     55     41
D756V10, multiclass
        clus
vv       ITGAE MUTATED ITGAE WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(757) Variable = KIF6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF6 MUTATED        4      7      0      0
  KIF6 WILD-TYPE    200    130     47      3
D757V1, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            4            200
  CLUS_2            7            130
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF6 MUTATED        1      6      0      1      1
  KIF6 WILD-TYPE     38     90     44     87     79
D757V2, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            6             90
  CLUS_3            0             44
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF6 MUTATED        0      2      2      3      3
  KIF6 WILD-TYPE     26     77     71     79     55
D757V3, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            2             71
  CLUS_4            3             79
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF6 MUTATED        2      3      2      3
  KIF6 WILD-TYPE    125     48     69     66
D757V4, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            3             48
  CLUS_3            2             69
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF6 MUTATED        2      2      6      1      1
  KIF6 WILD-TYPE     82     83     79     68     46
D757V5, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            2             83
  CLUS_3            6             79
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF6 MUTATED        1      3      3      5
  KIF6 WILD-TYPE     94     71    118     75
D757V6, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            3             71
  CLUS_3            3            118
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIF6 MUTATED        1      2      4      3      1      1
  KIF6 WILD-TYPE     51     62     68    101     39     58
D757V7, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            2             62
  CLUS_3            4             68
  CLUS_4            3            101
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KIF6 MUTATED        6      4      2
  KIF6 WILD-TYPE    211     71     97
D757V8, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            6            211
  CLUS_2            4             71
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  KIF6 MUTATED        5      2      2
  KIF6 WILD-TYPE    116    106     70
D757V9, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            2            106
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF6 MUTATED        3      1      1      2      2
  KIF6 WILD-TYPE     85     65     44     53     45
D757V10, multiclass
        clus
vv       KIF6 MUTATED KIF6 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            2             53
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(758) Variable = TNFSF13 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFSF13 MUTATED        0      3      0      0
  TNFSF13 WILD-TYPE    204    134     47      3
D758V1, multiclass
        clus
vv       TNFSF13 MUTATED TNFSF13 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               3               134
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFSF13 MUTATED        0      1      1      0      1
  TNFSF13 WILD-TYPE     39     95     43     88     79
D758V2, multiclass
        clus
vv       TNFSF13 MUTATED TNFSF13 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               1                95
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFSF13 MUTATED        0      2      0      0      0
  TNFSF13 WILD-TYPE     26     77     73     82     58
D758V3, multiclass
[1] "Remove cluster labels:" "TNFSF13 MUTATED"       
clus
  TNFSF13 MUTATED TNFSF13 WILD-TYPE 
                2               316 
       TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ        TCGA-B7-A5TK 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-B7-A5TN        TCGA-BR-4183        TCGA-BR-4184        TCGA-BR-4187 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-4188        TCGA-BR-4191        TCGA-BR-4201        TCGA-BR-4253 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-4255        TCGA-BR-4256        TCGA-BR-4257        TCGA-BR-4267 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-4279        TCGA-BR-4280        TCGA-BR-4292        TCGA-BR-4294 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-4357        TCGA-BR-4361        TCGA-BR-4362        TCGA-BR-4363 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-4366        TCGA-BR-4368        TCGA-BR-4369        TCGA-BR-4370 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-4371        TCGA-BR-6452        TCGA-BR-6453        TCGA-BR-6454 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457        TCGA-BR-6458 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-6564        TCGA-BR-6565        TCGA-BR-6566        TCGA-BR-6705 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-6706        TCGA-BR-6707        TCGA-BR-6709        TCGA-BR-6710 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803        TCGA-BR-6852 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703        TCGA-BR-7704 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-7715        TCGA-BR-7716        TCGA-BR-7717        TCGA-BR-7722 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8060        TCGA-BR-8080        TCGA-BR-8081        TCGA-BR-8284 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8285        TCGA-BR-8286        TCGA-BR-8289        TCGA-BR-8291 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8361 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8366 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8367        TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8370 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8380        TCGA-BR-8381 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8484 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8588        TCGA-BR-8589 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A44U        TCGA-BR-A452 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-A453        TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-A4IU        TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-A4J1        TCGA-BR-A4J2        TCGA-BR-A4J4        TCGA-BR-A4J5 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-A4PE        TCGA-BR-A4PF        TCGA-BR-A4QI        TCGA-BR-A4QL 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5804 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525        TCGA-CD-8526 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CD-8527        TCGA-CD-8528        TCGA-CD-8529        TCGA-CD-8530 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8533        TCGA-CD-8534 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CD-A489        TCGA-CD-A48A        TCGA-CD-A48C        TCGA-CD-A4MG 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CD-A4MH        TCGA-CD-A4MI        TCGA-CD-A4MJ        TCGA-CG-4300 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-4301        TCGA-CG-4304        TCGA-CG-4305        TCGA-CG-4306 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-4436        TCGA-CG-4437        TCGA-CG-4438        TCGA-CG-4442 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-4443        TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-4460        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-4474        TCGA-CG-4475        TCGA-CG-4476        TCGA-CG-4477 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-5716        TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5724        TCGA-CG-5725 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-6525        TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8573        TCGA-D7-8574 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-8575        TCGA-D7-8578        TCGA-D7-A4YT        TCGA-D7-A4YU 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-A4YV        TCGA-D7-A4YX        TCGA-D7-A4YY        TCGA-D7-A4Z0 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-A6EV        TCGA-D7-A6EX        TCGA-D7-A6EY        TCGA-D7-A6EZ 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-A6F0        TCGA-D7-A748        TCGA-EQ-8122        TCGA-EQ-A4SO 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-F1-A72C        TCGA-FP-7916        TCGA-FP-7998        TCGA-HF-7131 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-HF-7132        TCGA-HF-7133        TCGA-HF-7134        TCGA-HF-7136 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-HF-A5NB        TCGA-HJ-7597        TCGA-HU-8602        TCGA-HU-8608 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-HU-8610        TCGA-HU-A4GF        TCGA-HU-A4GQ        TCGA-HU-A4GT 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-HU-A4GU        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-HU-A4H3        TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4HD 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-IN-A6RI        TCGA-IN-A6RL        TCGA-IN-A6RN        TCGA-IN-A6RO 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-IN-A6RR        TCGA-IN-A6RS        TCGA-IN-A7NR        TCGA-IN-A7NT 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-IN-A7NU        TCGA-IN-AB1V        TCGA-IN-AB1X        TCGA-IP-7968 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-KB-A6F5        TCGA-KB-A93G        TCGA-MX-A5UG        TCGA-RD-A7BS 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-RD-A7BT        TCGA-RD-A7BW        TCGA-RD-A7C1        TCGA-RD-A8MV 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-RD-A8MW        TCGA-RD-A8N0        TCGA-RD-A8N1        TCGA-SW-A7EA 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-SW-A7EB        TCGA-VQ-A8DL        TCGA-VQ-A8DT        TCGA-VQ-A8DU 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-VQ-A8E2        TCGA-VQ-A8E7        TCGA-VQ-A8P2        TCGA-VQ-A8P3 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-VQ-A8PE        TCGA-VQ-A8PK        TCGA-VQ-A8PM        TCGA-VQ-A8PQ 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-VQ-A91U        TCGA-VQ-A91V        TCGA-VQ-A92D        TCGA-VQ-AA64 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-VQ-AA69        TCGA-VQ-AA6A        TCGA-VQ-AA6B        TCGA-VQ-AA6F 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-VQ-AA6G        TCGA-VQ-AA6I        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFSF13 MUTATED        0      1      1      0
  TNFSF13 WILD-TYPE    127     50     70     69
D758V4, multiclass
[1] "Remove cluster labels:" "TNFSF13 MUTATED"       
clus
  TNFSF13 MUTATED TNFSF13 WILD-TYPE 
                2               316 
       TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ        TCGA-B7-A5TK 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-B7-A5TN        TCGA-BR-4183        TCGA-BR-4184        TCGA-BR-4187 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-4188        TCGA-BR-4191        TCGA-BR-4201        TCGA-BR-4253 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-4255        TCGA-BR-4256        TCGA-BR-4257        TCGA-BR-4267 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-4279        TCGA-BR-4280        TCGA-BR-4292        TCGA-BR-4294 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-4357        TCGA-BR-4361        TCGA-BR-4362        TCGA-BR-4363 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-4366        TCGA-BR-4368        TCGA-BR-4369        TCGA-BR-4370 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-4371        TCGA-BR-6452        TCGA-BR-6453        TCGA-BR-6454 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457        TCGA-BR-6458 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-6564        TCGA-BR-6565        TCGA-BR-6566        TCGA-BR-6705 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-6706        TCGA-BR-6707        TCGA-BR-6709        TCGA-BR-6710 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803        TCGA-BR-6852 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703        TCGA-BR-7704 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-7715        TCGA-BR-7716        TCGA-BR-7717        TCGA-BR-7722 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8060        TCGA-BR-8080        TCGA-BR-8081        TCGA-BR-8284 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8285        TCGA-BR-8286        TCGA-BR-8289        TCGA-BR-8291 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8361 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8366 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8367        TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8370 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8380        TCGA-BR-8381 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8484 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8588        TCGA-BR-8589 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A44U        TCGA-BR-A452 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-A453        TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-A4IU        TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-A4J1        TCGA-BR-A4J2        TCGA-BR-A4J4        TCGA-BR-A4J5 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-A4J6        TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-A4PE        TCGA-BR-A4PF        TCGA-BR-A4QI        TCGA-BR-A4QL 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5804 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525        TCGA-CD-8526 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CD-8527        TCGA-CD-8528        TCGA-CD-8529        TCGA-CD-8530 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8533        TCGA-CD-8534 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CD-A489        TCGA-CD-A48A        TCGA-CD-A48C        TCGA-CD-A4MG 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CD-A4MH        TCGA-CD-A4MI        TCGA-CD-A4MJ        TCGA-CG-4300 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-4301        TCGA-CG-4304        TCGA-CG-4305        TCGA-CG-4306 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-4436        TCGA-CG-4437        TCGA-CG-4438        TCGA-CG-4442 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-4443        TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-4460        TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-4474        TCGA-CG-4475        TCGA-CG-4476        TCGA-CG-4477 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-5716        TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-5720        TCGA-CG-5721        TCGA-CG-5724        TCGA-CG-5725 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-6525        TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8573        TCGA-D7-8574 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-8575        TCGA-D7-8578        TCGA-D7-A4YT        TCGA-D7-A4YU 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-A4YV        TCGA-D7-A4YX        TCGA-D7-A4YY        TCGA-D7-A4Z0 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-A6EV        TCGA-D7-A6EX        TCGA-D7-A6EY        TCGA-D7-A6EZ 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-D7-A6F0        TCGA-D7-A748        TCGA-EQ-8122        TCGA-EQ-A4SO 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-F1-A72C        TCGA-FP-7916        TCGA-FP-7998        TCGA-HF-7131 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-HF-7132        TCGA-HF-7133        TCGA-HF-7134        TCGA-HF-7136 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-HF-A5NB        TCGA-HJ-7597        TCGA-HU-8602        TCGA-HU-8608 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-HU-8610        TCGA-HU-A4GF        TCGA-HU-A4GQ        TCGA-HU-A4GT 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-HU-A4GU        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-HU-A4H3        TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4HD 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-IN-A6RI        TCGA-IN-A6RL        TCGA-IN-A6RN        TCGA-IN-A6RO 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-IN-A6RR        TCGA-IN-A6RS        TCGA-IN-A7NR        TCGA-IN-A7NT 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-IN-A7NU        TCGA-IN-AB1V        TCGA-IN-AB1X        TCGA-IP-7968 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-KB-A6F5        TCGA-KB-A93G        TCGA-MX-A5UG        TCGA-RD-A7BS 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-RD-A7BT        TCGA-RD-A7BW        TCGA-RD-A7C1        TCGA-RD-A8MV 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-RD-A8MW        TCGA-RD-A8N0        TCGA-RD-A8N1        TCGA-SW-A7EA 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-SW-A7EB        TCGA-VQ-A8DL        TCGA-VQ-A8DT        TCGA-VQ-A8DU 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-VQ-A8E2        TCGA-VQ-A8E7        TCGA-VQ-A8P2        TCGA-VQ-A8P3 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-VQ-A8PE        TCGA-VQ-A8PK        TCGA-VQ-A8PM        TCGA-VQ-A8PQ 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-VQ-A91U        TCGA-VQ-A91V        TCGA-VQ-A92D        TCGA-VQ-AA64 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-VQ-AA69        TCGA-VQ-AA6A        TCGA-VQ-AA6B        TCGA-VQ-AA6F 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
       TCGA-VQ-AA6G        TCGA-VQ-AA6I        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" "TNFSF13 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFSF13 MUTATED        0      0      2      1      0
  TNFSF13 WILD-TYPE     84     85     83     68     47
D758V5, multiclass
        clus
vv       TNFSF13 MUTATED TNFSF13 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               2                83
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFSF13 MUTATED        1      1      1      0
  TNFSF13 WILD-TYPE     94     73    120     80
D758V6, multiclass
        clus
vv       TNFSF13 MUTATED TNFSF13 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               0                80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNFSF13 MUTATED        1      2      0      0      0      0
  TNFSF13 WILD-TYPE     51     62     72    104     40     59
D758V7, multiclass
        clus
vv       TNFSF13 MUTATED TNFSF13 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               2                62
  CLUS_3               0                72
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFSF13 MUTATED        2      1      0
  TNFSF13 WILD-TYPE    215     74     99
D758V8, multiclass
        clus
vv       TNFSF13 MUTATED TNFSF13 WILD-TYPE
  CLUS_1               2               215
  CLUS_2               1                74
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TNFSF13 MUTATED        1      0      2
  TNFSF13 WILD-TYPE    120    108     70
D758V9, multiclass
        clus
vv       TNFSF13 MUTATED TNFSF13 WILD-TYPE
  CLUS_1               1               120
  CLUS_2               0               108
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFSF13 MUTATED        0      0      2      0      1
  TNFSF13 WILD-TYPE     88     66     43     55     46
D758V10, multiclass
        clus
vv       TNFSF13 MUTATED TNFSF13 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               0                66
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(759) Variable = CASKIN2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASKIN2 MUTATED        5      8      2      0
  CASKIN2 WILD-TYPE    199    129     45      3
D759V1, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               5               199
  CLUS_2               8               129
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASKIN2 MUTATED        0      5      2      5      2
  CASKIN2 WILD-TYPE     39     91     42     83     78
D759V2, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               5                91
  CLUS_3               2                42
  CLUS_4               5                83
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASKIN2 MUTATED        0      4      4      2      2
  CASKIN2 WILD-TYPE     26     75     69     80     56
D759V3, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               4                75
  CLUS_3               4                69
  CLUS_4               2                80
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASKIN2 MUTATED        3      4      4      1
  CASKIN2 WILD-TYPE    124     47     67     68
D759V4, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               4                47
  CLUS_3               4                67
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASKIN2 MUTATED        3      0      6      3      3
  CASKIN2 WILD-TYPE     81     85     79     66     44
D759V5, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               3                81
  CLUS_2               0                85
  CLUS_3               6                79
  CLUS_4               3                66
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASKIN2 MUTATED        5      1      2      7
  CASKIN2 WILD-TYPE     90     73    119     73
D759V6, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               5                90
  CLUS_2               1                73
  CLUS_3               2               119
  CLUS_4               7                73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASKIN2 MUTATED        3      4      1      3      3      1
  CASKIN2 WILD-TYPE     49     60     71    101     37     58
D759V7, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               4                60
  CLUS_3               1                71
  CLUS_4               3               101
  CLUS_5               3                37
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CASKIN2 MUTATED       11      0      4
  CASKIN2 WILD-TYPE    206     75     95
D759V8, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1              11               206
  CLUS_2               0                75
  CLUS_3               4                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CASKIN2 MUTATED        4      2      7
  CASKIN2 WILD-TYPE    117    106     65
D759V9, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               2               106
  CLUS_3               7                65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASKIN2 MUTATED        4      0      4      2      3
  CASKIN2 WILD-TYPE     84     66     41     53     44
D759V10, multiclass
        clus
vv       CASKIN2 MUTATED CASKIN2 WILD-TYPE
  CLUS_1               4                84
  CLUS_2               0                66
  CLUS_3               4                41
  CLUS_4               2                53
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(760) Variable = ALPK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPK1 MUTATED        3     15      1      0
  ALPK1 WILD-TYPE    201    122     46      3
D760V1, multiclass
        clus
vv       ALPK1 MUTATED ALPK1 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            15             122
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALPK1 MUTATED        1     12      5      0      0
  ALPK1 WILD-TYPE     38     84     39     88     80
D760V2, multiclass
        clus
vv       ALPK1 MUTATED ALPK1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2            12              84
  CLUS_3             5              39
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALPK1 MUTATED        0      7      8      1      1
  ALPK1 WILD-TYPE     26     72     65     81     57
D760V3, multiclass
        clus
vv       ALPK1 MUTATED ALPK1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             7              72
  CLUS_3             8              65
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPK1 MUTATED        3      7      5      2
  ALPK1 WILD-TYPE    124     44     66     67
D760V4, multiclass
        clus
vv       ALPK1 MUTATED ALPK1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             7              44
  CLUS_3             5              66
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALPK1 MUTATED        0      4      9      2      3
  ALPK1 WILD-TYPE     84     81     76     67     44
D760V5, multiclass
        clus
vv       ALPK1 MUTATED ALPK1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             4              81
  CLUS_3             9              76
  CLUS_4             2              67
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ALPK1 MUTATED        4      5      2      7
  ALPK1 WILD-TYPE     91     69    119     73
D760V6, multiclass
        clus
vv       ALPK1 MUTATED ALPK1 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             5              69
  CLUS_3             2             119
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ALPK1 MUTATED        5      4      4      2      4      0
  ALPK1 WILD-TYPE     47     60     68    102     36     59
D760V7, multiclass
        clus
vv       ALPK1 MUTATED ALPK1 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             4              60
  CLUS_3             4              68
  CLUS_4             2             102
  CLUS_5             4              36
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALPK1 MUTATED       15      3      1
  ALPK1 WILD-TYPE    202     72     98
D760V8, multiclass
        clus
vv       ALPK1 MUTATED ALPK1 WILD-TYPE
  CLUS_1            15             202
  CLUS_2             3              72
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ALPK1 MUTATED        7      2      7
  ALPK1 WILD-TYPE    114    106     65
D760V9, multiclass
        clus
vv       ALPK1 MUTATED ALPK1 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             2             106
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ALPK1 MUTATED        6      2      3      0      5
  ALPK1 WILD-TYPE     82     64     42     55     42
D760V10, multiclass
        clus
vv       ALPK1 MUTATED ALPK1 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             2              64
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(761) Variable = SUCLG2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUCLG2 MUTATED        0      7      0      0
  SUCLG2 WILD-TYPE    204    130     47      3
D761V1, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SUCLG2 MUTATED        0      4      0      0      1
  SUCLG2 WILD-TYPE     39     92     44     88     79
D761V2, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SUCLG2 MUTATED        1      1      1      1      2
  SUCLG2 WILD-TYPE     25     78     72     81     56
D761V3, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUCLG2 MUTATED        1      3      1      1
  SUCLG2 WILD-TYPE    126     48     70     68
D761V4, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              3               48
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SUCLG2 MUTATED        1      1      2      1      2
  SUCLG2 WILD-TYPE     83     84     83     68     45
D761V5, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              2               83
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUCLG2 MUTATED        2      1      1      3
  SUCLG2 WILD-TYPE     93     73    120     77
D761V6, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SUCLG2 MUTATED        3      2      0      0      1      1
  SUCLG2 WILD-TYPE     49     62     72    104     39     58
D761V7, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SUCLG2 MUTATED        4      2      1
  SUCLG2 WILD-TYPE    213     73     98
D761V8, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              4              213
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SUCLG2 MUTATED        2      0      3
  SUCLG2 WILD-TYPE    119    108     69
D761V9, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SUCLG2 MUTATED        1      0      1      0      3
  SUCLG2 WILD-TYPE     87     66     44     55     44
D761V10, multiclass
        clus
vv       SUCLG2 MUTATED SUCLG2 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(762) Variable = NOS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOS1 MUTATED        7     24      0      0
  NOS1 WILD-TYPE    197    113     47      3
D762V1, multiclass
        clus
vv       NOS1 MUTATED NOS1 WILD-TYPE
  CLUS_1            7            197
  CLUS_2           24            113
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOS1 MUTATED        3     13      4      1      3
  NOS1 WILD-TYPE     36     83     40     87     77
D762V2, multiclass
        clus
vv       NOS1 MUTATED NOS1 WILD-TYPE
  CLUS_1            3             36
  CLUS_2           13             83
  CLUS_3            4             40
  CLUS_4            1             87
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOS1 MUTATED        2      8      7      2      5
  NOS1 WILD-TYPE     24     71     66     80     53
D762V3, multiclass
        clus
vv       NOS1 MUTATED NOS1 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            8             71
  CLUS_3            7             66
  CLUS_4            2             80
  CLUS_5            5             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOS1 MUTATED        4     13      4      3
  NOS1 WILD-TYPE    123     38     67     66
D762V4, multiclass
        clus
vv       NOS1 MUTATED NOS1 WILD-TYPE
  CLUS_1            4            123
  CLUS_2           13             38
  CLUS_3            4             67
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOS1 MUTATED        2      2     18      4      4
  NOS1 WILD-TYPE     82     83     67     65     43
D762V5, multiclass
        clus
vv       NOS1 MUTATED NOS1 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            2             83
  CLUS_3           18             67
  CLUS_4            4             65
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOS1 MUTATED        6      3      6     15
  NOS1 WILD-TYPE     89     71    115     65
D762V6, multiclass
        clus
vv       NOS1 MUTATED NOS1 WILD-TYPE
  CLUS_1            6             89
  CLUS_2            3             71
  CLUS_3            6            115
  CLUS_4           15             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOS1 MUTATED        8     10      7      3      1      2
  NOS1 WILD-TYPE     44     54     65    101     39     57
D762V7, multiclass
        clus
vv       NOS1 MUTATED NOS1 WILD-TYPE
  CLUS_1            8             44
  CLUS_2           10             54
  CLUS_3            7             65
  CLUS_4            3            101
  CLUS_5            1             39
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOS1 MUTATED       26      3      2
  NOS1 WILD-TYPE    191     72     97
D762V8, multiclass
        clus
vv       NOS1 MUTATED NOS1 WILD-TYPE
  CLUS_1           26            191
  CLUS_2            3             72
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOS1 MUTATED       14      2      4
  NOS1 WILD-TYPE    107    106     68
D762V9, multiclass
        clus
vv       NOS1 MUTATED NOS1 WILD-TYPE
  CLUS_1           14            107
  CLUS_2            2            106
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOS1 MUTATED        9      0      3      0      8
  NOS1 WILD-TYPE     79     66     42     55     39
D762V10, multiclass
        clus
vv       NOS1 MUTATED NOS1 WILD-TYPE
  CLUS_1            9             79
  CLUS_2            0             66
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            8             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(763) Variable = SLA MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLA MUTATED        0      6      0      0
  SLA WILD-TYPE    204    131     47      3
D763V1, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           0           204
  CLUS_2           6           131
  CLUS_3           0            47
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLA MUTATED        0      5      1      0      0
  SLA WILD-TYPE     39     91     43     88     80
D763V2, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           0            39
  CLUS_2           5            91
  CLUS_3           1            43
  CLUS_4           0            88
  CLUS_5           0            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLA MUTATED        0      1      1      1      1
  SLA WILD-TYPE     26     78     72     81     57
D763V3, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           0            26
  CLUS_2           1            78
  CLUS_3           1            72
  CLUS_4           1            81
  CLUS_5           1            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLA MUTATED        0      2      1      1
  SLA WILD-TYPE    127     49     70     68
D763V4, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           0           127
  CLUS_2           2            49
  CLUS_3           1            70
  CLUS_4           1            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLA MUTATED        0      0      5      0      0
  SLA WILD-TYPE     84     85     80     69     47
D763V5, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           0            84
  CLUS_2           0            85
  CLUS_3           5            80
  CLUS_4           0            69
  CLUS_5           0            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLA MUTATED        1      1      0      3
  SLA WILD-TYPE     94     73    121     77
D763V6, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           1            94
  CLUS_2           1            73
  CLUS_3           0           121
  CLUS_4           3            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLA MUTATED        1      1      2      1      1      0
  SLA WILD-TYPE     51     63     70    103     39     59
D763V7, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           1            51
  CLUS_2           1            63
  CLUS_3           2            70
  CLUS_4           1           103
  CLUS_5           1            39
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SLA MUTATED        4      2      0
  SLA WILD-TYPE    213     73     99
D763V8, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           4           213
  CLUS_2           2            73
  CLUS_3           0            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SLA MUTATED        3      0      3
  SLA WILD-TYPE    118    108     69
D763V9, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           3           118
  CLUS_2           0           108
  CLUS_3           3            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLA MUTATED        2      1      1      0      2
  SLA WILD-TYPE     86     65     44     55     45
D763V10, multiclass
        clus
vv       SLA MUTATED SLA WILD-TYPE
  CLUS_1           2            86
  CLUS_2           1            65
  CLUS_3           1            44
  CLUS_4           0            55
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(764) Variable = C9ORF98 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF98 MUTATED        1      9      0      0
  C9ORF98 WILD-TYPE    203    128     47      3
D764V1, multiclass
        clus
vv       C9ORF98 MUTATED C9ORF98 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               9               128
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF98 MUTATED        0      6      0      0      1
  C9ORF98 WILD-TYPE     39     90     44     88     79
D764V2, multiclass
        clus
vv       C9ORF98 MUTATED C9ORF98 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               6                90
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF98 MUTATED        0      3      0      0      4
  C9ORF98 WILD-TYPE     26     76     73     82     54
D764V3, multiclass
        clus
vv       C9ORF98 MUTATED C9ORF98 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               3                76
  CLUS_3               0                73
  CLUS_4               0                82
  CLUS_5               4                54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF98 MUTATED        1      4      2      0
  C9ORF98 WILD-TYPE    126     47     69     69
D764V4, multiclass
        clus
vv       C9ORF98 MUTATED C9ORF98 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               4                47
  CLUS_3               2                69
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF98 MUTATED        1      0      5      4      0
  C9ORF98 WILD-TYPE     83     85     80     65     47
D764V5, multiclass
        clus
vv       C9ORF98 MUTATED C9ORF98 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                85
  CLUS_3               5                80
  CLUS_4               4                65
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF98 MUTATED        5      0      2      3
  C9ORF98 WILD-TYPE     90     74    119     77
D764V6, multiclass
        clus
vv       C9ORF98 MUTATED C9ORF98 WILD-TYPE
  CLUS_1               5                90
  CLUS_2               0                74
  CLUS_3               2               119
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C9ORF98 MUTATED        4      4      0      1      0      1
  C9ORF98 WILD-TYPE     48     60     72    103     40     58
D764V7, multiclass
        clus
vv       C9ORF98 MUTATED C9ORF98 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               4                60
  CLUS_3               0                72
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF98 MUTATED        7      1      2
  C9ORF98 WILD-TYPE    210     74     97
D764V8, multiclass
        clus
vv       C9ORF98 MUTATED C9ORF98 WILD-TYPE
  CLUS_1               7               210
  CLUS_2               1                74
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF98 MUTATED        4      1      1
  C9ORF98 WILD-TYPE    117    107     71
D764V9, multiclass
        clus
vv       C9ORF98 MUTATED C9ORF98 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               1               107
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF98 MUTATED        1      0      1      1      3
  C9ORF98 WILD-TYPE     87     66     44     54     44
D764V10, multiclass
        clus
vv       C9ORF98 MUTATED C9ORF98 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               1                54
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(765) Variable = TOPBP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOPBP1 MUTATED        4     11      1      0
  TOPBP1 WILD-TYPE    200    126     46      3
D765V1, multiclass
        clus
vv       TOPBP1 MUTATED TOPBP1 WILD-TYPE
  CLUS_1              4              200
  CLUS_2             11              126
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOPBP1 MUTATED        0      7      1      2      1
  TOPBP1 WILD-TYPE     39     89     43     86     79
D765V2, multiclass
        clus
vv       TOPBP1 MUTATED TOPBP1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              7               89
  CLUS_3              1               43
  CLUS_4              2               86
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOPBP1 MUTATED        0      9      3      2      2
  TOPBP1 WILD-TYPE     26     70     70     80     56
D765V3, multiclass
        clus
vv       TOPBP1 MUTATED TOPBP1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              9               70
  CLUS_3              3               70
  CLUS_4              2               80
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOPBP1 MUTATED        4      7      4      1
  TOPBP1 WILD-TYPE    123     44     67     68
D765V4, multiclass
        clus
vv       TOPBP1 MUTATED TOPBP1 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              7               44
  CLUS_3              4               67
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOPBP1 MUTATED        0      4      5      2      4
  TOPBP1 WILD-TYPE     84     81     80     67     43
D765V5, multiclass
        clus
vv       TOPBP1 MUTATED TOPBP1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              4               81
  CLUS_3              5               80
  CLUS_4              2               67
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TOPBP1 MUTATED        6      1      4      4
  TOPBP1 WILD-TYPE     89     73    117     76
D765V6, multiclass
        clus
vv       TOPBP1 MUTATED TOPBP1 WILD-TYPE
  CLUS_1              6               89
  CLUS_2              1               73
  CLUS_3              4              117
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TOPBP1 MUTATED        4      7      3      1      0      1
  TOPBP1 WILD-TYPE     48     57     69    103     40     58
D765V7, multiclass
        clus
vv       TOPBP1 MUTATED TOPBP1 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              7               57
  CLUS_3              3               69
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TOPBP1 MUTATED       14      0      2
  TOPBP1 WILD-TYPE    203     75     97
D765V8, multiclass
        clus
vv       TOPBP1 MUTATED TOPBP1 WILD-TYPE
  CLUS_1             14              203
  CLUS_2              0               75
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TOPBP1 MUTATED        7      0      3
  TOPBP1 WILD-TYPE    114    108     69
D765V9, multiclass
        clus
vv       TOPBP1 MUTATED TOPBP1 WILD-TYPE
  CLUS_1              7              114
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TOPBP1 MUTATED        1      0      3      1      5
  TOPBP1 WILD-TYPE     87     66     42     54     42
D765V10, multiclass
        clus
vv       TOPBP1 MUTATED TOPBP1 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              1               54
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(766) Variable = KCNH2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH2 MUTATED        3      8      3      0
  KCNH2 WILD-TYPE    201    129     44      3
D766V1, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             8             129
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH2 MUTATED        2      4      2      1      1
  KCNH2 WILD-TYPE     37     92     42     87     79
D766V2, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             4              92
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH2 MUTATED        1      6      3      0      1
  KCNH2 WILD-TYPE     25     73     70     82     57
D766V3, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             6              73
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH2 MUTATED        3      6      2      0
  KCNH2 WILD-TYPE    124     45     69     69
D766V4, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             6              45
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH2 MUTATED        1      1      6      4      1
  KCNH2 WILD-TYPE     83     84     79     65     46
D766V5, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             6              79
  CLUS_4             4              65
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH2 MUTATED        5      1      2      5
  KCNH2 WILD-TYPE     90     73    119     75
D766V6, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNH2 MUTATED        3      6      2      1      1      1
  KCNH2 WILD-TYPE     49     58     70    103     39     58
D766V7, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             6              58
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH2 MUTATED       12      1      1
  KCNH2 WILD-TYPE    205     74     98
D766V8, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH2 MUTATED        7      1      2
  KCNH2 WILD-TYPE    114    107     70
D766V9, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH2 MUTATED        2      0      2      1      5
  KCNH2 WILD-TYPE     86     66     43     54     42
D766V10, multiclass
        clus
vv       KCNH2 MUTATED KCNH2 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(767) Variable = FAHD2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2A MUTATED        0      8      0      0
  FAHD2A WILD-TYPE    204    129     47      3
D767V1, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              0              204
  CLUS_2              8              129
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAHD2A MUTATED        0      4      1      0      0
  FAHD2A WILD-TYPE     39     92     43     88     80
D767V2, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAHD2A MUTATED        1      1      2      0      2
  FAHD2A WILD-TYPE     25     78     71     82     56
D767V3, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2A MUTATED        1      4      0      1
  FAHD2A WILD-TYPE    126     47     71     68
D767V4, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              1              126
  CLUS_2              4               47
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAHD2A MUTATED        1      3      2      1      0
  FAHD2A WILD-TYPE     83     82     83     68     47
D767V5, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               82
  CLUS_3              2               83
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAHD2A MUTATED        2      2      0      3
  FAHD2A WILD-TYPE     93     72    121     77
D767V6, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAHD2A MUTATED        3      3      0      1      0      1
  FAHD2A WILD-TYPE     49     61     72    103     40     58
D767V7, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              3               49
  CLUS_2              3               61
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAHD2A MUTATED        6      1      1
  FAHD2A WILD-TYPE    211     74     98
D767V8, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              6              211
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAHD2A MUTATED        3      1      1
  FAHD2A WILD-TYPE    118    107     71
D767V9, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              3              118
  CLUS_2              1              107
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAHD2A MUTATED        1      1      0      0      3
  FAHD2A WILD-TYPE     87     65     45     55     44
D767V10, multiclass
        clus
vv       FAHD2A MUTATED FAHD2A WILD-TYPE
  CLUS_1              1               87
  CLUS_2              1               65
  CLUS_3              0               45
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(768) Variable = PTPN3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN3 MUTATED        2     12      0      0
  PTPN3 WILD-TYPE    202    125     47      3
D768V1, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            12             125
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN3 MUTATED        0      8      1      0      2
  PTPN3 WILD-TYPE     39     88     43     88     78
D768V2, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             8              88
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN3 MUTATED        0      5      3      2      2
  PTPN3 WILD-TYPE     26     74     70     80     56
D768V3, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             5              74
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN3 MUTATED        2      4      4      2
  PTPN3 WILD-TYPE    125     47     67     67
D768V4, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             4              67
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN3 MUTATED        0      6      5      3      1
  PTPN3 WILD-TYPE     84     79     80     66     46
D768V5, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             6              79
  CLUS_3             5              80
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN3 MUTATED        7      4      0      4
  PTPN3 WILD-TYPE     88     70    121     76
D768V6, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             4              70
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPN3 MUTATED        2      4      3      3      3      0
  PTPN3 WILD-TYPE     50     60     69    101     37     59
D768V7, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             4              60
  CLUS_3             3              69
  CLUS_4             3             101
  CLUS_5             3              37
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPN3 MUTATED       11      2      2
  PTPN3 WILD-TYPE    206     73     97
D768V8, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPN3 MUTATED        5      4      2
  PTPN3 WILD-TYPE    116    104     70
D768V9, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             4             104
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN3 MUTATED        6      1      1      0      3
  PTPN3 WILD-TYPE     82     65     44     55     44
D768V10, multiclass
        clus
vv       PTPN3 MUTATED PTPN3 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(769) Variable = E2F5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F5 MUTATED        1      2      1      0
  E2F5 WILD-TYPE    203    135     46      3
D769V1, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            2            135
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F5 MUTATED        1      2      0      0      0
  E2F5 WILD-TYPE     38     94     44     88     80
D769V2, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            2             94
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F5 MUTATED        0      1      2      1      0
  E2F5 WILD-TYPE     26     78     71     81     58
D769V3, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F5 MUTATED        0      2      1      1
  E2F5 WILD-TYPE    127     49     70     68
D769V4, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            2             49
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F5 MUTATED        1      1      1      0      1
  E2F5 WILD-TYPE     83     84     84     69     46
D769V5, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            1             84
  CLUS_3            1             84
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F5 MUTATED        1      1      1      1
  E2F5 WILD-TYPE     94     73    120     79
D769V6, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            1             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  E2F5 MUTATED        0      1      1      1      1      0
  E2F5 WILD-TYPE     52     63     71    103     39     59
D769V7, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            1             63
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F5 MUTATED        2      2      0
  E2F5 WILD-TYPE    215     73     99
D769V8, multiclass
        clus
vv       E2F5 MUTATED E2F5 WILD-TYPE
  CLUS_1            2            215
  CLUS_2            2             73
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F5 MUTATED        1      1      0
  E2F5 WILD-TYPE    120    107     72
D769V9, multiclass
[1] "Remove cluster labels:" "E2F5 MUTATED"          
clus
  E2F5 MUTATED E2F5 WILD-TYPE 
             2            299 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-7703     TCGA-BR-7704     TCGA-BR-7707     TCGA-BR-7715 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8060     TCGA-BR-8077     TCGA-BR-8078 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8360 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J5     TCGA-BR-A4J6 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8533     TCGA-CD-8534 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CD-A489     TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CD-A4MI     TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-4449 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CG-5716     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-D7-A6ET 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-A6EV     TCGA-D7-A6EY     TCGA-D7-A6EZ     TCGA-D7-A6F0 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-A6F2     TCGA-D7-A747     TCGA-D7-A748     TCGA-D7-A74A 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-A74B     TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-FP-8210     TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-FP-A9TM     TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7134 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-HF-7136     TCGA-HU-8238     TCGA-HU-8243     TCGA-HU-8602 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-HU-A4GC     TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-HU-A4GJ     TCGA-HU-A4GN     TCGA-HU-A4GT     TCGA-HU-A4GX 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H4     TCGA-HU-A4H5 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-HU-A4H6     TCGA-HU-A4H8     TCGA-HU-A4HB     TCGA-IN-7806 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663     TCGA-IN-A6RI 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-IN-A6RJ     TCGA-IN-A6RL     TCGA-IN-A6RN     TCGA-IN-A6RP 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-IN-A7NR     TCGA-IN-A7NT     TCGA-IN-A7NU     TCGA-IN-AB1V 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-IN-AB1X     TCGA-IP-7968     TCGA-KB-A6F5     TCGA-KB-A6F7 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-KB-A93J     TCGA-MX-A5UG     TCGA-MX-A5UJ     TCGA-MX-A663 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-MX-A666     TCGA-R5-A7O7     TCGA-R5-A7ZE     TCGA-R5-A7ZF 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-R5-A7ZI     TCGA-R5-A7ZR     TCGA-R5-A804     TCGA-R5-A805 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-RD-A7BS     TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-RD-A8N5 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-RD-A8N6     TCGA-RD-A8N9     TCGA-SW-A7EA     TCGA-SW-A7EB 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-VQ-A8DL     TCGA-VQ-A8DU     TCGA-VQ-A8DV     TCGA-VQ-A8E2 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3     TCGA-VQ-A8PE 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ     TCGA-VQ-A91Q 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-A94T 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-VQ-AA64     TCGA-VQ-AA68     TCGA-VQ-AA69     TCGA-VQ-AA6A 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-VQ-AA6B     TCGA-VQ-AA6F     TCGA-VQ-AA6G     TCGA-VQ-AA6I 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-VQ-AA6J     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F5 MUTATED        1      1      0      0      0
  E2F5 WILD-TYPE     87     65     45     55     47
D769V10, multiclass
[1] "Remove cluster labels:" "E2F5 MUTATED"          
clus
  E2F5 MUTATED E2F5 WILD-TYPE 
             2            299 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-7703     TCGA-BR-7704     TCGA-BR-7707     TCGA-BR-7715 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8060     TCGA-BR-8077     TCGA-BR-8078 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8360 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J5     TCGA-BR-A4J6 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8533     TCGA-CD-8534 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CD-A489     TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CD-A4MI     TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-4449 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CG-5716     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-D7-A6ET 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-A6EV     TCGA-D7-A6EY     TCGA-D7-A6EZ     TCGA-D7-A6F0 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-A6F2     TCGA-D7-A747     TCGA-D7-A748     TCGA-D7-A74A 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-D7-A74B     TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-FP-8210     TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-FP-A9TM     TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7134 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-HF-7136     TCGA-HU-8238     TCGA-HU-8243     TCGA-HU-8602 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-HU-A4GC     TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-HU-A4GJ     TCGA-HU-A4GN     TCGA-HU-A4GT     TCGA-HU-A4GX 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H4     TCGA-HU-A4H5 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-HU-A4H6     TCGA-HU-A4H8     TCGA-HU-A4HB     TCGA-IN-7806 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663     TCGA-IN-A6RI 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-IN-A6RJ     TCGA-IN-A6RL     TCGA-IN-A6RN     TCGA-IN-A6RP 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-IN-A7NR     TCGA-IN-A7NT     TCGA-IN-A7NU     TCGA-IN-AB1V 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-IN-AB1X     TCGA-IP-7968     TCGA-KB-A6F5     TCGA-KB-A6F7 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-KB-A93J     TCGA-MX-A5UG     TCGA-MX-A5UJ     TCGA-MX-A663 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-MX-A666     TCGA-R5-A7O7     TCGA-R5-A7ZE     TCGA-R5-A7ZF 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-R5-A7ZI     TCGA-R5-A7ZR     TCGA-R5-A804     TCGA-R5-A805 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-RD-A7BS     TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-RD-A8N5 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-RD-A8N6     TCGA-RD-A8N9     TCGA-SW-A7EA     TCGA-SW-A7EB 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-VQ-A8DL     TCGA-VQ-A8DU     TCGA-VQ-A8DV     TCGA-VQ-A8E2 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3     TCGA-VQ-A8PE 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ     TCGA-VQ-A91Q 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-A94T 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-VQ-AA64     TCGA-VQ-AA68     TCGA-VQ-AA69     TCGA-VQ-AA6A 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-VQ-AA6B     TCGA-VQ-AA6F     TCGA-VQ-AA6G     TCGA-VQ-AA6I 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 
    TCGA-VQ-AA6J     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"E2F5 WILD-TYPE" "E2F5 WILD-TYPE" "E2F5 WILD-TYPE" 

Clustering(770) Variable = PABPC4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PABPC4 MUTATED        1      8      0      0
  PABPC4 WILD-TYPE    203    129     47      3
D770V1, multiclass
        clus
vv       PABPC4 MUTATED PABPC4 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              8              129
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PABPC4 MUTATED        0      4      2      0      1
  PABPC4 WILD-TYPE     39     92     42     88     79
D770V2, multiclass
        clus
vv       PABPC4 MUTATED PABPC4 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PABPC4 MUTATED        2      4      1      0      1
  PABPC4 WILD-TYPE     24     75     72     82     57
D770V3, multiclass
        clus
vv       PABPC4 MUTATED PABPC4 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              4               75
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PABPC4 MUTATED        3      3      1      1
  PABPC4 WILD-TYPE    124     48     70     68
D770V4, multiclass
        clus
vv       PABPC4 MUTATED PABPC4 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              3               48
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PABPC4 MUTATED        1      1      5      0      1
  PABPC4 WILD-TYPE     83     84     80     69     46
D770V5, multiclass
        clus
vv       PABPC4 MUTATED PABPC4 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              5               80
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PABPC4 MUTATED        3      1      2      2
  PABPC4 WILD-TYPE     92     73    119     78
D770V6, multiclass
        clus
vv       PABPC4 MUTATED PABPC4 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PABPC4 MUTATED        3      3      2      0      0      1
  PABPC4 WILD-TYPE     49     61     70    104     40     58
D770V7, multiclass
        clus
vv       PABPC4 MUTATED PABPC4 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              3               61
  CLUS_3              2               70
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC4 MUTATED        8      0      1
  PABPC4 WILD-TYPE    209     75     98
D770V8, multiclass
        clus
vv       PABPC4 MUTATED PABPC4 WILD-TYPE
  CLUS_1              8              209
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PABPC4 MUTATED        3      0      3
  PABPC4 WILD-TYPE    118    108     69
D770V9, multiclass
        clus
vv       PABPC4 MUTATED PABPC4 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PABPC4 MUTATED        2      0      1      0      3
  PABPC4 WILD-TYPE     86     66     44     55     44
D770V10, multiclass
        clus
vv       PABPC4 MUTATED PABPC4 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(771) Variable = ERV3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERV3 MUTATED        2      2      0      0
  ERV3 WILD-TYPE    202    135     47      3
D771V1, multiclass
        clus
vv       ERV3 MUTATED ERV3 WILD-TYPE
  CLUS_1            2            202
  CLUS_2            2            135
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERV3 MUTATED        0      3      0      1      0
  ERV3 WILD-TYPE     39     93     44     87     80
D771V2, multiclass
        clus
vv       ERV3 MUTATED ERV3 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            0             44
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERV3 MUTATED        0      1      0      2      1
  ERV3 WILD-TYPE     26     78     73     80     57
D771V3, multiclass
        clus
vv       ERV3 MUTATED ERV3 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            0             73
  CLUS_4            2             80
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERV3 MUTATED        1      1      0      2
  ERV3 WILD-TYPE    126     50     71     67
D771V4, multiclass
        clus
vv       ERV3 MUTATED ERV3 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            1             50
  CLUS_3            0             71
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERV3 MUTATED        2      1      2      0      0
  ERV3 WILD-TYPE     82     84     83     69     47
D771V5, multiclass
        clus
vv       ERV3 MUTATED ERV3 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            1             84
  CLUS_3            2             83
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERV3 MUTATED        0      2      2      1
  ERV3 WILD-TYPE     95     72    119     79
D771V6, multiclass
        clus
vv       ERV3 MUTATED ERV3 WILD-TYPE
  CLUS_1            0             95
  CLUS_2            2             72
  CLUS_3            2            119
  CLUS_4            1             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERV3 MUTATED        1      0      0      1      1      2
  ERV3 WILD-TYPE     51     64     72    103     39     57
D771V7, multiclass
        clus
vv       ERV3 MUTATED ERV3 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            0             64
  CLUS_3            0             72
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERV3 MUTATED        1      2      2
  ERV3 WILD-TYPE    216     73     97
D771V8, multiclass
        clus
vv       ERV3 MUTATED ERV3 WILD-TYPE
  CLUS_1            1            216
  CLUS_2            2             73
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERV3 MUTATED        2      0      2
  ERV3 WILD-TYPE    119    108     70
D771V9, multiclass
        clus
vv       ERV3 MUTATED ERV3 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERV3 MUTATED        1      0      0      2      1
  ERV3 WILD-TYPE     87     66     45     53     46
D771V10, multiclass
        clus
vv       ERV3 MUTATED ERV3 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            2             53
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(772) Variable = SLC39A8 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC39A8 MUTATED        1      6      0      0
  SLC39A8 WILD-TYPE    203    131     47      3
D772V1, multiclass
        clus
vv       SLC39A8 MUTATED SLC39A8 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               6               131
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC39A8 MUTATED        0      5      0      1      0
  SLC39A8 WILD-TYPE     39     91     44     87     80
D772V2, multiclass
        clus
vv       SLC39A8 MUTATED SLC39A8 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               5                91
  CLUS_3               0                44
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC39A8 MUTATED        0      2      4      0      1
  SLC39A8 WILD-TYPE     26     77     69     82     57
D772V3, multiclass
        clus
vv       SLC39A8 MUTATED SLC39A8 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               4                69
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC39A8 MUTATED        2      4      1      0
  SLC39A8 WILD-TYPE    125     47     70     69
D772V4, multiclass
        clus
vv       SLC39A8 MUTATED SLC39A8 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               4                47
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC39A8 MUTATED        1      0      2      1      1
  SLC39A8 WILD-TYPE     83     85     83     68     46
D772V5, multiclass
        clus
vv       SLC39A8 MUTATED SLC39A8 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                85
  CLUS_3               2                83
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC39A8 MUTATED        2      0      1      2
  SLC39A8 WILD-TYPE     93     74    120     78
D772V6, multiclass
        clus
vv       SLC39A8 MUTATED SLC39A8 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               0                74
  CLUS_3               1               120
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC39A8 MUTATED        2      3      0      0      1      1
  SLC39A8 WILD-TYPE     50     61     72    104     39     58
D772V7, multiclass
        clus
vv       SLC39A8 MUTATED SLC39A8 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               3                61
  CLUS_3               0                72
  CLUS_4               0               104
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A8 MUTATED        6      0      1
  SLC39A8 WILD-TYPE    211     75     98
D772V8, multiclass
        clus
vv       SLC39A8 MUTATED SLC39A8 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC39A8 MUTATED        4      0      2
  SLC39A8 WILD-TYPE    117    108     70
D772V9, multiclass
        clus
vv       SLC39A8 MUTATED SLC39A8 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               0               108
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC39A8 MUTATED        0      0      2      1      3
  SLC39A8 WILD-TYPE     88     66     43     54     44
D772V10, multiclass
        clus
vv       SLC39A8 MUTATED SLC39A8 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               0                66
  CLUS_3               2                43
  CLUS_4               1                54
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(773) Variable = RIMKLB MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMKLB MUTATED        1     10      0      0
  RIMKLB WILD-TYPE    203    127     47      3
D773V1, multiclass
        clus
vv       RIMKLB MUTATED RIMKLB WILD-TYPE
  CLUS_1              1              203
  CLUS_2             10              127
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIMKLB MUTATED        0      7      1      0      0
  RIMKLB WILD-TYPE     39     89     43     88     80
D773V2, multiclass
        clus
vv       RIMKLB MUTATED RIMKLB WILD-TYPE
  CLUS_1              0               39
  CLUS_2              7               89
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIMKLB MUTATED        0      5      4      1      0
  RIMKLB WILD-TYPE     26     74     69     81     58
D773V3, multiclass
        clus
vv       RIMKLB MUTATED RIMKLB WILD-TYPE
  CLUS_1              0               26
  CLUS_2              5               74
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMKLB MUTATED        0      6      2      2
  RIMKLB WILD-TYPE    127     45     69     67
D773V4, multiclass
        clus
vv       RIMKLB MUTATED RIMKLB WILD-TYPE
  CLUS_1              0              127
  CLUS_2              6               45
  CLUS_3              2               69
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIMKLB MUTATED        0      1      8      1      0
  RIMKLB WILD-TYPE     84     84     77     68     47
D773V5, multiclass
        clus
vv       RIMKLB MUTATED RIMKLB WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              8               77
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RIMKLB MUTATED        3      4      0      3
  RIMKLB WILD-TYPE     92     70    121     77
D773V6, multiclass
        clus
vv       RIMKLB MUTATED RIMKLB WILD-TYPE
  CLUS_1              3               92
  CLUS_2              4               70
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RIMKLB MUTATED        3      5      1      0      2      0
  RIMKLB WILD-TYPE     49     59     71    104     38     59
D773V7, multiclass
        clus
vv       RIMKLB MUTATED RIMKLB WILD-TYPE
  CLUS_1              3               49
  CLUS_2              5               59
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RIMKLB MUTATED        8      1      2
  RIMKLB WILD-TYPE    209     74     97
D773V8, multiclass
        clus
vv       RIMKLB MUTATED RIMKLB WILD-TYPE
  CLUS_1              8              209
  CLUS_2              1               74
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RIMKLB MUTATED        2      0      4
  RIMKLB WILD-TYPE    119    108     68
D773V9, multiclass
        clus
vv       RIMKLB MUTATED RIMKLB WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RIMKLB MUTATED        2      0      2      0      2
  RIMKLB WILD-TYPE     86     66     43     55     45
D773V10, multiclass
        clus
vv       RIMKLB MUTATED RIMKLB WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(774) Variable = UGT1A4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A4 MUTATED        3      6      1      0
  UGT1A4 WILD-TYPE    201    131     46      3
D774V1, multiclass
        clus
vv       UGT1A4 MUTATED UGT1A4 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              6              131
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGT1A4 MUTATED        1      6      0      2      0
  UGT1A4 WILD-TYPE     38     90     44     86     80
D774V2, multiclass
        clus
vv       UGT1A4 MUTATED UGT1A4 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               90
  CLUS_3              0               44
  CLUS_4              2               86
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGT1A4 MUTATED        1      4      3      1      1
  UGT1A4 WILD-TYPE     25     75     70     81     57
D774V3, multiclass
        clus
vv       UGT1A4 MUTATED UGT1A4 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              4               75
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A4 MUTATED        1      5      2      2
  UGT1A4 WILD-TYPE    126     46     69     67
D774V4, multiclass
        clus
vv       UGT1A4 MUTATED UGT1A4 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              5               46
  CLUS_3              2               69
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGT1A4 MUTATED        2      1      5      0      1
  UGT1A4 WILD-TYPE     82     84     80     69     46
D774V5, multiclass
        clus
vv       UGT1A4 MUTATED UGT1A4 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              1               84
  CLUS_3              5               80
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT1A4 MUTATED        2      2      2      3
  UGT1A4 WILD-TYPE     93     72    119     77
D774V6, multiclass
        clus
vv       UGT1A4 MUTATED UGT1A4 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              2              119
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UGT1A4 MUTATED        4      2      1      1      1      1
  UGT1A4 WILD-TYPE     48     62     71    103     39     58
D774V7, multiclass
        clus
vv       UGT1A4 MUTATED UGT1A4 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT1A4 MUTATED        7      0      3
  UGT1A4 WILD-TYPE    210     75     96
D774V8, multiclass
        clus
vv       UGT1A4 MUTATED UGT1A4 WILD-TYPE
  CLUS_1              7              210
  CLUS_2              0               75
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT1A4 MUTATED        6      1      1
  UGT1A4 WILD-TYPE    115    107     71
D774V9, multiclass
        clus
vv       UGT1A4 MUTATED UGT1A4 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              1              107
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGT1A4 MUTATED        2      0      1      2      3
  UGT1A4 WILD-TYPE     86     66     44     53     44
D774V10, multiclass
        clus
vv       UGT1A4 MUTATED UGT1A4 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              2               53
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(775) Variable = PLA2G15 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G15 MUTATED        1      9      0      0
  PLA2G15 WILD-TYPE    203    128     47      3
D775V1, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               9               128
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLA2G15 MUTATED        0      5      1      1      0
  PLA2G15 WILD-TYPE     39     91     43     87     80
D775V2, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               5                91
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLA2G15 MUTATED        1      5      2      0      1
  PLA2G15 WILD-TYPE     25     74     71     82     57
D775V3, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               5                74
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G15 MUTATED        2      6      1      0
  PLA2G15 WILD-TYPE    125     45     70     69
D775V4, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               6                45
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLA2G15 MUTATED        1      1      3      2      1
  PLA2G15 WILD-TYPE     83     84     82     67     46
D775V5, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               3                82
  CLUS_4               2                67
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLA2G15 MUTATED        3      1      1      3
  PLA2G15 WILD-TYPE     92     73    120     77
D775V6, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLA2G15 MUTATED        2      4      2      1      0      1
  PLA2G15 WILD-TYPE     50     60     70    103     40     58
D775V7, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               4                60
  CLUS_3               2                70
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G15 MUTATED        8      1      1
  PLA2G15 WILD-TYPE    209     74     98
D775V8, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               8               209
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLA2G15 MUTATED        2      1      3
  PLA2G15 WILD-TYPE    119    107     69
D775V9, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               1               107
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLA2G15 MUTATED        1      1      2      0      2
  PLA2G15 WILD-TYPE     87     65     43     55     45
D775V10, multiclass
        clus
vv       PLA2G15 MUTATED PLA2G15 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(776) Variable = MNS1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MNS1 MUTATED        2      3      3      0
  MNS1 WILD-TYPE    202    134     44      3
D776V1, multiclass
        clus
vv       MNS1 MUTATED MNS1 WILD-TYPE
  CLUS_1            2            202
  CLUS_2            3            134
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MNS1 MUTATED        2      2      3      0      1
  MNS1 WILD-TYPE     37     94     41     88     79
D776V2, multiclass
        clus
vv       MNS1 MUTATED MNS1 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            2             94
  CLUS_3            3             41
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MNS1 MUTATED        0      2      2      1      2
  MNS1 WILD-TYPE     26     77     71     81     56
D776V3, multiclass
        clus
vv       MNS1 MUTATED MNS1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MNS1 MUTATED        3      1      3      0
  MNS1 WILD-TYPE    124     50     68     69
D776V4, multiclass
        clus
vv       MNS1 MUTATED MNS1 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            1             50
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MNS1 MUTATED        1      2      5      0      0
  MNS1 WILD-TYPE     83     83     80     69     47
D776V5, multiclass
        clus
vv       MNS1 MUTATED MNS1 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            2             83
  CLUS_3            5             80
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MNS1 MUTATED        1      1      2      4
  MNS1 WILD-TYPE     94     73    119     76
D776V6, multiclass
        clus
vv       MNS1 MUTATED MNS1 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MNS1 MUTATED        3      3      0      2      0      0
  MNS1 WILD-TYPE     49     61     72    102     40     59
D776V7, multiclass
        clus
vv       MNS1 MUTATED MNS1 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            3             61
  CLUS_3            0             72
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MNS1 MUTATED        7      1      0
  MNS1 WILD-TYPE    210     74     99
D776V8, multiclass
        clus
vv       MNS1 MUTATED MNS1 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MNS1 MUTATED        3      2      2
  MNS1 WILD-TYPE    118    106     70
D776V9, multiclass
        clus
vv       MNS1 MUTATED MNS1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            2            106
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MNS1 MUTATED        4      0      2      0      1
  MNS1 WILD-TYPE     84     66     43     55     46
D776V10, multiclass
        clus
vv       MNS1 MUTATED MNS1 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(777) Variable = ZNF800 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF800 MUTATED        1     10      1      0
  ZNF800 WILD-TYPE    203    127     46      3
D777V1, multiclass
        clus
vv       ZNF800 MUTATED ZNF800 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             10              127
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF800 MUTATED        0      4      1      1      1
  ZNF800 WILD-TYPE     39     92     43     87     79
D777V2, multiclass
        clus
vv       ZNF800 MUTATED ZNF800 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF800 MUTATED        1      4      2      1      2
  ZNF800 WILD-TYPE     25     75     71     81     56
D777V3, multiclass
        clus
vv       ZNF800 MUTATED ZNF800 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              4               75
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF800 MUTATED        3      3      3      1
  ZNF800 WILD-TYPE    124     48     68     68
D777V4, multiclass
        clus
vv       ZNF800 MUTATED ZNF800 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              3               48
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF800 MUTATED        1      5      2      2      1
  ZNF800 WILD-TYPE     83     80     83     67     46
D777V5, multiclass
        clus
vv       ZNF800 MUTATED ZNF800 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              5               80
  CLUS_3              2               83
  CLUS_4              2               67
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF800 MUTATED        4      2      2      3
  ZNF800 WILD-TYPE     91     72    119     77
D777V6, multiclass
        clus
vv       ZNF800 MUTATED ZNF800 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              2               72
  CLUS_3              2              119
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF800 MUTATED        2      7      1      0      1      1
  ZNF800 WILD-TYPE     50     57     71    104     39     58
D777V7, multiclass
        clus
vv       ZNF800 MUTATED ZNF800 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              7               57
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF800 MUTATED        9      1      2
  ZNF800 WILD-TYPE    208     74     97
D777V8, multiclass
        clus
vv       ZNF800 MUTATED ZNF800 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              1               74
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF800 MUTATED        3      1      2
  ZNF800 WILD-TYPE    118    107     70
D777V9, multiclass
        clus
vv       ZNF800 MUTATED ZNF800 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF800 MUTATED        1      0      2      1      2
  ZNF800 WILD-TYPE     87     66     43     54     45
D777V10, multiclass
        clus
vv       ZNF800 MUTATED ZNF800 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(778) Variable = PHACTR2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR2 MUTATED        4     10      1      0
  PHACTR2 WILD-TYPE    200    127     46      3
D778V1, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               4               200
  CLUS_2              10               127
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR2 MUTATED        1     11      0      2      0
  PHACTR2 WILD-TYPE     38     85     44     86     80
D778V2, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               1                38
  CLUS_2              11                85
  CLUS_3               0                44
  CLUS_4               2                86
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR2 MUTATED        2      3      4      2      2
  PHACTR2 WILD-TYPE     24     76     69     80     56
D778V3, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               3                76
  CLUS_3               4                69
  CLUS_4               2                80
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR2 MUTATED        2      6      3      2
  PHACTR2 WILD-TYPE    125     45     68     67
D778V4, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               6                45
  CLUS_3               3                68
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR2 MUTATED        3      2      9      0      1
  PHACTR2 WILD-TYPE     81     83     76     69     46
D778V5, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               3                81
  CLUS_2               2                83
  CLUS_3               9                76
  CLUS_4               0                69
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHACTR2 MUTATED        3      3      2      7
  PHACTR2 WILD-TYPE     92     71    119     73
D778V6, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               3                71
  CLUS_3               2               119
  CLUS_4               7                73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHACTR2 MUTATED        3      1      4      4      1      2
  PHACTR2 WILD-TYPE     49     63     68    100     39     57
D778V7, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               1                63
  CLUS_3               4                68
  CLUS_4               4               100
  CLUS_5               1                39
  CLUS_6               2                57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR2 MUTATED        9      3      3
  PHACTR2 WILD-TYPE    208     72     96
D778V8, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               9               208
  CLUS_2               3                72
  CLUS_3               3                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PHACTR2 MUTATED        5      4      2
  PHACTR2 WILD-TYPE    116    104     70
D778V9, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               5               116
  CLUS_2               4               104
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHACTR2 MUTATED        3      2      1      2      3
  PHACTR2 WILD-TYPE     85     64     44     53     44
D778V10, multiclass
        clus
vv       PHACTR2 MUTATED PHACTR2 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               2                64
  CLUS_3               1                44
  CLUS_4               2                53
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(779) Variable = PLK2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLK2 MUTATED        1      5      2      0
  PLK2 WILD-TYPE    203    132     45      3
D779V1, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            5            132
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLK2 MUTATED        2      5      0      0      0
  PLK2 WILD-TYPE     37     91     44     88     80
D779V2, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            5             91
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLK2 MUTATED        0      3      0      0      3
  PLK2 WILD-TYPE     26     76     73     82     55
D779V3, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            0             73
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLK2 MUTATED        0      3      3      0
  PLK2 WILD-TYPE    127     48     68     69
D779V4, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            3             48
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLK2 MUTATED        0      2      5      0      1
  PLK2 WILD-TYPE     84     83     80     69     46
D779V5, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            5             80
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLK2 MUTATED        1      1      0      6
  PLK2 WILD-TYPE     94     73    121     74
D779V6, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLK2 MUTATED        4      1      2      0      1      0
  PLK2 WILD-TYPE     48     63     70    104     39     59
D779V7, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            1             63
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLK2 MUTATED        7      0      1
  PLK2 WILD-TYPE    210     75     98
D779V8, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLK2 MUTATED        4      1      1
  PLK2 WILD-TYPE    117    107     71
D779V9, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            1            107
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLK2 MUTATED        3      0      0      0      3
  PLK2 WILD-TYPE     85     66     45     55     44
D779V10, multiclass
        clus
vv       PLK2 MUTATED PLK2 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(780) Variable = SERPINB7 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB7 MUTATED        3      1      1      1
  SERPINB7 WILD-TYPE    201    136     46      2
D780V1, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                3                201
  CLUS_2                1                136
  CLUS_3                1                 46
  CLUS_4                1                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB7 MUTATED        1      3      0      1      0
  SERPINB7 WILD-TYPE     38     93     44     87     80
D780V2, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                3                 93
  CLUS_3                0                 44
  CLUS_4                1                 87
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB7 MUTATED        0      1      1      1      3
  SERPINB7 WILD-TYPE     26     78     72     81     55
D780V3, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                1                 78
  CLUS_3                1                 72
  CLUS_4                1                 81
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB7 MUTATED        1      2      1      2
  SERPINB7 WILD-TYPE    126     49     70     67
D780V4, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                1                126
  CLUS_2                2                 49
  CLUS_3                1                 70
  CLUS_4                2                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB7 MUTATED        1      0      2      1      1
  SERPINB7 WILD-TYPE     83     85     83     68     46
D780V5, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                0                 85
  CLUS_3                2                 83
  CLUS_4                1                 68
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB7 MUTATED        2      0      1      2
  SERPINB7 WILD-TYPE     93     74    120     78
D780V6, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                0                 74
  CLUS_3                1                120
  CLUS_4                2                 78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERPINB7 MUTATED        0      2      2      1      0      1
  SERPINB7 WILD-TYPE     52     62     70    103     40     58
D780V7, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                0                 52
  CLUS_2                2                 62
  CLUS_3                2                 70
  CLUS_4                1                103
  CLUS_5                0                 40
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINB7 MUTATED        4      1      1
  SERPINB7 WILD-TYPE    213     74     98
D780V8, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                4                213
  CLUS_2                1                 74
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINB7 MUTATED        2      1      2
  SERPINB7 WILD-TYPE    119    107     70
D780V9, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                2                119
  CLUS_2                1                107
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB7 MUTATED        2      0      1      0      2
  SERPINB7 WILD-TYPE     86     66     44     55     45
D780V10, multiclass
        clus
vv       SERPINB7 MUTATED SERPINB7 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                0                 66
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(781) Variable = ZNF295 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF295 MUTATED        1     16      1      0
  ZNF295 WILD-TYPE    203    121     46      3
D781V1, multiclass
        clus
vv       ZNF295 MUTATED ZNF295 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             16              121
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF295 MUTATED        0      9      3      1      0
  ZNF295 WILD-TYPE     39     87     41     87     80
D781V2, multiclass
        clus
vv       ZNF295 MUTATED ZNF295 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              9               87
  CLUS_3              3               41
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF295 MUTATED        2      6      3      1      5
  ZNF295 WILD-TYPE     24     73     70     81     53
D781V3, multiclass
        clus
vv       ZNF295 MUTATED ZNF295 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              6               73
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              5               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF295 MUTATED        4      7      4      2
  ZNF295 WILD-TYPE    123     44     67     67
D781V4, multiclass
        clus
vv       ZNF295 MUTATED ZNF295 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              7               44
  CLUS_3              4               67
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF295 MUTATED        1      5      5      2      2
  ZNF295 WILD-TYPE     83     80     80     67     45
D781V5, multiclass
        clus
vv       ZNF295 MUTATED ZNF295 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              5               80
  CLUS_3              5               80
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF295 MUTATED        5      5      0      5
  ZNF295 WILD-TYPE     90     69    121     75
D781V6, multiclass
        clus
vv       ZNF295 MUTATED ZNF295 WILD-TYPE
  CLUS_1              5               90
  CLUS_2              5               69
  CLUS_3              0              121
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF295 MUTATED        4      8      1      3      1      1
  ZNF295 WILD-TYPE     48     56     71    101     39     58
D781V7, multiclass
        clus
vv       ZNF295 MUTATED ZNF295 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              8               56
  CLUS_3              1               71
  CLUS_4              3              101
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF295 MUTATED       13      3      2
  ZNF295 WILD-TYPE    204     72     97
D781V8, multiclass
        clus
vv       ZNF295 MUTATED ZNF295 WILD-TYPE
  CLUS_1             13              204
  CLUS_2              3               72
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF295 MUTATED        5      1      7
  ZNF295 WILD-TYPE    116    107     65
D781V9, multiclass
        clus
vv       ZNF295 MUTATED ZNF295 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              1              107
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF295 MUTATED        3      2      4      0      4
  ZNF295 WILD-TYPE     85     64     41     55     43
D781V10, multiclass
        clus
vv       ZNF295 MUTATED ZNF295 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              2               64
  CLUS_3              4               41
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(782) Variable = RINT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RINT1 MUTATED        2      4      1      0
  RINT1 WILD-TYPE    202    133     46      3
D782V1, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             4             133
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RINT1 MUTATED        1      4      1      0      1
  RINT1 WILD-TYPE     38     92     43     88     79
D782V2, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RINT1 MUTATED        1      0      2      0      3
  RINT1 WILD-TYPE     25     79     71     82     55
D782V3, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              79
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RINT1 MUTATED        3      3      0      0
  RINT1 WILD-TYPE    124     48     71     69
D782V4, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             3              48
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RINT1 MUTATED        0      1      4      1      1
  RINT1 WILD-TYPE     84     84     81     68     46
D782V5, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RINT1 MUTATED        1      0      1      5
  RINT1 WILD-TYPE     94     74    120     75
D782V6, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RINT1 MUTATED        3      3      1      0      0      0
  RINT1 WILD-TYPE     49     61     71    104     40     59
D782V7, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RINT1 MUTATED        7      0      0
  RINT1 WILD-TYPE    210     75     99
D782V8, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RINT1 MUTATED        2      0      4
  RINT1 WILD-TYPE    119    108     68
D782V9, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RINT1 MUTATED        2      0      2      0      2
  RINT1 WILD-TYPE     86     66     43     55     45
D782V10, multiclass
        clus
vv       RINT1 MUTATED RINT1 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(783) Variable = PDS5B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDS5B MUTATED        3     15      1      0
  PDS5B WILD-TYPE    201    122     46      3
D783V1, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             3             201
  CLUS_2            15             122
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDS5B MUTATED        1     11      1      0      2
  PDS5B WILD-TYPE     38     85     43     88     78
D783V2, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             1              38
  CLUS_2            11              85
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDS5B MUTATED        1      5      5      2      3
  PDS5B WILD-TYPE     25     74     68     80     55
D783V3, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             5              68
  CLUS_4             2              80
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDS5B MUTATED        2     10      2      2
  PDS5B WILD-TYPE    125     41     69     67
D783V4, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             2             125
  CLUS_2            10              41
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDS5B MUTATED        1      3     10      3      0
  PDS5B WILD-TYPE     83     82     75     66     47
D783V5, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3            10              75
  CLUS_4             3              66
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PDS5B MUTATED        4      4      1      8
  PDS5B WILD-TYPE     91     70    120     72
D783V6, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             4              91
  CLUS_2             4              70
  CLUS_3             1             120
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PDS5B MUTATED        6      4      5      2      1      1
  PDS5B WILD-TYPE     46     60     67    102     39     58
D783V7, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             6              46
  CLUS_2             4              60
  CLUS_3             5              67
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDS5B MUTATED       15      3      1
  PDS5B WILD-TYPE    202     72     98
D783V8, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1            15             202
  CLUS_2             3              72
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PDS5B MUTATED        6      1      5
  PDS5B WILD-TYPE    115    107     67
D783V9, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PDS5B MUTATED        3      1      2      0      6
  PDS5B WILD-TYPE     85     65     43     55     41
D783V10, multiclass
        clus
vv       PDS5B MUTATED PDS5B WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(784) Variable = YBX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YBX2 MUTATED        1      4      1      0
  YBX2 WILD-TYPE    203    133     46      3
D784V1, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            4            133
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YBX2 MUTATED        1      4      0      0      0
  YBX2 WILD-TYPE     38     92     44     88     80
D784V2, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            4             92
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YBX2 MUTATED        0      1      4      0      1
  YBX2 WILD-TYPE     26     78     69     82     57
D784V3, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            4             69
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YBX2 MUTATED        3      2      1      0
  YBX2 WILD-TYPE    124     49     70     69
D784V4, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            2             49
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YBX2 MUTATED        0      0      2      1      3
  YBX2 WILD-TYPE     84     85     83     68     44
D784V5, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            2             83
  CLUS_4            1             68
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YBX2 MUTATED        3      0      0      3
  YBX2 WILD-TYPE     92     74    121     77
D784V6, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            0             74
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  YBX2 MUTATED        2      2      2      0      0      0
  YBX2 WILD-TYPE     50     62     70    104     40     59
D784V7, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            2             62
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  YBX2 MUTATED        6      0      0
  YBX2 WILD-TYPE    211     75     99
D784V8, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            6            211
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  YBX2 MUTATED        3      0      2
  YBX2 WILD-TYPE    118    108     70
D784V9, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YBX2 MUTATED        1      0      1      0      3
  YBX2 WILD-TYPE     87     66     44     55     44
D784V10, multiclass
        clus
vv       YBX2 MUTATED YBX2 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(785) Variable = CNOT6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT6 MUTATED        0      6      2      0
  CNOT6 WILD-TYPE    204    131     45      3
D785V1, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             6             131
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNOT6 MUTATED        2      1      2      0      1
  CNOT6 WILD-TYPE     37     95     42     88     79
D785V2, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             1              95
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNOT6 MUTATED        1      3      3      0      1
  CNOT6 WILD-TYPE     25     76     70     82     57
D785V3, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT6 MUTATED        3      4      1      0
  CNOT6 WILD-TYPE    124     47     70     69
D785V4, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNOT6 MUTATED        0      1      4      1      1
  CNOT6 WILD-TYPE     84     84     81     68     46
D785V5, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNOT6 MUTATED        2      2      1      2
  CNOT6 WILD-TYPE     93     72    120     78
D785V6, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNOT6 MUTATED        0      4      1      3      0      0
  CNOT6 WILD-TYPE     52     60     71    101     40     59
D785V7, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             4              60
  CLUS_3             1              71
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT6 MUTATED        6      2      0
  CNOT6 WILD-TYPE    211     73     99
D785V8, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             2              73
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNOT6 MUTATED        1      1      3
  CNOT6 WILD-TYPE    120    107     69
D785V9, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNOT6 MUTATED        1      2      2      0      0
  CNOT6 WILD-TYPE     87     64     43     55     47
D785V10, multiclass
        clus
vv       CNOT6 MUTATED CNOT6 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             2              64
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(786) Variable = ESRP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESRP1 MUTATED        2      5      2      0
  ESRP1 WILD-TYPE    202    132     45      3
D786V1, multiclass
        clus
vv       ESRP1 MUTATED ESRP1 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             5             132
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESRP1 MUTATED        0      3      1      1      1
  ESRP1 WILD-TYPE     39     93     43     87     79
D786V2, multiclass
        clus
vv       ESRP1 MUTATED ESRP1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESRP1 MUTATED        1      4      2      0      2
  ESRP1 WILD-TYPE     25     75     71     82     56
D786V3, multiclass
        clus
vv       ESRP1 MUTATED ESRP1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESRP1 MUTATED        1      4      3      1
  ESRP1 WILD-TYPE    126     47     68     68
D786V4, multiclass
        clus
vv       ESRP1 MUTATED ESRP1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESRP1 MUTATED        0      1      5      0      2
  ESRP1 WILD-TYPE     84     84     80     69     45
D786V5, multiclass
        clus
vv       ESRP1 MUTATED ESRP1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESRP1 MUTATED        1      1      2      4
  ESRP1 WILD-TYPE     94     73    119     76
D786V6, multiclass
        clus
vv       ESRP1 MUTATED ESRP1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ESRP1 MUTATED        2      5      2      0      0      0
  ESRP1 WILD-TYPE     50     59     70    104     40     59
D786V7, multiclass
        clus
vv       ESRP1 MUTATED ESRP1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             5              59
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESRP1 MUTATED        9      0      0
  ESRP1 WILD-TYPE    208     75     99
D786V8, multiclass
        clus
vv       ESRP1 MUTATED ESRP1 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESRP1 MUTATED        1      1      3
  ESRP1 WILD-TYPE    120    107     69
D786V9, multiclass
        clus
vv       ESRP1 MUTATED ESRP1 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESRP1 MUTATED        3      0      1      0      1
  ESRP1 WILD-TYPE     85     66     44     55     46
D786V10, multiclass
        clus
vv       ESRP1 MUTATED ESRP1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(787) Variable = LCE1A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCE1A MUTATED        4      0      0      0
  LCE1A WILD-TYPE    200    137     47      3
D787V1, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             4             200
  CLUS_2             0             137
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LCE1A MUTATED        1      1      0      2      0
  LCE1A WILD-TYPE     38     95     44     86     80
D787V2, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             1              38
  CLUS_2             1              95
  CLUS_3             0              44
  CLUS_4             2              86
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LCE1A MUTATED        0      0      0      3      1
  LCE1A WILD-TYPE     26     79     73     79     57
D787V3, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              79
  CLUS_3             0              73
  CLUS_4             3              79
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCE1A MUTATED        1      0      2      1
  LCE1A WILD-TYPE    126     51     69     68
D787V4, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             1             126
  CLUS_2             0              51
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LCE1A MUTATED        1      1      1      1      0
  LCE1A WILD-TYPE     83     84     84     68     47
D787V5, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             1              84
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LCE1A MUTATED        1      2      1      0
  LCE1A WILD-TYPE     94     72    120     80
D787V6, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             0              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LCE1A MUTATED        0      0      0      2      0      2
  LCE1A WILD-TYPE     52     64     72    102     40     57
D787V7, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             0              52
  CLUS_2             0              64
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LCE1A MUTATED        0      0      4
  LCE1A WILD-TYPE    217     75     95
D787V8, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             0             217
  CLUS_2             0              75
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LCE1A MUTATED        2      2      0
  LCE1A WILD-TYPE    119    106     72
D787V9, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             2             119
  CLUS_2             2             106
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LCE1A MUTATED        0      1      0      2      1
  LCE1A WILD-TYPE     88     65     45     53     46
D787V10, multiclass
        clus
vv       LCE1A MUTATED LCE1A WILD-TYPE
  CLUS_1             0              88
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             2              53
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(788) Variable = PPARGC1B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARGC1B MUTATED        1      9      0      0
  PPARGC1B WILD-TYPE    203    128     47      3
D788V1, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                1                203
  CLUS_2                9                128
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARGC1B MUTATED        0      6      2      0      0
  PPARGC1B WILD-TYPE     39     90     42     88     80
D788V2, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                6                 90
  CLUS_3                2                 42
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARGC1B MUTATED        1      5      1      0      1
  PPARGC1B WILD-TYPE     25     74     72     82     57
D788V3, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                5                 74
  CLUS_3                1                 72
  CLUS_4                0                 82
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARGC1B MUTATED        1      3      4      0
  PPARGC1B WILD-TYPE    126     48     67     69
D788V4, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                1                126
  CLUS_2                3                 48
  CLUS_3                4                 67
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARGC1B MUTATED        1      2      7      0      0
  PPARGC1B WILD-TYPE     83     83     78     69     47
D788V5, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 83
  CLUS_3                7                 78
  CLUS_4                0                 69
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARGC1B MUTATED        1      1      1      7
  PPARGC1B WILD-TYPE     94     73    120     73
D788V6, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                7                 73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPARGC1B MUTATED        2      1      4      2      0      1
  PPARGC1B WILD-TYPE     50     63     68    102     40     58
D788V7, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                1                 63
  CLUS_3                4                 68
  CLUS_4                2                102
  CLUS_5                0                 40
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1B MUTATED        8      0      2
  PPARGC1B WILD-TYPE    209     75     97
D788V8, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                8                209
  CLUS_2                0                 75
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPARGC1B MUTATED        4      2      1
  PPARGC1B WILD-TYPE    117    106     71
D788V9, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                4                117
  CLUS_2                2                106
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARGC1B MUTATED        2      0      0      0      5
  PPARGC1B WILD-TYPE     86     66     45     55     42
D788V10, multiclass
        clus
vv       PPARGC1B MUTATED PPARGC1B WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                0                 66
  CLUS_3                0                 45
  CLUS_4                0                 55
  CLUS_5                5                 42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(789) Variable = MRPL24 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL24 MUTATED        0      5      1      0
  MRPL24 WILD-TYPE    204    132     46      3
D789V1, multiclass
        clus
vv       MRPL24 MUTATED MRPL24 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              5              132
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRPL24 MUTATED        0      4      1      0      0
  MRPL24 WILD-TYPE     39     92     43     88     80
D789V2, multiclass
        clus
vv       MRPL24 MUTATED MRPL24 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRPL24 MUTATED        1      1      2      0      1
  MRPL24 WILD-TYPE     25     78     71     82     57
D789V3, multiclass
        clus
vv       MRPL24 MUTATED MRPL24 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL24 MUTATED        2      2      1      0
  MRPL24 WILD-TYPE    125     49     70     69
D789V4, multiclass
        clus
vv       MRPL24 MUTATED MRPL24 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRPL24 MUTATED        0      1      3      1      1
  MRPL24 WILD-TYPE     84     84     82     68     46
D789V5, multiclass
        clus
vv       MRPL24 MUTATED MRPL24 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              3               82
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MRPL24 MUTATED        4      0      0      2
  MRPL24 WILD-TYPE     91     74    121     78
D789V6, multiclass
        clus
vv       MRPL24 MUTATED MRPL24 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              0               74
  CLUS_3              0              121
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MRPL24 MUTATED        1      4      0      0      1      0
  MRPL24 WILD-TYPE     51     60     72    104     39     59
D789V7, multiclass
        clus
vv       MRPL24 MUTATED MRPL24 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              4               60
  CLUS_3              0               72
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL24 MUTATED        5      0      1
  MRPL24 WILD-TYPE    212     75     98
D789V8, multiclass
        clus
vv       MRPL24 MUTATED MRPL24 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MRPL24 MUTATED        1      1      3
  MRPL24 WILD-TYPE    120    107     69
D789V9, multiclass
        clus
vv       MRPL24 MUTATED MRPL24 WILD-TYPE
  CLUS_1              1              120
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MRPL24 MUTATED        1      0      3      0      1
  MRPL24 WILD-TYPE     87     66     42     55     46
D789V10, multiclass
        clus
vv       MRPL24 MUTATED MRPL24 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(790) Variable = F8 MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED        8     19      3      0
  F8 WILD-TYPE    196    118     44      3
D790V1, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          8          196
  CLUS_2         19          118
  CLUS_3          3           44
  CLUS_4          0            3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  F8 MUTATED        3     10      3      5      2
  F8 WILD-TYPE     36     86     41     83     78
D790V2, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          3           36
  CLUS_2         10           86
  CLUS_3          3           41
  CLUS_4          5           83
  CLUS_5          2           78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  F8 MUTATED        2      7      6      0      8
  F8 WILD-TYPE     24     72     67     82     50
D790V3, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          2           24
  CLUS_2          7           72
  CLUS_3          6           67
  CLUS_4          0           82
  CLUS_5          8           50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED        4     13      4      2
  F8 WILD-TYPE    123     38     67     67
D790V4, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          4          123
  CLUS_2         13           38
  CLUS_3          4           67
  CLUS_4          2           67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  F8 MUTATED        6      0     13      5      5
  F8 WILD-TYPE     78     85     72     64     42
D790V5, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          6           78
  CLUS_2          0           85
  CLUS_3         13           72
  CLUS_4          5           64
  CLUS_5          5           42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  F8 MUTATED        9      1      6     13
  F8 WILD-TYPE     86     73    115     67
D790V6, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          9           86
  CLUS_2          1           73
  CLUS_3          6          115
  CLUS_4         13           67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  F8 MUTATED       10     10      3      3      0      4
  F8 WILD-TYPE     42     54     69    101     40     55
D790V7, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1         10           42
  CLUS_2         10           54
  CLUS_3          3           69
  CLUS_4          3          101
  CLUS_5          0           40
  CLUS_6          4           55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F8 MUTATED       23      0      7
  F8 WILD-TYPE    194     75     92
D790V8, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1         23          194
  CLUS_2          0           75
  CLUS_3          7           92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  F8 MUTATED       12      3      6
  F8 WILD-TYPE    109    105     66
D790V9, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1         12          109
  CLUS_2          3          105
  CLUS_3          6           66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  F8 MUTATED        6      1      4      3      7
  F8 WILD-TYPE     82     65     41     52     40
D790V10, multiclass
        clus
vv       F8 MUTATED F8 WILD-TYPE
  CLUS_1          6           82
  CLUS_2          1           65
  CLUS_3          4           41
  CLUS_4          3           52
  CLUS_5          7           40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(791) Variable = GOLT1B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLT1B MUTATED        0      5      0      0
  GOLT1B WILD-TYPE    204    132     47      3
D791V1, multiclass
        clus
vv       GOLT1B MUTATED GOLT1B WILD-TYPE
  CLUS_1              0              204
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GOLT1B MUTATED        0      2      2      0      0
  GOLT1B WILD-TYPE     39     94     42     88     80
D791V2, multiclass
        clus
vv       GOLT1B MUTATED GOLT1B WILD-TYPE
  CLUS_1              0               39
  CLUS_2              2               94
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GOLT1B MUTATED        1      2      0      0      0
  GOLT1B WILD-TYPE     25     77     73     82     58
D791V3, multiclass
        clus
vv       GOLT1B MUTATED GOLT1B WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               77
  CLUS_3              0               73
  CLUS_4              0               82
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLT1B MUTATED        1      0      2      0
  GOLT1B WILD-TYPE    126     51     69     69
D791V4, multiclass
        clus
vv       GOLT1B MUTATED GOLT1B WILD-TYPE
  CLUS_1              1              126
  CLUS_2              0               51
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GOLT1B MUTATED        1      0      4      0      0
  GOLT1B WILD-TYPE     83     85     81     69     47
D791V5, multiclass
        clus
vv       GOLT1B MUTATED GOLT1B WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               85
  CLUS_3              4               81
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GOLT1B MUTATED        2      0      0      3
  GOLT1B WILD-TYPE     93     74    121     77
D791V6, multiclass
        clus
vv       GOLT1B MUTATED GOLT1B WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0               74
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GOLT1B MUTATED        0      2      1      1      0      1
  GOLT1B WILD-TYPE     52     62     71    103     40     58
D791V7, multiclass
        clus
vv       GOLT1B MUTATED GOLT1B WILD-TYPE
  CLUS_1              0               52
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GOLT1B MUTATED        4      0      1
  GOLT1B WILD-TYPE    213     75     98
D791V8, multiclass
        clus
vv       GOLT1B MUTATED GOLT1B WILD-TYPE
  CLUS_1              4              213
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GOLT1B MUTATED        2      1      1
  GOLT1B WILD-TYPE    119    107     71
D791V9, multiclass
        clus
vv       GOLT1B MUTATED GOLT1B WILD-TYPE
  CLUS_1              2              119
  CLUS_2              1              107
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GOLT1B MUTATED        3      0      1      0      0
  GOLT1B WILD-TYPE     85     66     44     55     47
D791V10, multiclass
        clus
vv       GOLT1B MUTATED GOLT1B WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(792) Variable = HOOK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK1 MUTATED        0      7      0      0
  HOOK1 WILD-TYPE    204    130     47      3
D792V1, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOOK1 MUTATED        0      4      1      0      1
  HOOK1 WILD-TYPE     39     92     43     88     79
D792V2, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOOK1 MUTATED        0      1      2      1      2
  HOOK1 WILD-TYPE     26     78     71     81     56
D792V3, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK1 MUTATED        0      4      1      1
  HOOK1 WILD-TYPE    127     47     70     68
D792V4, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOOK1 MUTATED        0      2      4      0      1
  HOOK1 WILD-TYPE     84     83     81     69     46
D792V5, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             4              81
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOOK1 MUTATED        1      0      1      5
  HOOK1 WILD-TYPE     94     74    120     75
D792V6, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HOOK1 MUTATED        3      2      1      1      0      0
  HOOK1 WILD-TYPE     49     62     71    103     40     59
D792V7, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOOK1 MUTATED        7      0      0
  HOOK1 WILD-TYPE    210     75     99
D792V8, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOOK1 MUTATED        3      0      2
  HOOK1 WILD-TYPE    118    108     70
D792V9, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOOK1 MUTATED        0      0      2      0      3
  HOOK1 WILD-TYPE     88     66     43     55     44
D792V10, multiclass
        clus
vv       HOOK1 MUTATED HOOK1 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(793) Variable = ARHGEF5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF5 MUTATED        0      6      0      0
  ARHGEF5 WILD-TYPE    204    131     47      3
D793V1, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               6               131
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF5 MUTATED        0      4      2      0      1
  ARHGEF5 WILD-TYPE     39     92     42     88     79
D793V2, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               4                92
  CLUS_3               2                42
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF5 MUTATED        1      1      1      0      2
  ARHGEF5 WILD-TYPE     25     78     72     82     56
D793V3, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                78
  CLUS_3               1                72
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF5 MUTATED        2      3      0      0
  ARHGEF5 WILD-TYPE    125     48     71     69
D793V4, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               3                48
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF5 MUTATED        0      0      5      1      1
  ARHGEF5 WILD-TYPE     84     85     80     68     46
D793V5, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               5                80
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF5 MUTATED        1      1      1      4
  ARHGEF5 WILD-TYPE     94     73    120     76
D793V6, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARHGEF5 MUTATED        3      3      1      0      0      0
  ARHGEF5 WILD-TYPE     49     61     71    104     40     59
D793V7, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               3                61
  CLUS_3               1                71
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF5 MUTATED        7      0      0
  ARHGEF5 WILD-TYPE    210     75     99
D793V8, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               7               210
  CLUS_2               0                75
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ARHGEF5 MUTATED        4      0      2
  ARHGEF5 WILD-TYPE    117    108     70
D793V9, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               0               108
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF5 MUTATED        2      0      2      0      2
  ARHGEF5 WILD-TYPE     86     66     43     55     45
D793V10, multiclass
        clus
vv       ARHGEF5 MUTATED ARHGEF5 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(794) Variable = CIB3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB3 MUTATED        0      4      0      0
  CIB3 WILD-TYPE    204    133     47      3
D794V1, multiclass
        clus
vv       CIB3 MUTATED CIB3 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            4            133
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIB3 MUTATED        0      3      1      0      0
  CIB3 WILD-TYPE     39     93     43     88     80
D794V2, multiclass
        clus
vv       CIB3 MUTATED CIB3 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIB3 MUTATED        0      4      0      0      0
  CIB3 WILD-TYPE     26     75     73     82     58
D794V3, multiclass
        clus
vv       CIB3 MUTATED CIB3 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            0             73
  CLUS_4            0             82
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB3 MUTATED        0      1      3      0
  CIB3 WILD-TYPE    127     50     68     69
D794V4, multiclass
        clus
vv       CIB3 MUTATED CIB3 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            1             50
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIB3 MUTATED        0      0      4      0      0
  CIB3 WILD-TYPE     84     85     81     69     47
D794V5, multiclass
        clus
vv       CIB3 MUTATED CIB3 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            4             81
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CIB3 MUTATED        1      0      0      3
  CIB3 WILD-TYPE     94     74    121     77
D794V6, multiclass
        clus
vv       CIB3 MUTATED CIB3 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            0             74
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CIB3 MUTATED        2      3      0      0      0      0
  CIB3 WILD-TYPE     50     61     72    104     40     59
D794V7, multiclass
        clus
vv       CIB3 MUTATED CIB3 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            3             61
  CLUS_3            0             72
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB3 MUTATED        5      0      0
  CIB3 WILD-TYPE    212     75     99
D794V8, multiclass
        clus
vv       CIB3 MUTATED CIB3 WILD-TYPE
  CLUS_1            5            212
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CIB3 MUTATED        1      1      2
  CIB3 WILD-TYPE    120    107     70
D794V9, multiclass
        clus
vv       CIB3 MUTATED CIB3 WILD-TYPE
  CLUS_1            1            120
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CIB3 MUTATED        1      0      2      0      1
  CIB3 WILD-TYPE     87     66     43     55     46
D794V10, multiclass
        clus
vv       CIB3 MUTATED CIB3 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(795) Variable = TBL1XR1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBL1XR1 MUTATED        0      7      0      0
  TBL1XR1 WILD-TYPE    204    130     47      3
D795V1, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               7               130
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBL1XR1 MUTATED        1      3      1      0      0
  TBL1XR1 WILD-TYPE     38     93     43     88     80
D795V2, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               3                93
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBL1XR1 MUTATED        1      0      1      2      2
  TBL1XR1 WILD-TYPE     25     79     72     80     56
D795V3, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                79
  CLUS_3               1                72
  CLUS_4               2                80
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBL1XR1 MUTATED        1      3      0      2
  TBL1XR1 WILD-TYPE    126     48     71     67
D795V4, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               3                48
  CLUS_3               0                71
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBL1XR1 MUTATED        0      3      4      1      0
  TBL1XR1 WILD-TYPE     84     82     81     68     47
D795V5, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               3                82
  CLUS_3               4                81
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBL1XR1 MUTATED        1      2      0      5
  TBL1XR1 WILD-TYPE     94     72    121     75
D795V6, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               2                72
  CLUS_3               0               121
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TBL1XR1 MUTATED        3      4      0      1      0      0
  TBL1XR1 WILD-TYPE     49     60     72    103     40     59
D795V7, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               4                60
  CLUS_3               0                72
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBL1XR1 MUTATED        7      1      0
  TBL1XR1 WILD-TYPE    210     74     99
D795V8, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               7               210
  CLUS_2               1                74
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBL1XR1 MUTATED        4      0      1
  TBL1XR1 WILD-TYPE    117    108     71
D795V9, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               0               108
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBL1XR1 MUTATED        2      0      1      0      2
  TBL1XR1 WILD-TYPE     86     66     44     55     45
D795V10, multiclass
        clus
vv       TBL1XR1 MUTATED TBL1XR1 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(796) Variable = WHSC1L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WHSC1L1 MUTATED        4     12      2      0
  WHSC1L1 WILD-TYPE    200    125     45      3
D796V1, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               4               200
  CLUS_2              12               125
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WHSC1L1 MUTATED        0      8      1      0      2
  WHSC1L1 WILD-TYPE     39     88     43     88     78
D796V2, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               8                88
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WHSC1L1 MUTATED        2      6      5      1      3
  WHSC1L1 WILD-TYPE     24     73     68     81     55
D796V3, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               6                73
  CLUS_3               5                68
  CLUS_4               1                81
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WHSC1L1 MUTATED        3      9      4      1
  WHSC1L1 WILD-TYPE    124     42     67     68
D796V4, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               9                42
  CLUS_3               4                67
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WHSC1L1 MUTATED        1      4      9      1      3
  WHSC1L1 WILD-TYPE     83     81     76     68     44
D796V5, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               4                81
  CLUS_3               9                76
  CLUS_4               1                68
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WHSC1L1 MUTATED        5      3      1      9
  WHSC1L1 WILD-TYPE     90     71    120     71
D796V6, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               5                90
  CLUS_2               3                71
  CLUS_3               1               120
  CLUS_4               9                71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WHSC1L1 MUTATED        4      8      3      1      0      1
  WHSC1L1 WILD-TYPE     48     56     69    103     40     58
D796V7, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               8                56
  CLUS_3               3                69
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  WHSC1L1 MUTATED       15      1      1
  WHSC1L1 WILD-TYPE    202     74     98
D796V8, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1              15               202
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  WHSC1L1 MUTATED        3      1      4
  WHSC1L1 WILD-TYPE    118    107     68
D796V9, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               1               107
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WHSC1L1 MUTATED        0      1      2      1      4
  WHSC1L1 WILD-TYPE     88     65     43     54     43
D796V10, multiclass
        clus
vv       WHSC1L1 MUTATED WHSC1L1 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               1                54
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(797) Variable = C1ORF14 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF14 MUTATED        1     12      1      0
  C1ORF14 WILD-TYPE    203    125     46      3
D797V1, multiclass
        clus
vv       C1ORF14 MUTATED C1ORF14 WILD-TYPE
  CLUS_1               1               203
  CLUS_2              12               125
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF14 MUTATED        3      6      2      0      0
  C1ORF14 WILD-TYPE     36     90     42     88     80
D797V2, multiclass
        clus
vv       C1ORF14 MUTATED C1ORF14 WILD-TYPE
  CLUS_1               3                36
  CLUS_2               6                90
  CLUS_3               2                42
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF14 MUTATED        0      7      2      1      2
  C1ORF14 WILD-TYPE     26     72     71     81     56
D797V3, multiclass
        clus
vv       C1ORF14 MUTATED C1ORF14 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               7                72
  CLUS_3               2                71
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF14 MUTATED        0      7      4      1
  C1ORF14 WILD-TYPE    127     44     67     68
D797V4, multiclass
        clus
vv       C1ORF14 MUTATED C1ORF14 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               7                44
  CLUS_3               4                67
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF14 MUTATED        0      3      4      2      4
  C1ORF14 WILD-TYPE     84     82     81     67     43
D797V5, multiclass
        clus
vv       C1ORF14 MUTATED C1ORF14 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               3                82
  CLUS_3               4                81
  CLUS_4               2                67
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF14 MUTATED        2      1      0     10
  C1ORF14 WILD-TYPE     93     73    121     70
D797V6, multiclass
        clus
vv       C1ORF14 MUTATED C1ORF14 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4              10                70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1ORF14 MUTATED        4      3      2      4      1      0
  C1ORF14 WILD-TYPE     48     61     70    100     39     59
D797V7, multiclass
        clus
vv       C1ORF14 MUTATED C1ORF14 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               3                61
  CLUS_3               2                70
  CLUS_4               4               100
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF14 MUTATED       12      2      0
  C1ORF14 WILD-TYPE    205     73     99
D797V8, multiclass
        clus
vv       C1ORF14 MUTATED C1ORF14 WILD-TYPE
  CLUS_1              12               205
  CLUS_2               2                73
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C1ORF14 MUTATED        5      4      1
  C1ORF14 WILD-TYPE    116    104     71
D797V9, multiclass
        clus
vv       C1ORF14 MUTATED C1ORF14 WILD-TYPE
  CLUS_1               5               116
  CLUS_2               4               104
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF14 MUTATED        5      1      0      0      4
  C1ORF14 WILD-TYPE     83     65     45     55     43
D797V10, multiclass
        clus
vv       C1ORF14 MUTATED C1ORF14 WILD-TYPE
  CLUS_1               5                83
  CLUS_2               1                65
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(798) Variable = CUL1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL1 MUTATED        4     14      2      0
  CUL1 WILD-TYPE    200    123     45      3
D798V1, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            4            200
  CLUS_2           14            123
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL1 MUTATED        3      9      2      2      1
  CUL1 WILD-TYPE     36     87     42     86     79
D798V2, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            3             36
  CLUS_2            9             87
  CLUS_3            2             42
  CLUS_4            2             86
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL1 MUTATED        0      8      3      0      3
  CUL1 WILD-TYPE     26     71     70     82     55
D798V3, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            8             71
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL1 MUTATED        5      5      4      0
  CUL1 WILD-TYPE    122     46     67     69
D798V4, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            5            122
  CLUS_2            5             46
  CLUS_3            4             67
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL1 MUTATED        2      2      8      4      2
  CUL1 WILD-TYPE     82     83     77     65     45
D798V5, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            2             83
  CLUS_3            8             77
  CLUS_4            4             65
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CUL1 MUTATED        7      1      2      8
  CUL1 WILD-TYPE     88     73    119     72
D798V6, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            7             88
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            8             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CUL1 MUTATED        4      7      3      2      2      2
  CUL1 WILD-TYPE     48     57     69    102     38     57
D798V7, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            7             57
  CLUS_3            3             69
  CLUS_4            2            102
  CLUS_5            2             38
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL1 MUTATED       16      1      3
  CUL1 WILD-TYPE    201     74     96
D798V8, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1           16            201
  CLUS_2            1             74
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CUL1 MUTATED        8      4      5
  CUL1 WILD-TYPE    113    104     67
D798V9, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            8            113
  CLUS_2            4            104
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CUL1 MUTATED        6      1      3      0      7
  CUL1 WILD-TYPE     82     65     42     55     40
D798V10, multiclass
        clus
vv       CUL1 MUTATED CUL1 WILD-TYPE
  CLUS_1            6             82
  CLUS_2            1             65
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            7             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(799) Variable = C9ORF46 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF46 MUTATED        1      3      0      0
  C9ORF46 WILD-TYPE    203    134     47      3
D799V1, multiclass
        clus
vv       C9ORF46 MUTATED C9ORF46 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               3               134
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF46 MUTATED        0      2      1      0      0
  C9ORF46 WILD-TYPE     39     94     43     88     80
D799V2, multiclass
        clus
vv       C9ORF46 MUTATED C9ORF46 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               2                94
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF46 MUTATED        0      2      0      0      2
  C9ORF46 WILD-TYPE     26     77     73     82     56
D799V3, multiclass
        clus
vv       C9ORF46 MUTATED C9ORF46 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               0                73
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF46 MUTATED        1      2      1      0
  C9ORF46 WILD-TYPE    126     49     70     69
D799V4, multiclass
        clus
vv       C9ORF46 MUTATED C9ORF46 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               2                49
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF46 MUTATED        0      0      1      2      1
  C9ORF46 WILD-TYPE     84     85     84     67     46
D799V5, multiclass
        clus
vv       C9ORF46 MUTATED C9ORF46 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               1                84
  CLUS_4               2                67
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF46 MUTATED        2      0      0      2
  C9ORF46 WILD-TYPE     93     74    121     78
D799V6, multiclass
        clus
vv       C9ORF46 MUTATED C9ORF46 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               0                74
  CLUS_3               0               121
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C9ORF46 MUTATED        2      2      0      0      0      0
  C9ORF46 WILD-TYPE     50     62     72    104     40     59
D799V7, multiclass
        clus
vv       C9ORF46 MUTATED C9ORF46 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               2                62
  CLUS_3               0                72
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF46 MUTATED        4      0      0
  C9ORF46 WILD-TYPE    213     75     99
D799V8, multiclass
        clus
vv       C9ORF46 MUTATED C9ORF46 WILD-TYPE
  CLUS_1               4               213
  CLUS_2               0                75
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF46 MUTATED        2      0      1
  C9ORF46 WILD-TYPE    119    108     71
D799V9, multiclass
        clus
vv       C9ORF46 MUTATED C9ORF46 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               0               108
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF46 MUTATED        1      0      1      0      1
  C9ORF46 WILD-TYPE     87     66     44     55     46
D799V10, multiclass
        clus
vv       C9ORF46 MUTATED C9ORF46 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(800) Variable = VPRBP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPRBP MUTATED        1      6      1      0
  VPRBP WILD-TYPE    203    131     46      3
D800V1, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             1             203
  CLUS_2             6             131
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPRBP MUTATED        1      1      1      0      1
  VPRBP WILD-TYPE     38     95     43     88     79
D800V2, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             1              38
  CLUS_2             1              95
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPRBP MUTATED        0      3      0      1      4
  VPRBP WILD-TYPE     26     76     73     81     54
D800V3, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             0              73
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPRBP MUTATED        2      5      0      1
  VPRBP WILD-TYPE    125     46     71     68
D800V4, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             2             125
  CLUS_2             5              46
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPRBP MUTATED        0      1      5      1      1
  VPRBP WILD-TYPE     84     84     80     68     46
D800V5, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPRBP MUTATED        3      2      0      3
  VPRBP WILD-TYPE     92     72    121     77
D800V6, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VPRBP MUTATED        2      5      0      1      0      0
  VPRBP WILD-TYPE     50     59     72    103     40     59
D800V7, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             2              50
  CLUS_2             5              59
  CLUS_3             0              72
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VPRBP MUTATED        6      1      1
  VPRBP WILD-TYPE    211     74     98
D800V8, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             6             211
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VPRBP MUTATED        2      1      1
  VPRBP WILD-TYPE    119    107     71
D800V9, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPRBP MUTATED        1      1      1      0      1
  VPRBP WILD-TYPE     87     65     44     55     46
D800V10, multiclass
        clus
vv       VPRBP MUTATED VPRBP WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(801) Variable = INO80D MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INO80D MUTATED        3     13      0      0
  INO80D WILD-TYPE    201    124     47      3
D801V1, multiclass
        clus
vv       INO80D MUTATED INO80D WILD-TYPE
  CLUS_1              3              201
  CLUS_2             13              124
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INO80D MUTATED        1      5      2      1      1
  INO80D WILD-TYPE     38     91     42     87     79
D801V2, multiclass
        clus
vv       INO80D MUTATED INO80D WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INO80D MUTATED        0      4      3      0      8
  INO80D WILD-TYPE     26     75     70     82     50
D801V3, multiclass
        clus
vv       INO80D MUTATED INO80D WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              8               50
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INO80D MUTATED        3      8      3      1
  INO80D WILD-TYPE    124     43     68     68
D801V4, multiclass
        clus
vv       INO80D MUTATED INO80D WILD-TYPE
  CLUS_1              3              124
  CLUS_2              8               43
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INO80D MUTATED        2      1      8      2      3
  INO80D WILD-TYPE     82     84     77     67     44
D801V5, multiclass
        clus
vv       INO80D MUTATED INO80D WILD-TYPE
  CLUS_1              2               82
  CLUS_2              1               84
  CLUS_3              8               77
  CLUS_4              2               67
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INO80D MUTATED        4      1      4      7
  INO80D WILD-TYPE     91     73    117     73
D801V6, multiclass
        clus
vv       INO80D MUTATED INO80D WILD-TYPE
  CLUS_1              4               91
  CLUS_2              1               73
  CLUS_3              4              117
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  INO80D MUTATED        5      8      1      0      0      2
  INO80D WILD-TYPE     47     56     71    104     40     57
D801V7, multiclass
        clus
vv       INO80D MUTATED INO80D WILD-TYPE
  CLUS_1              5               47
  CLUS_2              8               56
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INO80D MUTATED       12      1      3
  INO80D WILD-TYPE    205     74     96
D801V8, multiclass
        clus
vv       INO80D MUTATED INO80D WILD-TYPE
  CLUS_1             12              205
  CLUS_2              1               74
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INO80D MUTATED        6      1      2
  INO80D WILD-TYPE    115    107     70
D801V9, multiclass
        clus
vv       INO80D MUTATED INO80D WILD-TYPE
  CLUS_1              6              115
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INO80D MUTATED        2      0      2      2      3
  INO80D WILD-TYPE     86     66     43     53     44
D801V10, multiclass
        clus
vv       INO80D MUTATED INO80D WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              2               53
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(802) Variable = B4GALNT4 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALNT4 MUTATED        2     15      1      0
  B4GALNT4 WILD-TYPE    202    122     46      3
D802V1, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                2                202
  CLUS_2               15                122
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B4GALNT4 MUTATED        1      7      2      1      2
  B4GALNT4 WILD-TYPE     38     89     42     87     78
D802V2, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                7                 89
  CLUS_3                2                 42
  CLUS_4                1                 87
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B4GALNT4 MUTATED        1      4      3      2      3
  B4GALNT4 WILD-TYPE     25     75     70     80     55
D802V3, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                4                 75
  CLUS_3                3                 70
  CLUS_4                2                 80
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALNT4 MUTATED        3      5      3      2
  B4GALNT4 WILD-TYPE    124     46     68     67
D802V4, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                3                124
  CLUS_2                5                 46
  CLUS_3                3                 68
  CLUS_4                2                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B4GALNT4 MUTATED        1      4      8      2      3
  B4GALNT4 WILD-TYPE     83     81     77     67     44
D802V5, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                4                 81
  CLUS_3                8                 77
  CLUS_4                2                 67
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALNT4 MUTATED        6      2      2      8
  B4GALNT4 WILD-TYPE     89     72    119     72
D802V6, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                6                 89
  CLUS_2                2                 72
  CLUS_3                2                119
  CLUS_4                8                 72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  B4GALNT4 MUTATED        5      6      2      2      2      1
  B4GALNT4 WILD-TYPE     47     58     70    102     38     58
D802V7, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                5                 47
  CLUS_2                6                 58
  CLUS_3                2                 70
  CLUS_4                2                102
  CLUS_5                2                 38
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  B4GALNT4 MUTATED       15      1      2
  B4GALNT4 WILD-TYPE    202     74     97
D802V8, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1               15                202
  CLUS_2                1                 74
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  B4GALNT4 MUTATED        7      4      2
  B4GALNT4 WILD-TYPE    114    104     70
D802V9, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                7                114
  CLUS_2                4                104
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B4GALNT4 MUTATED        7      0      1      0      5
  B4GALNT4 WILD-TYPE     81     66     44     55     42
D802V10, multiclass
        clus
vv       B4GALNT4 MUTATED B4GALNT4 WILD-TYPE
  CLUS_1                7                 81
  CLUS_2                0                 66
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                5                 42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(803) Variable = PTX4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTX4 MUTATED        0      9      2      0
  PTX4 WILD-TYPE    204    128     45      3
D803V1, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            9            128
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTX4 MUTATED        1      8      2      0      0
  PTX4 WILD-TYPE     38     88     42     88     80
D803V2, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            8             88
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTX4 MUTATED        0      3      4      0      3
  PTX4 WILD-TYPE     26     76     69     82     55
D803V3, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            4             69
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTX4 MUTATED        2      4      3      1
  PTX4 WILD-TYPE    125     47     68     68
D803V4, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            4             47
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTX4 MUTATED        0      3      8      1      0
  PTX4 WILD-TYPE     84     82     77     68     47
D803V5, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            8             77
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTX4 MUTATED        1      2      1      8
  PTX4 WILD-TYPE     94     72    120     72
D803V6, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            2             72
  CLUS_3            1            120
  CLUS_4            8             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTX4 MUTATED        2      1      3      5      1      0
  PTX4 WILD-TYPE     50     63     69     99     39     59
D803V7, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            1             63
  CLUS_3            3             69
  CLUS_4            5             99
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTX4 MUTATED        9      1      2
  PTX4 WILD-TYPE    208     74     97
D803V8, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            9            208
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTX4 MUTATED        4      3      2
  PTX4 WILD-TYPE    117    105     70
D803V9, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            3            105
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTX4 MUTATED        4      1      0      0      4
  PTX4 WILD-TYPE     84     65     45     55     43
D803V10, multiclass
        clus
vv       PTX4 MUTATED PTX4 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(804) Variable = ARHGEF17 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF17 MUTATED        3     16      2      0
  ARHGEF17 WILD-TYPE    201    121     45      3
D804V1, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                3                201
  CLUS_2               16                121
  CLUS_3                2                 45
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF17 MUTATED        0     10      3      3      2
  ARHGEF17 WILD-TYPE     39     86     41     85     78
D804V2, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2               10                 86
  CLUS_3                3                 41
  CLUS_4                3                 85
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF17 MUTATED        2      5      4      3      2
  ARHGEF17 WILD-TYPE     24     74     69     79     56
D804V3, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                5                 74
  CLUS_3                4                 69
  CLUS_4                3                 79
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF17 MUTATED        6      5      2      3
  ARHGEF17 WILD-TYPE    121     46     69     66
D804V4, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                6                121
  CLUS_2                5                 46
  CLUS_3                2                 69
  CLUS_4                3                 66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF17 MUTATED        3      3     11      1      2
  ARHGEF17 WILD-TYPE     81     82     74     68     45
D804V5, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                3                 81
  CLUS_2                3                 82
  CLUS_3               11                 74
  CLUS_4                1                 68
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARHGEF17 MUTATED        2      4      5      9
  ARHGEF17 WILD-TYPE     93     70    116     71
D804V6, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                4                 70
  CLUS_3                5                116
  CLUS_4                9                 71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARHGEF17 MUTATED        5      5      4      4      1      2
  ARHGEF17 WILD-TYPE     47     59     68    100     39     57
D804V7, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                5                 47
  CLUS_2                5                 59
  CLUS_3                4                 68
  CLUS_4                4                100
  CLUS_5                1                 39
  CLUS_6                2                 57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGEF17 MUTATED       14      3      4
  ARHGEF17 WILD-TYPE    203     72     95
D804V8, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1               14                203
  CLUS_2                3                 72
  CLUS_3                4                 95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ARHGEF17 MUTATED        8      4      4
  ARHGEF17 WILD-TYPE    113    104     68
D804V9, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                8                113
  CLUS_2                4                104
  CLUS_3                4                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARHGEF17 MUTATED        6      2      2      0      6
  ARHGEF17 WILD-TYPE     82     64     43     55     41
D804V10, multiclass
        clus
vv       ARHGEF17 MUTATED ARHGEF17 WILD-TYPE
  CLUS_1                6                 82
  CLUS_2                2                 64
  CLUS_3                2                 43
  CLUS_4                0                 55
  CLUS_5                6                 41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(805) Variable = GPR137B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR137B MUTATED        2      4      0      0
  GPR137B WILD-TYPE    202    133     47      3
D805V1, multiclass
        clus
vv       GPR137B MUTATED GPR137B WILD-TYPE
  CLUS_1               2               202
  CLUS_2               4               133
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR137B MUTATED        1      3      1      0      1
  GPR137B WILD-TYPE     38     93     43     88     79
D805V2, multiclass
        clus
vv       GPR137B MUTATED GPR137B WILD-TYPE
  CLUS_1               1                38
  CLUS_2               3                93
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR137B MUTATED        0      1      0      0      2
  GPR137B WILD-TYPE     26     78     73     82     56
D805V3, multiclass
        clus
vv       GPR137B MUTATED GPR137B WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                78
  CLUS_3               0                73
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR137B MUTATED        0      1      1      1
  GPR137B WILD-TYPE    127     50     70     68
D805V4, multiclass
        clus
vv       GPR137B MUTATED GPR137B WILD-TYPE
  CLUS_1               0               127
  CLUS_2               1                50
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR137B MUTATED        1      2      2      0      1
  GPR137B WILD-TYPE     83     83     83     69     46
D805V5, multiclass
        clus
vv       GPR137B MUTATED GPR137B WILD-TYPE
  CLUS_1               1                83
  CLUS_2               2                83
  CLUS_3               2                83
  CLUS_4               0                69
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR137B MUTATED        1      0      1      4
  GPR137B WILD-TYPE     94     74    120     76
D805V6, multiclass
        clus
vv       GPR137B MUTATED GPR137B WILD-TYPE
  CLUS_1               1                94
  CLUS_2               0                74
  CLUS_3               1               120
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR137B MUTATED        1      0      2      2      1      0
  GPR137B WILD-TYPE     51     64     70    102     39     59
D805V7, multiclass
        clus
vv       GPR137B MUTATED GPR137B WILD-TYPE
  CLUS_1               1                51
  CLUS_2               0                64
  CLUS_3               2                70
  CLUS_4               2               102
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPR137B MUTATED        3      1      2
  GPR137B WILD-TYPE    214     74     97
D805V8, multiclass
        clus
vv       GPR137B MUTATED GPR137B WILD-TYPE
  CLUS_1               3               214
  CLUS_2               1                74
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPR137B MUTATED        3      3      0
  GPR137B WILD-TYPE    118    105     72
D805V9, multiclass
        clus
vv       GPR137B MUTATED GPR137B WILD-TYPE
  CLUS_1               3               118
  CLUS_2               3               105
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR137B MUTATED        3      0      0      1      2
  GPR137B WILD-TYPE     85     66     45     54     45
D805V10, multiclass
        clus
vv       GPR137B MUTATED GPR137B WILD-TYPE
  CLUS_1               3                85
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               1                54
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(806) Variable = FAM109B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM109B MUTATED        2      5      0      0
  FAM109B WILD-TYPE    202    132     47      3
D806V1, multiclass
        clus
vv       FAM109B MUTATED FAM109B WILD-TYPE
  CLUS_1               2               202
  CLUS_2               5               132
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM109B MUTATED        0      3      2      1      0
  FAM109B WILD-TYPE     39     93     42     87     80
D806V2, multiclass
        clus
vv       FAM109B MUTATED FAM109B WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               2                42
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM109B MUTATED        0      1      1      1      1
  FAM109B WILD-TYPE     26     78     72     81     57
D806V3, multiclass
        clus
vv       FAM109B MUTATED FAM109B WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                78
  CLUS_3               1                72
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM109B MUTATED        0      1      1      2
  FAM109B WILD-TYPE    127     50     70     67
D806V4, multiclass
        clus
vv       FAM109B MUTATED FAM109B WILD-TYPE
  CLUS_1               0               127
  CLUS_2               1                50
  CLUS_3               1                70
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM109B MUTATED        1      2      2      2      0
  FAM109B WILD-TYPE     83     83     83     67     47
D806V5, multiclass
        clus
vv       FAM109B MUTATED FAM109B WILD-TYPE
  CLUS_1               1                83
  CLUS_2               2                83
  CLUS_3               2                83
  CLUS_4               2                67
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM109B MUTATED        2      2      1      2
  FAM109B WILD-TYPE     93     72    120     78
D806V6, multiclass
        clus
vv       FAM109B MUTATED FAM109B WILD-TYPE
  CLUS_1               2                93
  CLUS_2               2                72
  CLUS_3               1               120
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM109B MUTATED        3      3      0      0      0      1
  FAM109B WILD-TYPE     49     61     72    104     40     58
D806V7, multiclass
        clus
vv       FAM109B MUTATED FAM109B WILD-TYPE
  CLUS_1               3                49
  CLUS_2               3                61
  CLUS_3               0                72
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM109B MUTATED        6      0      1
  FAM109B WILD-TYPE    211     75     98
D806V8, multiclass
        clus
vv       FAM109B MUTATED FAM109B WILD-TYPE
  CLUS_1               6               211
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM109B MUTATED        4      0      2
  FAM109B WILD-TYPE    117    108     70
D806V9, multiclass
        clus
vv       FAM109B MUTATED FAM109B WILD-TYPE
  CLUS_1               4               117
  CLUS_2               0               108
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM109B MUTATED        1      0      1      0      4
  FAM109B WILD-TYPE     87     66     44     55     43
D806V10, multiclass
        clus
vv       FAM109B MUTATED FAM109B WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(807) Variable = HGF MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HGF MUTATED        8      8      2      0
  HGF WILD-TYPE    196    129     45      3
D807V1, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           8           196
  CLUS_2           8           129
  CLUS_3           2            45
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HGF MUTATED        3      7      0      3      3
  HGF WILD-TYPE     36     89     44     85     77
D807V2, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           3            36
  CLUS_2           7            89
  CLUS_3           0            44
  CLUS_4           3            85
  CLUS_5           3            77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HGF MUTATED        5      3      5      2      2
  HGF WILD-TYPE     21     76     68     80     56
D807V3, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           5            21
  CLUS_2           3            76
  CLUS_3           5            68
  CLUS_4           2            80
  CLUS_5           2            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HGF MUTATED        9      3      5      0
  HGF WILD-TYPE    118     48     66     69
D807V4, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           9           118
  CLUS_2           3            48
  CLUS_3           5            66
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HGF MUTATED        3      4      7      3      1
  HGF WILD-TYPE     81     81     78     66     46
D807V5, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           3            81
  CLUS_2           4            81
  CLUS_3           7            78
  CLUS_4           3            66
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HGF MUTATED        4      3      6      5
  HGF WILD-TYPE     91     71    115     75
D807V6, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           4            91
  CLUS_2           3            71
  CLUS_3           6           115
  CLUS_4           5            75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HGF MUTATED        1      6      1      4      2      4
  HGF WILD-TYPE     51     58     71    100     38     55
D807V7, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           1            51
  CLUS_2           6            58
  CLUS_3           1            71
  CLUS_4           4           100
  CLUS_5           2            38
  CLUS_6           4            55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HGF MUTATED       11      3      4
  HGF WILD-TYPE    206     72     95
D807V8, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1          11           206
  CLUS_2           3            72
  CLUS_3           4            95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  HGF MUTATED        4      5      6
  HGF WILD-TYPE    117    103     66
D807V9, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           4           117
  CLUS_2           5           103
  CLUS_3           6            66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HGF MUTATED        2      3      5      3      2
  HGF WILD-TYPE     86     63     40     52     45
D807V10, multiclass
        clus
vv       HGF MUTATED HGF WILD-TYPE
  CLUS_1           2            86
  CLUS_2           3            63
  CLUS_3           5            40
  CLUS_4           3            52
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(808) Variable = GPR114 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR114 MUTATED        1      7      1      0
  GPR114 WILD-TYPE    203    130     46      3
D808V1, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              7              130
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR114 MUTATED        2      5      1      0      1
  GPR114 WILD-TYPE     37     91     43     88     79
D808V2, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR114 MUTATED        0      3      3      0      2
  GPR114 WILD-TYPE     26     76     70     82     56
D808V3, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR114 MUTATED        3      3      2      0
  GPR114 WILD-TYPE    124     48     69     69
D808V4, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              3               48
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR114 MUTATED        1      1      4      1      2
  GPR114 WILD-TYPE     83     84     81     68     45
D808V5, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR114 MUTATED        3      0      1      5
  GPR114 WILD-TYPE     92     74    120     75
D808V6, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR114 MUTATED        6      1      0      2      0      0
  GPR114 WILD-TYPE     46     63     72    102     40     59
D808V7, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              6               46
  CLUS_2              1               63
  CLUS_3              0               72
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR114 MUTATED        7      1      1
  GPR114 WILD-TYPE    210     74     98
D808V8, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              7              210
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR114 MUTATED        4      2      2
  GPR114 WILD-TYPE    117    106     70
D808V9, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              2              106
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR114 MUTATED        2      1      0      1      4
  GPR114 WILD-TYPE     86     65     45     54     43
D808V10, multiclass
        clus
vv       GPR114 MUTATED GPR114 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              0               45
  CLUS_4              1               54
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(809) Variable = DHRS9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHRS9 MUTATED        5      4      0      0
  DHRS9 WILD-TYPE    199    133     47      3
D809V1, multiclass
        clus
vv       DHRS9 MUTATED DHRS9 WILD-TYPE
  CLUS_1             5             199
  CLUS_2             4             133
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHRS9 MUTATED        0      3      1      0      1
  DHRS9 WILD-TYPE     39     93     43     88     79
D809V2, multiclass
        clus
vv       DHRS9 MUTATED DHRS9 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHRS9 MUTATED        1      2      2      1      2
  DHRS9 WILD-TYPE     25     77     71     81     56
D809V3, multiclass
        clus
vv       DHRS9 MUTATED DHRS9 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHRS9 MUTATED        2      4      2      0
  DHRS9 WILD-TYPE    125     47     69     69
D809V4, multiclass
        clus
vv       DHRS9 MUTATED DHRS9 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHRS9 MUTATED        0      2      5      0      2
  DHRS9 WILD-TYPE     84     83     80     69     45
D809V5, multiclass
        clus
vv       DHRS9 MUTATED DHRS9 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHRS9 MUTATED        2      2      1      4
  DHRS9 WILD-TYPE     93     72    120     76
D809V6, multiclass
        clus
vv       DHRS9 MUTATED DHRS9 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DHRS9 MUTATED        1      6      1      1      0      0
  DHRS9 WILD-TYPE     51     58     71    103     40     59
D809V7, multiclass
        clus
vv       DHRS9 MUTATED DHRS9 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             6              58
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHRS9 MUTATED        9      0      0
  DHRS9 WILD-TYPE    208     75     99
D809V8, multiclass
        clus
vv       DHRS9 MUTATED DHRS9 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHRS9 MUTATED        1      1      2
  DHRS9 WILD-TYPE    120    107     70
D809V9, multiclass
        clus
vv       DHRS9 MUTATED DHRS9 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHRS9 MUTATED        0      1      1      0      2
  DHRS9 WILD-TYPE     88     65     44     55     45
D809V10, multiclass
        clus
vv       DHRS9 MUTATED DHRS9 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(810) Variable = RGS12 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS12 MUTATED        8     20      2      0
  RGS12 WILD-TYPE    196    117     45      3
D810V1, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1             8             196
  CLUS_2            20             117
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS12 MUTATED        3     14      1      3      3
  RGS12 WILD-TYPE     36     82     43     85     77
D810V2, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1             3              36
  CLUS_2            14              82
  CLUS_3             1              43
  CLUS_4             3              85
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS12 MUTATED        4      7      8      1      5
  RGS12 WILD-TYPE     22     72     65     81     53
D810V3, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1             4              22
  CLUS_2             7              72
  CLUS_3             8              65
  CLUS_4             1              81
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS12 MUTATED        7     15      2      1
  RGS12 WILD-TYPE    120     36     69     68
D810V4, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1             7             120
  CLUS_2            15              36
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS12 MUTATED        5      6     14      3      1
  RGS12 WILD-TYPE     79     79     71     66     46
D810V5, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1             5              79
  CLUS_2             6              79
  CLUS_3            14              71
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS12 MUTATED        8      3      7     11
  RGS12 WILD-TYPE     87     71    114     69
D810V6, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1             8              87
  CLUS_2             3              71
  CLUS_3             7             114
  CLUS_4            11              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RGS12 MUTATED        5     10      5      5      2      3
  RGS12 WILD-TYPE     47     54     67     99     38     56
D810V7, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1             5              47
  CLUS_2            10              54
  CLUS_3             5              67
  CLUS_4             5              99
  CLUS_5             2              38
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGS12 MUTATED       21      4      5
  RGS12 WILD-TYPE    196     71     94
D810V8, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1            21             196
  CLUS_2             4              71
  CLUS_3             5              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGS12 MUTATED       11      5      6
  RGS12 WILD-TYPE    110    103     66
D810V9, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1            11             110
  CLUS_2             5             103
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS12 MUTATED        4      2      5      3      8
  RGS12 WILD-TYPE     84     64     40     52     39
D810V10, multiclass
        clus
vv       RGS12 MUTATED RGS12 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             2              64
  CLUS_3             5              40
  CLUS_4             3              52
  CLUS_5             8              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(811) Variable = TRIP10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP10 MUTATED        1      6      1      0
  TRIP10 WILD-TYPE    203    131     46      3
D811V1, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              6              131
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP10 MUTATED        0      7      0      0      2
  TRIP10 WILD-TYPE     39     89     44     88     78
D811V2, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              7               89
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP10 MUTATED        1      3      3      0      0
  TRIP10 WILD-TYPE     25     76     70     82     58
D811V3, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP10 MUTATED        1      4      2      0
  TRIP10 WILD-TYPE    126     47     69     69
D811V4, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              4               47
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP10 MUTATED        0      1      7      0      1
  TRIP10 WILD-TYPE     84     84     78     69     46
D811V5, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              7               78
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP10 MUTATED        2      0      2      5
  TRIP10 WILD-TYPE     93     74    119     75
D811V6, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0               74
  CLUS_3              2              119
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIP10 MUTATED        4      3      1      0      1      0
  TRIP10 WILD-TYPE     48     61     71    104     39     59
D811V7, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP10 MUTATED        6      1      2
  TRIP10 WILD-TYPE    211     74     97
D811V8, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              1               74
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIP10 MUTATED        2      1      3
  TRIP10 WILD-TYPE    119    107     69
D811V9, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP10 MUTATED        1      0      3      0      2
  TRIP10 WILD-TYPE     87     66     42     55     45
D811V10, multiclass
        clus
vv       TRIP10 MUTATED TRIP10 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(812) Variable = BTBD12 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD12 MUTATED        3     19      2      0
  BTBD12 WILD-TYPE    201    118     45      3
D812V1, multiclass
        clus
vv       BTBD12 MUTATED BTBD12 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             19              118
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD12 MUTATED        1     13      3      1      1
  BTBD12 WILD-TYPE     38     83     41     87     79
D812V2, multiclass
        clus
vv       BTBD12 MUTATED BTBD12 WILD-TYPE
  CLUS_1              1               38
  CLUS_2             13               83
  CLUS_3              3               41
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD12 MUTATED        1      5      6      3      6
  BTBD12 WILD-TYPE     25     74     67     79     52
D812V3, multiclass
        clus
vv       BTBD12 MUTATED BTBD12 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              5               74
  CLUS_3              6               67
  CLUS_4              3               79
  CLUS_5              6               52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD12 MUTATED        4     12      2      3
  BTBD12 WILD-TYPE    123     39     69     66
D812V4, multiclass
        clus
vv       BTBD12 MUTATED BTBD12 WILD-TYPE
  CLUS_1              4              123
  CLUS_2             12               39
  CLUS_3              2               69
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD12 MUTATED        0      3     13      5      3
  BTBD12 WILD-TYPE     84     82     72     64     44
D812V5, multiclass
        clus
vv       BTBD12 MUTATED BTBD12 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3             13               72
  CLUS_4              5               64
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD12 MUTATED        6      5      1     12
  BTBD12 WILD-TYPE     89     69    120     68
D812V6, multiclass
        clus
vv       BTBD12 MUTATED BTBD12 WILD-TYPE
  CLUS_1              6               89
  CLUS_2              5               69
  CLUS_3              1              120
  CLUS_4             12               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTBD12 MUTATED        9      7      3      4      1      1
  BTBD12 WILD-TYPE     43     57     69    100     39     58
D812V7, multiclass
        clus
vv       BTBD12 MUTATED BTBD12 WILD-TYPE
  CLUS_1              9               43
  CLUS_2              7               57
  CLUS_3              3               69
  CLUS_4              4              100
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTBD12 MUTATED       20      3      2
  BTBD12 WILD-TYPE    197     72     97
D812V8, multiclass
        clus
vv       BTBD12 MUTATED BTBD12 WILD-TYPE
  CLUS_1             20              197
  CLUS_2              3               72
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTBD12 MUTATED        8      1      6
  BTBD12 WILD-TYPE    113    107     66
D812V9, multiclass
        clus
vv       BTBD12 MUTATED BTBD12 WILD-TYPE
  CLUS_1              8              113
  CLUS_2              1              107
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD12 MUTATED        3      2      4      0      6
  BTBD12 WILD-TYPE     85     64     41     55     41
D812V10, multiclass
        clus
vv       BTBD12 MUTATED BTBD12 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              2               64
  CLUS_3              4               41
  CLUS_4              0               55
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(813) Variable = WAPAL MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WAPAL MUTATED        2     11      3      0
  WAPAL WILD-TYPE    202    126     44      3
D813V1, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             2             202
  CLUS_2            11             126
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WAPAL MUTATED        0      7      3      0      4
  WAPAL WILD-TYPE     39     89     41     88     76
D813V2, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              89
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             4              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WAPAL MUTATED        2      4      3      2      3
  WAPAL WILD-TYPE     24     75     70     80     55
D813V3, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             2              24
  CLUS_2             4              75
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WAPAL MUTATED        5      5      3      1
  WAPAL WILD-TYPE    122     46     68     68
D813V4, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             5             122
  CLUS_2             5              46
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WAPAL MUTATED        0      3      9      3      1
  WAPAL WILD-TYPE     84     82     76     66     46
D813V5, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             9              76
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WAPAL MUTATED        5      3      2      6
  WAPAL WILD-TYPE     90     71    119     74
D813V6, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             5              90
  CLUS_2             3              71
  CLUS_3             2             119
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WAPAL MUTATED        2      7      4      3      0      0
  WAPAL WILD-TYPE     50     57     68    101     40     59
D813V7, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             2              50
  CLUS_2             7              57
  CLUS_3             4              68
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WAPAL MUTATED       13      3      0
  WAPAL WILD-TYPE    204     72     99
D813V8, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1            13             204
  CLUS_2             3              72
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WAPAL MUTATED        4      3      6
  WAPAL WILD-TYPE    117    105     66
D813V9, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             4             117
  CLUS_2             3             105
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WAPAL MUTATED        0      3      5      0      5
  WAPAL WILD-TYPE     88     63     40     55     42
D813V10, multiclass
        clus
vv       WAPAL MUTATED WAPAL WILD-TYPE
  CLUS_1             0              88
  CLUS_2             3              63
  CLUS_3             5              40
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(814) Variable = CAB39L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAB39L MUTATED        2      5      0      0
  CAB39L WILD-TYPE    202    132     47      3
D814V1, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              2              202
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CAB39L MUTATED        1      4      0      0      0
  CAB39L WILD-TYPE     38     92     44     88     80
D814V2, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               92
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CAB39L MUTATED        0      2      1      1      3
  CAB39L WILD-TYPE     26     77     72     81     55
D814V3, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAB39L MUTATED        1      5      0      1
  CAB39L WILD-TYPE    126     46     71     68
D814V4, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              1              126
  CLUS_2              5               46
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CAB39L MUTATED        0      0      4      1      1
  CAB39L WILD-TYPE     84     85     81     68     46
D814V5, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CAB39L MUTATED        3      0      0      3
  CAB39L WILD-TYPE     92     74    121     77
D814V6, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              3               92
  CLUS_2              0               74
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CAB39L MUTATED        2      2      2      1      0      0
  CAB39L WILD-TYPE     50     62     70    103     40     59
D814V7, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              2               50
  CLUS_2              2               62
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CAB39L MUTATED        6      0      1
  CAB39L WILD-TYPE    211     75     98
D814V8, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              6              211
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CAB39L MUTATED        3      0      2
  CAB39L WILD-TYPE    118    108     70
D814V9, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CAB39L MUTATED        1      0      1      0      3
  CAB39L WILD-TYPE     87     66     44     55     44
D814V10, multiclass
        clus
vv       CAB39L MUTATED CAB39L WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(815) Variable = ZCCHC2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC2 MUTATED        1      5      0      0
  ZCCHC2 WILD-TYPE    203    132     47      3
D815V1, multiclass
        clus
vv       ZCCHC2 MUTATED ZCCHC2 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC2 MUTATED        0      3      1      1      0
  ZCCHC2 WILD-TYPE     39     93     43     87     80
D815V2, multiclass
        clus
vv       ZCCHC2 MUTATED ZCCHC2 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC2 MUTATED        0      4      2      0      0
  ZCCHC2 WILD-TYPE     26     75     71     82     58
D815V3, multiclass
        clus
vv       ZCCHC2 MUTATED ZCCHC2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC2 MUTATED        0      4      2      0
  ZCCHC2 WILD-TYPE    127     47     69     69
D815V4, multiclass
        clus
vv       ZCCHC2 MUTATED ZCCHC2 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              4               47
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC2 MUTATED        1      0      2      0      1
  ZCCHC2 WILD-TYPE     83     85     83     69     46
D815V5, multiclass
        clus
vv       ZCCHC2 MUTATED ZCCHC2 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               85
  CLUS_3              2               83
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC2 MUTATED        2      0      1      1
  ZCCHC2 WILD-TYPE     93     74    120     79
D815V6, multiclass
        clus
vv       ZCCHC2 MUTATED ZCCHC2 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZCCHC2 MUTATED        1      2      2      0      0      1
  ZCCHC2 WILD-TYPE     51     62     70    104     40     58
D815V7, multiclass
        clus
vv       ZCCHC2 MUTATED ZCCHC2 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              2               62
  CLUS_3              2               70
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZCCHC2 MUTATED        5      0      1
  ZCCHC2 WILD-TYPE    212     75     98
D815V8, multiclass
        clus
vv       ZCCHC2 MUTATED ZCCHC2 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZCCHC2 MUTATED        3      0      1
  ZCCHC2 WILD-TYPE    118    108     71
D815V9, multiclass
        clus
vv       ZCCHC2 MUTATED ZCCHC2 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC2 MUTATED        1      0      1      1      1
  ZCCHC2 WILD-TYPE     87     66     44     54     46
D815V10, multiclass
        clus
vv       ZCCHC2 MUTATED ZCCHC2 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(816) Variable = WDR90 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR90 MUTATED        5     11      4      0
  WDR90 WILD-TYPE    199    126     43      3
D816V1, multiclass
        clus
vv       WDR90 MUTATED WDR90 WILD-TYPE
  CLUS_1             5             199
  CLUS_2            11             126
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR90 MUTATED        3     10      0      0      1
  WDR90 WILD-TYPE     36     86     44     88     79
D816V2, multiclass
        clus
vv       WDR90 MUTATED WDR90 WILD-TYPE
  CLUS_1             3              36
  CLUS_2            10              86
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR90 MUTATED        1      7      3      1      4
  WDR90 WILD-TYPE     25     72     70     81     54
D816V3, multiclass
        clus
vv       WDR90 MUTATED WDR90 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             7              72
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR90 MUTATED        3      7      3      3
  WDR90 WILD-TYPE    124     44     68     66
D816V4, multiclass
        clus
vv       WDR90 MUTATED WDR90 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             7              44
  CLUS_3             3              68
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR90 MUTATED        0      2      9      5      3
  WDR90 WILD-TYPE     84     83     76     64     44
D816V5, multiclass
        clus
vv       WDR90 MUTATED WDR90 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             9              76
  CLUS_4             5              64
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR90 MUTATED        6      4      0      9
  WDR90 WILD-TYPE     89     70    121     71
D816V6, multiclass
        clus
vv       WDR90 MUTATED WDR90 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             4              70
  CLUS_3             0             121
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR90 MUTATED        5      7      4      2      2      0
  WDR90 WILD-TYPE     47     57     68    102     38     59
D816V7, multiclass
        clus
vv       WDR90 MUTATED WDR90 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             7              57
  CLUS_3             4              68
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR90 MUTATED       17      3      0
  WDR90 WILD-TYPE    200     72     99
D816V8, multiclass
        clus
vv       WDR90 MUTATED WDR90 WILD-TYPE
  CLUS_1            17             200
  CLUS_2             3              72
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR90 MUTATED        8      2      2
  WDR90 WILD-TYPE    113    106     70
D816V9, multiclass
        clus
vv       WDR90 MUTATED WDR90 WILD-TYPE
  CLUS_1             8             113
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR90 MUTATED        4      1      1      0      6
  WDR90 WILD-TYPE     84     65     44     55     41
D816V10, multiclass
        clus
vv       WDR90 MUTATED WDR90 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(817) Variable = UGT2A3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT2A3 MUTATED        1      6      0      0
  UGT2A3 WILD-TYPE    203    131     47      3
D817V1, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              6              131
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGT2A3 MUTATED        0      2      0      1      1
  UGT2A3 WILD-TYPE     39     94     44     87     79
D817V2, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              2               94
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGT2A3 MUTATED        1      2      1      1      1
  UGT2A3 WILD-TYPE     25     77     72     81     57
D817V3, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               77
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT2A3 MUTATED        3      2      0      1
  UGT2A3 WILD-TYPE    124     49     71     68
D817V4, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              2               49
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGT2A3 MUTATED        0      1      2      2      1
  UGT2A3 WILD-TYPE     84     84     83     67     46
D817V5, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              2               83
  CLUS_4              2               67
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UGT2A3 MUTATED        2      1      1      2
  UGT2A3 WILD-TYPE     93     73    120     78
D817V6, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UGT2A3 MUTATED        1      4      2      0      0      0
  UGT2A3 WILD-TYPE     51     60     70    104     40     59
D817V7, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              4               60
  CLUS_3              2               70
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT2A3 MUTATED        6      0      1
  UGT2A3 WILD-TYPE    211     75     98
D817V8, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UGT2A3 MUTATED        3      0      1
  UGT2A3 WILD-TYPE    118    108     71
D817V9, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UGT2A3 MUTATED        0      0      1      0      3
  UGT2A3 WILD-TYPE     88     66     44     55     44
D817V10, multiclass
        clus
vv       UGT2A3 MUTATED UGT2A3 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(818) Variable = BRF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRF1 MUTATED        3      7      1      0
  BRF1 WILD-TYPE    201    130     46      3
D818V1, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            3            201
  CLUS_2            7            130
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRF1 MUTATED        1      4      0      2      0
  BRF1 WILD-TYPE     38     92     44     86     80
D818V2, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            4             92
  CLUS_3            0             44
  CLUS_4            2             86
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRF1 MUTATED        0      3      2      3      1
  BRF1 WILD-TYPE     26     76     71     79     57
D818V3, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            2             71
  CLUS_4            3             79
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRF1 MUTATED        0      3      2      4
  BRF1 WILD-TYPE    127     48     69     65
D818V4, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            3             48
  CLUS_3            2             69
  CLUS_4            4             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRF1 MUTATED        2      3      3      1      1
  BRF1 WILD-TYPE     82     82     82     68     46
D818V5, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            3             82
  CLUS_3            3             82
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRF1 MUTATED        2      4      2      2
  BRF1 WILD-TYPE     93     70    119     78
D818V6, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            4             70
  CLUS_3            2            119
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRF1 MUTATED        1      4      0      1      4      1
  BRF1 WILD-TYPE     51     60     72    103     36     58
D818V7, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            4             60
  CLUS_3            0             72
  CLUS_4            1            103
  CLUS_5            4             36
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRF1 MUTATED        6      3      2
  BRF1 WILD-TYPE    211     72     97
D818V8, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            6            211
  CLUS_2            3             72
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRF1 MUTATED        4      1      2
  BRF1 WILD-TYPE    117    107     70
D818V9, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRF1 MUTATED        4      0      1      0      2
  BRF1 WILD-TYPE     84     66     44     55     45
D818V10, multiclass
        clus
vv       BRF1 MUTATED BRF1 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(819) Variable = PLK1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLK1 MUTATED        4     10      2      0
  PLK1 WILD-TYPE    200    127     45      3
D819V1, multiclass
        clus
vv       PLK1 MUTATED PLK1 WILD-TYPE
  CLUS_1            4            200
  CLUS_2           10            127
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLK1 MUTATED        1      8      3      1      1
  PLK1 WILD-TYPE     38     88     41     87     79
D819V2, multiclass
        clus
vv       PLK1 MUTATED PLK1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            8             88
  CLUS_3            3             41
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLK1 MUTATED        1      7      3      2      1
  PLK1 WILD-TYPE     25     72     70     80     57
D819V3, multiclass
        clus
vv       PLK1 MUTATED PLK1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            7             72
  CLUS_3            3             70
  CLUS_4            2             80
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLK1 MUTATED        4      5      4      1
  PLK1 WILD-TYPE    123     46     67     68
D819V4, multiclass
        clus
vv       PLK1 MUTATED PLK1 WILD-TYPE
  CLUS_1            4            123
  CLUS_2            5             46
  CLUS_3            4             67
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLK1 MUTATED        1      5      5      1      3
  PLK1 WILD-TYPE     83     80     80     68     44
D819V5, multiclass
        clus
vv       PLK1 MUTATED PLK1 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            5             80
  CLUS_3            5             80
  CLUS_4            1             68
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLK1 MUTATED        2      3      4      6
  PLK1 WILD-TYPE     93     71    117     74
D819V6, multiclass
        clus
vv       PLK1 MUTATED PLK1 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            3             71
  CLUS_3            4            117
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLK1 MUTATED        2      2      4      4      3      0
  PLK1 WILD-TYPE     50     62     68    100     37     59
D819V7, multiclass
        clus
vv       PLK1 MUTATED PLK1 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            2             62
  CLUS_3            4             68
  CLUS_4            4            100
  CLUS_5            3             37
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLK1 MUTATED       10      4      1
  PLK1 WILD-TYPE    207     71     98
D819V8, multiclass
        clus
vv       PLK1 MUTATED PLK1 WILD-TYPE
  CLUS_1           10            207
  CLUS_2            4             71
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PLK1 MUTATED        5      5      1
  PLK1 WILD-TYPE    116    103     71
D819V9, multiclass
        clus
vv       PLK1 MUTATED PLK1 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            5            103
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLK1 MUTATED        5      3      1      0      2
  PLK1 WILD-TYPE     83     63     44     55     45
D819V10, multiclass
        clus
vv       PLK1 MUTATED PLK1 WILD-TYPE
  CLUS_1            5             83
  CLUS_2            3             63
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(820) Variable = DUSP9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP9 MUTATED        5      3      0      0
  DUSP9 WILD-TYPE    199    134     47      3
D820V1, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             5             199
  CLUS_2             3             134
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DUSP9 MUTATED        1      2      1      2      0
  DUSP9 WILD-TYPE     38     94     43     86     80
D820V2, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             2              94
  CLUS_3             1              43
  CLUS_4             2              86
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DUSP9 MUTATED        0      3      0      0      2
  DUSP9 WILD-TYPE     26     76     73     82     56
D820V3, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             0              73
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP9 MUTATED        0      3      2      0
  DUSP9 WILD-TYPE    127     48     69     69
D820V4, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             3              48
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DUSP9 MUTATED        3      2      1      0      1
  DUSP9 WILD-TYPE     81     83     84     69     46
D820V5, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             2              83
  CLUS_3             1              84
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DUSP9 MUTATED        0      0      3      4
  DUSP9 WILD-TYPE     95     74    118     76
D820V6, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             0              74
  CLUS_3             3             118
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DUSP9 MUTATED        3      1      1      0      0      3
  DUSP9 WILD-TYPE     49     63     71    104     40     56
D820V7, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             1              63
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP9 MUTATED        5      0      3
  DUSP9 WILD-TYPE    212     75     96
D820V8, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             0              75
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DUSP9 MUTATED        4      1      0
  DUSP9 WILD-TYPE    117    107     72
D820V9, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DUSP9 MUTATED        2      0      0      2      1
  DUSP9 WILD-TYPE     86     66     45     53     46
D820V10, multiclass
        clus
vv       DUSP9 MUTATED DUSP9 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             2              53
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(821) Variable = KIAA0427 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0427 MUTATED        1     14      1      0
  KIAA0427 WILD-TYPE    203    123     46      3
D821V1, multiclass
        clus
vv       KIAA0427 MUTATED KIAA0427 WILD-TYPE
  CLUS_1                1                203
  CLUS_2               14                123
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0427 MUTATED        2      7      1      1      0
  KIAA0427 WILD-TYPE     37     89     43     87     80
D821V2, multiclass
        clus
vv       KIAA0427 MUTATED KIAA0427 WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                7                 89
  CLUS_3                1                 43
  CLUS_4                1                 87
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0427 MUTATED        1      6      5      0      3
  KIAA0427 WILD-TYPE     25     73     68     82     55
D821V3, multiclass
        clus
vv       KIAA0427 MUTATED KIAA0427 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                6                 73
  CLUS_3                5                 68
  CLUS_4                0                 82
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0427 MUTATED        1     11      3      0
  KIAA0427 WILD-TYPE    126     40     68     69
D821V4, multiclass
        clus
vv       KIAA0427 MUTATED KIAA0427 WILD-TYPE
  CLUS_1                1                126
  CLUS_2               11                 40
  CLUS_3                3                 68
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0427 MUTATED        1      2      5      3      3
  KIAA0427 WILD-TYPE     83     83     80     66     44
D821V5, multiclass
        clus
vv       KIAA0427 MUTATED KIAA0427 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 83
  CLUS_3                5                 80
  CLUS_4                3                 66
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0427 MUTATED        5      1      1      7
  KIAA0427 WILD-TYPE     90     73    120     73
D821V6, multiclass
        clus
vv       KIAA0427 MUTATED KIAA0427 WILD-TYPE
  CLUS_1                5                 90
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                7                 73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0427 MUTATED        3      9      0      1      2      1
  KIAA0427 WILD-TYPE     49     55     72    103     38     58
D821V7, multiclass
        clus
vv       KIAA0427 MUTATED KIAA0427 WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                9                 55
  CLUS_3                0                 72
  CLUS_4                1                103
  CLUS_5                2                 38
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0427 MUTATED       14      0      2
  KIAA0427 WILD-TYPE    203     75     97
D821V8, multiclass
        clus
vv       KIAA0427 MUTATED KIAA0427 WILD-TYPE
  CLUS_1               14                203
  CLUS_2                0                 75
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0427 MUTATED        4      1      6
  KIAA0427 WILD-TYPE    117    107     66
D821V9, multiclass
        clus
vv       KIAA0427 MUTATED KIAA0427 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                1                107
  CLUS_3                6                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0427 MUTATED        2      0      4      1      4
  KIAA0427 WILD-TYPE     86     66     41     54     43
D821V10, multiclass
        clus
vv       KIAA0427 MUTATED KIAA0427 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                0                 66
  CLUS_3                4                 41
  CLUS_4                1                 54
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(822) Variable = UBXN6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBXN6 MUTATED        2      8      2      0
  UBXN6 WILD-TYPE    202    129     45      3
D822V1, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             8             129
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBXN6 MUTATED        1      8      2      0      0
  UBXN6 WILD-TYPE     38     88     42     88     80
D822V2, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             8              88
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBXN6 MUTATED        0      7      1      0      1
  UBXN6 WILD-TYPE     26     72     72     82     57
D822V3, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             7              72
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBXN6 MUTATED        0      4      5      0
  UBXN6 WILD-TYPE    127     47     66     69
D822V4, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             4              47
  CLUS_3             5              66
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBXN6 MUTATED        1      0      7      2      1
  UBXN6 WILD-TYPE     83     85     78     67     46
D822V5, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             7              78
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBXN6 MUTATED        3      2      1      5
  UBXN6 WILD-TYPE     92     72    120     75
D822V6, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UBXN6 MUTATED        2      4      5      0      1      0
  UBXN6 WILD-TYPE     50     60     67    104     39     59
D822V7, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             4              60
  CLUS_3             5              67
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBXN6 MUTATED       12      0      0
  UBXN6 WILD-TYPE    205     75     99
D822V8, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  UBXN6 MUTATED        3      0      6
  UBXN6 WILD-TYPE    118    108     66
D822V9, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0             108
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBXN6 MUTATED        2      0      3      0      4
  UBXN6 WILD-TYPE     86     66     42     55     43
D822V10, multiclass
        clus
vv       UBXN6 MUTATED UBXN6 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(823) Variable = EEF2K MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF2K MUTATED        2      5      2      0
  EEF2K WILD-TYPE    202    132     45      3
D823V1, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             2             202
  CLUS_2             5             132
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEF2K MUTATED        2      2      0      1      1
  EEF2K WILD-TYPE     37     94     44     87     79
D823V2, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             2              37
  CLUS_2             2              94
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEF2K MUTATED        1      1      2      1      3
  EEF2K WILD-TYPE     25     78     71     81     55
D823V3, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF2K MUTATED        4      3      0      1
  EEF2K WILD-TYPE    123     48     71     68
D823V4, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             4             123
  CLUS_2             3              48
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEF2K MUTATED        2      2      3      1      1
  EEF2K WILD-TYPE     82     83     82     68     46
D823V5, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             2              82
  CLUS_2             2              83
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEF2K MUTATED        3      1      2      3
  EEF2K WILD-TYPE     92     73    119     77
D823V6, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EEF2K MUTATED        1      5      3      0      0      1
  EEF2K WILD-TYPE     51     59     69    104     40     58
D823V7, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             1              51
  CLUS_2             5              59
  CLUS_3             3              69
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EEF2K MUTATED        8      1      1
  EEF2K WILD-TYPE    209     74     98
D823V8, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             8             209
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EEF2K MUTATED        4      1      1
  EEF2K WILD-TYPE    117    107     71
D823V9, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEF2K MUTATED        1      1      1      1      2
  EEF2K WILD-TYPE     87     65     44     54     45
D823V10, multiclass
        clus
vv       EEF2K MUTATED EEF2K WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(824) Variable = PYHIN1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PYHIN1 MUTATED        6      5      0      0
  PYHIN1 WILD-TYPE    198    132     47      3
D824V1, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              6              198
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PYHIN1 MUTATED        1      7      0      1      1
  PYHIN1 WILD-TYPE     38     89     44     87     79
D824V2, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              7               89
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PYHIN1 MUTATED        1      1      5      2      2
  PYHIN1 WILD-TYPE     25     78     68     80     56
D824V3, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              5               68
  CLUS_4              2               80
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PYHIN1 MUTATED        6      2      1      2
  PYHIN1 WILD-TYPE    121     49     70     67
D824V4, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              6              121
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PYHIN1 MUTATED        1      2      2      5      1
  PYHIN1 WILD-TYPE     83     83     83     64     46
D824V5, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              2               83
  CLUS_4              5               64
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PYHIN1 MUTATED        5      2      1      3
  PYHIN1 WILD-TYPE     90     72    120     77
D824V6, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              5               90
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PYHIN1 MUTATED        3      2      0      3      3      0
  PYHIN1 WILD-TYPE     49     62     72    101     37     59
D824V7, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              3              101
  CLUS_5              3               37
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PYHIN1 MUTATED        6      1      4
  PYHIN1 WILD-TYPE    211     74     95
D824V8, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              1               74
  CLUS_3              4               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PYHIN1 MUTATED        6      2      1
  PYHIN1 WILD-TYPE    115    106     71
D824V9, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              2              106
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PYHIN1 MUTATED        4      1      1      1      2
  PYHIN1 WILD-TYPE     84     65     44     54     45
D824V10, multiclass
        clus
vv       PYHIN1 MUTATED PYHIN1 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(825) Variable = C9ORF25 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF25 MUTATED        0      3      2      0
  C9ORF25 WILD-TYPE    204    134     45      3
D825V1, multiclass
        clus
vv       C9ORF25 MUTATED C9ORF25 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               3               134
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF25 MUTATED        1      3      0      0      1
  C9ORF25 WILD-TYPE     38     93     44     88     79
D825V2, multiclass
        clus
vv       C9ORF25 MUTATED C9ORF25 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               3                93
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF25 MUTATED        1      0      2      0      2
  C9ORF25 WILD-TYPE     25     79     71     82     56
D825V3, multiclass
        clus
vv       C9ORF25 MUTATED C9ORF25 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                79
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF25 MUTATED        2      3      0      0
  C9ORF25 WILD-TYPE    125     48     71     69
D825V4, multiclass
        clus
vv       C9ORF25 MUTATED C9ORF25 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               3                48
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF25 MUTATED        0      1      2      1      1
  C9ORF25 WILD-TYPE     84     84     83     68     46
D825V5, multiclass
        clus
vv       C9ORF25 MUTATED C9ORF25 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               2                83
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF25 MUTATED        1      1      1      2
  C9ORF25 WILD-TYPE     94     73    120     78
D825V6, multiclass
        clus
vv       C9ORF25 MUTATED C9ORF25 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C9ORF25 MUTATED        1      1      2      1      0      0
  C9ORF25 WILD-TYPE     51     63     70    103     40     59
D825V7, multiclass
        clus
vv       C9ORF25 MUTATED C9ORF25 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               1                63
  CLUS_3               2                70
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF25 MUTATED        4      1      0
  C9ORF25 WILD-TYPE    213     74     99
D825V8, multiclass
        clus
vv       C9ORF25 MUTATED C9ORF25 WILD-TYPE
  CLUS_1               4               213
  CLUS_2               1                74
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C9ORF25 MUTATED        2      1      2
  C9ORF25 WILD-TYPE    119    107     70
D825V9, multiclass
        clus
vv       C9ORF25 MUTATED C9ORF25 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               1               107
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF25 MUTATED        1      1      1      0      2
  C9ORF25 WILD-TYPE     87     65     44     55     45
D825V10, multiclass
        clus
vv       C9ORF25 MUTATED C9ORF25 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               1                65
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(826) Variable = CD58 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD58 MUTATED        0      6      1      0
  CD58 WILD-TYPE    204    131     46      3
D826V1, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            6            131
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD58 MUTATED        0      3      2      0      1
  CD58 WILD-TYPE     39     93     42     88     79
D826V2, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD58 MUTATED        1      0      1      0      3
  CD58 WILD-TYPE     25     79     72     82     55
D826V3, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             79
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD58 MUTATED        2      2      0      1
  CD58 WILD-TYPE    125     49     71     68
D826V4, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            2             49
  CLUS_3            0             71
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD58 MUTATED        0      1      4      2      0
  CD58 WILD-TYPE     84     84     81     67     47
D826V5, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            4             81
  CLUS_4            2             67
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD58 MUTATED        2      1      2      2
  CD58 WILD-TYPE     93     73    119     78
D826V6, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD58 MUTATED        1      4      2      0      0      0
  CD58 WILD-TYPE     51     60     70    104     40     59
D826V7, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            4             60
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD58 MUTATED        7      0      0
  CD58 WILD-TYPE    210     75     99
D826V8, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD58 MUTATED        2      0      4
  CD58 WILD-TYPE    119    108     68
D826V9, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            0            108
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD58 MUTATED        2      0      2      0      2
  CD58 WILD-TYPE     86     66     43     55     45
D826V10, multiclass
        clus
vv       CD58 MUTATED CD58 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(827) Variable = C20ORF7 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF7 MUTATED        0      5      1      0
  C20ORF7 WILD-TYPE    204    132     46      3
D827V1, multiclass
        clus
vv       C20ORF7 MUTATED C20ORF7 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               5               132
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C20ORF7 MUTATED        0      2      1      0      2
  C20ORF7 WILD-TYPE     39     94     43     88     78
D827V2, multiclass
        clus
vv       C20ORF7 MUTATED C20ORF7 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               2                94
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C20ORF7 MUTATED        0      2      1      1      1
  C20ORF7 WILD-TYPE     26     77     72     81     57
D827V3, multiclass
        clus
vv       C20ORF7 MUTATED C20ORF7 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               1                72
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF7 MUTATED        1      2      1      1
  C20ORF7 WILD-TYPE    126     49     70     68
D827V4, multiclass
        clus
vv       C20ORF7 MUTATED C20ORF7 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               2                49
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C20ORF7 MUTATED        1      1      3      0      1
  C20ORF7 WILD-TYPE     83     84     82     69     46
D827V5, multiclass
        clus
vv       C20ORF7 MUTATED C20ORF7 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               3                82
  CLUS_4               0                69
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF7 MUTATED        0      1      1      4
  C20ORF7 WILD-TYPE     95     73    120     76
D827V6, multiclass
        clus
vv       C20ORF7 MUTATED C20ORF7 WILD-TYPE
  CLUS_1               0                95
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C20ORF7 MUTATED        2      1      0      3      0      0
  C20ORF7 WILD-TYPE     50     63     72    101     40     59
D827V7, multiclass
        clus
vv       C20ORF7 MUTATED C20ORF7 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               1                63
  CLUS_3               0                72
  CLUS_4               3               101
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C20ORF7 MUTATED        4      2      0
  C20ORF7 WILD-TYPE    213     73     99
D827V8, multiclass
        clus
vv       C20ORF7 MUTATED C20ORF7 WILD-TYPE
  CLUS_1               4               213
  CLUS_2               2                73
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C20ORF7 MUTATED        2      3      0
  C20ORF7 WILD-TYPE    119    105     72
D827V9, multiclass
        clus
vv       C20ORF7 MUTATED C20ORF7 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               3               105
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C20ORF7 MUTATED        2      2      0      0      1
  C20ORF7 WILD-TYPE     86     64     45     55     46
D827V10, multiclass
        clus
vv       C20ORF7 MUTATED C20ORF7 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               2                64
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(828) Variable = POLE3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLE3 MUTATED        0      3      0      0
  POLE3 WILD-TYPE    204    134     47      3
D828V1, multiclass
        clus
vv       POLE3 MUTATED POLE3 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             3             134
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POLE3 MUTATED        0      2      1      0      0
  POLE3 WILD-TYPE     39     94     43     88     80
D828V2, multiclass
        clus
vv       POLE3 MUTATED POLE3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             2              94
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POLE3 MUTATED        0      0      2      0      0
  POLE3 WILD-TYPE     26     79     71     82     58
D828V3, multiclass
[1] "Remove cluster labels:" "POLE3 MUTATED"         
clus
  POLE3 MUTATED POLE3 WILD-TYPE 
              2             316 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-4183      TCGA-BR-4184 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-7704      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8080      TCGA-BR-8081 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4465      TCGA-CG-4466 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6527 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8578 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6EV      TCGA-D7-A6EX 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A748 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6874      TCGA-F1-6875 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7916      TCGA-FP-7998 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8602 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF      TCGA-HU-A4GT 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4HD 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RO 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-IN-A6RR      TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-IN-A7NU      TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-KB-A6F5      TCGA-KB-A93G      TCGA-MX-A5UG      TCGA-RD-A7BS 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-RD-A7BT      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-SW-A7EA 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-AA64 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLE3 MUTATED        0      2      0      0
  POLE3 WILD-TYPE    127     49     71     69
D828V4, multiclass
[1] "Remove cluster labels:" "POLE3 MUTATED"         
clus
  POLE3 MUTATED POLE3 WILD-TYPE 
              2             316 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-4183      TCGA-BR-4184 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-7704      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8080      TCGA-BR-8081 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4465      TCGA-CG-4466 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6527 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8578 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6EV      TCGA-D7-A6EX 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A748 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6874      TCGA-F1-6875 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7916      TCGA-FP-7998 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8602 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF      TCGA-HU-A4GT 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4HD 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RO 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-IN-A6RR      TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-IN-A7NU      TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-KB-A6F5      TCGA-KB-A93G      TCGA-MX-A5UG      TCGA-RD-A7BS 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-RD-A7BT      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-SW-A7EA 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-AA64 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" "POLE3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POLE3 MUTATED        0      1      1      0      1
  POLE3 WILD-TYPE     84     84     84     69     46
D828V5, multiclass
        clus
vv       POLE3 MUTATED POLE3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             1              84
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POLE3 MUTATED        0      1      0      2
  POLE3 WILD-TYPE     95     73    121     78
D828V6, multiclass
        clus
vv       POLE3 MUTATED POLE3 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POLE3 MUTATED        1      1      0      1      0      0
  POLE3 WILD-TYPE     51     63     72    103     40     59
D828V7, multiclass
        clus
vv       POLE3 MUTATED POLE3 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             1              63
  CLUS_3             0              72
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  POLE3 MUTATED        2      1      0
  POLE3 WILD-TYPE    215     74     99
D828V8, multiclass
        clus
vv       POLE3 MUTATED POLE3 WILD-TYPE
  CLUS_1             2             215
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  POLE3 MUTATED        1      1      1
  POLE3 WILD-TYPE    120    107     71
D828V9, multiclass
        clus
vv       POLE3 MUTATED POLE3 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POLE3 MUTATED        1      1      0      0      1
  POLE3 WILD-TYPE     87     65     45     55     46
D828V10, multiclass
        clus
vv       POLE3 MUTATED POLE3 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(829) Variable = CHMP7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP7 MUTATED        0      4      1      0
  CHMP7 WILD-TYPE    204    133     46      3
D829V1, multiclass
        clus
vv       CHMP7 MUTATED CHMP7 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             4             133
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHMP7 MUTATED        1      1      1      0      0
  CHMP7 WILD-TYPE     38     95     43     88     80
D829V2, multiclass
        clus
vv       CHMP7 MUTATED CHMP7 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             1              95
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHMP7 MUTATED        1      1      1      1      1
  CHMP7 WILD-TYPE     25     78     72     81     57
D829V3, multiclass
        clus
vv       CHMP7 MUTATED CHMP7 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP7 MUTATED        1      2      1      1
  CHMP7 WILD-TYPE    126     49     70     68
D829V4, multiclass
        clus
vv       CHMP7 MUTATED CHMP7 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             2              49
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHMP7 MUTATED        1      1      0      1      1
  CHMP7 WILD-TYPE     83     84     85     68     46
D829V5, multiclass
        clus
vv       CHMP7 MUTATED CHMP7 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             0              85
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHMP7 MUTATED        2      1      0      1
  CHMP7 WILD-TYPE     93     73    121     79
D829V6, multiclass
        clus
vv       CHMP7 MUTATED CHMP7 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHMP7 MUTATED        1      1      0      1      1      1
  CHMP7 WILD-TYPE     51     63     72    103     39     58
D829V7, multiclass
        clus
vv       CHMP7 MUTATED CHMP7 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             1              63
  CLUS_3             0              72
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHMP7 MUTATED        3      1      1
  CHMP7 WILD-TYPE    214     74     98
D829V8, multiclass
        clus
vv       CHMP7 MUTATED CHMP7 WILD-TYPE
  CLUS_1             3             214
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHMP7 MUTATED        2      0      1
  CHMP7 WILD-TYPE    119    108     71
D829V9, multiclass
        clus
vv       CHMP7 MUTATED CHMP7 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHMP7 MUTATED        0      1      0      0      2
  CHMP7 WILD-TYPE     88     65     45     55     45
D829V10, multiclass
        clus
vv       CHMP7 MUTATED CHMP7 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(830) Variable = AMELX MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMELX MUTATED        2      3      0      0
  AMELX WILD-TYPE    202    134     47      3
D830V1, multiclass
        clus
vv       AMELX MUTATED AMELX WILD-TYPE
  CLUS_1             2             202
  CLUS_2             3             134
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMELX MUTATED        0      5      0      0      0
  AMELX WILD-TYPE     39     91     44     88     80
D830V2, multiclass
        clus
vv       AMELX MUTATED AMELX WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMELX MUTATED        0      0      3      1      1
  AMELX WILD-TYPE     26     79     70     81     57
D830V3, multiclass
        clus
vv       AMELX MUTATED AMELX WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              79
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMELX MUTATED        1      3      0      1
  AMELX WILD-TYPE    126     48     71     68
D830V4, multiclass
        clus
vv       AMELX MUTATED AMELX WILD-TYPE
  CLUS_1             1             126
  CLUS_2             3              48
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMELX MUTATED        0      0      4      0      1
  AMELX WILD-TYPE     84     85     81     69     46
D830V5, multiclass
        clus
vv       AMELX MUTATED AMELX WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             4              81
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMELX MUTATED        1      1      0      3
  AMELX WILD-TYPE     94     73    121     77
D830V6, multiclass
        clus
vv       AMELX MUTATED AMELX WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMELX MUTATED        2      2      0      0      1      0
  AMELX WILD-TYPE     50     62     72    104     39     59
D830V7, multiclass
        clus
vv       AMELX MUTATED AMELX WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             0              72
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMELX MUTATED        3      1      1
  AMELX WILD-TYPE    214     74     98
D830V8, multiclass
        clus
vv       AMELX MUTATED AMELX WILD-TYPE
  CLUS_1             3             214
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AMELX MUTATED        0      0      3
  AMELX WILD-TYPE    121    108     69
D830V9, multiclass
        clus
vv       AMELX MUTATED AMELX WILD-TYPE
  CLUS_1             0             121
  CLUS_2             0             108
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMELX MUTATED        1      0      1      0      1
  AMELX WILD-TYPE     87     66     44     55     46
D830V10, multiclass
        clus
vv       AMELX MUTATED AMELX WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(831) Variable = NEK8 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK8 MUTATED        2      6      3      0
  NEK8 WILD-TYPE    202    131     44      3
D831V1, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            2            202
  CLUS_2            6            131
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEK8 MUTATED        2      5      0      2      1
  NEK8 WILD-TYPE     37     91     44     86     79
D831V2, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            5             91
  CLUS_3            0             44
  CLUS_4            2             86
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEK8 MUTATED        1      5      3      1      1
  NEK8 WILD-TYPE     25     74     70     81     57
D831V3, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            5             74
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK8 MUTATED        4      2      5      0
  NEK8 WILD-TYPE    123     49     66     69
D831V4, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            4            123
  CLUS_2            2             49
  CLUS_3            5             66
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEK8 MUTATED        2      0      6      1      1
  NEK8 WILD-TYPE     82     85     79     68     46
D831V5, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            0             85
  CLUS_3            6             79
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK8 MUTATED        2      1      2      5
  NEK8 WILD-TYPE     93     73    119     75
D831V6, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEK8 MUTATED        2      4      1      2      1      1
  NEK8 WILD-TYPE     50     60     71    102     39     58
D831V7, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            4             60
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEK8 MUTATED       10      0      1
  NEK8 WILD-TYPE    207     75     98
D831V8, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1           10            207
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEK8 MUTATED        2      2      4
  NEK8 WILD-TYPE    119    106     68
D831V9, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            2            106
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEK8 MUTATED        1      1      3      1      2
  NEK8 WILD-TYPE     87     65     42     54     45
D831V10, multiclass
        clus
vv       NEK8 MUTATED NEK8 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            1             65
  CLUS_3            3             42
  CLUS_4            1             54
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(832) Variable = POMGNT1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POMGNT1 MUTATED        4      5      1      0
  POMGNT1 WILD-TYPE    200    132     46      3
D832V1, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               4               200
  CLUS_2               5               132
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POMGNT1 MUTATED        0      5      1      1      1
  POMGNT1 WILD-TYPE     39     91     43     87     79
D832V2, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               5                91
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POMGNT1 MUTATED        3      1      2      0      1
  POMGNT1 WILD-TYPE     23     78     71     82     57
D832V3, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               3                23
  CLUS_2               1                78
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POMGNT1 MUTATED        4      2      1      0
  POMGNT1 WILD-TYPE    123     49     70     69
D832V4, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               4               123
  CLUS_2               2                49
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POMGNT1 MUTATED        1      0      5      1      2
  POMGNT1 WILD-TYPE     83     85     80     68     45
D832V5, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                85
  CLUS_3               5                80
  CLUS_4               1                68
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POMGNT1 MUTATED        4      0      0      5
  POMGNT1 WILD-TYPE     91     74    121     75
D832V6, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               0                74
  CLUS_3               0               121
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POMGNT1 MUTATED        0      4      3      1      1      1
  POMGNT1 WILD-TYPE     52     60     69    103     39     58
D832V7, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               0                52
  CLUS_2               4                60
  CLUS_3               3                69
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  POMGNT1 MUTATED        8      1      1
  POMGNT1 WILD-TYPE    209     74     98
D832V8, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               8               209
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  POMGNT1 MUTATED        1      1      4
  POMGNT1 WILD-TYPE    120    107     68
D832V9, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               1               120
  CLUS_2               1               107
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POMGNT1 MUTATED        1      1      3      0      1
  POMGNT1 WILD-TYPE     87     65     42     55     46
D832V10, multiclass
        clus
vv       POMGNT1 MUTATED POMGNT1 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               1                65
  CLUS_3               3                42
  CLUS_4               0                55
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(833) Variable = ATP2B4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2B4 MUTATED        3     11      1      0
  ATP2B4 WILD-TYPE    201    126     46      3
D833V1, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             11              126
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2B4 MUTATED        2      7      2      1      2
  ATP2B4 WILD-TYPE     37     89     42     87     78
D833V2, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              7               89
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2B4 MUTATED        0      6      2      2      3
  ATP2B4 WILD-TYPE     26     73     71     80     55
D833V3, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              6               73
  CLUS_3              2               71
  CLUS_4              2               80
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2B4 MUTATED        1      5      5      2
  ATP2B4 WILD-TYPE    126     46     66     67
D833V4, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              5               46
  CLUS_3              5               66
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2B4 MUTATED        1      3      7      1      2
  ATP2B4 WILD-TYPE     83     82     78     68     45
D833V5, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               82
  CLUS_3              7               78
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2B4 MUTATED        3      1      3      7
  ATP2B4 WILD-TYPE     92     73    118     73
D833V6, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              3              118
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP2B4 MUTATED        2      6      2      2      2      0
  ATP2B4 WILD-TYPE     50     58     70    102     38     59
D833V7, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              6               58
  CLUS_3              2               70
  CLUS_4              2              102
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2B4 MUTATED       10      2      2
  ATP2B4 WILD-TYPE    207     73     97
D833V8, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1             10              207
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2B4 MUTATED        5      2      6
  ATP2B4 WILD-TYPE    116    106     66
D833V9, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              2              106
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2B4 MUTATED        5      1      3      0      4
  ATP2B4 WILD-TYPE     83     65     42     55     43
D833V10, multiclass
        clus
vv       ATP2B4 MUTATED ATP2B4 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              1               65
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(834) Variable = KIAA1539 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1539 MUTATED        1      6      3      0
  KIAA1539 WILD-TYPE    203    131     44      3
D834V1, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                6                131
  CLUS_3                3                 44
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1539 MUTATED        1      6      1      0      1
  KIAA1539 WILD-TYPE     38     90     43     88     79
D834V2, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                6                 90
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1539 MUTATED        0      3      2      1      3
  KIAA1539 WILD-TYPE     26     76     71     81     55
D834V3, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                3                 76
  CLUS_3                2                 71
  CLUS_4                1                 81
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1539 MUTATED        1      5      2      1
  KIAA1539 WILD-TYPE    126     46     69     68
D834V4, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                1                126
  CLUS_2                5                 46
  CLUS_3                2                 69
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1539 MUTATED        0      1      7      1      1
  KIAA1539 WILD-TYPE     84     84     78     68     46
D834V5, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                7                 78
  CLUS_4                1                 68
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1539 MUTATED        3      1      1      5
  KIAA1539 WILD-TYPE     92     73    120     75
D834V6, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                3                 92
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                5                 75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1539 MUTATED        2      3      2      2      1      0
  KIAA1539 WILD-TYPE     50     61     70    102     39     59
D834V7, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                3                 61
  CLUS_3                2                 70
  CLUS_4                2                102
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1539 MUTATED        9      1      0
  KIAA1539 WILD-TYPE    208     74     99
D834V8, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                9                208
  CLUS_2                1                 74
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1539 MUTATED        4      2      3
  KIAA1539 WILD-TYPE    117    106     69
D834V9, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                2                106
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1539 MUTATED        1      1      2      0      5
  KIAA1539 WILD-TYPE     87     65     43     55     42
D834V10, multiclass
        clus
vv       KIAA1539 MUTATED KIAA1539 WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                1                 65
  CLUS_3                2                 43
  CLUS_4                0                 55
  CLUS_5                5                 42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(835) Variable = SEZ6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEZ6 MUTATED        3      9      1      0
  SEZ6 WILD-TYPE    201    128     46      3
D835V1, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            3            201
  CLUS_2            9            128
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEZ6 MUTATED        1      8      1      2      0
  SEZ6 WILD-TYPE     38     88     43     86     80
D835V2, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            8             88
  CLUS_3            1             43
  CLUS_4            2             86
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEZ6 MUTATED        0      5      5      0      1
  SEZ6 WILD-TYPE     26     74     68     82     57
D835V3, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            5             74
  CLUS_3            5             68
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEZ6 MUTATED        1      6      3      1
  SEZ6 WILD-TYPE    126     45     68     68
D835V4, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            6             45
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEZ6 MUTATED        0      3      4      4      1
  SEZ6 WILD-TYPE     84     82     81     65     46
D835V5, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            4             81
  CLUS_4            4             65
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEZ6 MUTATED        4      2      0      6
  SEZ6 WILD-TYPE     91     72    121     74
D835V6, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SEZ6 MUTATED        5      1      2      2      3      0
  SEZ6 WILD-TYPE     47     63     70    102     37     59
D835V7, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            5             47
  CLUS_2            1             63
  CLUS_3            2             70
  CLUS_4            2            102
  CLUS_5            3             37
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SEZ6 MUTATED        9      2      2
  SEZ6 WILD-TYPE    208     73     97
D835V8, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            9            208
  CLUS_2            2             73
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SEZ6 MUTATED        7      2      1
  SEZ6 WILD-TYPE    114    106     71
D835V9, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            7            114
  CLUS_2            2            106
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEZ6 MUTATED        3      1      0      0      6
  SEZ6 WILD-TYPE     85     65     45     55     41
D835V10, multiclass
        clus
vv       SEZ6 MUTATED SEZ6 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            6             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(836) Variable = NARG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NARG2 MUTATED        2      9      2      0
  NARG2 WILD-TYPE    202    128     45      3
D836V1, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             9             128
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NARG2 MUTATED        2      9      0      0      1
  NARG2 WILD-TYPE     37     87     44     88     79
D836V2, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             9              87
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NARG2 MUTATED        1      6      4      0      2
  NARG2 WILD-TYPE     25     73     69     82     56
D836V3, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             6              73
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NARG2 MUTATED        2      7      4      0
  NARG2 WILD-TYPE    125     44     67     69
D836V4, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             7              44
  CLUS_3             4              67
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NARG2 MUTATED        0      1      9      1      2
  NARG2 WILD-TYPE     84     84     76     68     45
D836V5, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             9              76
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NARG2 MUTATED        4      1      1      7
  NARG2 WILD-TYPE     91     73    120     73
D836V6, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NARG2 MUTATED        5      2      2      3      1      0
  NARG2 WILD-TYPE     47     62     70    101     39     59
D836V7, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             2              62
  CLUS_3             2              70
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NARG2 MUTATED       12      1      0
  NARG2 WILD-TYPE    205     74     99
D836V8, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NARG2 MUTATED        5      2      3
  NARG2 WILD-TYPE    116    106     69
D836V9, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             2             106
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NARG2 MUTATED        3      0      2      0      5
  NARG2 WILD-TYPE     85     66     43     55     42
D836V10, multiclass
        clus
vv       NARG2 MUTATED NARG2 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(837) Variable = CHD3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD3 MUTATED        5     19      4      0
  CHD3 WILD-TYPE    199    118     43      3
D837V1, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            5            199
  CLUS_2           19            118
  CLUS_3            4             43
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHD3 MUTATED        3     13      2      4      3
  CHD3 WILD-TYPE     36     83     42     84     77
D837V2, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            3             36
  CLUS_2           13             83
  CLUS_3            2             42
  CLUS_4            4             84
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHD3 MUTATED        0      9      8      0      5
  CHD3 WILD-TYPE     26     70     65     82     53
D837V3, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            9             70
  CLUS_3            8             65
  CLUS_4            0             82
  CLUS_5            5             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD3 MUTATED        5      9      7      1
  CHD3 WILD-TYPE    122     42     64     68
D837V4, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            5            122
  CLUS_2            9             42
  CLUS_3            7             64
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHD3 MUTATED        3      2     10      5      5
  CHD3 WILD-TYPE     81     83     75     64     42
D837V5, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            3             81
  CLUS_2            2             83
  CLUS_3           10             75
  CLUS_4            5             64
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHD3 MUTATED       12      1      3      9
  CHD3 WILD-TYPE     83     73    118     71
D837V6, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1           12             83
  CLUS_2            1             73
  CLUS_3            3            118
  CLUS_4            9             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHD3 MUTATED       10      7      2      6      2      0
  CHD3 WILD-TYPE     42     57     70     98     38     59
D837V7, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1           10             42
  CLUS_2            7             57
  CLUS_3            2             70
  CLUS_4            6             98
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD3 MUTATED       18      5      4
  CHD3 WILD-TYPE    199     70     95
D837V8, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1           18            199
  CLUS_2            5             70
  CLUS_3            4             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CHD3 MUTATED        9      6      8
  CHD3 WILD-TYPE    112    102     64
D837V9, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            9            112
  CLUS_2            6            102
  CLUS_3            8             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHD3 MUTATED        6      4      4      2      7
  CHD3 WILD-TYPE     82     62     41     53     40
D837V10, multiclass
        clus
vv       CHD3 MUTATED CHD3 WILD-TYPE
  CLUS_1            6             82
  CLUS_2            4             62
  CLUS_3            4             41
  CLUS_4            2             53
  CLUS_5            7             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(838) Variable = THSD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THSD1 MUTATED        6     13      2      0
  THSD1 WILD-TYPE    198    124     45      3
D838V1, multiclass
        clus
vv       THSD1 MUTATED THSD1 WILD-TYPE
  CLUS_1             6             198
  CLUS_2            13             124
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THSD1 MUTATED        0      8      6      1      2
  THSD1 WILD-TYPE     39     88     38     87     78
D838V2, multiclass
        clus
vv       THSD1 MUTATED THSD1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             8              88
  CLUS_3             6              38
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THSD1 MUTATED        1      8      2      1      4
  THSD1 WILD-TYPE     25     71     71     81     54
D838V3, multiclass
        clus
vv       THSD1 MUTATED THSD1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             8              71
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THSD1 MUTATED        3      5      6      2
  THSD1 WILD-TYPE    124     46     65     67
D838V4, multiclass
        clus
vv       THSD1 MUTATED THSD1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             5              46
  CLUS_3             6              65
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THSD1 MUTATED        2      2      9      4      3
  THSD1 WILD-TYPE     82     83     76     65     44
D838V5, multiclass
        clus
vv       THSD1 MUTATED THSD1 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             2              83
  CLUS_3             9              76
  CLUS_4             4              65
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THSD1 MUTATED        7      3      2      8
  THSD1 WILD-TYPE     88     71    119     72
D838V6, multiclass
        clus
vv       THSD1 MUTATED THSD1 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             3              71
  CLUS_3             2             119
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THSD1 MUTATED        4     10      5      1      0      2
  THSD1 WILD-TYPE     48     54     67    103     40     57
D838V7, multiclass
        clus
vv       THSD1 MUTATED THSD1 WILD-TYPE
  CLUS_1             4              48
  CLUS_2            10              54
  CLUS_3             5              67
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THSD1 MUTATED       19      1      2
  THSD1 WILD-TYPE    198     74     97
D838V8, multiclass
        clus
vv       THSD1 MUTATED THSD1 WILD-TYPE
  CLUS_1            19             198
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THSD1 MUTATED        8      0      9
  THSD1 WILD-TYPE    113    108     63
D838V9, multiclass
        clus
vv       THSD1 MUTATED THSD1 WILD-TYPE
  CLUS_1             8             113
  CLUS_2             0             108
  CLUS_3             9              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THSD1 MUTATED        3      1      5      1      7
  THSD1 WILD-TYPE     85     65     40     54     40
D838V10, multiclass
        clus
vv       THSD1 MUTATED THSD1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             5              40
  CLUS_4             1              54
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(839) Variable = CTNNA1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNA1 MUTATED        2     12      1      0
  CTNNA1 WILD-TYPE    202    125     46      3
D839V1, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              2              202
  CLUS_2             12              125
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNA1 MUTATED        2      8      0      0      4
  CTNNA1 WILD-TYPE     37     88     44     88     76
D839V2, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              8               88
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              4               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNA1 MUTATED        2      3      3      2      4
  CTNNA1 WILD-TYPE     24     76     70     80     54
D839V3, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              3               76
  CLUS_3              3               70
  CLUS_4              2               80
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNA1 MUTATED        3      6      2      3
  CTNNA1 WILD-TYPE    124     45     69     66
D839V4, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              6               45
  CLUS_3              2               69
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNA1 MUTATED        1      3      9      0      2
  CTNNA1 WILD-TYPE     83     82     76     69     45
D839V5, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               82
  CLUS_3              9               76
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CTNNA1 MUTATED        1      2      4      8
  CTNNA1 WILD-TYPE     94     72    117     72
D839V6, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              4              117
  CLUS_4              8               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CTNNA1 MUTATED        5      3      3      2      2      0
  CTNNA1 WILD-TYPE     47     61     69    102     38     59
D839V7, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              3               61
  CLUS_3              3               69
  CLUS_4              2              102
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNA1 MUTATED       11      2      2
  CTNNA1 WILD-TYPE    206     73     97
D839V8, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1             11              206
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CTNNA1 MUTATED        7      2      4
  CTNNA1 WILD-TYPE    114    106     68
D839V9, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              7              114
  CLUS_2              2              106
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CTNNA1 MUTATED        4      1      4      0      4
  CTNNA1 WILD-TYPE     84     65     41     55     43
D839V10, multiclass
        clus
vv       CTNNA1 MUTATED CTNNA1 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              1               65
  CLUS_3              4               41
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(840) Variable = BANK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BANK1 MUTATED        4      7      0      0
  BANK1 WILD-TYPE    200    130     47      3
D840V1, multiclass
        clus
vv       BANK1 MUTATED BANK1 WILD-TYPE
  CLUS_1             4             200
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BANK1 MUTATED        0      6      2      0      0
  BANK1 WILD-TYPE     39     90     42     88     80
D840V2, multiclass
        clus
vv       BANK1 MUTATED BANK1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             6              90
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BANK1 MUTATED        0      3      3      1      2
  BANK1 WILD-TYPE     26     76     70     81     56
D840V3, multiclass
        clus
vv       BANK1 MUTATED BANK1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BANK1 MUTATED        1      4      2      2
  BANK1 WILD-TYPE    126     47     69     67
D840V4, multiclass
        clus
vv       BANK1 MUTATED BANK1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BANK1 MUTATED        0      2      3      1      3
  BANK1 WILD-TYPE     84     83     82     68     44
D840V5, multiclass
        clus
vv       BANK1 MUTATED BANK1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BANK1 MUTATED        3      1      0      5
  BANK1 WILD-TYPE     92     73    121     75
D840V6, multiclass
        clus
vv       BANK1 MUTATED BANK1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BANK1 MUTATED        4      3      0      2      2      0
  BANK1 WILD-TYPE     48     61     72    102     38     59
D840V7, multiclass
        clus
vv       BANK1 MUTATED BANK1 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             3              61
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BANK1 MUTATED        7      1      3
  BANK1 WILD-TYPE    210     74     96
D840V8, multiclass
        clus
vv       BANK1 MUTATED BANK1 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             1              74
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BANK1 MUTATED        4      1      2
  BANK1 WILD-TYPE    117    107     70
D840V9, multiclass
        clus
vv       BANK1 MUTATED BANK1 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BANK1 MUTATED        4      1      0      0      2
  BANK1 WILD-TYPE     84     65     45     55     45
D840V10, multiclass
        clus
vv       BANK1 MUTATED BANK1 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(841) Variable = ZNF441 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF441 MUTATED        1      8      0      0
  ZNF441 WILD-TYPE    203    129     47      3
D841V1, multiclass
        clus
vv       ZNF441 MUTATED ZNF441 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              8              129
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF441 MUTATED        1      4      2      1      0
  ZNF441 WILD-TYPE     38     92     42     87     80
D841V2, multiclass
        clus
vv       ZNF441 MUTATED ZNF441 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               92
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF441 MUTATED        0      2      4      0      3
  ZNF441 WILD-TYPE     26     77     69     82     55
D841V3, multiclass
        clus
vv       ZNF441 MUTATED ZNF441 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              4               69
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF441 MUTATED        2      6      1      0
  ZNF441 WILD-TYPE    125     45     70     69
D841V4, multiclass
        clus
vv       ZNF441 MUTATED ZNF441 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              6               45
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF441 MUTATED        0      1      6      1      1
  ZNF441 WILD-TYPE     84     84     79     68     46
D841V5, multiclass
        clus
vv       ZNF441 MUTATED ZNF441 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF441 MUTATED        2      1      1      5
  ZNF441 WILD-TYPE     93     73    120     75
D841V6, multiclass
        clus
vv       ZNF441 MUTATED ZNF441 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF441 MUTATED        4      2      1      1      0      1
  ZNF441 WILD-TYPE     48     62     71    103     40     58
D841V7, multiclass
        clus
vv       ZNF441 MUTATED ZNF441 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF441 MUTATED        8      0      1
  ZNF441 WILD-TYPE    209     75     98
D841V8, multiclass
        clus
vv       ZNF441 MUTATED ZNF441 WILD-TYPE
  CLUS_1              8              209
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF441 MUTATED        4      1      1
  ZNF441 WILD-TYPE    117    107     71
D841V9, multiclass
        clus
vv       ZNF441 MUTATED ZNF441 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              1              107
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF441 MUTATED        2      0      1      0      3
  ZNF441 WILD-TYPE     86     66     44     55     44
D841V10, multiclass
        clus
vv       ZNF441 MUTATED ZNF441 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(842) Variable = TBC1D8B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D8B MUTATED        3      5      1      0
  TBC1D8B WILD-TYPE    201    132     46      3
D842V1, multiclass
        clus
vv       TBC1D8B MUTATED TBC1D8B WILD-TYPE
  CLUS_1               3               201
  CLUS_2               5               132
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D8B MUTATED        0      2      3      2      2
  TBC1D8B WILD-TYPE     39     94     41     86     78
D842V2, multiclass
        clus
vv       TBC1D8B MUTATED TBC1D8B WILD-TYPE
  CLUS_1               0                39
  CLUS_2               2                94
  CLUS_3               3                41
  CLUS_4               2                86
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D8B MUTATED        0      5      0      1      2
  TBC1D8B WILD-TYPE     26     74     73     81     56
D842V3, multiclass
        clus
vv       TBC1D8B MUTATED TBC1D8B WILD-TYPE
  CLUS_1               0                26
  CLUS_2               5                74
  CLUS_3               0                73
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D8B MUTATED        2      1      3      2
  TBC1D8B WILD-TYPE    125     50     68     67
D842V4, multiclass
        clus
vv       TBC1D8B MUTATED TBC1D8B WILD-TYPE
  CLUS_1               2               125
  CLUS_2               1                50
  CLUS_3               3                68
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D8B MUTATED        2      3      3      1      0
  TBC1D8B WILD-TYPE     82     82     82     68     47
D842V5, multiclass
        clus
vv       TBC1D8B MUTATED TBC1D8B WILD-TYPE
  CLUS_1               2                82
  CLUS_2               3                82
  CLUS_3               3                82
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D8B MUTATED        3      1      4      1
  TBC1D8B WILD-TYPE     92     73    117     79
D842V6, multiclass
        clus
vv       TBC1D8B MUTATED TBC1D8B WILD-TYPE
  CLUS_1               3                92
  CLUS_2               1                73
  CLUS_3               4               117
  CLUS_4               1                79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TBC1D8B MUTATED        0      3      2      1      1      2
  TBC1D8B WILD-TYPE     52     61     70    103     39     57
D842V7, multiclass
        clus
vv       TBC1D8B MUTATED TBC1D8B WILD-TYPE
  CLUS_1               0                52
  CLUS_2               3                61
  CLUS_3               2                70
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               2                57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBC1D8B MUTATED        5      2      2
  TBC1D8B WILD-TYPE    212     73     97
D842V8, multiclass
        clus
vv       TBC1D8B MUTATED TBC1D8B WILD-TYPE
  CLUS_1               5               212
  CLUS_2               2                73
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TBC1D8B MUTATED        3      2      4
  TBC1D8B WILD-TYPE    118    106     68
D842V9, multiclass
        clus
vv       TBC1D8B MUTATED TBC1D8B WILD-TYPE
  CLUS_1               3               118
  CLUS_2               2               106
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D8B MUTATED        5      0      3      1      0
  TBC1D8B WILD-TYPE     83     66     42     54     47
D842V10, multiclass
        clus
vv       TBC1D8B MUTATED TBC1D8B WILD-TYPE
  CLUS_1               5                83
  CLUS_2               0                66
  CLUS_3               3                42
  CLUS_4               1                54
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(843) Variable = CD3EAP MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD3EAP MUTATED        2      7      1      0
  CD3EAP WILD-TYPE    202    130     46      3
D843V1, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              2              202
  CLUS_2              7              130
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD3EAP MUTATED        1      4      0      1      1
  CD3EAP WILD-TYPE     38     92     44     87     79
D843V2, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               92
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD3EAP MUTATED        1      3      1      1      3
  CD3EAP WILD-TYPE     25     76     72     81     55
D843V3, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD3EAP MUTATED        3      4      1      1
  CD3EAP WILD-TYPE    124     47     70     68
D843V4, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              3              124
  CLUS_2              4               47
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD3EAP MUTATED        0      2      4      1      2
  CD3EAP WILD-TYPE     84     83     81     68     45
D843V5, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD3EAP MUTATED        4      1      2      2
  CD3EAP WILD-TYPE     91     73    119     78
D843V6, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              4               91
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD3EAP MUTATED        3      4      1      1      0      1
  CD3EAP WILD-TYPE     49     60     71    103     40     58
D843V7, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              3               49
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CD3EAP MUTATED        8      1      1
  CD3EAP WILD-TYPE    209     74     98
D843V8, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              8              209
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CD3EAP MUTATED        5      0      2
  CD3EAP WILD-TYPE    116    108     70
D843V9, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              5              116
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD3EAP MUTATED        1      0      2      1      3
  CD3EAP WILD-TYPE     87     66     43     54     44
D843V10, multiclass
        clus
vv       CD3EAP MUTATED CD3EAP WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(844) Variable = EFNA4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFNA4 MUTATED        0      5      0      0
  EFNA4 WILD-TYPE    204    132     47      3
D844V1, multiclass
        clus
vv       EFNA4 MUTATED EFNA4 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             5             132
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFNA4 MUTATED        0      5      0      0      0
  EFNA4 WILD-TYPE     39     91     44     88     80
D844V2, multiclass
        clus
vv       EFNA4 MUTATED EFNA4 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFNA4 MUTATED        0      0      2      0      2
  EFNA4 WILD-TYPE     26     79     71     82     56
D844V3, multiclass
        clus
vv       EFNA4 MUTATED EFNA4 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              79
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFNA4 MUTATED        0      4      0      0
  EFNA4 WILD-TYPE    127     47     71     69
D844V4, multiclass
        clus
vv       EFNA4 MUTATED EFNA4 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             4              47
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFNA4 MUTATED        0      1      3      0      1
  EFNA4 WILD-TYPE     84     84     82     69     46
D844V5, multiclass
        clus
vv       EFNA4 MUTATED EFNA4 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             3              82
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFNA4 MUTATED        2      0      0      3
  EFNA4 WILD-TYPE     93     74    121     77
D844V6, multiclass
        clus
vv       EFNA4 MUTATED EFNA4 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EFNA4 MUTATED        2      1      1      0      1      0
  EFNA4 WILD-TYPE     50     63     71    104     39     59
D844V7, multiclass
        clus
vv       EFNA4 MUTATED EFNA4 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             1              63
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFNA4 MUTATED        4      0      1
  EFNA4 WILD-TYPE    213     75     98
D844V8, multiclass
        clus
vv       EFNA4 MUTATED EFNA4 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFNA4 MUTATED        3      1      1
  EFNA4 WILD-TYPE    118    107     71
D844V9, multiclass
        clus
vv       EFNA4 MUTATED EFNA4 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFNA4 MUTATED        1      0      1      0      3
  EFNA4 WILD-TYPE     87     66     44     55     44
D844V10, multiclass
        clus
vv       EFNA4 MUTATED EFNA4 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(845) Variable = COL20A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL20A1 MUTATED        6     12      2      0
  COL20A1 WILD-TYPE    198    125     45      3
D845V1, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               6               198
  CLUS_2              12               125
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL20A1 MUTATED        2     11      1      2      3
  COL20A1 WILD-TYPE     37     85     43     86     77
D845V2, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               2                37
  CLUS_2              11                85
  CLUS_3               1                43
  CLUS_4               2                86
  CLUS_5               3                77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL20A1 MUTATED        1      5      3      1      5
  COL20A1 WILD-TYPE     25     74     70     81     53
D845V3, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               5                74
  CLUS_3               3                70
  CLUS_4               1                81
  CLUS_5               5                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL20A1 MUTATED        4      7      3      1
  COL20A1 WILD-TYPE    123     44     68     68
D845V4, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               4               123
  CLUS_2               7                44
  CLUS_3               3                68
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL20A1 MUTATED        1      3     12      0      3
  COL20A1 WILD-TYPE     83     82     73     69     44
D845V5, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               3                82
  CLUS_3              12                73
  CLUS_4               0                69
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  COL20A1 MUTATED        3      4      3      9
  COL20A1 WILD-TYPE     92     70    118     71
D845V6, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               4                70
  CLUS_3               3               118
  CLUS_4               9                71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  COL20A1 MUTATED        5      5      3      3      1      3
  COL20A1 WILD-TYPE     47     59     69    101     39     56
D845V7, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               5                47
  CLUS_2               5                59
  CLUS_3               3                69
  CLUS_4               3               101
  CLUS_5               1                39
  CLUS_6               3                56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL20A1 MUTATED       14      3      3
  COL20A1 WILD-TYPE    203     72     96
D845V8, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1              14               203
  CLUS_2               3                72
  CLUS_3               3                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  COL20A1 MUTATED        9      5      5
  COL20A1 WILD-TYPE    112    103     67
D845V9, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               9               112
  CLUS_2               5               103
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  COL20A1 MUTATED        4      3      3      3      6
  COL20A1 WILD-TYPE     84     63     42     52     41
D845V10, multiclass
        clus
vv       COL20A1 MUTATED COL20A1 WILD-TYPE
  CLUS_1               4                84
  CLUS_2               3                63
  CLUS_3               3                42
  CLUS_4               3                52
  CLUS_5               6                41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(846) Variable = SEC16B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC16B MUTATED        1      5      1      0
  SEC16B WILD-TYPE    203    132     46      3
D846V1, multiclass
        clus
vv       SEC16B MUTATED SEC16B WILD-TYPE
  CLUS_1              1              203
  CLUS_2              5              132
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC16B MUTATED        0      6      0      0      0
  SEC16B WILD-TYPE     39     90     44     88     80
D846V2, multiclass
        clus
vv       SEC16B MUTATED SEC16B WILD-TYPE
  CLUS_1              0               39
  CLUS_2              6               90
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC16B MUTATED        0      2      3      1      1
  SEC16B WILD-TYPE     26     77     70     81     57
D846V3, multiclass
        clus
vv       SEC16B MUTATED SEC16B WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC16B MUTATED        1      3      2      1
  SEC16B WILD-TYPE    126     48     69     68
D846V4, multiclass
        clus
vv       SEC16B MUTATED SEC16B WILD-TYPE
  CLUS_1              1              126
  CLUS_2              3               48
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC16B MUTATED        0      2      3      0      2
  SEC16B WILD-TYPE     84     83     82     69     45
D846V5, multiclass
        clus
vv       SEC16B MUTATED SEC16B WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SEC16B MUTATED        0      2      0      5
  SEC16B WILD-TYPE     95     72    121     75
D846V6, multiclass
        clus
vv       SEC16B MUTATED SEC16B WILD-TYPE
  CLUS_1              0               95
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SEC16B MUTATED        3      1      1      2      0      0
  SEC16B WILD-TYPE     49     63     71    102     40     59
D846V7, multiclass
        clus
vv       SEC16B MUTATED SEC16B WILD-TYPE
  CLUS_1              3               49
  CLUS_2              1               63
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEC16B MUTATED        4      2      1
  SEC16B WILD-TYPE    213     73     98
D846V8, multiclass
        clus
vv       SEC16B MUTATED SEC16B WILD-TYPE
  CLUS_1              4              213
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SEC16B MUTATED        1      2      1
  SEC16B WILD-TYPE    120    106     71
D846V9, multiclass
        clus
vv       SEC16B MUTATED SEC16B WILD-TYPE
  CLUS_1              1              120
  CLUS_2              2              106
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SEC16B MUTATED        1      1      1      0      1
  SEC16B WILD-TYPE     87     65     44     55     46
D846V10, multiclass
        clus
vv       SEC16B MUTATED SEC16B WILD-TYPE
  CLUS_1              1               87
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(847) Variable = SIX3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIX3 MUTATED        1      8      1      0
  SIX3 WILD-TYPE    203    129     46      3
D847V1, multiclass
        clus
vv       SIX3 MUTATED SIX3 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            8            129
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIX3 MUTATED        0      6      0      1      0
  SIX3 WILD-TYPE     39     90     44     87     80
D847V2, multiclass
        clus
vv       SIX3 MUTATED SIX3 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            6             90
  CLUS_3            0             44
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIX3 MUTATED        0      2      2      1      2
  SIX3 WILD-TYPE     26     77     71     81     56
D847V3, multiclass
        clus
vv       SIX3 MUTATED SIX3 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIX3 MUTATED        1      4      1      1
  SIX3 WILD-TYPE    126     47     70     68
D847V4, multiclass
        clus
vv       SIX3 MUTATED SIX3 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            4             47
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIX3 MUTATED        1      3      3      1      2
  SIX3 WILD-TYPE     83     82     82     68     45
D847V5, multiclass
        clus
vv       SIX3 MUTATED SIX3 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            3             82
  CLUS_3            3             82
  CLUS_4            1             68
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SIX3 MUTATED        4      1      0      5
  SIX3 WILD-TYPE     91     73    121     75
D847V6, multiclass
        clus
vv       SIX3 MUTATED SIX3 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SIX3 MUTATED        4      3      0      2      1      0
  SIX3 WILD-TYPE     48     61     72    102     39     59
D847V7, multiclass
        clus
vv       SIX3 MUTATED SIX3 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            3             61
  CLUS_3            0             72
  CLUS_4            2            102
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SIX3 MUTATED        7      1      2
  SIX3 WILD-TYPE    210     74     97
D847V8, multiclass
        clus
vv       SIX3 MUTATED SIX3 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SIX3 MUTATED        4      1      2
  SIX3 WILD-TYPE    117    107     70
D847V9, multiclass
        clus
vv       SIX3 MUTATED SIX3 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SIX3 MUTATED        2      0      1      0      4
  SIX3 WILD-TYPE     86     66     44     55     43
D847V10, multiclass
        clus
vv       SIX3 MUTATED SIX3 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(848) Variable = SLC7A13 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A13 MUTATED        0     10      1      0
  SLC7A13 WILD-TYPE    204    127     46      3
D848V1, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               0               204
  CLUS_2              10               127
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC7A13 MUTATED        0      6      2      0      0
  SLC7A13 WILD-TYPE     39     90     42     88     80
D848V2, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               6                90
  CLUS_3               2                42
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC7A13 MUTATED        0      1      4      0      3
  SLC7A13 WILD-TYPE     26     78     69     82     55
D848V3, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                78
  CLUS_3               4                69
  CLUS_4               0                82
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A13 MUTATED        3      5      0      0
  SLC7A13 WILD-TYPE    124     46     71     69
D848V4, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               5                46
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC7A13 MUTATED        0      1      5      3      2
  SLC7A13 WILD-TYPE     84     84     80     66     45
D848V5, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               5                80
  CLUS_4               3                66
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC7A13 MUTATED        5      2      0      4
  SLC7A13 WILD-TYPE     90     72    121     76
D848V6, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               5                90
  CLUS_2               2                72
  CLUS_3               0               121
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC7A13 MUTATED        3      6      1      1      0      0
  SLC7A13 WILD-TYPE     49     58     71    103     40     59
D848V7, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               6                58
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC7A13 MUTATED       10      1      0
  SLC7A13 WILD-TYPE    207     74     99
D848V8, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1              10               207
  CLUS_2               1                74
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC7A13 MUTATED        4      1      2
  SLC7A13 WILD-TYPE    117    107     70
D848V9, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               1               107
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC7A13 MUTATED        1      1      2      0      3
  SLC7A13 WILD-TYPE     87     65     43     55     44
D848V10, multiclass
        clus
vv       SLC7A13 MUTATED SLC7A13 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(849) Variable = EMILIN3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMILIN3 MUTATED        2     10      1      1
  EMILIN3 WILD-TYPE    202    127     46      2
D849V1, multiclass
        clus
vv       EMILIN3 MUTATED EMILIN3 WILD-TYPE
  CLUS_1               2               202
  CLUS_2              10               127
  CLUS_3               1                46
  CLUS_4               1                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMILIN3 MUTATED        1      7      1      1      2
  EMILIN3 WILD-TYPE     38     89     43     87     78
D849V2, multiclass
        clus
vv       EMILIN3 MUTATED EMILIN3 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               7                89
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMILIN3 MUTATED        2      2      6      1      2
  EMILIN3 WILD-TYPE     24     77     67     81     56
D849V3, multiclass
        clus
vv       EMILIN3 MUTATED EMILIN3 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               2                77
  CLUS_3               6                67
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMILIN3 MUTATED        5      5      1      2
  EMILIN3 WILD-TYPE    122     46     70     67
D849V4, multiclass
        clus
vv       EMILIN3 MUTATED EMILIN3 WILD-TYPE
  CLUS_1               5               122
  CLUS_2               5                46
  CLUS_3               1                70
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMILIN3 MUTATED        0      4      5      0      2
  EMILIN3 WILD-TYPE     84     81     80     69     45
D849V5, multiclass
        clus
vv       EMILIN3 MUTATED EMILIN3 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               4                81
  CLUS_3               5                80
  CLUS_4               0                69
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMILIN3 MUTATED        1      3      2      5
  EMILIN3 WILD-TYPE     94     71    119     75
D849V6, multiclass
        clus
vv       EMILIN3 MUTATED EMILIN3 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               3                71
  CLUS_3               2               119
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EMILIN3 MUTATED        2      6      3      2      1      0
  EMILIN3 WILD-TYPE     50     58     69    102     39     59
D849V7, multiclass
        clus
vv       EMILIN3 MUTATED EMILIN3 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               6                58
  CLUS_3               3                69
  CLUS_4               2               102
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EMILIN3 MUTATED       10      2      2
  EMILIN3 WILD-TYPE    207     73     97
D849V8, multiclass
        clus
vv       EMILIN3 MUTATED EMILIN3 WILD-TYPE
  CLUS_1              10               207
  CLUS_2               2                73
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EMILIN3 MUTATED        4      2      5
  EMILIN3 WILD-TYPE    117    106     67
D849V9, multiclass
        clus
vv       EMILIN3 MUTATED EMILIN3 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               2               106
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMILIN3 MUTATED        4      2      4      0      1
  EMILIN3 WILD-TYPE     84     64     41     55     46
D849V10, multiclass
        clus
vv       EMILIN3 MUTATED EMILIN3 WILD-TYPE
  CLUS_1               4                84
  CLUS_2               2                64
  CLUS_3               4                41
  CLUS_4               0                55
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(850) Variable = EPB41L5 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB41L5 MUTATED        0      8      2      0
  EPB41L5 WILD-TYPE    204    129     45      3
D850V1, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               8               129
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41L5 MUTATED        2      5      1      0      0
  EPB41L5 WILD-TYPE     37     91     43     88     80
D850V2, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               2                37
  CLUS_2               5                91
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41L5 MUTATED        1      4      2      0      2
  EPB41L5 WILD-TYPE     25     75     71     82     56
D850V3, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               4                75
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB41L5 MUTATED        1      6      2      0
  EPB41L5 WILD-TYPE    126     45     69     69
D850V4, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               6                45
  CLUS_3               2                69
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41L5 MUTATED        1      0      6      2      0
  EPB41L5 WILD-TYPE     83     85     79     67     47
D850V5, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                85
  CLUS_3               6                79
  CLUS_4               2                67
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB41L5 MUTATED        3      0      1      5
  EPB41L5 WILD-TYPE     92     74    120     75
D850V6, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               0                74
  CLUS_3               1               120
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPB41L5 MUTATED        3      2      2      1      1      1
  EPB41L5 WILD-TYPE     49     62     70    103     39     58
D850V7, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               2                62
  CLUS_3               2                70
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EPB41L5 MUTATED        9      0      1
  EPB41L5 WILD-TYPE    208     75     98
D850V8, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               9               208
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EPB41L5 MUTATED        4      2      2
  EPB41L5 WILD-TYPE    117    106     70
D850V9, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               2               106
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41L5 MUTATED        3      0      1      0      4
  EPB41L5 WILD-TYPE     85     66     44     55     43
D850V10, multiclass
        clus
vv       EPB41L5 MUTATED EPB41L5 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(851) Variable = UTY MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UTY MUTATED        0      3      0      0
  UTY WILD-TYPE    204    134     47      3
D851V1, multiclass
        clus
vv       UTY MUTATED UTY WILD-TYPE
  CLUS_1           0           204
  CLUS_2           3           134
  CLUS_3           0            47
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UTY MUTATED        0      1      1      0      0
  UTY WILD-TYPE     39     95     43     88     80
D851V2, multiclass
[1] "Remove cluster labels:" "UTY MUTATED"           
clus
  UTY MUTATED UTY WILD-TYPE 
            2           345 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-B7-A5TI    TCGA-B7-A5TJ    TCGA-B7-A5TK 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-B7-A5TN    TCGA-BR-6452    TCGA-BR-6453    TCGA-BR-6454    TCGA-BR-6455 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563    TCGA-BR-6564 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706    TCGA-BR-6707 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802    TCGA-BR-6803 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197    TCGA-BR-7703    TCGA-BR-7704 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-7707    TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717    TCGA-BR-7722 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-7723    TCGA-BR-7901    TCGA-BR-7957    TCGA-BR-7958    TCGA-BR-7959 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8058    TCGA-BR-8059    TCGA-BR-8060    TCGA-BR-8077    TCGA-BR-8078 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8080    TCGA-BR-8081    TCGA-BR-8284    TCGA-BR-8285    TCGA-BR-8286 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8289    TCGA-BR-8291    TCGA-BR-8295    TCGA-BR-8297    TCGA-BR-8361 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8363    TCGA-BR-8364    TCGA-BR-8365    TCGA-BR-8366    TCGA-BR-8367 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8368    TCGA-BR-8369    TCGA-BR-8370    TCGA-BR-8371    TCGA-BR-8372 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8373    TCGA-BR-8380    TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8483    TCGA-BR-8484    TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8487 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8588    TCGA-BR-8589    TCGA-BR-8590    TCGA-BR-8591    TCGA-BR-8592 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8676    TCGA-BR-8677    TCGA-BR-8678    TCGA-BR-8679    TCGA-BR-8680 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8686    TCGA-BR-8687    TCGA-BR-8690 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A44T    TCGA-BR-A44U    TCGA-BR-A452    TCGA-BR-A453    TCGA-BR-A4CQ 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4CR    TCGA-BR-A4CS    TCGA-BR-A4IU    TCGA-BR-A4IV    TCGA-BR-A4IY 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4IZ    TCGA-BR-A4J1    TCGA-BR-A4J2    TCGA-BR-A4J4    TCGA-BR-A4J5 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8    TCGA-BR-A4PD    TCGA-BR-A4PE 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4PF    TCGA-BR-A4QI    TCGA-BR-A4QL    TCGA-BR-A4QM    TCGA-CD-5798 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802    TCGA-CD-5803 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-5804    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525    TCGA-CD-8526 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-8527    TCGA-CD-8528    TCGA-CD-8529    TCGA-CD-8530    TCGA-CD-8531 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-8532    TCGA-CD-8533    TCGA-CD-8534    TCGA-CD-8535    TCGA-CD-8536 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-A486    TCGA-CD-A487    TCGA-CD-A489    TCGA-CD-A48A    TCGA-CD-A48C 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-A4MG    TCGA-CD-A4MH    TCGA-CD-A4MI    TCGA-CD-A4MJ    TCGA-CG-4437 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-4441    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723    TCGA-CG-5724 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5730 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-5732    TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-5579    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-6822    TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8573    TCGA-D7-8574 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-8575    TCGA-D7-8576    TCGA-D7-8578    TCGA-D7-8579    TCGA-D7-A4YT 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A4YU    TCGA-D7-A4YV    TCGA-D7-A4YX    TCGA-D7-A4YY    TCGA-D7-A4Z0 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A6ET    TCGA-D7-A6EV    TCGA-D7-A6EX    TCGA-D7-A6EY    TCGA-D7-A6EZ 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A6F0    TCGA-D7-A6F2    TCGA-D7-A747    TCGA-D7-A748    TCGA-D7-A74A 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A74B    TCGA-EQ-5647    TCGA-EQ-8122    TCGA-EQ-A4SO    TCGA-F1-6177 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-F1-6874    TCGA-F1-6875    TCGA-F1-A448    TCGA-F1-A72C    TCGA-FP-7735 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-FP-7829    TCGA-FP-7916    TCGA-FP-7998    TCGA-FP-8099    TCGA-FP-8209 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-FP-8210    TCGA-FP-8211    TCGA-FP-8631    TCGA-FP-A4BE    TCGA-FP-A4BF 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-FP-A8CX    TCGA-FP-A9TM    TCGA-HF-7131    TCGA-HF-7132    TCGA-HF-7133 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HF-7134    TCGA-HF-7136    TCGA-HF-A5NB    TCGA-HJ-7597    TCGA-HU-8238 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-8243    TCGA-HU-8244    TCGA-HU-8249    TCGA-HU-8602    TCGA-HU-8604 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-8608    TCGA-HU-8610    TCGA-HU-A4G2    TCGA-HU-A4G3    TCGA-HU-A4G6 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4G8    TCGA-HU-A4G9    TCGA-HU-A4GC    TCGA-HU-A4GD    TCGA-HU-A4GF 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4GH    TCGA-HU-A4GJ    TCGA-HU-A4GN    TCGA-HU-A4GP    TCGA-HU-A4GQ 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4GT    TCGA-HU-A4GU    TCGA-HU-A4GX    TCGA-HU-A4GY    TCGA-HU-A4H0 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4H2    TCGA-HU-A4H3    TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4H8    TCGA-HU-A4HB    TCGA-HU-A4HD    TCGA-IN-7806    TCGA-IN-7808 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IN-8462    TCGA-IN-8663    TCGA-IN-A6RI    TCGA-IN-A6RJ    TCGA-IN-A6RL 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IN-A6RN    TCGA-IN-A6RO    TCGA-IN-A6RP    TCGA-IN-A6RR    TCGA-IN-A6RS 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IN-A7NR    TCGA-IN-A7NT    TCGA-IN-A7NU    TCGA-IN-AB1V    TCGA-IN-AB1X 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IP-7968    TCGA-KB-A6F5    TCGA-KB-A6F7    TCGA-KB-A93G    TCGA-KB-A93J 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-MX-A5UG    TCGA-MX-A5UJ    TCGA-MX-A663    TCGA-MX-A666    TCGA-R5-A7O7 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-R5-A7ZE    TCGA-R5-A7ZF    TCGA-R5-A7ZI    TCGA-R5-A7ZR    TCGA-R5-A804 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-R5-A805    TCGA-RD-A7BS    TCGA-RD-A7BT    TCGA-RD-A7BW    TCGA-RD-A7C1 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-RD-A8MV    TCGA-RD-A8MW    TCGA-RD-A8N0    TCGA-RD-A8N1    TCGA-RD-A8N2 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-RD-A8N4    TCGA-RD-A8N5    TCGA-RD-A8N6    TCGA-RD-A8N9    TCGA-SW-A7EA 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-SW-A7EB    TCGA-VQ-A8DL    TCGA-VQ-A8DT    TCGA-VQ-A8DU    TCGA-VQ-A8DV 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-A8DZ    TCGA-VQ-A8E2    TCGA-VQ-A8E7    TCGA-VQ-A8P2    TCGA-VQ-A8P3 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-A8PE    TCGA-VQ-A8PK    TCGA-VQ-A8PM    TCGA-VQ-A8PQ    TCGA-VQ-A91Q 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-A91U    TCGA-VQ-A91V    TCGA-VQ-A92D    TCGA-VQ-A94T    TCGA-VQ-AA64 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-AA68    TCGA-VQ-AA69    TCGA-VQ-AA6A    TCGA-VQ-AA6B    TCGA-VQ-AA6F 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-AA6G    TCGA-VQ-AA6I    TCGA-VQ-AA6J    TCGA-VQ-AA6K    TCGA-ZA-A8F6 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UTY MUTATED        0      3      0      0      0
  UTY WILD-TYPE     26     76     73     82     58
D851V3, multiclass
        clus
vv       UTY MUTATED UTY WILD-TYPE
  CLUS_1           0            26
  CLUS_2           3            76
  CLUS_3           0            73
  CLUS_4           0            82
  CLUS_5           0            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UTY MUTATED        0      2      1      0
  UTY WILD-TYPE    127     49     70     69
D851V4, multiclass
        clus
vv       UTY MUTATED UTY WILD-TYPE
  CLUS_1           0           127
  CLUS_2           2            49
  CLUS_3           1            70
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UTY MUTATED        0      1      0      0      0
  UTY WILD-TYPE     84     84     85     69     47
D851V5, multiclass
[1] "Remove cluster labels:" "UTY MUTATED"           
clus
  UTY MUTATED UTY WILD-TYPE 
            1           369 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-B7-A5TI    TCGA-B7-A5TJ    TCGA-B7-A5TK 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-B7-A5TN    TCGA-BR-4187    TCGA-BR-4191    TCGA-BR-4201    TCGA-BR-4253 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-4255    TCGA-BR-4256    TCGA-BR-4257    TCGA-BR-4267    TCGA-BR-4279 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-4280    TCGA-BR-4292    TCGA-BR-4294    TCGA-BR-4357    TCGA-BR-4361 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-4362    TCGA-BR-4363    TCGA-BR-4366    TCGA-BR-4368    TCGA-BR-4369 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-4370    TCGA-BR-4371    TCGA-BR-6452    TCGA-BR-6453    TCGA-BR-6454 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6455    TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6801    TCGA-BR-6802    TCGA-BR-6803 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197    TCGA-BR-7703    TCGA-BR-7704 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-7707    TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717    TCGA-BR-7722 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-7723    TCGA-BR-7901    TCGA-BR-7957    TCGA-BR-7958    TCGA-BR-7959 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8058    TCGA-BR-8059    TCGA-BR-8060    TCGA-BR-8077    TCGA-BR-8078 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8080    TCGA-BR-8081    TCGA-BR-8284    TCGA-BR-8286    TCGA-BR-8289 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8291    TCGA-BR-8295    TCGA-BR-8297    TCGA-BR-8361    TCGA-BR-8363 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8364    TCGA-BR-8365    TCGA-BR-8366    TCGA-BR-8367    TCGA-BR-8368 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8369    TCGA-BR-8371    TCGA-BR-8372    TCGA-BR-8373    TCGA-BR-8380 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384    TCGA-BR-8483    TCGA-BR-8484 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8487    TCGA-BR-8588    TCGA-BR-8589 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8590    TCGA-BR-8591    TCGA-BR-8592    TCGA-BR-8676    TCGA-BR-8677 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8678    TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8686    TCGA-BR-8687    TCGA-BR-8690    TCGA-BR-A44T    TCGA-BR-A44U 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A452    TCGA-BR-A453    TCGA-BR-A4CR    TCGA-BR-A4CS    TCGA-BR-A4IU 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4IV    TCGA-BR-A4IY    TCGA-BR-A4IZ    TCGA-BR-A4J1    TCGA-BR-A4J2 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4J4    TCGA-BR-A4J5    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4PD    TCGA-BR-A4PE    TCGA-BR-A4PF    TCGA-BR-A4QI    TCGA-BR-A4QL 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4QM    TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-5803    TCGA-CD-5804    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-8526    TCGA-CD-8527    TCGA-CD-8528    TCGA-CD-8529    TCGA-CD-8530 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-8531    TCGA-CD-8532    TCGA-CD-8533    TCGA-CD-8534    TCGA-CD-8535 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-8536    TCGA-CD-A486    TCGA-CD-A487    TCGA-CD-A489    TCGA-CD-A48A 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-A48C    TCGA-CD-A4MG    TCGA-CD-A4MH    TCGA-CD-A4MI    TCGA-CD-A4MJ 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306    TCGA-CG-4436 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441    TCGA-CG-4442 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4460    TCGA-CG-4462 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4474    TCGA-CG-4475 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-4476    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5732    TCGA-CG-5734 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8573 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-8574    TCGA-D7-8575    TCGA-D7-8576    TCGA-D7-8578    TCGA-D7-8579 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV    TCGA-D7-A4YX    TCGA-D7-A4YY 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A4Z0    TCGA-D7-A6EV    TCGA-D7-A6EX    TCGA-D7-A6EY    TCGA-D7-A6EZ 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A6F0    TCGA-D7-A6F2    TCGA-D7-A747    TCGA-D7-A748    TCGA-D7-A74A 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-EQ-8122    TCGA-EQ-A4SO    TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-F1-A448    TCGA-F1-A72C    TCGA-FP-7735    TCGA-FP-7829    TCGA-FP-7916 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-FP-7998    TCGA-FP-8099    TCGA-FP-8209    TCGA-FP-8210    TCGA-FP-8211 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-FP-8631    TCGA-FP-A4BE    TCGA-FP-A4BF    TCGA-FP-A8CX    TCGA-FP-A9TM 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HF-7131    TCGA-HF-7132    TCGA-HF-7133    TCGA-HF-7134    TCGA-HF-7136 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HF-A5NB    TCGA-HJ-7597    TCGA-HU-8238    TCGA-HU-8243    TCGA-HU-8244 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-8249    TCGA-HU-8602    TCGA-HU-8604    TCGA-HU-8608    TCGA-HU-8610 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4G2    TCGA-HU-A4G3    TCGA-HU-A4G6    TCGA-HU-A4G8    TCGA-HU-A4G9 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4GC    TCGA-HU-A4GD    TCGA-HU-A4GF    TCGA-HU-A4GH    TCGA-HU-A4GJ 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4GN    TCGA-HU-A4GP    TCGA-HU-A4GQ    TCGA-HU-A4GT    TCGA-HU-A4GU 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4GX    TCGA-HU-A4GY    TCGA-HU-A4H0    TCGA-HU-A4H2    TCGA-HU-A4H3 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-HU-A4H8    TCGA-HU-A4HB 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4HD    TCGA-IN-7806    TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IN-A6RI    TCGA-IN-A6RJ    TCGA-IN-A6RL    TCGA-IN-A6RN    TCGA-IN-A6RO 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IN-A6RR    TCGA-IN-A6RS    TCGA-IN-A7NR    TCGA-IN-A7NT    TCGA-IN-A7NU 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IN-AB1V    TCGA-IN-AB1X    TCGA-IP-7968    TCGA-KB-A6F7    TCGA-KB-A93G 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-KB-A93J    TCGA-MX-A5UG    TCGA-MX-A5UJ    TCGA-MX-A663    TCGA-MX-A666 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-R5-A7O7    TCGA-R5-A7ZE    TCGA-R5-A7ZF    TCGA-R5-A7ZI    TCGA-R5-A7ZR 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-R5-A805    TCGA-RD-A7BS    TCGA-RD-A7BT    TCGA-RD-A7BW    TCGA-RD-A7C1 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-RD-A8MV    TCGA-RD-A8MW    TCGA-RD-A8N0    TCGA-RD-A8N1    TCGA-RD-A8N2 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-RD-A8N4    TCGA-RD-A8N5    TCGA-RD-A8N6    TCGA-RD-A8N9    TCGA-SW-A7EA 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-SW-A7EB    TCGA-VQ-A8DT    TCGA-VQ-A8DU    TCGA-VQ-A8DV    TCGA-VQ-A8DZ 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-A8E2    TCGA-VQ-A8E7    TCGA-VQ-A8P2    TCGA-VQ-A8P3    TCGA-VQ-A8PE 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-A8PK    TCGA-VQ-A8PM    TCGA-VQ-A8PQ    TCGA-VQ-A91Q    TCGA-VQ-A91U 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-A91V    TCGA-VQ-A92D    TCGA-VQ-A94T    TCGA-VQ-AA64    TCGA-VQ-AA68 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-AA69    TCGA-VQ-AA6A    TCGA-VQ-AA6B    TCGA-VQ-AA6F    TCGA-VQ-AA6G 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-AA6I    TCGA-VQ-AA6J    TCGA-VQ-AA6K    TCGA-ZA-A8F6 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UTY MUTATED        0      0      0      1
  UTY WILD-TYPE     95     74    121     79
D851V6, multiclass
[1] "Remove cluster labels:" "UTY MUTATED"           
clus
  UTY MUTATED UTY WILD-TYPE 
            1           369 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-B7-A5TI    TCGA-B7-A5TJ    TCGA-B7-A5TK 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-B7-A5TN    TCGA-BR-4187    TCGA-BR-4191    TCGA-BR-4201    TCGA-BR-4253 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-4255    TCGA-BR-4256    TCGA-BR-4257    TCGA-BR-4267    TCGA-BR-4279 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-4280    TCGA-BR-4292    TCGA-BR-4294    TCGA-BR-4357    TCGA-BR-4361 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-4362    TCGA-BR-4363    TCGA-BR-4366    TCGA-BR-4368    TCGA-BR-4369 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-4370    TCGA-BR-4371    TCGA-BR-6452    TCGA-BR-6453    TCGA-BR-6454 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6455    TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6564    TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6707    TCGA-BR-6709    TCGA-BR-6801    TCGA-BR-6802    TCGA-BR-6803 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197    TCGA-BR-7703    TCGA-BR-7704 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-7707    TCGA-BR-7715    TCGA-BR-7716    TCGA-BR-7717    TCGA-BR-7722 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-7723    TCGA-BR-7901    TCGA-BR-7957    TCGA-BR-7958    TCGA-BR-7959 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8058    TCGA-BR-8059    TCGA-BR-8060    TCGA-BR-8077    TCGA-BR-8078 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8080    TCGA-BR-8081    TCGA-BR-8284    TCGA-BR-8286    TCGA-BR-8289 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8291    TCGA-BR-8295    TCGA-BR-8297    TCGA-BR-8361    TCGA-BR-8363 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8364    TCGA-BR-8365    TCGA-BR-8366    TCGA-BR-8367    TCGA-BR-8368 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8369    TCGA-BR-8371    TCGA-BR-8372    TCGA-BR-8373    TCGA-BR-8380 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384    TCGA-BR-8483    TCGA-BR-8484 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8487    TCGA-BR-8588    TCGA-BR-8589 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8590    TCGA-BR-8591    TCGA-BR-8592    TCGA-BR-8676    TCGA-BR-8677 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8678    TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8686    TCGA-BR-8687    TCGA-BR-8690    TCGA-BR-A44T    TCGA-BR-A44U 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A452    TCGA-BR-A453    TCGA-BR-A4CR    TCGA-BR-A4CS    TCGA-BR-A4IU 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4IV    TCGA-BR-A4IY    TCGA-BR-A4IZ    TCGA-BR-A4J1    TCGA-BR-A4J2 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4J4    TCGA-BR-A4J5    TCGA-BR-A4J6    TCGA-BR-A4J7    TCGA-BR-A4J8 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4PD    TCGA-BR-A4PE    TCGA-BR-A4PF    TCGA-BR-A4QI    TCGA-BR-A4QL 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4QM    TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-5803    TCGA-CD-5804    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-8526    TCGA-CD-8527    TCGA-CD-8528    TCGA-CD-8529    TCGA-CD-8530 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-8531    TCGA-CD-8532    TCGA-CD-8533    TCGA-CD-8534    TCGA-CD-8535 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-8536    TCGA-CD-A486    TCGA-CD-A487    TCGA-CD-A489    TCGA-CD-A48A 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-A48C    TCGA-CD-A4MG    TCGA-CD-A4MH    TCGA-CD-A4MI    TCGA-CD-A4MJ 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-4301    TCGA-CG-4304    TCGA-CG-4305    TCGA-CG-4306    TCGA-CG-4436 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-4437    TCGA-CG-4438    TCGA-CG-4440    TCGA-CG-4441    TCGA-CG-4442 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-4443    TCGA-CG-4444    TCGA-CG-4449    TCGA-CG-4460    TCGA-CG-4462 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-4465    TCGA-CG-4466    TCGA-CG-4469    TCGA-CG-4474    TCGA-CG-4475 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-4476    TCGA-CG-4477    TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-5719    TCGA-CG-5720    TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-5724    TCGA-CG-5725    TCGA-CG-5726    TCGA-CG-5732    TCGA-CG-5734 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-6521    TCGA-D7-6522    TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-6527    TCGA-D7-6528    TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-6820    TCGA-D7-6822    TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8573 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-8574    TCGA-D7-8575    TCGA-D7-8576    TCGA-D7-8578    TCGA-D7-8579 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV    TCGA-D7-A4YX    TCGA-D7-A4YY 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A4Z0    TCGA-D7-A6EV    TCGA-D7-A6EX    TCGA-D7-A6EY    TCGA-D7-A6EZ 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A6F0    TCGA-D7-A6F2    TCGA-D7-A747    TCGA-D7-A748    TCGA-D7-A74A 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-EQ-8122    TCGA-EQ-A4SO    TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-F1-A448    TCGA-F1-A72C    TCGA-FP-7735    TCGA-FP-7829    TCGA-FP-7916 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-FP-7998    TCGA-FP-8099    TCGA-FP-8209    TCGA-FP-8210    TCGA-FP-8211 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-FP-8631    TCGA-FP-A4BE    TCGA-FP-A4BF    TCGA-FP-A8CX    TCGA-FP-A9TM 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HF-7131    TCGA-HF-7132    TCGA-HF-7133    TCGA-HF-7134    TCGA-HF-7136 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HF-A5NB    TCGA-HJ-7597    TCGA-HU-8238    TCGA-HU-8243    TCGA-HU-8244 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-8249    TCGA-HU-8602    TCGA-HU-8604    TCGA-HU-8608    TCGA-HU-8610 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4G2    TCGA-HU-A4G3    TCGA-HU-A4G6    TCGA-HU-A4G8    TCGA-HU-A4G9 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4GC    TCGA-HU-A4GD    TCGA-HU-A4GF    TCGA-HU-A4GH    TCGA-HU-A4GJ 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4GN    TCGA-HU-A4GP    TCGA-HU-A4GQ    TCGA-HU-A4GT    TCGA-HU-A4GU 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4GX    TCGA-HU-A4GY    TCGA-HU-A4H0    TCGA-HU-A4H2    TCGA-HU-A4H3 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-HU-A4H8    TCGA-HU-A4HB 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4HD    TCGA-IN-7806    TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IN-A6RI    TCGA-IN-A6RJ    TCGA-IN-A6RL    TCGA-IN-A6RN    TCGA-IN-A6RO 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IN-A6RR    TCGA-IN-A6RS    TCGA-IN-A7NR    TCGA-IN-A7NT    TCGA-IN-A7NU 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IN-AB1V    TCGA-IN-AB1X    TCGA-IP-7968    TCGA-KB-A6F7    TCGA-KB-A93G 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-KB-A93J    TCGA-MX-A5UG    TCGA-MX-A5UJ    TCGA-MX-A663    TCGA-MX-A666 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-R5-A7O7    TCGA-R5-A7ZE    TCGA-R5-A7ZF    TCGA-R5-A7ZI    TCGA-R5-A7ZR 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-R5-A805    TCGA-RD-A7BS    TCGA-RD-A7BT    TCGA-RD-A7BW    TCGA-RD-A7C1 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-RD-A8MV    TCGA-RD-A8MW    TCGA-RD-A8N0    TCGA-RD-A8N1    TCGA-RD-A8N2 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-RD-A8N4    TCGA-RD-A8N5    TCGA-RD-A8N6    TCGA-RD-A8N9    TCGA-SW-A7EA 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-SW-A7EB    TCGA-VQ-A8DT    TCGA-VQ-A8DU    TCGA-VQ-A8DV    TCGA-VQ-A8DZ 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-A8E2    TCGA-VQ-A8E7    TCGA-VQ-A8P2    TCGA-VQ-A8P3    TCGA-VQ-A8PE 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-A8PK    TCGA-VQ-A8PM    TCGA-VQ-A8PQ    TCGA-VQ-A91Q    TCGA-VQ-A91U 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-A91V    TCGA-VQ-A92D    TCGA-VQ-A94T    TCGA-VQ-AA64    TCGA-VQ-AA68 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-AA69    TCGA-VQ-AA6A    TCGA-VQ-AA6B    TCGA-VQ-AA6F    TCGA-VQ-AA6G 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-AA6I    TCGA-VQ-AA6J    TCGA-VQ-AA6K    TCGA-ZA-A8F6 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UTY MUTATED        0      1      1      1      0      0
  UTY WILD-TYPE     52     63     71    103     40     59
D851V7, multiclass
        clus
vv       UTY MUTATED UTY WILD-TYPE
  CLUS_1           0            52
  CLUS_2           1            63
  CLUS_3           1            71
  CLUS_4           1           103
  CLUS_5           0            40
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UTY MUTATED        3      0      0
  UTY WILD-TYPE    214     75     99
D851V8, multiclass
        clus
vv       UTY MUTATED UTY WILD-TYPE
  CLUS_1           3           214
  CLUS_2           0            75
  CLUS_3           0            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  UTY MUTATED        0      1      1
  UTY WILD-TYPE    121    107     71
D851V9, multiclass
[1] "Remove cluster labels:" "UTY MUTATED"           
clus
  UTY MUTATED UTY WILD-TYPE 
            2           299 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-B7-A5TI    TCGA-B7-A5TJ    TCGA-B7-A5TK 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-B7-A5TN    TCGA-BR-6452    TCGA-BR-6453    TCGA-BR-6454    TCGA-BR-6455 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563    TCGA-BR-6564 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706    TCGA-BR-6707 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802    TCGA-BR-6803 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197    TCGA-BR-7703    TCGA-BR-7704 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-7707    TCGA-BR-7715    TCGA-BR-7717    TCGA-BR-7723    TCGA-BR-7901 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-7957    TCGA-BR-7958    TCGA-BR-7959    TCGA-BR-8058    TCGA-BR-8059 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8060    TCGA-BR-8077    TCGA-BR-8078    TCGA-BR-8080    TCGA-BR-8284 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8286    TCGA-BR-8289    TCGA-BR-8291    TCGA-BR-8295    TCGA-BR-8297 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8361    TCGA-BR-8363    TCGA-BR-8364    TCGA-BR-8365    TCGA-BR-8368 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8369    TCGA-BR-8370    TCGA-BR-8371    TCGA-BR-8372    TCGA-BR-8373 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8380    TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384    TCGA-BR-8483 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8487    TCGA-BR-8588    TCGA-BR-8590 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8591    TCGA-BR-8592    TCGA-BR-8676    TCGA-BR-8677    TCGA-BR-8678 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8687 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8690    TCGA-BR-A44T    TCGA-BR-A452    TCGA-BR-A453    TCGA-BR-A4CQ 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4CR    TCGA-BR-A4CS    TCGA-BR-A4IU    TCGA-BR-A4IV    TCGA-BR-A4IY 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4IZ    TCGA-BR-A4J1    TCGA-BR-A4J5    TCGA-BR-A4J6    TCGA-BR-A4J7 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4J8    TCGA-BR-A4PD    TCGA-BR-A4QI    TCGA-BR-A4QL    TCGA-BR-A4QM 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-5803    TCGA-CD-5804    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-8526    TCGA-CD-8527    TCGA-CD-8529    TCGA-CD-8530    TCGA-CD-8531 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-8532    TCGA-CD-8533    TCGA-CD-8534    TCGA-CD-8535    TCGA-CD-8536 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-A486    TCGA-CD-A487    TCGA-CD-A489    TCGA-CD-A48C    TCGA-CD-A4MG 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-A4MH    TCGA-CD-A4MI    TCGA-CG-4437    TCGA-CG-4441    TCGA-CG-4449 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719    TCGA-CG-5720 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723    TCGA-CG-5724    TCGA-CG-5725 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5730    TCGA-CG-5732 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-5579 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8574    TCGA-D7-8575    TCGA-D7-8576 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-8578    TCGA-D7-8579    TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A4YY    TCGA-D7-A4Z0    TCGA-D7-A6ET    TCGA-D7-A6EV    TCGA-D7-A6EX 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A6EY    TCGA-D7-A6EZ    TCGA-D7-A6F0    TCGA-D7-A6F2    TCGA-D7-A747 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A748    TCGA-D7-A74A    TCGA-D7-A74B    TCGA-EQ-5647    TCGA-EQ-8122 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875    TCGA-F1-A448    TCGA-FP-7735 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-FP-7829    TCGA-FP-7998    TCGA-FP-8099    TCGA-FP-8209    TCGA-FP-8210 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-FP-8211    TCGA-FP-8631    TCGA-FP-A4BE    TCGA-FP-A9TM    TCGA-HF-7131 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HF-7132    TCGA-HF-7134    TCGA-HF-7136    TCGA-HU-8238    TCGA-HU-8243 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-8602    TCGA-HU-8604    TCGA-HU-8608    TCGA-HU-A4G3    TCGA-HU-A4G8 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4GC    TCGA-HU-A4GD    TCGA-HU-A4GF    TCGA-HU-A4GH    TCGA-HU-A4GJ 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4GN    TCGA-HU-A4GQ    TCGA-HU-A4GT    TCGA-HU-A4GX    TCGA-HU-A4GY 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4H2    TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-HU-A4H8 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4HB    TCGA-IN-7806    TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IN-A6RI    TCGA-IN-A6RJ    TCGA-IN-A6RL    TCGA-IN-A6RN    TCGA-IN-A6RP 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IN-A7NR    TCGA-IN-A7NT    TCGA-IN-A7NU    TCGA-IN-AB1V    TCGA-IN-AB1X 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IP-7968    TCGA-KB-A6F5    TCGA-KB-A6F7    TCGA-KB-A93J    TCGA-MX-A5UG 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-MX-A5UJ    TCGA-MX-A663    TCGA-MX-A666    TCGA-R5-A7O7    TCGA-R5-A7ZE 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-R5-A7ZF    TCGA-R5-A7ZI    TCGA-R5-A7ZR    TCGA-R5-A804    TCGA-R5-A805 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-RD-A7BS    TCGA-RD-A7BW    TCGA-RD-A7C1    TCGA-RD-A8MV    TCGA-RD-A8MW 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-RD-A8N0    TCGA-RD-A8N1    TCGA-RD-A8N5    TCGA-RD-A8N6    TCGA-RD-A8N9 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-SW-A7EA    TCGA-SW-A7EB    TCGA-VQ-A8DL    TCGA-VQ-A8DU    TCGA-VQ-A8DV 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-A8E2    TCGA-VQ-A8E7    TCGA-VQ-A8P2    TCGA-VQ-A8P3    TCGA-VQ-A8PE 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-A8PK    TCGA-VQ-A8PM    TCGA-VQ-A8PQ    TCGA-VQ-A91Q    TCGA-VQ-A91U 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-A91V    TCGA-VQ-A92D    TCGA-VQ-A94T    TCGA-VQ-AA64    TCGA-VQ-AA68 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-AA69    TCGA-VQ-AA6A    TCGA-VQ-AA6B    TCGA-VQ-AA6F    TCGA-VQ-AA6G 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-AA6I    TCGA-VQ-AA6J    TCGA-VQ-AA6K    TCGA-ZA-A8F6 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UTY MUTATED        1      0      0      0      1
  UTY WILD-TYPE     87     66     45     55     46
D851V10, multiclass
[1] "Remove cluster labels:" "UTY MUTATED"           
clus
  UTY MUTATED UTY WILD-TYPE 
            2           299 
   TCGA-B7-5816    TCGA-B7-5818    TCGA-B7-A5TI    TCGA-B7-A5TJ    TCGA-B7-A5TK 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-B7-A5TN    TCGA-BR-6452    TCGA-BR-6453    TCGA-BR-6454    TCGA-BR-6455 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6456    TCGA-BR-6457    TCGA-BR-6458    TCGA-BR-6563    TCGA-BR-6564 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6565    TCGA-BR-6566    TCGA-BR-6705    TCGA-BR-6706    TCGA-BR-6707 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6709    TCGA-BR-6710    TCGA-BR-6801    TCGA-BR-6802    TCGA-BR-6803 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-6852    TCGA-BR-7196    TCGA-BR-7197    TCGA-BR-7703    TCGA-BR-7704 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-7707    TCGA-BR-7715    TCGA-BR-7717    TCGA-BR-7723    TCGA-BR-7901 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-7957    TCGA-BR-7958    TCGA-BR-7959    TCGA-BR-8058    TCGA-BR-8059 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8060    TCGA-BR-8077    TCGA-BR-8078    TCGA-BR-8080    TCGA-BR-8284 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8286    TCGA-BR-8289    TCGA-BR-8291    TCGA-BR-8295    TCGA-BR-8297 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8361    TCGA-BR-8363    TCGA-BR-8364    TCGA-BR-8365    TCGA-BR-8368 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8369    TCGA-BR-8370    TCGA-BR-8371    TCGA-BR-8372    TCGA-BR-8373 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8380    TCGA-BR-8381    TCGA-BR-8382    TCGA-BR-8384    TCGA-BR-8483 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8485    TCGA-BR-8486    TCGA-BR-8487    TCGA-BR-8588    TCGA-BR-8590 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8591    TCGA-BR-8592    TCGA-BR-8676    TCGA-BR-8677    TCGA-BR-8678 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8679    TCGA-BR-8680    TCGA-BR-8682    TCGA-BR-8683    TCGA-BR-8687 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-8690    TCGA-BR-A44T    TCGA-BR-A452    TCGA-BR-A453    TCGA-BR-A4CQ 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4CR    TCGA-BR-A4CS    TCGA-BR-A4IU    TCGA-BR-A4IV    TCGA-BR-A4IY 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4IZ    TCGA-BR-A4J1    TCGA-BR-A4J5    TCGA-BR-A4J6    TCGA-BR-A4J7 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-BR-A4J8    TCGA-BR-A4PD    TCGA-BR-A4QI    TCGA-BR-A4QL    TCGA-BR-A4QM 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-5798    TCGA-CD-5799    TCGA-CD-5800    TCGA-CD-5801    TCGA-CD-5802 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-5803    TCGA-CD-5804    TCGA-CD-5813    TCGA-CD-8524    TCGA-CD-8525 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-8526    TCGA-CD-8527    TCGA-CD-8529    TCGA-CD-8530    TCGA-CD-8531 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-8532    TCGA-CD-8533    TCGA-CD-8534    TCGA-CD-8535    TCGA-CD-8536 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-A486    TCGA-CD-A487    TCGA-CD-A489    TCGA-CD-A48C    TCGA-CD-A4MG 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CD-A4MH    TCGA-CD-A4MI    TCGA-CG-4437    TCGA-CG-4441    TCGA-CG-4449 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-5716    TCGA-CG-5717    TCGA-CG-5718    TCGA-CG-5719    TCGA-CG-5720 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-5721    TCGA-CG-5722    TCGA-CG-5723    TCGA-CG-5724    TCGA-CG-5725 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-5726    TCGA-CG-5727    TCGA-CG-5728    TCGA-CG-5730    TCGA-CG-5732 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-CG-5733    TCGA-CG-5734    TCGA-D7-5577    TCGA-D7-5578    TCGA-D7-5579 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-6518    TCGA-D7-6519    TCGA-D7-6520    TCGA-D7-6521    TCGA-D7-6522 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-6524    TCGA-D7-6525    TCGA-D7-6526    TCGA-D7-6527    TCGA-D7-6528 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-6815    TCGA-D7-6817    TCGA-D7-6818    TCGA-D7-6820    TCGA-D7-6822 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-8570    TCGA-D7-8572    TCGA-D7-8574    TCGA-D7-8575    TCGA-D7-8576 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-8578    TCGA-D7-8579    TCGA-D7-A4YT    TCGA-D7-A4YU    TCGA-D7-A4YV 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A4YY    TCGA-D7-A4Z0    TCGA-D7-A6ET    TCGA-D7-A6EV    TCGA-D7-A6EX 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A6EY    TCGA-D7-A6EZ    TCGA-D7-A6F0    TCGA-D7-A6F2    TCGA-D7-A747 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-D7-A748    TCGA-D7-A74A    TCGA-D7-A74B    TCGA-EQ-5647    TCGA-EQ-8122 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-F1-6177    TCGA-F1-6874    TCGA-F1-6875    TCGA-F1-A448    TCGA-FP-7735 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-FP-7829    TCGA-FP-7998    TCGA-FP-8099    TCGA-FP-8209    TCGA-FP-8210 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-FP-8211    TCGA-FP-8631    TCGA-FP-A4BE    TCGA-FP-A9TM    TCGA-HF-7131 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HF-7132    TCGA-HF-7134    TCGA-HF-7136    TCGA-HU-8238    TCGA-HU-8243 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-8602    TCGA-HU-8604    TCGA-HU-8608    TCGA-HU-A4G3    TCGA-HU-A4G8 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4GC    TCGA-HU-A4GD    TCGA-HU-A4GF    TCGA-HU-A4GH    TCGA-HU-A4GJ 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4GN    TCGA-HU-A4GQ    TCGA-HU-A4GT    TCGA-HU-A4GX    TCGA-HU-A4GY 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4H2    TCGA-HU-A4H4    TCGA-HU-A4H5    TCGA-HU-A4H6    TCGA-HU-A4H8 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-HU-A4HB    TCGA-IN-7806    TCGA-IN-7808    TCGA-IN-8462    TCGA-IN-8663 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IN-A6RI    TCGA-IN-A6RJ    TCGA-IN-A6RL    TCGA-IN-A6RN    TCGA-IN-A6RP 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IN-A7NR    TCGA-IN-A7NT    TCGA-IN-A7NU    TCGA-IN-AB1V    TCGA-IN-AB1X 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-IP-7968    TCGA-KB-A6F5    TCGA-KB-A6F7    TCGA-KB-A93J    TCGA-MX-A5UG 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-MX-A5UJ    TCGA-MX-A663    TCGA-MX-A666    TCGA-R5-A7O7    TCGA-R5-A7ZE 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-R5-A7ZF    TCGA-R5-A7ZI    TCGA-R5-A7ZR    TCGA-R5-A804    TCGA-R5-A805 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-RD-A7BS    TCGA-RD-A7BW    TCGA-RD-A7C1    TCGA-RD-A8MV    TCGA-RD-A8MW 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-RD-A8N0    TCGA-RD-A8N1    TCGA-RD-A8N5    TCGA-RD-A8N6    TCGA-RD-A8N9 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-SW-A7EA    TCGA-SW-A7EB    TCGA-VQ-A8DL    TCGA-VQ-A8DU    TCGA-VQ-A8DV 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-A8E2    TCGA-VQ-A8E7    TCGA-VQ-A8P2    TCGA-VQ-A8P3    TCGA-VQ-A8PE 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-A8PK    TCGA-VQ-A8PM    TCGA-VQ-A8PQ    TCGA-VQ-A91Q    TCGA-VQ-A91U 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-A91V    TCGA-VQ-A92D    TCGA-VQ-A94T    TCGA-VQ-AA64    TCGA-VQ-AA68 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-AA69    TCGA-VQ-AA6A    TCGA-VQ-AA6B    TCGA-VQ-AA6F    TCGA-VQ-AA6G 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 
   TCGA-VQ-AA6I    TCGA-VQ-AA6J    TCGA-VQ-AA6K    TCGA-ZA-A8F6 
"UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" "UTY WILD-TYPE" 

Clustering(852) Variable = CCT6A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT6A MUTATED        0      7      1      0
  CCT6A WILD-TYPE    204    130     46      3
D852V1, multiclass
        clus
vv       CCT6A MUTATED CCT6A WILD-TYPE
  CLUS_1             0             204
  CLUS_2             7             130
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCT6A MUTATED        0      6      1      0      0
  CCT6A WILD-TYPE     39     90     43     88     80
D852V2, multiclass
        clus
vv       CCT6A MUTATED CCT6A WILD-TYPE
  CLUS_1             0              39
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCT6A MUTATED        0      2      2      1      1
  CCT6A WILD-TYPE     26     77     71     81     57
D852V3, multiclass
        clus
vv       CCT6A MUTATED CCT6A WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT6A MUTATED        0      4      1      1
  CCT6A WILD-TYPE    127     47     70     68
D852V4, multiclass
        clus
vv       CCT6A MUTATED CCT6A WILD-TYPE
  CLUS_1             0             127
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCT6A MUTATED        0      1      5      0      0
  CCT6A WILD-TYPE     84     84     80     69     47
D852V5, multiclass
        clus
vv       CCT6A MUTATED CCT6A WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCT6A MUTATED        1      2      0      3
  CCT6A WILD-TYPE     94     72    121     77
D852V6, multiclass
        clus
vv       CCT6A MUTATED CCT6A WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCT6A MUTATED        1      2      2      2      1      0
  CCT6A WILD-TYPE     51     62     70    102     39     59
D852V7, multiclass
        clus
vv       CCT6A MUTATED CCT6A WILD-TYPE
  CLUS_1             1              51
  CLUS_2             2              62
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCT6A MUTATED        5      3      0
  CCT6A WILD-TYPE    212     72     99
D852V8, multiclass
        clus
vv       CCT6A MUTATED CCT6A WILD-TYPE
  CLUS_1             5             212
  CLUS_2             3              72
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CCT6A MUTATED        2      1      4
  CCT6A WILD-TYPE    119    107     68
D852V9, multiclass
        clus
vv       CCT6A MUTATED CCT6A WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCT6A MUTATED        2      2      1      0      2
  CCT6A WILD-TYPE     86     64     44     55     45
D852V10, multiclass
        clus
vv       CCT6A MUTATED CCT6A WILD-TYPE
  CLUS_1             2              86
  CLUS_2             2              64
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(853) Variable = DGAT1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGAT1 MUTATED        0      8      1      0
  DGAT1 WILD-TYPE    204    129     46      3
D853V1, multiclass
        clus
vv       DGAT1 MUTATED DGAT1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGAT1 MUTATED        0      6      1      1      1
  DGAT1 WILD-TYPE     39     90     43     87     79
D853V2, multiclass
        clus
vv       DGAT1 MUTATED DGAT1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGAT1 MUTATED        0      3      1      0      0
  DGAT1 WILD-TYPE     26     76     72     82     58
D853V3, multiclass
        clus
vv       DGAT1 MUTATED DGAT1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGAT1 MUTATED        1      1      2      0
  DGAT1 WILD-TYPE    126     50     69     69
D853V4, multiclass
        clus
vv       DGAT1 MUTATED DGAT1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             1              50
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGAT1 MUTATED        1      1      2      3      2
  DGAT1 WILD-TYPE     83     84     83     66     45
D853V5, multiclass
        clus
vv       DGAT1 MUTATED DGAT1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             2              83
  CLUS_4             3              66
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGAT1 MUTATED        5      0      0      4
  DGAT1 WILD-TYPE     90     74    121     76
D853V6, multiclass
        clus
vv       DGAT1 MUTATED DGAT1 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DGAT1 MUTATED        4      2      1      1      1      0
  DGAT1 WILD-TYPE     48     62     71    103     39     59
D853V7, multiclass
        clus
vv       DGAT1 MUTATED DGAT1 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DGAT1 MUTATED        7      0      2
  DGAT1 WILD-TYPE    210     75     97
D853V8, multiclass
        clus
vv       DGAT1 MUTATED DGAT1 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DGAT1 MUTATED        5      2      1
  DGAT1 WILD-TYPE    116    106     71
D853V9, multiclass
        clus
vv       DGAT1 MUTATED DGAT1 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             2             106
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGAT1 MUTATED        3      0      1      0      4
  DGAT1 WILD-TYPE     85     66     44     55     43
D853V10, multiclass
        clus
vv       DGAT1 MUTATED DGAT1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(854) Variable = VWA1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWA1 MUTATED        0      6      1      0
  VWA1 WILD-TYPE    204    131     46      3
D854V1, multiclass
        clus
vv       VWA1 MUTATED VWA1 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            6            131
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VWA1 MUTATED        0      4      2      0      0
  VWA1 WILD-TYPE     39     92     42     88     80
D854V2, multiclass
        clus
vv       VWA1 MUTATED VWA1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VWA1 MUTATED        0      1      2      0      2
  VWA1 WILD-TYPE     26     78     71     82     56
D854V3, multiclass
        clus
vv       VWA1 MUTATED VWA1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWA1 MUTATED        2      3      0      0
  VWA1 WILD-TYPE    125     48     71     69
D854V4, multiclass
        clus
vv       VWA1 MUTATED VWA1 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            3             48
  CLUS_3            0             71
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VWA1 MUTATED        0      1      5      0      1
  VWA1 WILD-TYPE     84     84     80     69     46
D854V5, multiclass
        clus
vv       VWA1 MUTATED VWA1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            5             80
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VWA1 MUTATED        1      0      1      5
  VWA1 WILD-TYPE     94     74    120     75
D854V6, multiclass
        clus
vv       VWA1 MUTATED VWA1 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            0             74
  CLUS_3            1            120
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VWA1 MUTATED        2      4      1      0      0      0
  VWA1 WILD-TYPE     50     60     71    104     40     59
D854V7, multiclass
        clus
vv       VWA1 MUTATED VWA1 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            4             60
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VWA1 MUTATED        7      0      0
  VWA1 WILD-TYPE    210     75     99
D854V8, multiclass
        clus
vv       VWA1 MUTATED VWA1 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VWA1 MUTATED        3      0      3
  VWA1 WILD-TYPE    118    108     69
D854V9, multiclass
        clus
vv       VWA1 MUTATED VWA1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VWA1 MUTATED        1      0      2      0      3
  VWA1 WILD-TYPE     87     66     43     55     44
D854V10, multiclass
        clus
vv       VWA1 MUTATED VWA1 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(855) Variable = ABCA5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA5 MUTATED        5     15      1      0
  ABCA5 WILD-TYPE    199    122     46      3
D855V1, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             5             199
  CLUS_2            15             122
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA5 MUTATED        2     12      0      1      2
  ABCA5 WILD-TYPE     37     84     44     87     78
D855V2, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            12              84
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA5 MUTATED        3      5      6      2      3
  ABCA5 WILD-TYPE     23     74     67     80     55
D855V3, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             5              74
  CLUS_3             6              67
  CLUS_4             2              80
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA5 MUTATED        7     11      0      1
  ABCA5 WILD-TYPE    120     40     71     68
D855V4, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             7             120
  CLUS_2            11              40
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA5 MUTATED        1      2      9      3      4
  ABCA5 WILD-TYPE     83     83     76     66     43
D855V5, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             9              76
  CLUS_4             3              66
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA5 MUTATED        5      2      2     10
  ABCA5 WILD-TYPE     90     72    119     70
D855V6, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4            10              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCA5 MUTATED        9      5      3      2      2      0
  ABCA5 WILD-TYPE     43     59     69    102     38     59
D855V7, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             9              43
  CLUS_2             5              59
  CLUS_3             3              69
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA5 MUTATED       18      1      2
  ABCA5 WILD-TYPE    199     74     97
D855V8, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1            18             199
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA5 MUTATED        9      2      2
  ABCA5 WILD-TYPE    112    106     70
D855V9, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             9             112
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA5 MUTATED        4      2      1      1      5
  ABCA5 WILD-TYPE     84     64     44     54     42
D855V10, multiclass
        clus
vv       ABCA5 MUTATED ABCA5 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             2              64
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(856) Variable = LONRF1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LONRF1 MUTATED        0      5      0      0
  LONRF1 WILD-TYPE    204    132     47      3
D856V1, multiclass
        clus
vv       LONRF1 MUTATED LONRF1 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LONRF1 MUTATED        0      5      1      0      0
  LONRF1 WILD-TYPE     39     91     43     88     80
D856V2, multiclass
        clus
vv       LONRF1 MUTATED LONRF1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LONRF1 MUTATED        0      2      2      0      1
  LONRF1 WILD-TYPE     26     77     71     82     57
D856V3, multiclass
        clus
vv       LONRF1 MUTATED LONRF1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LONRF1 MUTATED        1      2      2      0
  LONRF1 WILD-TYPE    126     49     69     69
D856V4, multiclass
        clus
vv       LONRF1 MUTATED LONRF1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LONRF1 MUTATED        0      0      4      0      2
  LONRF1 WILD-TYPE     84     85     81     69     45
D856V5, multiclass
        clus
vv       LONRF1 MUTATED LONRF1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              4               81
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LONRF1 MUTATED        1      0      0      5
  LONRF1 WILD-TYPE     94     74    121     75
D856V6, multiclass
        clus
vv       LONRF1 MUTATED LONRF1 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              0               74
  CLUS_3              0              121
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LONRF1 MUTATED        4      2      0      0      0      0
  LONRF1 WILD-TYPE     48     62     72    104     40     59
D856V7, multiclass
        clus
vv       LONRF1 MUTATED LONRF1 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LONRF1 MUTATED        6      0      0
  LONRF1 WILD-TYPE    211     75     99
D856V8, multiclass
        clus
vv       LONRF1 MUTATED LONRF1 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LONRF1 MUTATED        3      1      2
  LONRF1 WILD-TYPE    118    107     70
D856V9, multiclass
        clus
vv       LONRF1 MUTATED LONRF1 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LONRF1 MUTATED        1      0      2      0      3
  LONRF1 WILD-TYPE     87     66     43     55     44
D856V10, multiclass
        clus
vv       LONRF1 MUTATED LONRF1 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(857) Variable = PHF10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF10 MUTATED        0      4      0      0
  PHF10 WILD-TYPE    204    133     47      3
D857V1, multiclass
        clus
vv       PHF10 MUTATED PHF10 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             4             133
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF10 MUTATED        0      1      1      0      1
  PHF10 WILD-TYPE     39     95     43     88     79
D857V2, multiclass
        clus
vv       PHF10 MUTATED PHF10 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             1              95
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF10 MUTATED        0      1      2      0      0
  PHF10 WILD-TYPE     26     78     71     82     58
D857V3, multiclass
        clus
vv       PHF10 MUTATED PHF10 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF10 MUTATED        0      3      0      0
  PHF10 WILD-TYPE    127     48     71     69
D857V4, multiclass
        clus
vv       PHF10 MUTATED PHF10 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             3              48
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF10 MUTATED        0      0      2      1      1
  PHF10 WILD-TYPE     84     85     83     68     46
D857V5, multiclass
        clus
vv       PHF10 MUTATED PHF10 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             2              83
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHF10 MUTATED        2      0      1      1
  PHF10 WILD-TYPE     93     74    120     79
D857V6, multiclass
        clus
vv       PHF10 MUTATED PHF10 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHF10 MUTATED        0      1      2      1      0      0
  PHF10 WILD-TYPE     52     63     70    103     40     59
D857V7, multiclass
        clus
vv       PHF10 MUTATED PHF10 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             1              63
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF10 MUTATED        4      0      0
  PHF10 WILD-TYPE    213     75     99
D857V8, multiclass
        clus
vv       PHF10 MUTATED PHF10 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHF10 MUTATED        2      0      0
  PHF10 WILD-TYPE    119    108     72
D857V9, multiclass
[1] "Remove cluster labels:" "PHF10 MUTATED"         
clus
  PHF10 MUTATED PHF10 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-FP-A9TM      TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-HU-A4GJ      TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-IN-A6RP      TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-KB-A6F7      TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-MX-A663      TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-R5-A7ZF      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHF10 MUTATED        1      0      0      0      1
  PHF10 WILD-TYPE     87     66     45     55     46
D857V10, multiclass
[1] "Remove cluster labels:" "PHF10 MUTATED"         
clus
  PHF10 MUTATED PHF10 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-FP-A9TM      TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-HU-A4GJ      TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-IN-A6RP      TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-KB-A6F7      TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-MX-A663      TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-R5-A7ZF      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"PHF10 WILD-TYPE" "PHF10 WILD-TYPE" "PHF10 WILD-TYPE" 

Clustering(858) Variable = CYP4B1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4B1 MUTATED        3      6      1      0
  CYP4B1 WILD-TYPE    201    131     46      3
D858V1, multiclass
        clus
vv       CYP4B1 MUTATED CYP4B1 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              6              131
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP4B1 MUTATED        1      6      0      1      1
  CYP4B1 WILD-TYPE     38     90     44     87     79
D858V2, multiclass
        clus
vv       CYP4B1 MUTATED CYP4B1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               90
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP4B1 MUTATED        0      2      2      3      1
  CYP4B1 WILD-TYPE     26     77     71     79     57
D858V3, multiclass
        clus
vv       CYP4B1 MUTATED CYP4B1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              2               71
  CLUS_4              3               79
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4B1 MUTATED        0      3      1      4
  CYP4B1 WILD-TYPE    127     48     70     65
D858V4, multiclass
        clus
vv       CYP4B1 MUTATED CYP4B1 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              3               48
  CLUS_3              1               70
  CLUS_4              4               65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP4B1 MUTATED        2      2      4      1      1
  CYP4B1 WILD-TYPE     82     83     81     68     46
D858V5, multiclass
        clus
vv       CYP4B1 MUTATED CYP4B1 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              2               83
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYP4B1 MUTATED        2      3      1      4
  CYP4B1 WILD-TYPE     93     71    120     76
D858V6, multiclass
        clus
vv       CYP4B1 MUTATED CYP4B1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              3               71
  CLUS_3              1              120
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CYP4B1 MUTATED        4      1      2      1      2      0
  CYP4B1 WILD-TYPE     48     63     70    103     38     59
D858V7, multiclass
        clus
vv       CYP4B1 MUTATED CYP4B1 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              1               63
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP4B1 MUTATED        7      0      3
  CYP4B1 WILD-TYPE    210     75     96
D858V8, multiclass
        clus
vv       CYP4B1 MUTATED CYP4B1 WILD-TYPE
  CLUS_1              7              210
  CLUS_2              0               75
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CYP4B1 MUTATED        4      1      1
  CYP4B1 WILD-TYPE    117    107     71
D858V9, multiclass
        clus
vv       CYP4B1 MUTATED CYP4B1 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              1              107
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYP4B1 MUTATED        4      0      0      1      1
  CYP4B1 WILD-TYPE     84     66     45     54     46
D858V10, multiclass
        clus
vv       CYP4B1 MUTATED CYP4B1 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              0               66
  CLUS_3              0               45
  CLUS_4              1               54
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(859) Variable = EXO1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXO1 MUTATED        3     13      1      0
  EXO1 WILD-TYPE    201    124     46      3
D859V1, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            3            201
  CLUS_2           13            124
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXO1 MUTATED        1     10      3      0      0
  EXO1 WILD-TYPE     38     86     41     88     80
D859V2, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2           10             86
  CLUS_3            3             41
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXO1 MUTATED        0      8      4      1      2
  EXO1 WILD-TYPE     26     71     69     81     56
D859V3, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            8             71
  CLUS_3            4             69
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXO1 MUTATED        1     10      3      1
  EXO1 WILD-TYPE    126     41     68     68
D859V4, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            1            126
  CLUS_2           10             41
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXO1 MUTATED        0      3      8      1      3
  EXO1 WILD-TYPE     84     82     77     68     44
D859V5, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            8             77
  CLUS_4            1             68
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXO1 MUTATED        4      2      1      8
  EXO1 WILD-TYPE     91     72    120     72
D859V6, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            2             72
  CLUS_3            1            120
  CLUS_4            8             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EXO1 MUTATED        2      7      5      2      1      0
  EXO1 WILD-TYPE     50     57     67    102     39     59
D859V7, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            7             57
  CLUS_3            5             67
  CLUS_4            2            102
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EXO1 MUTATED       15      2      0
  EXO1 WILD-TYPE    202     73     99
D859V8, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1           15            202
  CLUS_2            2             73
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EXO1 MUTATED        4      2      6
  EXO1 WILD-TYPE    117    106     66
D859V9, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            2            106
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXO1 MUTATED        2      2      4      0      4
  EXO1 WILD-TYPE     86     64     41     55     43
D859V10, multiclass
        clus
vv       EXO1 MUTATED EXO1 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            2             64
  CLUS_3            4             41
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(860) Variable = THYN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THYN1 MUTATED        3      4      1      0
  THYN1 WILD-TYPE    201    133     46      3
D860V1, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             4             133
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THYN1 MUTATED        2      4      0      0      0
  THYN1 WILD-TYPE     37     92     44     88     80
D860V2, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THYN1 MUTATED        2      2      1      0      2
  THYN1 WILD-TYPE     24     77     72     82     56
D860V3, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              77
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THYN1 MUTATED        5      1      1      0
  THYN1 WILD-TYPE    122     50     70     69
D860V4, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             1              50
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THYN1 MUTATED        2      0      4      1      1
  THYN1 WILD-TYPE     82     85     81     68     46
D860V5, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             0              85
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THYN1 MUTATED        3      0      2      3
  THYN1 WILD-TYPE     92     74    119     77
D860V6, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             0              74
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THYN1 MUTATED        1      3      1      1      0      2
  THYN1 WILD-TYPE     51     61     71    103     40     57
D860V7, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THYN1 MUTATED        6      0      2
  THYN1 WILD-TYPE    211     75     97
D860V8, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THYN1 MUTATED        2      1      2
  THYN1 WILD-TYPE    119    107     70
D860V9, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THYN1 MUTATED        2      0      1      1      1
  THYN1 WILD-TYPE     86     66     44     54     46
D860V10, multiclass
        clus
vv       THYN1 MUTATED THYN1 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(861) Variable = FOXQ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        0      3      0      0
  FOXQ1 WILD-TYPE    204    134     47      3
D861V1, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             3             134
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXQ1 MUTATED        0      1      1      0      0
  FOXQ1 WILD-TYPE     39     95     43     88     80
D861V2, multiclass
[1] "Remove cluster labels:" "FOXQ1 MUTATED"         
clus
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              2             345 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7715      TCGA-BR-7716 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284      TCGA-BR-8285 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366      TCGA-BR-8367 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-5716      TCGA-CG-5717 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A6F0      TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A74A      TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7735      TCGA-FP-7829 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-A4BF      TCGA-FP-A8CX      TCGA-FP-A9TM      TCGA-HF-7131 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134      TCGA-HF-7136 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8238      TCGA-HU-8243 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-8244      TCGA-HU-8249      TCGA-HU-8602      TCGA-HU-8604 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4G6      TCGA-HU-A4G8      TCGA-HU-A4G9      TCGA-HU-A4GC 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-HU-A4HD 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-A6RO      TCGA-IN-A6RP      TCGA-IN-A6RR      TCGA-IN-A6RS 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-KB-A93G      TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-MX-A663      TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-R5-A7ZF      TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-R5-A805      TCGA-RD-A7BS      TCGA-RD-A7BT      TCGA-RD-A7BW 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-RD-A7C1      TCGA-RD-A8MV      TCGA-RD-A8MW      TCGA-RD-A8N0 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-RD-A8N1      TCGA-RD-A8N2      TCGA-RD-A8N4      TCGA-RD-A8N5 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU      TCGA-VQ-A8DV 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8DZ      TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8P3      TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8PQ      TCGA-VQ-A91Q      TCGA-VQ-A91U      TCGA-VQ-A91V 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A92D      TCGA-VQ-A94T      TCGA-VQ-AA64      TCGA-VQ-AA68 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6J      TCGA-VQ-AA6K 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-ZA-A8F6 
"FOXQ1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXQ1 MUTATED        0      0      0      0      1
  FOXQ1 WILD-TYPE     26     79     73     82     57
D861V3, multiclass
[1] "Remove cluster labels:" "FOXQ1 MUTATED"         
clus
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              1             317 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-4183      TCGA-BR-4184 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7704      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8080      TCGA-BR-8081 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4460      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A748      TCGA-EQ-8122 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7916      TCGA-FP-7998 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8602 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF      TCGA-HU-A4GQ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-8663      TCGA-IN-A6RI      TCGA-IN-A6RL      TCGA-IN-A6RN 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-A6RO      TCGA-IN-A6RR      TCGA-IN-A6RS      TCGA-IN-A7NR 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V      TCGA-IN-AB1X 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A93G      TCGA-MX-A5UG 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BT      TCGA-RD-A7BW      TCGA-RD-A7C1 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-RD-A8MV      TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-SW-A7EA      TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8DU      TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8P3      TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8PQ      TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6K 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-ZA-A8F6 
"FOXQ1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        1      0      0      0
  FOXQ1 WILD-TYPE    126     51     71     69
D861V4, multiclass
[1] "Remove cluster labels:" "FOXQ1 MUTATED"         
clus
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              1             317 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-4183      TCGA-BR-4184 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7704      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8080      TCGA-BR-8081 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4460      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A748      TCGA-EQ-8122 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7916      TCGA-FP-7998 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8602 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4GF      TCGA-HU-A4GQ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-8663      TCGA-IN-A6RI      TCGA-IN-A6RL      TCGA-IN-A6RN 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-A6RO      TCGA-IN-A6RR      TCGA-IN-A6RS      TCGA-IN-A7NR 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V      TCGA-IN-AB1X 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A93G      TCGA-MX-A5UG 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BT      TCGA-RD-A7BW      TCGA-RD-A7C1 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-RD-A8MV      TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-SW-A7EA      TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8DU      TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8P3      TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8PQ      TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6K 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-ZA-A8F6 
"FOXQ1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXQ1 MUTATED        0      0      2      1      0
  FOXQ1 WILD-TYPE     84     85     83     68     47
D861V5, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             2              83
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FOXQ1 MUTATED        1      0      0      2
  FOXQ1 WILD-TYPE     94     74    121     78
D861V6, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FOXQ1 MUTATED        0      2      1      0      0      0
  FOXQ1 WILD-TYPE     52     62     71    104     40     59
D861V7, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        2      0      1
  FOXQ1 WILD-TYPE    215     75     98
D861V8, multiclass
        clus
vv       FOXQ1 MUTATED FOXQ1 WILD-TYPE
  CLUS_1             2             215
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FOXQ1 MUTATED        2      0      0
  FOXQ1 WILD-TYPE    119    108     72
D861V9, multiclass
[1] "Remove cluster labels:" "FOXQ1 MUTATED"         
clus
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7715      TCGA-BR-7717 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8284 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CG-4437 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716      TCGA-CG-5717 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-FP-A9TM 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134      TCGA-HF-7136 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-IN-7806 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FOXQ1 MUTATED        2      0      0      0      0
  FOXQ1 WILD-TYPE     86     66     45     55     47
D861V10, multiclass
[1] "Remove cluster labels:" "FOXQ1 MUTATED"         
clus
  FOXQ1 MUTATED FOXQ1 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7715      TCGA-BR-7717 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8080      TCGA-BR-8284 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291      TCGA-BR-8295 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361      TCGA-BR-8363 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368      TCGA-BR-8369 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8687 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452      TCGA-BR-A453 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48C 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CG-4437 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716      TCGA-CG-5717 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-FP-A9TM 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134      TCGA-HF-7136 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-IN-7806 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" "FOXQ1 WILD-TYPE" 

Clustering(862) Variable = HIVEP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP1 MUTATED        6     16      2      0
  HIVEP1 WILD-TYPE    198    121     45      3
D862V1, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              6              198
  CLUS_2             16              121
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP1 MUTATED        3     13      4      1      1
  HIVEP1 WILD-TYPE     36     83     40     87     79
D862V2, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              3               36
  CLUS_2             13               83
  CLUS_3              4               40
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP1 MUTATED        2     10      3      1      5
  HIVEP1 WILD-TYPE     24     69     70     81     53
D862V3, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              2               24
  CLUS_2             10               69
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              5               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP1 MUTATED        6      7      7      1
  HIVEP1 WILD-TYPE    121     44     64     68
D862V4, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              6              121
  CLUS_2              7               44
  CLUS_3              7               64
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP1 MUTATED        1      2     12      5      3
  HIVEP1 WILD-TYPE     83     83     73     64     44
D862V5, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3             12               73
  CLUS_4              5               64
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP1 MUTATED        8      1      2     12
  HIVEP1 WILD-TYPE     87     73    119     68
D862V6, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              8               87
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4             12               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIVEP1 MUTATED        8      7      7      2      0      0
  HIVEP1 WILD-TYPE     44     57     65    102     40     59
D862V7, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              8               44
  CLUS_2              7               57
  CLUS_3              7               65
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP1 MUTATED       23      1      0
  HIVEP1 WILD-TYPE    194     74     99
D862V8, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1             23              194
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP1 MUTATED       10      2      7
  HIVEP1 WILD-TYPE    111    106     65
D862V9, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1             10              111
  CLUS_2              2              106
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP1 MUTATED        8      0      4      0      7
  HIVEP1 WILD-TYPE     80     66     41     55     40
D862V10, multiclass
        clus
vv       HIVEP1 MUTATED HIVEP1 WILD-TYPE
  CLUS_1              8               80
  CLUS_2              0               66
  CLUS_3              4               41
  CLUS_4              0               55
  CLUS_5              7               40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(863) Variable = ZNF687 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF687 MUTATED        0     11      0      0
  ZNF687 WILD-TYPE    204    126     47      3
D863V1, multiclass
        clus
vv       ZNF687 MUTATED ZNF687 WILD-TYPE
  CLUS_1              0              204
  CLUS_2             11              126
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF687 MUTATED        2      5      0      0      1
  ZNF687 WILD-TYPE     37     91     44     88     79
D863V2, multiclass
        clus
vv       ZNF687 MUTATED ZNF687 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              5               91
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF687 MUTATED        1      3      2      1      3
  ZNF687 WILD-TYPE     25     76     71     81     55
D863V3, multiclass
        clus
vv       ZNF687 MUTATED ZNF687 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF687 MUTATED        2      4      3      1
  ZNF687 WILD-TYPE    125     47     68     68
D863V4, multiclass
        clus
vv       ZNF687 MUTATED ZNF687 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              4               47
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF687 MUTATED        0      1      5      1      4
  ZNF687 WILD-TYPE     84     84     80     68     43
D863V5, multiclass
        clus
vv       ZNF687 MUTATED ZNF687 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              5               80
  CLUS_4              1               68
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF687 MUTATED        3      1      1      6
  ZNF687 WILD-TYPE     92     73    120     74
D863V6, multiclass
        clus
vv       ZNF687 MUTATED ZNF687 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF687 MUTATED        4      5      1      1      0      0
  ZNF687 WILD-TYPE     48     59     71    103     40     59
D863V7, multiclass
        clus
vv       ZNF687 MUTATED ZNF687 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              5               59
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF687 MUTATED       10      0      1
  ZNF687 WILD-TYPE    207     75     98
D863V8, multiclass
        clus
vv       ZNF687 MUTATED ZNF687 WILD-TYPE
  CLUS_1             10              207
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF687 MUTATED        4      1      3
  ZNF687 WILD-TYPE    117    107     69
D863V9, multiclass
        clus
vv       ZNF687 MUTATED ZNF687 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF687 MUTATED        3      0      1      0      4
  ZNF687 WILD-TYPE     85     66     44     55     43
D863V10, multiclass
        clus
vv       ZNF687 MUTATED ZNF687 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(864) Variable = PTPN23 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN23 MUTATED        1     17      2      0
  PTPN23 WILD-TYPE    203    120     45      3
D864V1, multiclass
        clus
vv       PTPN23 MUTATED PTPN23 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             17              120
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN23 MUTATED        0     11      4      0      2
  PTPN23 WILD-TYPE     39     85     40     88     78
D864V2, multiclass
        clus
vv       PTPN23 MUTATED PTPN23 WILD-TYPE
  CLUS_1              0               39
  CLUS_2             11               85
  CLUS_3              4               40
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN23 MUTATED        2      7      4      1      2
  PTPN23 WILD-TYPE     24     72     69     81     56
D864V3, multiclass
        clus
vv       PTPN23 MUTATED PTPN23 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              7               72
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN23 MUTATED        4      5      5      2
  PTPN23 WILD-TYPE    123     46     66     67
D864V4, multiclass
        clus
vv       PTPN23 MUTATED PTPN23 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              5               46
  CLUS_3              5               66
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN23 MUTATED        0      5     11      4      0
  PTPN23 WILD-TYPE     84     80     74     65     47
D864V5, multiclass
        clus
vv       PTPN23 MUTATED PTPN23 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              5               80
  CLUS_3             11               74
  CLUS_4              4               65
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN23 MUTATED        5      2      2     11
  PTPN23 WILD-TYPE     90     72    119     69
D864V6, multiclass
        clus
vv       PTPN23 MUTATED PTPN23 WILD-TYPE
  CLUS_1              5               90
  CLUS_2              2               72
  CLUS_3              2              119
  CLUS_4             11               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPN23 MUTATED        5      9      1      3      3      0
  PTPN23 WILD-TYPE     47     55     71    101     37     59
D864V7, multiclass
        clus
vv       PTPN23 MUTATED PTPN23 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              9               55
  CLUS_3              1               71
  CLUS_4              3              101
  CLUS_5              3               37
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN23 MUTATED       18      0      3
  PTPN23 WILD-TYPE    199     75     96
D864V8, multiclass
        clus
vv       PTPN23 MUTATED PTPN23 WILD-TYPE
  CLUS_1             18              199
  CLUS_2              0               75
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN23 MUTATED        8      3      4
  PTPN23 WILD-TYPE    113    105     68
D864V9, multiclass
        clus
vv       PTPN23 MUTATED PTPN23 WILD-TYPE
  CLUS_1              8              113
  CLUS_2              3              105
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN23 MUTATED        8      0      4      0      3
  PTPN23 WILD-TYPE     80     66     41     55     44
D864V10, multiclass
        clus
vv       PTPN23 MUTATED PTPN23 WILD-TYPE
  CLUS_1              8               80
  CLUS_2              0               66
  CLUS_3              4               41
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(865) Variable = ADAM7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM7 MUTATED        2     13      0      0
  ADAM7 WILD-TYPE    202    124     47      3
D865V1, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            13             124
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM7 MUTATED        0     11      1      0      1
  ADAM7 WILD-TYPE     39     85     43     88     79
D865V2, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             0              39
  CLUS_2            11              85
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM7 MUTATED        0      5      5      2      1
  ADAM7 WILD-TYPE     26     74     68     80     57
D865V3, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             5              74
  CLUS_3             5              68
  CLUS_4             2              80
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM7 MUTATED        1      8      3      1
  ADAM7 WILD-TYPE    126     43     68     68
D865V4, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             8              43
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM7 MUTATED        1      4      9      1      0
  ADAM7 WILD-TYPE     83     81     76     68     47
D865V5, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             4              81
  CLUS_3             9              76
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAM7 MUTATED        2      4      1      8
  ADAM7 WILD-TYPE     93     70    120     72
D865V6, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             4              70
  CLUS_3             1             120
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADAM7 MUTATED        4      5      3      4      0      0
  ADAM7 WILD-TYPE     48     59     69    100     40     59
D865V7, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             5              59
  CLUS_3             3              69
  CLUS_4             4             100
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADAM7 MUTATED       11      3      2
  ADAM7 WILD-TYPE    206     72     97
D865V8, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             3              72
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ADAM7 MUTATED        6      1      3
  ADAM7 WILD-TYPE    115    107     69
D865V9, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAM7 MUTATED        3      2      2      0      3
  ADAM7 WILD-TYPE     85     64     43     55     44
D865V10, multiclass
        clus
vv       ADAM7 MUTATED ADAM7 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             2              64
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(866) Variable = NOP2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOP2 MUTATED        1      6      1      0
  NOP2 WILD-TYPE    203    131     46      3
D866V1, multiclass
        clus
vv       NOP2 MUTATED NOP2 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            6            131
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOP2 MUTATED        1      7      0      0      0
  NOP2 WILD-TYPE     38     89     44     88     80
D866V2, multiclass
        clus
vv       NOP2 MUTATED NOP2 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            7             89
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOP2 MUTATED        1      0      3      1      1
  NOP2 WILD-TYPE     25     79     70     81     57
D866V3, multiclass
        clus
vv       NOP2 MUTATED NOP2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            0             79
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOP2 MUTATED        3      2      0      1
  NOP2 WILD-TYPE    124     49     71     68
D866V4, multiclass
        clus
vv       NOP2 MUTATED NOP2 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            2             49
  CLUS_3            0             71
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOP2 MUTATED        0      1      3      3      0
  NOP2 WILD-TYPE     84     84     82     66     47
D866V5, multiclass
        clus
vv       NOP2 MUTATED NOP2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            3             82
  CLUS_4            3             66
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NOP2 MUTATED        3      1      0      3
  NOP2 WILD-TYPE     92     73    121     77
D866V6, multiclass
        clus
vv       NOP2 MUTATED NOP2 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NOP2 MUTATED        5      0      0      2      1      0
  NOP2 WILD-TYPE     47     64     72    102     39     59
D866V7, multiclass
        clus
vv       NOP2 MUTATED NOP2 WILD-TYPE
  CLUS_1            5             47
  CLUS_2            0             64
  CLUS_3            0             72
  CLUS_4            2            102
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOP2 MUTATED        6      2      0
  NOP2 WILD-TYPE    211     73     99
D866V8, multiclass
        clus
vv       NOP2 MUTATED NOP2 WILD-TYPE
  CLUS_1            6            211
  CLUS_2            2             73
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NOP2 MUTATED        7      1      0
  NOP2 WILD-TYPE    114    107     72
D866V9, multiclass
        clus
vv       NOP2 MUTATED NOP2 WILD-TYPE
  CLUS_1            7            114
  CLUS_2            1            107
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NOP2 MUTATED        4      1      0      0      3
  NOP2 WILD-TYPE     84     65     45     55     44
D866V10, multiclass
        clus
vv       NOP2 MUTATED NOP2 WILD-TYPE
  CLUS_1            4             84
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(867) Variable = FAM26E MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM26E MUTATED        0      2      1      0
  FAM26E WILD-TYPE    204    135     46      3
D867V1, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              0              204
  CLUS_2              2              135
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM26E MUTATED        0      3      0      0      0
  FAM26E WILD-TYPE     39     93     44     88     80
D867V2, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM26E MUTATED        0      0      0      1      2
  FAM26E WILD-TYPE     26     79     73     81     56
D867V3, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               79
  CLUS_3              0               73
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM26E MUTATED        0      2      0      1
  FAM26E WILD-TYPE    127     49     71     68
D867V4, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              0              127
  CLUS_2              2               49
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM26E MUTATED        0      0      2      0      1
  FAM26E WILD-TYPE     84     85     83     69     46
D867V5, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              2               83
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM26E MUTATED        0      1      0      2
  FAM26E WILD-TYPE     95     73    121     78
D867V6, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              0               95
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM26E MUTATED        0      1      1      0      1      0
  FAM26E WILD-TYPE     52     63     71    104     39     59
D867V7, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              0               52
  CLUS_2              1               63
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM26E MUTATED        2      1      0
  FAM26E WILD-TYPE    215     74     99
D867V8, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              2              215
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM26E MUTATED        1      0      2
  FAM26E WILD-TYPE    120    108     70
D867V9, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              1              120
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM26E MUTATED        1      0      1      0      1
  FAM26E WILD-TYPE     87     66     44     55     46
D867V10, multiclass
        clus
vv       FAM26E MUTATED FAM26E WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(868) Variable = OTX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTX2 MUTATED        0      8      1      0
  OTX2 WILD-TYPE    204    129     46      3
D868V1, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            8            129
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTX2 MUTATED        0      5      0      0      1
  OTX2 WILD-TYPE     39     91     44     88     79
D868V2, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            5             91
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTX2 MUTATED        0      2      2      1      3
  OTX2 WILD-TYPE     26     77     71     81     55
D868V3, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTX2 MUTATED        0      5      2      1
  OTX2 WILD-TYPE    127     46     69     68
D868V4, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            5             46
  CLUS_3            2             69
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTX2 MUTATED        0      3      4      1      1
  OTX2 WILD-TYPE     84     82     81     68     46
D868V5, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            4             81
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OTX2 MUTATED        2      2      1      4
  OTX2 WILD-TYPE     93     72    120     76
D868V6, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            2             72
  CLUS_3            1            120
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OTX2 MUTATED        3      5      1      0      0      0
  OTX2 WILD-TYPE     49     59     71    104     40     59
D868V7, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            5             59
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OTX2 MUTATED        8      1      0
  OTX2 WILD-TYPE    209     74     99
D868V8, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            8            209
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  OTX2 MUTATED        3      0      3
  OTX2 WILD-TYPE    118    108     69
D868V9, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OTX2 MUTATED        0      0      2      0      4
  OTX2 WILD-TYPE     88     66     43     55     43
D868V10, multiclass
        clus
vv       OTX2 MUTATED OTX2 WILD-TYPE
  CLUS_1            0             88
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(869) Variable = TMEM116 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM116 MUTATED        1      2      0      0
  TMEM116 WILD-TYPE    203    135     47      3
D869V1, multiclass
        clus
vv       TMEM116 MUTATED TMEM116 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               2               135
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM116 MUTATED        0      1      0      1      0
  TMEM116 WILD-TYPE     39     95     44     87     80
D869V2, multiclass
[1] "Remove cluster labels:" "TMEM116 MUTATED"       
clus
  TMEM116 MUTATED TMEM116 WILD-TYPE 
                2               345 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-6452        TCGA-BR-6453 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7703        TCGA-BR-7704        TCGA-BR-7707        TCGA-BR-7715 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7716        TCGA-BR-7717        TCGA-BR-7722        TCGA-BR-7723 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8060 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8077        TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8081 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8284        TCGA-BR-8285        TCGA-BR-8286        TCGA-BR-8289 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8360 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8361        TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8366        TCGA-BR-8367        TCGA-BR-8368        TCGA-BR-8369 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8483        TCGA-BR-8484        TCGA-BR-8485        TCGA-BR-8486 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8589        TCGA-BR-8590 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676        TCGA-BR-8677 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680        TCGA-BR-8682 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687        TCGA-BR-8690 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A44T        TCGA-BR-A44U        TCGA-BR-A452        TCGA-BR-A453 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4J2        TCGA-BR-A4J4        TCGA-BR-A4J5        TCGA-BR-A4J6 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4PE 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4PF        TCGA-BR-A4QI        TCGA-BR-A4QM        TCGA-CD-5798 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-5803        TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-8525        TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8528 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-8533        TCGA-CD-8534        TCGA-CD-8535        TCGA-CD-8536 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489        TCGA-CD-A48A 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-A4MJ        TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-5716 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-8573        TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A4YV        TCGA-D7-A4YX        TCGA-D7-A4YY        TCGA-D7-A4Z0 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A6ET        TCGA-D7-A6EV        TCGA-D7-A6EX        TCGA-D7-A6EY 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A6EZ        TCGA-D7-A6F0        TCGA-D7-A6F2        TCGA-D7-A747 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A748        TCGA-D7-A74A        TCGA-D7-A74B        TCGA-EQ-5647 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-EQ-8122        TCGA-EQ-A4SO        TCGA-F1-6177        TCGA-F1-6874 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-F1-6875        TCGA-F1-A448        TCGA-F1-A72C        TCGA-FP-7735 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-FP-7829        TCGA-FP-7916        TCGA-FP-7998        TCGA-FP-8099 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211        TCGA-FP-8631 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-FP-A4BE        TCGA-FP-A4BF        TCGA-FP-A8CX        TCGA-FP-A9TM 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HF-7131        TCGA-HF-7132        TCGA-HF-7133        TCGA-HF-7134 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HF-7136        TCGA-HF-A5NB        TCGA-HJ-7597        TCGA-HU-8238 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-8243        TCGA-HU-8244        TCGA-HU-8249        TCGA-HU-8602 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-8604        TCGA-HU-8608        TCGA-HU-8610        TCGA-HU-A4G2 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4G3        TCGA-HU-A4G6        TCGA-HU-A4G8        TCGA-HU-A4G9 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4GC        TCGA-HU-A4GD        TCGA-HU-A4GF        TCGA-HU-A4GH 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4GJ        TCGA-HU-A4GN        TCGA-HU-A4GP        TCGA-HU-A4GQ 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4GT        TCGA-HU-A4GU        TCGA-HU-A4GX        TCGA-HU-A4GY 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4H0        TCGA-HU-A4H2        TCGA-HU-A4H3        TCGA-HU-A4H4 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8        TCGA-HU-A4HB 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4HD        TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-8663        TCGA-IN-A6RI        TCGA-IN-A6RJ        TCGA-IN-A6RL 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-A6RN        TCGA-IN-A6RO        TCGA-IN-A6RP        TCGA-IN-A6RR 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-A6RS        TCGA-IN-A7NR        TCGA-IN-A7NT        TCGA-IN-A7NU 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-AB1V        TCGA-IN-AB1X        TCGA-IP-7968        TCGA-KB-A6F5 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-KB-A6F7        TCGA-KB-A93G        TCGA-KB-A93J        TCGA-MX-A5UG 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-MX-A5UJ        TCGA-MX-A663        TCGA-MX-A666        TCGA-R5-A7O7 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-R5-A7ZE        TCGA-R5-A7ZF        TCGA-R5-A7ZI        TCGA-R5-A7ZR 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-R5-A804        TCGA-R5-A805        TCGA-RD-A7BS        TCGA-RD-A7BT 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-RD-A7BW        TCGA-RD-A7C1        TCGA-RD-A8MV        TCGA-RD-A8MW 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-RD-A8N0        TCGA-RD-A8N1        TCGA-RD-A8N2        TCGA-RD-A8N4 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-RD-A8N5        TCGA-RD-A8N6        TCGA-RD-A8N9        TCGA-SW-A7EA 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-SW-A7EB        TCGA-VQ-A8DL        TCGA-VQ-A8DT        TCGA-VQ-A8DU 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A8DV        TCGA-VQ-A8DZ        TCGA-VQ-A8E2        TCGA-VQ-A8E7 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A8P2        TCGA-VQ-A8P3        TCGA-VQ-A8PE        TCGA-VQ-A8PK 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A8PM        TCGA-VQ-A8PQ        TCGA-VQ-A91Q        TCGA-VQ-A91V 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A92D        TCGA-VQ-A94T        TCGA-VQ-AA64        TCGA-VQ-AA68 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-AA69        TCGA-VQ-AA6A        TCGA-VQ-AA6B        TCGA-VQ-AA6F 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-AA6G        TCGA-VQ-AA6I        TCGA-VQ-AA6J        TCGA-VQ-AA6K 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-ZA-A8F6 
"TMEM116 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM116 MUTATED        0      1      1      0      1
  TMEM116 WILD-TYPE     26     78     72     82     57
D869V3, multiclass
        clus
vv       TMEM116 MUTATED TMEM116 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                78
  CLUS_3               1                72
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM116 MUTATED        1      2      0      0
  TMEM116 WILD-TYPE    126     49     71     69
D869V4, multiclass
        clus
vv       TMEM116 MUTATED TMEM116 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               2                49
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM116 MUTATED        0      0      0      0      2
  TMEM116 WILD-TYPE     84     85     85     69     45
D869V5, multiclass
[1] "Remove cluster labels:" "TMEM116 MUTATED"       
clus
  TMEM116 MUTATED TMEM116 WILD-TYPE 
                2               368 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-4187        TCGA-BR-4191 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-4201        TCGA-BR-4253        TCGA-BR-4255        TCGA-BR-4256 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-4257        TCGA-BR-4267        TCGA-BR-4279        TCGA-BR-4280 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-4292        TCGA-BR-4294        TCGA-BR-4357        TCGA-BR-4361 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-4362        TCGA-BR-4363        TCGA-BR-4366        TCGA-BR-4368 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-4369        TCGA-BR-4370        TCGA-BR-4371        TCGA-BR-6452 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6453        TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6565        TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6707        TCGA-BR-6709        TCGA-BR-6801        TCGA-BR-6802 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7703        TCGA-BR-7704        TCGA-BR-7707        TCGA-BR-7715 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7716        TCGA-BR-7717        TCGA-BR-7722        TCGA-BR-7723 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8060 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8077        TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8081 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289        TCGA-BR-8291 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8361        TCGA-BR-8363 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8366        TCGA-BR-8367 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8371        TCGA-BR-8372 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8373        TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8484        TCGA-BR-8485 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8486        TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8589 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A44U        TCGA-BR-A452 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A453        TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4J2        TCGA-BR-A4J4        TCGA-BR-A4J5        TCGA-BR-A4J6 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4PE 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4PF        TCGA-BR-A4QI        TCGA-BR-A4QM        TCGA-CD-5798 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5803 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8528        TCGA-CD-8529 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8533 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-8534        TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-A487        TCGA-CD-A489        TCGA-CD-A48A        TCGA-CD-A48C 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI        TCGA-CD-A4MJ 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-4301        TCGA-CG-4304        TCGA-CG-4305        TCGA-CG-4306 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-4436        TCGA-CG-4437        TCGA-CG-4438        TCGA-CG-4440 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-4441        TCGA-CG-4442        TCGA-CG-4443        TCGA-CG-4444 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-4449        TCGA-CG-4460        TCGA-CG-4462        TCGA-CG-4465 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-4466        TCGA-CG-4469        TCGA-CG-4474        TCGA-CG-4475 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-4476        TCGA-CG-4477        TCGA-CG-5716        TCGA-CG-5717 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5726        TCGA-CG-5732        TCGA-CG-5734        TCGA-D7-5577 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-5578        TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8573        TCGA-D7-8574 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-8575        TCGA-D7-8576        TCGA-D7-8578        TCGA-D7-8579 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A4YT        TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YX 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-D7-A6EV        TCGA-D7-A6EX 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A6EY        TCGA-D7-A6EZ        TCGA-D7-A6F0        TCGA-D7-A6F2 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A747        TCGA-D7-A748        TCGA-D7-A74A        TCGA-EQ-8122 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-EQ-A4SO        TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-F1-A448        TCGA-F1-A72C        TCGA-FP-7735        TCGA-FP-7829 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-FP-7916        TCGA-FP-7998        TCGA-FP-8099        TCGA-FP-8209 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-FP-8210        TCGA-FP-8211        TCGA-FP-8631        TCGA-FP-A4BE 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-FP-A4BF        TCGA-FP-A8CX        TCGA-FP-A9TM        TCGA-HF-7131 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HF-7132        TCGA-HF-7133        TCGA-HF-7134        TCGA-HF-7136 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HF-A5NB        TCGA-HJ-7597        TCGA-HU-8238        TCGA-HU-8243 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-8244        TCGA-HU-8249        TCGA-HU-8602        TCGA-HU-8604 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-8608        TCGA-HU-8610        TCGA-HU-A4G2        TCGA-HU-A4G3 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4G6        TCGA-HU-A4G8        TCGA-HU-A4G9        TCGA-HU-A4GC 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4GD        TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GJ 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4GN        TCGA-HU-A4GP        TCGA-HU-A4GQ        TCGA-HU-A4GT 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4GU        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H0 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4H2        TCGA-HU-A4H3        TCGA-HU-A4H4        TCGA-HU-A4H5 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4H6        TCGA-HU-A4H8        TCGA-HU-A4HB        TCGA-HU-A4HD 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-A6RI        TCGA-IN-A6RJ        TCGA-IN-A6RL        TCGA-IN-A6RN 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-A6RO        TCGA-IN-A6RR        TCGA-IN-A6RS        TCGA-IN-A7NR 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-A7NT        TCGA-IN-A7NU        TCGA-IN-AB1V        TCGA-IN-AB1X 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IP-7968        TCGA-KB-A6F7        TCGA-KB-A93G        TCGA-KB-A93J 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-MX-A5UG        TCGA-MX-A5UJ        TCGA-MX-A663        TCGA-MX-A666 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-R5-A7O7        TCGA-R5-A7ZE        TCGA-R5-A7ZF        TCGA-R5-A7ZI 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-R5-A7ZR        TCGA-R5-A805        TCGA-RD-A7BS        TCGA-RD-A7BT 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-RD-A7BW        TCGA-RD-A7C1        TCGA-RD-A8MV        TCGA-RD-A8MW 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-RD-A8N0        TCGA-RD-A8N1        TCGA-RD-A8N2        TCGA-RD-A8N4 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-RD-A8N5        TCGA-RD-A8N6        TCGA-RD-A8N9        TCGA-SW-A7EA 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-SW-A7EB        TCGA-VQ-A8DT        TCGA-VQ-A8DU        TCGA-VQ-A8DV 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A8DZ        TCGA-VQ-A8E2        TCGA-VQ-A8E7        TCGA-VQ-A8P2 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A8P3        TCGA-VQ-A8PE        TCGA-VQ-A8PK        TCGA-VQ-A8PM 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A8PQ        TCGA-VQ-A91Q        TCGA-VQ-A91V        TCGA-VQ-A92D 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A94T        TCGA-VQ-AA64        TCGA-VQ-AA68        TCGA-VQ-AA69 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-AA6A        TCGA-VQ-AA6B        TCGA-VQ-AA6F        TCGA-VQ-AA6G 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-AA6I        TCGA-VQ-AA6J        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM116 MUTATED        0      0      0      2
  TMEM116 WILD-TYPE     95     74    121     78
D869V6, multiclass
[1] "Remove cluster labels:" "TMEM116 MUTATED"       
clus
  TMEM116 MUTATED TMEM116 WILD-TYPE 
                2               368 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-4187        TCGA-BR-4191 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-4201        TCGA-BR-4253        TCGA-BR-4255        TCGA-BR-4256 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-4257        TCGA-BR-4267        TCGA-BR-4279        TCGA-BR-4280 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-4292        TCGA-BR-4294        TCGA-BR-4357        TCGA-BR-4361 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-4362        TCGA-BR-4363        TCGA-BR-4366        TCGA-BR-4368 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-4369        TCGA-BR-4370        TCGA-BR-4371        TCGA-BR-6452 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6453        TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6457        TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6565        TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6707        TCGA-BR-6709        TCGA-BR-6801        TCGA-BR-6802 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7703        TCGA-BR-7704        TCGA-BR-7707        TCGA-BR-7715 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7716        TCGA-BR-7717        TCGA-BR-7722        TCGA-BR-7723 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8060 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8077        TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8081 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289        TCGA-BR-8291 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8361        TCGA-BR-8363 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8366        TCGA-BR-8367 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8371        TCGA-BR-8372 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8373        TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8484        TCGA-BR-8485 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8486        TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8589 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8682        TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A44U        TCGA-BR-A452 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A453        TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4J2        TCGA-BR-A4J4        TCGA-BR-A4J5        TCGA-BR-A4J6 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4PE 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4PF        TCGA-BR-A4QI        TCGA-BR-A4QM        TCGA-CD-5798 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5803 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8528        TCGA-CD-8529 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532        TCGA-CD-8533 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-8534        TCGA-CD-8535        TCGA-CD-8536        TCGA-CD-A486 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-A487        TCGA-CD-A489        TCGA-CD-A48A        TCGA-CD-A48C 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI        TCGA-CD-A4MJ 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-4301        TCGA-CG-4304        TCGA-CG-4305        TCGA-CG-4306 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-4436        TCGA-CG-4437        TCGA-CG-4438        TCGA-CG-4440 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-4441        TCGA-CG-4442        TCGA-CG-4443        TCGA-CG-4444 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-4449        TCGA-CG-4460        TCGA-CG-4462        TCGA-CG-4465 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-4466        TCGA-CG-4469        TCGA-CG-4474        TCGA-CG-4475 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-4476        TCGA-CG-4477        TCGA-CG-5716        TCGA-CG-5717 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720        TCGA-CG-5721 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5726        TCGA-CG-5732        TCGA-CG-5734        TCGA-D7-5577 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-5578        TCGA-D7-6518        TCGA-D7-6519        TCGA-D7-6520 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524        TCGA-D7-6525 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6526        TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8573        TCGA-D7-8574 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-8575        TCGA-D7-8576        TCGA-D7-8578        TCGA-D7-8579 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A4YT        TCGA-D7-A4YU        TCGA-D7-A4YV        TCGA-D7-A4YX 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-D7-A6EV        TCGA-D7-A6EX 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A6EY        TCGA-D7-A6EZ        TCGA-D7-A6F0        TCGA-D7-A6F2 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A747        TCGA-D7-A748        TCGA-D7-A74A        TCGA-EQ-8122 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-EQ-A4SO        TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-F1-A448        TCGA-F1-A72C        TCGA-FP-7735        TCGA-FP-7829 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-FP-7916        TCGA-FP-7998        TCGA-FP-8099        TCGA-FP-8209 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-FP-8210        TCGA-FP-8211        TCGA-FP-8631        TCGA-FP-A4BE 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-FP-A4BF        TCGA-FP-A8CX        TCGA-FP-A9TM        TCGA-HF-7131 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HF-7132        TCGA-HF-7133        TCGA-HF-7134        TCGA-HF-7136 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HF-A5NB        TCGA-HJ-7597        TCGA-HU-8238        TCGA-HU-8243 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-8244        TCGA-HU-8249        TCGA-HU-8602        TCGA-HU-8604 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-8608        TCGA-HU-8610        TCGA-HU-A4G2        TCGA-HU-A4G3 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4G6        TCGA-HU-A4G8        TCGA-HU-A4G9        TCGA-HU-A4GC 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4GD        TCGA-HU-A4GF        TCGA-HU-A4GH        TCGA-HU-A4GJ 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4GN        TCGA-HU-A4GP        TCGA-HU-A4GQ        TCGA-HU-A4GT 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4GU        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H0 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4H2        TCGA-HU-A4H3        TCGA-HU-A4H4        TCGA-HU-A4H5 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4H6        TCGA-HU-A4H8        TCGA-HU-A4HB        TCGA-HU-A4HD 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-A6RI        TCGA-IN-A6RJ        TCGA-IN-A6RL        TCGA-IN-A6RN 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-A6RO        TCGA-IN-A6RR        TCGA-IN-A6RS        TCGA-IN-A7NR 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-A7NT        TCGA-IN-A7NU        TCGA-IN-AB1V        TCGA-IN-AB1X 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IP-7968        TCGA-KB-A6F7        TCGA-KB-A93G        TCGA-KB-A93J 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-MX-A5UG        TCGA-MX-A5UJ        TCGA-MX-A663        TCGA-MX-A666 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-R5-A7O7        TCGA-R5-A7ZE        TCGA-R5-A7ZF        TCGA-R5-A7ZI 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-R5-A7ZR        TCGA-R5-A805        TCGA-RD-A7BS        TCGA-RD-A7BT 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-RD-A7BW        TCGA-RD-A7C1        TCGA-RD-A8MV        TCGA-RD-A8MW 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-RD-A8N0        TCGA-RD-A8N1        TCGA-RD-A8N2        TCGA-RD-A8N4 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-RD-A8N5        TCGA-RD-A8N6        TCGA-RD-A8N9        TCGA-SW-A7EA 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-SW-A7EB        TCGA-VQ-A8DT        TCGA-VQ-A8DU        TCGA-VQ-A8DV 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A8DZ        TCGA-VQ-A8E2        TCGA-VQ-A8E7        TCGA-VQ-A8P2 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A8P3        TCGA-VQ-A8PE        TCGA-VQ-A8PK        TCGA-VQ-A8PM 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A8PQ        TCGA-VQ-A91Q        TCGA-VQ-A91V        TCGA-VQ-A92D 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A94T        TCGA-VQ-AA64        TCGA-VQ-AA68        TCGA-VQ-AA69 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-AA6A        TCGA-VQ-AA6B        TCGA-VQ-AA6F        TCGA-VQ-AA6G 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-AA6I        TCGA-VQ-AA6J        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM116 MUTATED        2      1      0      0      0      0
  TMEM116 WILD-TYPE     50     63     72    104     40     59
D869V7, multiclass
        clus
vv       TMEM116 MUTATED TMEM116 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               1                63
  CLUS_3               0                72
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM116 MUTATED        3      0      0
  TMEM116 WILD-TYPE    214     75     99
D869V8, multiclass
        clus
vv       TMEM116 MUTATED TMEM116 WILD-TYPE
  CLUS_1               3               214
  CLUS_2               0                75
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM116 MUTATED        2      0      0
  TMEM116 WILD-TYPE    119    108     72
D869V9, multiclass
[1] "Remove cluster labels:" "TMEM116 MUTATED"       
clus
  TMEM116 MUTATED TMEM116 WILD-TYPE 
                2               299 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-6452        TCGA-BR-6453 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7703        TCGA-BR-7704        TCGA-BR-7707        TCGA-BR-7715 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7717        TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7957        TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8059        TCGA-BR-8060        TCGA-BR-8077        TCGA-BR-8078 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8360 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8361        TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8370        TCGA-BR-8371 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8372        TCGA-BR-8373        TCGA-BR-8380        TCGA-BR-8381 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8485 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8486        TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8590 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676        TCGA-BR-8677 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680        TCGA-BR-8682 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8683        TCGA-BR-8687        TCGA-BR-8690        TCGA-BR-A44T 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A452        TCGA-BR-A453        TCGA-BR-A4CQ        TCGA-BR-A4CR 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4CS        TCGA-BR-A4IU        TCGA-BR-A4IV        TCGA-BR-A4IY 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4IZ        TCGA-BR-A4J1        TCGA-BR-A4J5        TCGA-BR-A4J6 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4QI 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5804 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525        TCGA-CD-8526 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-8527        TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-8532        TCGA-CD-8533        TCGA-CD-8534        TCGA-CD-8535 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-4449        TCGA-CG-5716 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576        TCGA-D7-8578 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU        TCGA-D7-A4YV 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-D7-A6ET        TCGA-D7-A6EV 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A6EX        TCGA-D7-A6EY        TCGA-D7-A6EZ        TCGA-D7-A6F0 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A6F2        TCGA-D7-A747        TCGA-D7-A748        TCGA-D7-A74A 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A74B        TCGA-EQ-5647        TCGA-EQ-8122        TCGA-F1-6177 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7735 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-FP-7829        TCGA-FP-7998        TCGA-FP-8099        TCGA-FP-8209 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-FP-8210        TCGA-FP-8211        TCGA-FP-8631        TCGA-FP-A4BE 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-FP-A9TM        TCGA-HF-7131        TCGA-HF-7132        TCGA-HF-7134 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HF-7136        TCGA-HU-8238        TCGA-HU-8243        TCGA-HU-8602 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-8604        TCGA-HU-8608        TCGA-HU-A4G3        TCGA-HU-A4G8 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4GC        TCGA-HU-A4GD        TCGA-HU-A4GF        TCGA-HU-A4GH 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4GJ        TCGA-HU-A4GN        TCGA-HU-A4GQ        TCGA-HU-A4GT 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2        TCGA-HU-A4H4 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8        TCGA-HU-A4HB 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-A6RI        TCGA-IN-A6RJ        TCGA-IN-A6RL        TCGA-IN-A6RN 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-A6RP        TCGA-IN-A7NR        TCGA-IN-A7NT        TCGA-IN-A7NU 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-AB1V        TCGA-IN-AB1X        TCGA-IP-7968        TCGA-KB-A6F5 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-KB-A6F7        TCGA-KB-A93J        TCGA-MX-A5UG        TCGA-MX-A5UJ 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-MX-A663        TCGA-MX-A666        TCGA-R5-A7O7        TCGA-R5-A7ZE 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-R5-A7ZF        TCGA-R5-A7ZI        TCGA-R5-A7ZR        TCGA-R5-A804 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-R5-A805        TCGA-RD-A7BS        TCGA-RD-A7BW        TCGA-RD-A7C1 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-RD-A8MV        TCGA-RD-A8MW        TCGA-RD-A8N0        TCGA-RD-A8N1 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-RD-A8N5        TCGA-RD-A8N6        TCGA-RD-A8N9        TCGA-SW-A7EA 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-SW-A7EB        TCGA-VQ-A8DL        TCGA-VQ-A8DU        TCGA-VQ-A8DV 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A8E2        TCGA-VQ-A8E7        TCGA-VQ-A8P2        TCGA-VQ-A8P3 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A8PE        TCGA-VQ-A8PK        TCGA-VQ-A8PM        TCGA-VQ-A8PQ 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A91Q        TCGA-VQ-A91V        TCGA-VQ-A92D        TCGA-VQ-A94T 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-AA64        TCGA-VQ-AA68        TCGA-VQ-AA69        TCGA-VQ-AA6A 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-AA6B        TCGA-VQ-AA6F        TCGA-VQ-AA6G        TCGA-VQ-AA6I 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-AA6J        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM116 MUTATED        0      0      0      0      2
  TMEM116 WILD-TYPE     88     66     45     55     45
D869V10, multiclass
[1] "Remove cluster labels:" "TMEM116 MUTATED"       
clus
  TMEM116 MUTATED TMEM116 WILD-TYPE 
                2               299 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-6452        TCGA-BR-6453 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7703        TCGA-BR-7704        TCGA-BR-7707        TCGA-BR-7715 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7717        TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-7957        TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8059        TCGA-BR-8060        TCGA-BR-8077        TCGA-BR-8078 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8360 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8361        TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8370        TCGA-BR-8371 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8372        TCGA-BR-8373        TCGA-BR-8380        TCGA-BR-8381 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8485 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8486        TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8590 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676        TCGA-BR-8677 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8680        TCGA-BR-8682 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-8683        TCGA-BR-8687        TCGA-BR-8690        TCGA-BR-A44T 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A452        TCGA-BR-A453        TCGA-BR-A4CQ        TCGA-BR-A4CR 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4CS        TCGA-BR-A4IU        TCGA-BR-A4IV        TCGA-BR-A4IY 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4IZ        TCGA-BR-A4J1        TCGA-BR-A4J5        TCGA-BR-A4J6 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4QI 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5804 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525        TCGA-CD-8526 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-8527        TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-8532        TCGA-CD-8533        TCGA-CD-8534        TCGA-CD-8535 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-4449        TCGA-CG-5716 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576        TCGA-D7-8578 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU        TCGA-D7-A4YV 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-D7-A6ET        TCGA-D7-A6EV 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A6EX        TCGA-D7-A6EY        TCGA-D7-A6EZ        TCGA-D7-A6F0 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A6F2        TCGA-D7-A747        TCGA-D7-A748        TCGA-D7-A74A 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-D7-A74B        TCGA-EQ-5647        TCGA-EQ-8122        TCGA-F1-6177 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7735 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-FP-7829        TCGA-FP-7998        TCGA-FP-8099        TCGA-FP-8209 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-FP-8210        TCGA-FP-8211        TCGA-FP-8631        TCGA-FP-A4BE 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-FP-A9TM        TCGA-HF-7131        TCGA-HF-7132        TCGA-HF-7134 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HF-7136        TCGA-HU-8238        TCGA-HU-8243        TCGA-HU-8602 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-8604        TCGA-HU-8608        TCGA-HU-A4G3        TCGA-HU-A4G8 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4GC        TCGA-HU-A4GD        TCGA-HU-A4GF        TCGA-HU-A4GH 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4GJ        TCGA-HU-A4GN        TCGA-HU-A4GQ        TCGA-HU-A4GT 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2        TCGA-HU-A4H4 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4H8        TCGA-HU-A4HB 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-A6RI        TCGA-IN-A6RJ        TCGA-IN-A6RL        TCGA-IN-A6RN 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-A6RP        TCGA-IN-A7NR        TCGA-IN-A7NT        TCGA-IN-A7NU 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-IN-AB1V        TCGA-IN-AB1X        TCGA-IP-7968        TCGA-KB-A6F5 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-KB-A6F7        TCGA-KB-A93J        TCGA-MX-A5UG        TCGA-MX-A5UJ 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-MX-A663        TCGA-MX-A666        TCGA-R5-A7O7        TCGA-R5-A7ZE 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-R5-A7ZF        TCGA-R5-A7ZI        TCGA-R5-A7ZR        TCGA-R5-A804 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-R5-A805        TCGA-RD-A7BS        TCGA-RD-A7BW        TCGA-RD-A7C1 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-RD-A8MV        TCGA-RD-A8MW        TCGA-RD-A8N0        TCGA-RD-A8N1 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-RD-A8N5        TCGA-RD-A8N6        TCGA-RD-A8N9        TCGA-SW-A7EA 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-SW-A7EB        TCGA-VQ-A8DL        TCGA-VQ-A8DU        TCGA-VQ-A8DV 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A8E2        TCGA-VQ-A8E7        TCGA-VQ-A8P2        TCGA-VQ-A8P3 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A8PE        TCGA-VQ-A8PK        TCGA-VQ-A8PM        TCGA-VQ-A8PQ 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-A91Q        TCGA-VQ-A91V        TCGA-VQ-A92D        TCGA-VQ-A94T 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-AA64        TCGA-VQ-AA68        TCGA-VQ-AA69        TCGA-VQ-AA6A 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-AA6B        TCGA-VQ-AA6F        TCGA-VQ-AA6G        TCGA-VQ-AA6I 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 
       TCGA-VQ-AA6J        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" "TMEM116 WILD-TYPE" 

Clustering(870) Variable = IRS4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        8     14      2      0
  IRS4 WILD-TYPE    196    123     45      3
D870V1, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            8            196
  CLUS_2           14            123
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        1     11      3      3      2
  IRS4 WILD-TYPE     38     85     41     85     78
D870V2, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            1             38
  CLUS_2           11             85
  CLUS_3            3             41
  CLUS_4            3             85
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        0      7      5      1      5
  IRS4 WILD-TYPE     26     72     68     81     53
D870V3, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            7             72
  CLUS_3            5             68
  CLUS_4            1             81
  CLUS_5            5             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        2     10      6      0
  IRS4 WILD-TYPE    125     41     65     69
D870V4, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            2            125
  CLUS_2           10             41
  CLUS_3            6             65
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        3      4     13      1      2
  IRS4 WILD-TYPE     81     81     72     68     45
D870V5, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            3             81
  CLUS_2            4             81
  CLUS_3           13             72
  CLUS_4            1             68
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IRS4 MUTATED        5      1      7     10
  IRS4 WILD-TYPE     90     73    114     70
D870V6, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            5             90
  CLUS_2            1             73
  CLUS_3            7            114
  CLUS_4           10             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IRS4 MUTATED        4      8      5      3      2      2
  IRS4 WILD-TYPE     48     56     67    101     38     57
D870V7, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            8             56
  CLUS_3            5             67
  CLUS_4            3            101
  CLUS_5            2             38
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED       18      3      3
  IRS4 WILD-TYPE    199     72     96
D870V8, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1           18            199
  CLUS_2            3             72
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IRS4 MUTATED        7      5      5
  IRS4 WILD-TYPE    114    103     67
D870V9, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            7            114
  CLUS_2            5            103
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IRS4 MUTATED        7      1      5      1      3
  IRS4 WILD-TYPE     81     65     40     54     44
D870V10, multiclass
        clus
vv       IRS4 MUTATED IRS4 WILD-TYPE
  CLUS_1            7             81
  CLUS_2            1             65
  CLUS_3            5             40
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(871) Variable = C9ORF152 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF152 MUTATED        1      2      0      0
  C9ORF152 WILD-TYPE    203    135     47      3
D871V1, multiclass
        clus
vv       C9ORF152 MUTATED C9ORF152 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                2                135
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF152 MUTATED        0      1      1      0      0
  C9ORF152 WILD-TYPE     39     95     43     88     80
D871V2, multiclass
[1] "Remove cluster labels:" "C9ORF152 MUTATED"      
clus
  C9ORF152 MUTATED C9ORF152 WILD-TYPE 
                 2                345 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-B7-A5TI 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-B7-A5TJ         TCGA-B7-A5TK         TCGA-B7-A5TN 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6452         TCGA-BR-6453         TCGA-BR-6454 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6456         TCGA-BR-6457 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6458         TCGA-BR-6563         TCGA-BR-6564 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6565         TCGA-BR-6566         TCGA-BR-6705 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6706         TCGA-BR-6707         TCGA-BR-6709 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6710         TCGA-BR-6801         TCGA-BR-6802 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6803         TCGA-BR-6852         TCGA-BR-7196 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-7197         TCGA-BR-7703         TCGA-BR-7704 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-7707         TCGA-BR-7715         TCGA-BR-7716 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-7717         TCGA-BR-7722         TCGA-BR-7723 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-7851         TCGA-BR-7901         TCGA-BR-7957 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-7958         TCGA-BR-7959         TCGA-BR-8058 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8059         TCGA-BR-8060         TCGA-BR-8077 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8078         TCGA-BR-8080         TCGA-BR-8081 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8285         TCGA-BR-8286         TCGA-BR-8289 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8291         TCGA-BR-8295         TCGA-BR-8297 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8360         TCGA-BR-8361         TCGA-BR-8363 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8364         TCGA-BR-8365         TCGA-BR-8366 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8367         TCGA-BR-8368         TCGA-BR-8369 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8373         TCGA-BR-8380         TCGA-BR-8381 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8382         TCGA-BR-8384         TCGA-BR-8483 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8484         TCGA-BR-8485         TCGA-BR-8486 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8487         TCGA-BR-8588         TCGA-BR-8589 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8590         TCGA-BR-8591         TCGA-BR-8592 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8676         TCGA-BR-8677         TCGA-BR-8678 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8679         TCGA-BR-8680         TCGA-BR-8682 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8683         TCGA-BR-8686         TCGA-BR-8687 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8690         TCGA-BR-A44T         TCGA-BR-A44U 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A452         TCGA-BR-A453         TCGA-BR-A4CQ 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4CR         TCGA-BR-A4CS         TCGA-BR-A4IU 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4IV         TCGA-BR-A4IY         TCGA-BR-A4IZ 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4J1         TCGA-BR-A4J2         TCGA-BR-A4J4 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4J5         TCGA-BR-A4J6         TCGA-BR-A4J7 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4J8         TCGA-BR-A4PD         TCGA-BR-A4PE 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4PF         TCGA-BR-A4QI         TCGA-BR-A4QL 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4QM         TCGA-CD-5798         TCGA-CD-5799 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-5800         TCGA-CD-5801         TCGA-CD-5802 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-5803         TCGA-CD-5804         TCGA-CD-5813 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-8524         TCGA-CD-8525         TCGA-CD-8526 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-8527         TCGA-CD-8528         TCGA-CD-8529 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-8530         TCGA-CD-8531         TCGA-CD-8532 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-8533         TCGA-CD-8534         TCGA-CD-8535 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-8536         TCGA-CD-A486         TCGA-CD-A487 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-A489         TCGA-CD-A48A         TCGA-CD-A48C 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-A4MG         TCGA-CD-A4MH         TCGA-CD-A4MI 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-A4MJ         TCGA-CG-4437         TCGA-CG-4441 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5716         TCGA-CG-5717         TCGA-CG-5718 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5719         TCGA-CG-5720         TCGA-CG-5721 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5722         TCGA-CG-5723         TCGA-CG-5724 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5725         TCGA-CG-5726         TCGA-CG-5727 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5728         TCGA-CG-5730         TCGA-CG-5732 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5733         TCGA-CG-5734         TCGA-D7-5577 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-5578         TCGA-D7-5579         TCGA-D7-6518 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-6519         TCGA-D7-6520         TCGA-D7-6521 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-6522         TCGA-D7-6524         TCGA-D7-6525 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-6526         TCGA-D7-6527         TCGA-D7-6528 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-6815         TCGA-D7-6817         TCGA-D7-6818 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-6820         TCGA-D7-6822         TCGA-D7-8570 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-8572         TCGA-D7-8573         TCGA-D7-8574 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-8575         TCGA-D7-8576         TCGA-D7-8578 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-8579         TCGA-D7-A4YT         TCGA-D7-A4YU 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-A4YV         TCGA-D7-A4YX         TCGA-D7-A4YY 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-A4Z0         TCGA-D7-A6ET         TCGA-D7-A6EV 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-A6EX         TCGA-D7-A6EY         TCGA-D7-A6F0 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-A6F2         TCGA-D7-A747         TCGA-D7-A748 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-A74A         TCGA-D7-A74B         TCGA-EQ-5647 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-EQ-8122         TCGA-EQ-A4SO         TCGA-F1-6177 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-F1-6874         TCGA-F1-6875         TCGA-F1-A448 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-F1-A72C         TCGA-FP-7735         TCGA-FP-7829 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-FP-7916         TCGA-FP-7998         TCGA-FP-8099 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-FP-8209         TCGA-FP-8210         TCGA-FP-8211 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-FP-8631         TCGA-FP-A4BE         TCGA-FP-A4BF 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-FP-A8CX         TCGA-FP-A9TM         TCGA-HF-7131 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HF-7132         TCGA-HF-7133         TCGA-HF-7134 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HF-7136         TCGA-HF-A5NB         TCGA-HJ-7597 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-8238         TCGA-HU-8243         TCGA-HU-8244 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-8249         TCGA-HU-8602         TCGA-HU-8604 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-8608         TCGA-HU-8610         TCGA-HU-A4G2 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4G3         TCGA-HU-A4G6         TCGA-HU-A4G8 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4G9         TCGA-HU-A4GC         TCGA-HU-A4GD 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4GF         TCGA-HU-A4GH         TCGA-HU-A4GJ 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4GN         TCGA-HU-A4GP         TCGA-HU-A4GQ 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4GT         TCGA-HU-A4GU         TCGA-HU-A4GX 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4GY         TCGA-HU-A4H0         TCGA-HU-A4H2 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4H3         TCGA-HU-A4H4         TCGA-HU-A4H5 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4H6         TCGA-HU-A4H8         TCGA-HU-A4HB 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4HD         TCGA-IN-7806         TCGA-IN-7808 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IN-8462         TCGA-IN-8663         TCGA-IN-A6RI 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IN-A6RJ         TCGA-IN-A6RL         TCGA-IN-A6RN 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IN-A6RO         TCGA-IN-A6RP         TCGA-IN-A6RR 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IN-A6RS         TCGA-IN-A7NR         TCGA-IN-A7NT 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IN-A7NU         TCGA-IN-AB1V         TCGA-IN-AB1X 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IP-7968         TCGA-KB-A6F5         TCGA-KB-A6F7 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-KB-A93G         TCGA-KB-A93J         TCGA-MX-A5UG 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-MX-A5UJ         TCGA-MX-A663         TCGA-MX-A666 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-R5-A7O7         TCGA-R5-A7ZE         TCGA-R5-A7ZF 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-R5-A7ZI         TCGA-R5-A7ZR         TCGA-R5-A804 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-R5-A805         TCGA-RD-A7BS         TCGA-RD-A7BT 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-RD-A7BW         TCGA-RD-A7C1         TCGA-RD-A8MV 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-RD-A8MW         TCGA-RD-A8N0         TCGA-RD-A8N1 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-RD-A8N2         TCGA-RD-A8N4         TCGA-RD-A8N5 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-RD-A8N6         TCGA-RD-A8N9         TCGA-SW-A7EA 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-SW-A7EB         TCGA-VQ-A8DL         TCGA-VQ-A8DT 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A8DU         TCGA-VQ-A8DV         TCGA-VQ-A8DZ 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A8E2         TCGA-VQ-A8E7         TCGA-VQ-A8P2 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A8P3         TCGA-VQ-A8PE         TCGA-VQ-A8PK 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A8PM         TCGA-VQ-A8PQ         TCGA-VQ-A91Q 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A91U         TCGA-VQ-A91V         TCGA-VQ-A92D 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A94T         TCGA-VQ-AA64         TCGA-VQ-AA68 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-AA69         TCGA-VQ-AA6A         TCGA-VQ-AA6B 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-AA6F         TCGA-VQ-AA6G         TCGA-VQ-AA6I 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-AA6J         TCGA-VQ-AA6K         TCGA-ZA-A8F6 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF152 MUTATED        0      2      1      0      0
  C9ORF152 WILD-TYPE     26     77     72     82     58
D871V3, multiclass
        clus
vv       C9ORF152 MUTATED C9ORF152 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                2                 77
  CLUS_3                1                 72
  CLUS_4                0                 82
  CLUS_5                0                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF152 MUTATED        2      0      1      0
  C9ORF152 WILD-TYPE    125     51     70     69
D871V4, multiclass
        clus
vv       C9ORF152 MUTATED C9ORF152 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                0                 51
  CLUS_3                1                 70
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF152 MUTATED        0      1      2      0      0
  C9ORF152 WILD-TYPE     84     84     83     69     47
D871V5, multiclass
        clus
vv       C9ORF152 MUTATED C9ORF152 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                2                 83
  CLUS_4                0                 69
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C9ORF152 MUTATED        1      1      1      0
  C9ORF152 WILD-TYPE     94     73    120     80
D871V6, multiclass
        clus
vv       C9ORF152 MUTATED C9ORF152 WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                0                 80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C9ORF152 MUTATED        0      1      1      1      0      0
  C9ORF152 WILD-TYPE     52     63     71    103     40     59
D871V7, multiclass
        clus
vv       C9ORF152 MUTATED C9ORF152 WILD-TYPE
  CLUS_1                0                 52
  CLUS_2                1                 63
  CLUS_3                1                 71
  CLUS_4                1                103
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF152 MUTATED        3      0      0
  C9ORF152 WILD-TYPE    214     75     99
D871V8, multiclass
        clus
vv       C9ORF152 MUTATED C9ORF152 WILD-TYPE
  CLUS_1                3                214
  CLUS_2                0                 75
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C9ORF152 MUTATED        1      0      1
  C9ORF152 WILD-TYPE    120    108     71
D871V9, multiclass
[1] "Remove cluster labels:" "C9ORF152 MUTATED"      
clus
  C9ORF152 MUTATED C9ORF152 WILD-TYPE 
                 2                299 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-B7-A5TI 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-B7-A5TJ         TCGA-B7-A5TK         TCGA-B7-A5TN 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6452         TCGA-BR-6453         TCGA-BR-6454 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6456         TCGA-BR-6457 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6458         TCGA-BR-6563         TCGA-BR-6564 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6565         TCGA-BR-6566         TCGA-BR-6705 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6706         TCGA-BR-6707         TCGA-BR-6709 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6710         TCGA-BR-6801         TCGA-BR-6802 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6803         TCGA-BR-6852         TCGA-BR-7196 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-7197         TCGA-BR-7703         TCGA-BR-7704 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-7707         TCGA-BR-7715         TCGA-BR-7717 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-7723         TCGA-BR-7851         TCGA-BR-7901 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-7957         TCGA-BR-7958         TCGA-BR-7959 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8058         TCGA-BR-8059         TCGA-BR-8060 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8077         TCGA-BR-8078         TCGA-BR-8080 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8286         TCGA-BR-8289         TCGA-BR-8291 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8295         TCGA-BR-8297         TCGA-BR-8360 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8361         TCGA-BR-8363         TCGA-BR-8364 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8365         TCGA-BR-8368         TCGA-BR-8369 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8373         TCGA-BR-8380         TCGA-BR-8381 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8382         TCGA-BR-8384         TCGA-BR-8483 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8485         TCGA-BR-8486         TCGA-BR-8487 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8588         TCGA-BR-8590         TCGA-BR-8591 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8592         TCGA-BR-8676         TCGA-BR-8677 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8678         TCGA-BR-8679         TCGA-BR-8680 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8682         TCGA-BR-8683         TCGA-BR-8687 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8690         TCGA-BR-A44T         TCGA-BR-A452 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A453         TCGA-BR-A4CQ         TCGA-BR-A4CR 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4CS         TCGA-BR-A4IU         TCGA-BR-A4IV 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4IY         TCGA-BR-A4IZ         TCGA-BR-A4J1 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4J5         TCGA-BR-A4J6         TCGA-BR-A4J7 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4J8         TCGA-BR-A4PD         TCGA-BR-A4QI 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4QL         TCGA-BR-A4QM         TCGA-CD-5798 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-5799         TCGA-CD-5800         TCGA-CD-5801 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-5802         TCGA-CD-5803         TCGA-CD-5804 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CD-8524         TCGA-CD-8525 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-8526         TCGA-CD-8527         TCGA-CD-8529 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-8530         TCGA-CD-8531         TCGA-CD-8532 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-8533         TCGA-CD-8534         TCGA-CD-8535 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-8536         TCGA-CD-A486         TCGA-CD-A487 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-A489         TCGA-CD-A48C         TCGA-CD-A4MG 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-A4MH         TCGA-CD-A4MI         TCGA-CG-4437 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-4441         TCGA-CG-4449         TCGA-CG-5716 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-6822         TCGA-D7-8570         TCGA-D7-8572 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-8574         TCGA-D7-8575         TCGA-D7-8576 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-8578         TCGA-D7-8579         TCGA-D7-A4YT 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-A4YU         TCGA-D7-A4YV         TCGA-D7-A4YY 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-A4Z0         TCGA-D7-A6ET         TCGA-D7-A6EV 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-A6EX         TCGA-D7-A6EY         TCGA-D7-A6F0 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-A6F2         TCGA-D7-A747         TCGA-D7-A748 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-A74A         TCGA-D7-A74B         TCGA-EQ-5647 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-EQ-8122         TCGA-F1-6177         TCGA-F1-6874 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-F1-6875         TCGA-F1-A448         TCGA-FP-7735 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-FP-7829         TCGA-FP-7998         TCGA-FP-8099 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-FP-8209         TCGA-FP-8210         TCGA-FP-8211 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-FP-8631         TCGA-FP-A4BE         TCGA-FP-A9TM 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HF-7131         TCGA-HF-7132         TCGA-HF-7134 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HF-7136         TCGA-HU-8238         TCGA-HU-8243 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-8602         TCGA-HU-8604         TCGA-HU-8608 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4G3         TCGA-HU-A4G8         TCGA-HU-A4GC 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4GD         TCGA-HU-A4GF         TCGA-HU-A4GH 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4GJ         TCGA-HU-A4GN         TCGA-HU-A4GQ 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4GT         TCGA-HU-A4GX         TCGA-HU-A4GY 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4H2         TCGA-HU-A4H4         TCGA-HU-A4H5 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4H6         TCGA-HU-A4H8         TCGA-HU-A4HB 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IN-7806         TCGA-IN-7808         TCGA-IN-8462 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IN-8663         TCGA-IN-A6RI         TCGA-IN-A6RJ 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IN-A6RL         TCGA-IN-A6RN         TCGA-IN-A6RP 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IN-A7NR         TCGA-IN-A7NT         TCGA-IN-A7NU 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IN-AB1V         TCGA-IN-AB1X         TCGA-IP-7968 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-KB-A6F5         TCGA-KB-A6F7         TCGA-KB-A93J 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-MX-A5UG         TCGA-MX-A5UJ         TCGA-MX-A663 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-MX-A666         TCGA-R5-A7O7         TCGA-R5-A7ZE 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-R5-A7ZF         TCGA-R5-A7ZI         TCGA-R5-A7ZR 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-R5-A804         TCGA-R5-A805         TCGA-RD-A7BS 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-RD-A7BW         TCGA-RD-A7C1         TCGA-RD-A8MV 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-RD-A8MW         TCGA-RD-A8N0         TCGA-RD-A8N1 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-RD-A8N5         TCGA-RD-A8N6         TCGA-RD-A8N9 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-SW-A7EA         TCGA-SW-A7EB         TCGA-VQ-A8DL 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A8DU         TCGA-VQ-A8DV         TCGA-VQ-A8E2 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A8E7         TCGA-VQ-A8P2         TCGA-VQ-A8P3 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A8PE         TCGA-VQ-A8PK         TCGA-VQ-A8PM 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A8PQ         TCGA-VQ-A91Q         TCGA-VQ-A91U 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A91V         TCGA-VQ-A92D         TCGA-VQ-A94T 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-AA64         TCGA-VQ-AA68         TCGA-VQ-AA69 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-AA6A         TCGA-VQ-AA6B         TCGA-VQ-AA6F 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-AA6G         TCGA-VQ-AA6I         TCGA-VQ-AA6J 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-AA6K         TCGA-ZA-A8F6 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C9ORF152 MUTATED        1      0      0      0      1
  C9ORF152 WILD-TYPE     87     66     45     55     46
D871V10, multiclass
[1] "Remove cluster labels:" "C9ORF152 MUTATED"      
clus
  C9ORF152 MUTATED C9ORF152 WILD-TYPE 
                 2                299 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-B7-A5TI 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-B7-A5TJ         TCGA-B7-A5TK         TCGA-B7-A5TN 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6452         TCGA-BR-6453         TCGA-BR-6454 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6456         TCGA-BR-6457 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6458         TCGA-BR-6563         TCGA-BR-6564 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6565         TCGA-BR-6566         TCGA-BR-6705 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6706         TCGA-BR-6707         TCGA-BR-6709 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6710         TCGA-BR-6801         TCGA-BR-6802 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-6803         TCGA-BR-6852         TCGA-BR-7196 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-7197         TCGA-BR-7703         TCGA-BR-7704 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-7707         TCGA-BR-7715         TCGA-BR-7717 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-7723         TCGA-BR-7851         TCGA-BR-7901 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-7957         TCGA-BR-7958         TCGA-BR-7959 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8058         TCGA-BR-8059         TCGA-BR-8060 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8077         TCGA-BR-8078         TCGA-BR-8080 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8286         TCGA-BR-8289         TCGA-BR-8291 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8295         TCGA-BR-8297         TCGA-BR-8360 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8361         TCGA-BR-8363         TCGA-BR-8364 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8365         TCGA-BR-8368         TCGA-BR-8369 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8373         TCGA-BR-8380         TCGA-BR-8381 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8382         TCGA-BR-8384         TCGA-BR-8483 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8485         TCGA-BR-8486         TCGA-BR-8487 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8588         TCGA-BR-8590         TCGA-BR-8591 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8592         TCGA-BR-8676         TCGA-BR-8677 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8678         TCGA-BR-8679         TCGA-BR-8680 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8682         TCGA-BR-8683         TCGA-BR-8687 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-8690         TCGA-BR-A44T         TCGA-BR-A452 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A453         TCGA-BR-A4CQ         TCGA-BR-A4CR 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4CS         TCGA-BR-A4IU         TCGA-BR-A4IV 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4IY         TCGA-BR-A4IZ         TCGA-BR-A4J1 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4J5         TCGA-BR-A4J6         TCGA-BR-A4J7 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4J8         TCGA-BR-A4PD         TCGA-BR-A4QI 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-BR-A4QL         TCGA-BR-A4QM         TCGA-CD-5798 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-5799         TCGA-CD-5800         TCGA-CD-5801 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-5802         TCGA-CD-5803         TCGA-CD-5804 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-5813         TCGA-CD-8524         TCGA-CD-8525 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-8526         TCGA-CD-8527         TCGA-CD-8529 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-8530         TCGA-CD-8531         TCGA-CD-8532 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-8533         TCGA-CD-8534         TCGA-CD-8535 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-8536         TCGA-CD-A486         TCGA-CD-A487 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-A489         TCGA-CD-A48C         TCGA-CD-A4MG 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CD-A4MH         TCGA-CD-A4MI         TCGA-CG-4437 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-4441         TCGA-CG-4449         TCGA-CG-5716 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5722 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5723         TCGA-CG-5724         TCGA-CG-5725 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5726         TCGA-CG-5727         TCGA-CG-5728 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5730         TCGA-CG-5732         TCGA-CG-5733 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-CG-5734         TCGA-D7-5577         TCGA-D7-5578 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-5579         TCGA-D7-6518         TCGA-D7-6519 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-6520         TCGA-D7-6521         TCGA-D7-6522 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-6524         TCGA-D7-6525         TCGA-D7-6526 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-6822         TCGA-D7-8570         TCGA-D7-8572 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-8574         TCGA-D7-8575         TCGA-D7-8576 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-8578         TCGA-D7-8579         TCGA-D7-A4YT 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-A4YU         TCGA-D7-A4YV         TCGA-D7-A4YY 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-A4Z0         TCGA-D7-A6ET         TCGA-D7-A6EV 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-A6EX         TCGA-D7-A6EY         TCGA-D7-A6F0 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-A6F2         TCGA-D7-A747         TCGA-D7-A748 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-D7-A74A         TCGA-D7-A74B         TCGA-EQ-5647 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-EQ-8122         TCGA-F1-6177         TCGA-F1-6874 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-F1-6875         TCGA-F1-A448         TCGA-FP-7735 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-FP-7829         TCGA-FP-7998         TCGA-FP-8099 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-FP-8209         TCGA-FP-8210         TCGA-FP-8211 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-FP-8631         TCGA-FP-A4BE         TCGA-FP-A9TM 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HF-7131         TCGA-HF-7132         TCGA-HF-7134 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HF-7136         TCGA-HU-8238         TCGA-HU-8243 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-8602         TCGA-HU-8604         TCGA-HU-8608 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4G3         TCGA-HU-A4G8         TCGA-HU-A4GC 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4GD         TCGA-HU-A4GF         TCGA-HU-A4GH 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4GJ         TCGA-HU-A4GN         TCGA-HU-A4GQ 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4GT         TCGA-HU-A4GX         TCGA-HU-A4GY 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4H2         TCGA-HU-A4H4         TCGA-HU-A4H5 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-HU-A4H6         TCGA-HU-A4H8         TCGA-HU-A4HB 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IN-7806         TCGA-IN-7808         TCGA-IN-8462 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IN-8663         TCGA-IN-A6RI         TCGA-IN-A6RJ 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IN-A6RL         TCGA-IN-A6RN         TCGA-IN-A6RP 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IN-A7NR         TCGA-IN-A7NT         TCGA-IN-A7NU 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-IN-AB1V         TCGA-IN-AB1X         TCGA-IP-7968 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-KB-A6F5         TCGA-KB-A6F7         TCGA-KB-A93J 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-MX-A5UG         TCGA-MX-A5UJ         TCGA-MX-A663 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-MX-A666         TCGA-R5-A7O7         TCGA-R5-A7ZE 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-R5-A7ZF         TCGA-R5-A7ZI         TCGA-R5-A7ZR 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-R5-A804         TCGA-R5-A805         TCGA-RD-A7BS 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-RD-A7BW         TCGA-RD-A7C1         TCGA-RD-A8MV 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-RD-A8MW         TCGA-RD-A8N0         TCGA-RD-A8N1 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-RD-A8N5         TCGA-RD-A8N6         TCGA-RD-A8N9 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-SW-A7EA         TCGA-SW-A7EB         TCGA-VQ-A8DL 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A8DU         TCGA-VQ-A8DV         TCGA-VQ-A8E2 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A8E7         TCGA-VQ-A8P2         TCGA-VQ-A8P3 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A8PE         TCGA-VQ-A8PK         TCGA-VQ-A8PM 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A8PQ         TCGA-VQ-A91Q         TCGA-VQ-A91U 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-A91V         TCGA-VQ-A92D         TCGA-VQ-A94T 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-AA64         TCGA-VQ-AA68         TCGA-VQ-AA69 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-AA6A         TCGA-VQ-AA6B         TCGA-VQ-AA6F 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-AA6G         TCGA-VQ-AA6I         TCGA-VQ-AA6J 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 
        TCGA-VQ-AA6K         TCGA-ZA-A8F6 
"C9ORF152 WILD-TYPE" "C9ORF152 WILD-TYPE" 

Clustering(872) Variable = YIF1A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIF1A MUTATED        2      3      0      0
  YIF1A WILD-TYPE    202    134     47      3
D872V1, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             2             202
  CLUS_2             3             134
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIF1A MUTATED        0      3      0      1      0
  YIF1A WILD-TYPE     39     93     44     87     80
D872V2, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIF1A MUTATED        0      1      2      1      1
  YIF1A WILD-TYPE     26     78     71     81     57
D872V3, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIF1A MUTATED        2      2      1      0
  YIF1A WILD-TYPE    125     49     70     69
D872V4, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             2             125
  CLUS_2             2              49
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIF1A MUTATED        1      1      3      0      0
  YIF1A WILD-TYPE     83     84     82     69     47
D872V5, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             3              82
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  YIF1A MUTATED        0      0      2      3
  YIF1A WILD-TYPE     95     74    119     77
D872V6, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             0              95
  CLUS_2             0              74
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  YIF1A MUTATED        1      1      1      1      0      1
  YIF1A WILD-TYPE     51     63     71    103     40     58
D872V7, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             1              51
  CLUS_2             1              63
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIF1A MUTATED        3      1      1
  YIF1A WILD-TYPE    214     74     98
D872V8, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             3             214
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  YIF1A MUTATED        2      2      0
  YIF1A WILD-TYPE    119    106     72
D872V9, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             2             119
  CLUS_2             2             106
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  YIF1A MUTATED        1      1      0      1      1
  YIF1A WILD-TYPE     87     65     45     54     46
D872V10, multiclass
        clus
vv       YIF1A MUTATED YIF1A WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             1              54
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(873) Variable = RUSC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUSC1 MUTATED        4     14      1      0
  RUSC1 WILD-TYPE    200    123     46      3
D873V1, multiclass
        clus
vv       RUSC1 MUTATED RUSC1 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            14             123
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUSC1 MUTATED        4      9      2      0      2
  RUSC1 WILD-TYPE     35     87     42     88     78
D873V2, multiclass
        clus
vv       RUSC1 MUTATED RUSC1 WILD-TYPE
  CLUS_1             4              35
  CLUS_2             9              87
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUSC1 MUTATED        2      5      3      2      2
  RUSC1 WILD-TYPE     24     74     70     80     56
D873V3, multiclass
        clus
vv       RUSC1 MUTATED RUSC1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             5              74
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUSC1 MUTATED        4      6      2      2
  RUSC1 WILD-TYPE    123     45     69     67
D873V4, multiclass
        clus
vv       RUSC1 MUTATED RUSC1 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             6              45
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUSC1 MUTATED        1      2      9      2      4
  RUSC1 WILD-TYPE     83     83     76     67     43
D873V5, multiclass
        clus
vv       RUSC1 MUTATED RUSC1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             9              76
  CLUS_4             2              67
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RUSC1 MUTATED        5      4      2      7
  RUSC1 WILD-TYPE     90     70    119     73
D873V6, multiclass
        clus
vv       RUSC1 MUTATED RUSC1 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             4              70
  CLUS_3             2             119
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RUSC1 MUTATED        8      5      1      1      4      0
  RUSC1 WILD-TYPE     44     59     71    103     36     59
D873V7, multiclass
        clus
vv       RUSC1 MUTATED RUSC1 WILD-TYPE
  CLUS_1             8              44
  CLUS_2             5              59
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             4              36
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUSC1 MUTATED       15      2      2
  RUSC1 WILD-TYPE    202     73     97
D873V8, multiclass
        clus
vv       RUSC1 MUTATED RUSC1 WILD-TYPE
  CLUS_1            15             202
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RUSC1 MUTATED       11      1      5
  RUSC1 WILD-TYPE    110    107     67
D873V9, multiclass
        clus
vv       RUSC1 MUTATED RUSC1 WILD-TYPE
  CLUS_1            11             110
  CLUS_2             1             107
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RUSC1 MUTATED        6      1      2      0      8
  RUSC1 WILD-TYPE     82     65     43     55     39
D873V10, multiclass
        clus
vv       RUSC1 MUTATED RUSC1 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             8              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(874) Variable = CNTLN MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTLN MUTATED        9     22      5      0
  CNTLN WILD-TYPE    195    115     42      3
D874V1, multiclass
        clus
vv       CNTLN MUTATED CNTLN WILD-TYPE
  CLUS_1             9             195
  CLUS_2            22             115
  CLUS_3             5              42
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNTLN MUTATED        2     19      5      3      3
  CNTLN WILD-TYPE     37     77     39     85     77
D874V2, multiclass
        clus
vv       CNTLN MUTATED CNTLN WILD-TYPE
  CLUS_1             2              37
  CLUS_2            19              77
  CLUS_3             5              39
  CLUS_4             3              85
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNTLN MUTATED        2      9     12      0     10
  CNTLN WILD-TYPE     24     70     61     82     48
D874V3, multiclass
        clus
vv       CNTLN MUTATED CNTLN WILD-TYPE
  CLUS_1             2              24
  CLUS_2             9              70
  CLUS_3            12              61
  CLUS_4             0              82
  CLUS_5            10              48
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTLN MUTATED       11     14      7      1
  CNTLN WILD-TYPE    116     37     64     68
D874V4, multiclass
        clus
vv       CNTLN MUTATED CNTLN WILD-TYPE
  CLUS_1            11             116
  CLUS_2            14              37
  CLUS_3             7              64
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNTLN MUTATED        3      5     14      4     10
  CNTLN WILD-TYPE     81     80     71     65     37
D874V5, multiclass
        clus
vv       CNTLN MUTATED CNTLN WILD-TYPE
  CLUS_1             3              81
  CLUS_2             5              80
  CLUS_3            14              71
  CLUS_4             4              65
  CLUS_5            10              37
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNTLN MUTATED        4      4      5     23
  CNTLN WILD-TYPE     91     70    116     57
D874V6, multiclass
        clus
vv       CNTLN MUTATED CNTLN WILD-TYPE
  CLUS_1             4              91
  CLUS_2             4              70
  CLUS_3             5             116
  CLUS_4            23              57
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNTLN MUTATED        9     10      5      6      4      2
  CNTLN WILD-TYPE     43     54     67     98     36     57
D874V7, multiclass
        clus
vv       CNTLN MUTATED CNTLN WILD-TYPE
  CLUS_1             9              43
  CLUS_2            10              54
  CLUS_3             5              67
  CLUS_4             6              98
  CLUS_5             4              36
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNTLN MUTATED       28      3      5
  CNTLN WILD-TYPE    189     72     94
D874V8, multiclass
        clus
vv       CNTLN MUTATED CNTLN WILD-TYPE
  CLUS_1            28             189
  CLUS_2             3              72
  CLUS_3             5              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNTLN MUTATED       14      4      9
  CNTLN WILD-TYPE    107    104     63
D874V9, multiclass
        clus
vv       CNTLN MUTATED CNTLN WILD-TYPE
  CLUS_1            14             107
  CLUS_2             4             104
  CLUS_3             9              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNTLN MUTATED        8      2      6      2      9
  CNTLN WILD-TYPE     80     64     39     53     38
D874V10, multiclass
        clus
vv       CNTLN MUTATED CNTLN WILD-TYPE
  CLUS_1             8              80
  CLUS_2             2              64
  CLUS_3             6              39
  CLUS_4             2              53
  CLUS_5             9              38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(875) Variable = NUAK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUAK1 MUTATED        4     11      3      0
  NUAK1 WILD-TYPE    200    126     44      3
D875V1, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            11             126
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUAK1 MUTATED        2      8      3      1      1
  NUAK1 WILD-TYPE     37     88     41     87     79
D875V2, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             8              88
  CLUS_3             3              41
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUAK1 MUTATED        1      6      2      1      6
  NUAK1 WILD-TYPE     25     73     71     81     52
D875V3, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             6              73
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUAK1 MUTATED        2      8      4      2
  NUAK1 WILD-TYPE    125     43     67     67
D875V4, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             8              43
  CLUS_3             4              67
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUAK1 MUTATED        1      3      8      3      3
  NUAK1 WILD-TYPE     83     82     77     66     44
D875V5, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             8              77
  CLUS_4             3              66
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUAK1 MUTATED        5      2      3      8
  NUAK1 WILD-TYPE     90     72    118     72
D875V6, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             2              72
  CLUS_3             3             118
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NUAK1 MUTATED        4      6      5      2      0      1
  NUAK1 WILD-TYPE     48     58     67    102     40     58
D875V7, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             6              58
  CLUS_3             5              67
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUAK1 MUTATED       14      3      1
  NUAK1 WILD-TYPE    203     72     98
D875V8, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             3              72
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUAK1 MUTATED        8      1      4
  NUAK1 WILD-TYPE    113    107     68
D875V9, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             8             113
  CLUS_2             1             107
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUAK1 MUTATED        4      0      3      1      5
  NUAK1 WILD-TYPE     84     66     42     54     42
D875V10, multiclass
        clus
vv       NUAK1 MUTATED NUAK1 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(876) Variable = GCG MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCG MUTATED        0      6      1      0
  GCG WILD-TYPE    204    131     46      3
D876V1, multiclass
        clus
vv       GCG MUTATED GCG WILD-TYPE
  CLUS_1           0           204
  CLUS_2           6           131
  CLUS_3           1            46
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCG MUTATED        1      3      2      0      1
  GCG WILD-TYPE     38     93     42     88     79
D876V2, multiclass
        clus
vv       GCG MUTATED GCG WILD-TYPE
  CLUS_1           1            38
  CLUS_2           3            93
  CLUS_3           2            42
  CLUS_4           0            88
  CLUS_5           1            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCG MUTATED        1      1      2      0      2
  GCG WILD-TYPE     25     78     71     82     56
D876V3, multiclass
        clus
vv       GCG MUTATED GCG WILD-TYPE
  CLUS_1           1            25
  CLUS_2           1            78
  CLUS_3           2            71
  CLUS_4           0            82
  CLUS_5           2            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCG MUTATED        3      3      0      0
  GCG WILD-TYPE    124     48     71     69
D876V4, multiclass
        clus
vv       GCG MUTATED GCG WILD-TYPE
  CLUS_1           3           124
  CLUS_2           3            48
  CLUS_3           0            71
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCG MUTATED        0      1      5      1      0
  GCG WILD-TYPE     84     84     80     68     47
D876V5, multiclass
        clus
vv       GCG MUTATED GCG WILD-TYPE
  CLUS_1           0            84
  CLUS_2           1            84
  CLUS_3           5            80
  CLUS_4           1            68
  CLUS_5           0            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GCG MUTATED        1      1      2      3
  GCG WILD-TYPE     94     73    119     77
D876V6, multiclass
        clus
vv       GCG MUTATED GCG WILD-TYPE
  CLUS_1           1            94
  CLUS_2           1            73
  CLUS_3           2           119
  CLUS_4           3            77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GCG MUTATED        3      2      1      1      0      0
  GCG WILD-TYPE     49     62     71    103     40     59
D876V7, multiclass
        clus
vv       GCG MUTATED GCG WILD-TYPE
  CLUS_1           3            49
  CLUS_2           2            62
  CLUS_3           1            71
  CLUS_4           1           103
  CLUS_5           0            40
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GCG MUTATED        6      1      0
  GCG WILD-TYPE    211     74     99
D876V8, multiclass
        clus
vv       GCG MUTATED GCG WILD-TYPE
  CLUS_1           6           211
  CLUS_2           1            74
  CLUS_3           0            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  GCG MUTATED        3      0      3
  GCG WILD-TYPE    118    108     69
D876V9, multiclass
        clus
vv       GCG MUTATED GCG WILD-TYPE
  CLUS_1           3           118
  CLUS_2           0           108
  CLUS_3           3            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GCG MUTATED        1      1      2      0      2
  GCG WILD-TYPE     87     65     43     55     45
D876V10, multiclass
        clus
vv       GCG MUTATED GCG WILD-TYPE
  CLUS_1           1            87
  CLUS_2           1            65
  CLUS_3           2            43
  CLUS_4           0            55
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(877) Variable = VPS4B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS4B MUTATED        0      8      0      0
  VPS4B WILD-TYPE    204    129     47      3
D877V1, multiclass
        clus
vv       VPS4B MUTATED VPS4B WILD-TYPE
  CLUS_1             0             204
  CLUS_2             8             129
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS4B MUTATED        1      2      0      0      3
  VPS4B WILD-TYPE     38     94     44     88     77
D877V2, multiclass
        clus
vv       VPS4B MUTATED VPS4B WILD-TYPE
  CLUS_1             1              38
  CLUS_2             2              94
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS4B MUTATED        2      1      2      1      1
  VPS4B WILD-TYPE     24     78     71     81     57
D877V3, multiclass
        clus
vv       VPS4B MUTATED VPS4B WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS4B MUTATED        2      4      1      0
  VPS4B WILD-TYPE    125     47     70     69
D877V4, multiclass
        clus
vv       VPS4B MUTATED VPS4B WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS4B MUTATED        1      1      5      1      0
  VPS4B WILD-TYPE     83     84     80     68     47
D877V5, multiclass
        clus
vv       VPS4B MUTATED VPS4B WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VPS4B MUTATED        3      1      1      3
  VPS4B WILD-TYPE     92     73    120     77
D877V6, multiclass
        clus
vv       VPS4B MUTATED VPS4B WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VPS4B MUTATED        2      3      1      1      0      1
  VPS4B WILD-TYPE     50     61     71    103     40     58
D877V7, multiclass
        clus
vv       VPS4B MUTATED VPS4B WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VPS4B MUTATED        7      0      1
  VPS4B WILD-TYPE    210     75     98
D877V8, multiclass
        clus
vv       VPS4B MUTATED VPS4B WILD-TYPE
  CLUS_1             7             210
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VPS4B MUTATED        3      1      2
  VPS4B WILD-TYPE    118    107     70
D877V9, multiclass
        clus
vv       VPS4B MUTATED VPS4B WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VPS4B MUTATED        1      1      2      0      2
  VPS4B WILD-TYPE     87     65     43     55     45
D877V10, multiclass
        clus
vv       VPS4B MUTATED VPS4B WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(878) Variable = C12ORF40 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF40 MUTATED        3      4      0      0
  C12ORF40 WILD-TYPE    201    133     47      3
D878V1, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                3                201
  CLUS_2                4                133
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C12ORF40 MUTATED        1      2      0      0      1
  C12ORF40 WILD-TYPE     38     94     44     88     79
D878V2, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                2                 94
  CLUS_3                0                 44
  CLUS_4                0                 88
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C12ORF40 MUTATED        2      0      3      1      1
  C12ORF40 WILD-TYPE     24     79     70     81     57
D878V3, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                0                 79
  CLUS_3                3                 70
  CLUS_4                1                 81
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF40 MUTATED        5      2      0      0
  C12ORF40 WILD-TYPE    122     49     71     69
D878V4, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                5                122
  CLUS_2                2                 49
  CLUS_3                0                 71
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C12ORF40 MUTATED        2      2      1      1      1
  C12ORF40 WILD-TYPE     82     83     84     68     46
D878V5, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                2                 82
  CLUS_2                2                 83
  CLUS_3                1                 84
  CLUS_4                1                 68
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C12ORF40 MUTATED        3      0      1      3
  C12ORF40 WILD-TYPE     92     74    120     77
D878V6, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                3                 92
  CLUS_2                0                 74
  CLUS_3                1                120
  CLUS_4                3                 77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C12ORF40 MUTATED        1      2      1      1      0      2
  C12ORF40 WILD-TYPE     51     62     71    103     40     57
D878V7, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                2                 62
  CLUS_3                1                 71
  CLUS_4                1                103
  CLUS_5                0                 40
  CLUS_6                2                 57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF40 MUTATED        5      0      2
  C12ORF40 WILD-TYPE    212     75     97
D878V8, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                5                212
  CLUS_2                0                 75
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C12ORF40 MUTATED        0      2      1
  C12ORF40 WILD-TYPE    121    106     71
D878V9, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                0                121
  CLUS_2                2                106
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C12ORF40 MUTATED        0      1      0      1      1
  C12ORF40 WILD-TYPE     88     65     45     54     46
D878V10, multiclass
        clus
vv       C12ORF40 MUTATED C12ORF40 WILD-TYPE
  CLUS_1                0                 88
  CLUS_2                1                 65
  CLUS_3                0                 45
  CLUS_4                1                 54
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(879) Variable = NHSL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHSL2 MUTATED        1      2      2      0
  NHSL2 WILD-TYPE    203    135     45      3
D879V1, multiclass
        clus
vv       NHSL2 MUTATED NHSL2 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             2             135
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NHSL2 MUTATED        1      4      0      0      1
  NHSL2 WILD-TYPE     38     92     44     88     79
D879V2, multiclass
        clus
vv       NHSL2 MUTATED NHSL2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NHSL2 MUTATED        0      1      2      0      2
  NHSL2 WILD-TYPE     26     78     71     82     56
D879V3, multiclass
        clus
vv       NHSL2 MUTATED NHSL2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHSL2 MUTATED        0      4      1      0
  NHSL2 WILD-TYPE    127     47     70     69
D879V4, multiclass
        clus
vv       NHSL2 MUTATED NHSL2 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NHSL2 MUTATED        0      0      4      1      1
  NHSL2 WILD-TYPE     84     85     81     68     46
D879V5, multiclass
        clus
vv       NHSL2 MUTATED NHSL2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHSL2 MUTATED        2      0      1      3
  NHSL2 WILD-TYPE     93     74    120     77
D879V6, multiclass
        clus
vv       NHSL2 MUTATED NHSL2 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NHSL2 MUTATED        1      3      1      0      1      0
  NHSL2 WILD-TYPE     51     61     71    104     39     59
D879V7, multiclass
        clus
vv       NHSL2 MUTATED NHSL2 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NHSL2 MUTATED        5      1      0
  NHSL2 WILD-TYPE    212     74     99
D879V8, multiclass
        clus
vv       NHSL2 MUTATED NHSL2 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NHSL2 MUTATED        2      0      4
  NHSL2 WILD-TYPE    119    108     68
D879V9, multiclass
        clus
vv       NHSL2 MUTATED NHSL2 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NHSL2 MUTATED        0      0      2      0      4
  NHSL2 WILD-TYPE     88     66     43     55     43
D879V10, multiclass
        clus
vv       NHSL2 MUTATED NHSL2 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(880) Variable = MYO9B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO9B MUTATED        5     14      1      0
  MYO9B WILD-TYPE    199    123     46      3
D880V1, multiclass
        clus
vv       MYO9B MUTATED MYO9B WILD-TYPE
  CLUS_1             5             199
  CLUS_2            14             123
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYO9B MUTATED        2      9      3      2      1
  MYO9B WILD-TYPE     37     87     41     86     79
D880V2, multiclass
        clus
vv       MYO9B MUTATED MYO9B WILD-TYPE
  CLUS_1             2              37
  CLUS_2             9              87
  CLUS_3             3              41
  CLUS_4             2              86
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYO9B MUTATED        2      7      4      0      5
  MYO9B WILD-TYPE     24     72     69     82     53
D880V3, multiclass
        clus
vv       MYO9B MUTATED MYO9B WILD-TYPE
  CLUS_1             2              24
  CLUS_2             7              72
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO9B MUTATED        6      6      4      2
  MYO9B WILD-TYPE    121     45     67     67
D880V4, multiclass
        clus
vv       MYO9B MUTATED MYO9B WILD-TYPE
  CLUS_1             6             121
  CLUS_2             6              45
  CLUS_3             4              67
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYO9B MUTATED        1      3      8      4      2
  MYO9B WILD-TYPE     83     82     77     65     45
D880V5, multiclass
        clus
vv       MYO9B MUTATED MYO9B WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             8              77
  CLUS_4             4              65
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYO9B MUTATED        5      2      3      8
  MYO9B WILD-TYPE     90     72    118     72
D880V6, multiclass
        clus
vv       MYO9B MUTATED MYO9B WILD-TYPE
  CLUS_1             5              90
  CLUS_2             2              72
  CLUS_3             3             118
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYO9B MUTATED        6      8      3      2      1      0
  MYO9B WILD-TYPE     46     56     69    102     39     59
D880V7, multiclass
        clus
vv       MYO9B MUTATED MYO9B WILD-TYPE
  CLUS_1             6              46
  CLUS_2             8              56
  CLUS_3             3              69
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO9B MUTATED       18      0      2
  MYO9B WILD-TYPE    199     75     97
D880V8, multiclass
        clus
vv       MYO9B MUTATED MYO9B WILD-TYPE
  CLUS_1            18             199
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYO9B MUTATED        6      2      5
  MYO9B WILD-TYPE    115    106     67
D880V9, multiclass
        clus
vv       MYO9B MUTATED MYO9B WILD-TYPE
  CLUS_1             6             115
  CLUS_2             2             106
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYO9B MUTATED        5      1      3      0      4
  MYO9B WILD-TYPE     83     65     42     55     43
D880V10, multiclass
        clus
vv       MYO9B MUTATED MYO9B WILD-TYPE
  CLUS_1             5              83
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(881) Variable = PCLO MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCLO MUTATED       34     33     11      1
  PCLO WILD-TYPE    170    104     36      2
D881V1, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1           34            170
  CLUS_2           33            104
  CLUS_3           11             36
  CLUS_4            1              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCLO MUTATED        4     32      5     17      4
  PCLO WILD-TYPE     35     64     39     71     76
D881V2, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1            4             35
  CLUS_2           32             64
  CLUS_3            5             39
  CLUS_4           17             71
  CLUS_5            4             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCLO MUTATED        2     25     15     10     11
  PCLO WILD-TYPE     24     54     58     72     47
D881V3, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1            2             24
  CLUS_2           25             54
  CLUS_3           15             58
  CLUS_4           10             72
  CLUS_5           11             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCLO MUTATED       18     20     20      5
  PCLO WILD-TYPE    109     31     51     64
D881V4, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1           18            109
  CLUS_2           20             31
  CLUS_3           20             51
  CLUS_4            5             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCLO MUTATED       15     12     23     15     13
  PCLO WILD-TYPE     69     73     62     54     34
D881V5, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1           15             69
  CLUS_2           12             73
  CLUS_3           23             62
  CLUS_4           15             54
  CLUS_5           13             34
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCLO MUTATED       22     12     17     27
  PCLO WILD-TYPE     73     62    104     53
D881V6, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1           22             73
  CLUS_2           12             62
  CLUS_3           17            104
  CLUS_4           27             53
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCLO MUTATED       18     20     12      9      8     12
  PCLO WILD-TYPE     34     44     60     95     32     47
D881V7, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1           18             34
  CLUS_2           20             44
  CLUS_3           12             60
  CLUS_4            9             95
  CLUS_5            8             32
  CLUS_6           12             47
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCLO MUTATED       54      6     19
  PCLO WILD-TYPE    163     69     80
D881V8, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1           54            163
  CLUS_2            6             69
  CLUS_3           19             80
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PCLO MUTATED       28     10     14
  PCLO WILD-TYPE     93     98     58
D881V9, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1           28             93
  CLUS_2           10             98
  CLUS_3           14             58
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCLO MUTATED       12      4      8     11     17
  PCLO WILD-TYPE     76     62     37     44     30
D881V10, multiclass
        clus
vv       PCLO MUTATED PCLO WILD-TYPE
  CLUS_1           12             76
  CLUS_2            4             62
  CLUS_3            8             37
  CLUS_4           11             44
  CLUS_5           17             30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(882) Variable = KCNK13 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNK13 MUTATED        2      6      2      0
  KCNK13 WILD-TYPE    202    131     45      3
D882V1, multiclass
        clus
vv       KCNK13 MUTATED KCNK13 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              6              131
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNK13 MUTATED        1      7      0      2      0
  KCNK13 WILD-TYPE     38     89     44     86     80
D882V2, multiclass
        clus
vv       KCNK13 MUTATED KCNK13 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              7               89
  CLUS_3              0               44
  CLUS_4              2               86
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNK13 MUTATED        0      1      4      1      4
  KCNK13 WILD-TYPE     26     78     69     81     54
D882V3, multiclass
        clus
vv       KCNK13 MUTATED KCNK13 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNK13 MUTATED        3      5      1      1
  KCNK13 WILD-TYPE    124     46     70     68
D882V4, multiclass
        clus
vv       KCNK13 MUTATED KCNK13 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              5               46
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNK13 MUTATED        1      4      5      0      1
  KCNK13 WILD-TYPE     83     81     80     69     46
D882V5, multiclass
        clus
vv       KCNK13 MUTATED KCNK13 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              4               81
  CLUS_3              5               80
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNK13 MUTATED        0      3      1      7
  KCNK13 WILD-TYPE     95     71    120     73
D882V6, multiclass
        clus
vv       KCNK13 MUTATED KCNK13 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              3               71
  CLUS_3              1              120
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNK13 MUTATED        4      1      1      4      1      0
  KCNK13 WILD-TYPE     48     63     71    100     39     59
D882V7, multiclass
        clus
vv       KCNK13 MUTATED KCNK13 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              1               63
  CLUS_3              1               71
  CLUS_4              4              100
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCNK13 MUTATED        7      2      2
  KCNK13 WILD-TYPE    210     73     97
D882V8, multiclass
        clus
vv       KCNK13 MUTATED KCNK13 WILD-TYPE
  CLUS_1              7              210
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KCNK13 MUTATED        4      3      2
  KCNK13 WILD-TYPE    117    105     70
D882V9, multiclass
        clus
vv       KCNK13 MUTATED KCNK13 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              3              105
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNK13 MUTATED        3      2      2      0      2
  KCNK13 WILD-TYPE     85     64     43     55     45
D882V10, multiclass
        clus
vv       KCNK13 MUTATED KCNK13 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              2               64
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(883) Variable = SHMT2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHMT2 MUTATED        2      8      0      0
  SHMT2 WILD-TYPE    202    129     47      3
D883V1, multiclass
        clus
vv       SHMT2 MUTATED SHMT2 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             8             129
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHMT2 MUTATED        0      4      0      1      2
  SHMT2 WILD-TYPE     39     92     44     87     78
D883V2, multiclass
        clus
vv       SHMT2 MUTATED SHMT2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHMT2 MUTATED        1      2      5      1      0
  SHMT2 WILD-TYPE     25     77     68     81     58
D883V3, multiclass
        clus
vv       SHMT2 MUTATED SHMT2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHMT2 MUTATED        1      5      2      1
  SHMT2 WILD-TYPE    126     46     69     68
D883V4, multiclass
        clus
vv       SHMT2 MUTATED SHMT2 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHMT2 MUTATED        2      1      6      0      1
  SHMT2 WILD-TYPE     82     84     79     69     46
D883V5, multiclass
        clus
vv       SHMT2 MUTATED SHMT2 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             1              84
  CLUS_3             6              79
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SHMT2 MUTATED        2      2      2      4
  SHMT2 WILD-TYPE     93     72    119     76
D883V6, multiclass
        clus
vv       SHMT2 MUTATED SHMT2 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SHMT2 MUTATED        2      4      1      2      0      1
  SHMT2 WILD-TYPE     50     60     71    102     40     58
D883V7, multiclass
        clus
vv       SHMT2 MUTATED SHMT2 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             4              60
  CLUS_3             1              71
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SHMT2 MUTATED        6      2      2
  SHMT2 WILD-TYPE    211     73     97
D883V8, multiclass
        clus
vv       SHMT2 MUTATED SHMT2 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SHMT2 MUTATED        2      2      1
  SHMT2 WILD-TYPE    119    106     71
D883V9, multiclass
        clus
vv       SHMT2 MUTATED SHMT2 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             2             106
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SHMT2 MUTATED        1      1      1      1      1
  SHMT2 WILD-TYPE     87     65     44     54     46
D883V10, multiclass
        clus
vv       SHMT2 MUTATED SHMT2 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(884) Variable = TBC1D22B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D22B MUTATED        1      6      0      0
  TBC1D22B WILD-TYPE    203    131     47      3
D884V1, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                1                203
  CLUS_2                6                131
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D22B MUTATED        0      6      0      0      0
  TBC1D22B WILD-TYPE     39     90     44     88     80
D884V2, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                6                 90
  CLUS_3                0                 44
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D22B MUTATED        0      0      4      0      2
  TBC1D22B WILD-TYPE     26     79     69     82     56
D884V3, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                0                 79
  CLUS_3                4                 69
  CLUS_4                0                 82
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D22B MUTATED        1      5      0      0
  TBC1D22B WILD-TYPE    126     46     71     69
D884V4, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                1                126
  CLUS_2                5                 46
  CLUS_3                0                 71
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D22B MUTATED        0      1      4      1      1
  TBC1D22B WILD-TYPE     84     84     81     68     46
D884V5, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                4                 81
  CLUS_4                1                 68
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D22B MUTATED        1      1      0      5
  TBC1D22B WILD-TYPE     94     73    121     75
D884V6, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                1                 73
  CLUS_3                0                121
  CLUS_4                5                 75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TBC1D22B MUTATED        4      1      1      1      0      0
  TBC1D22B WILD-TYPE     48     63     71    103     40     59
D884V7, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                1                 63
  CLUS_3                1                 71
  CLUS_4                1                103
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TBC1D22B MUTATED        6      1      0
  TBC1D22B WILD-TYPE    211     74     99
D884V8, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                6                211
  CLUS_2                1                 74
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TBC1D22B MUTATED        4      1      0
  TBC1D22B WILD-TYPE    117    107     72
D884V9, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                4                117
  CLUS_2                1                107
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D22B MUTATED        1      1      0      0      3
  TBC1D22B WILD-TYPE     87     65     45     55     44
D884V10, multiclass
        clus
vv       TBC1D22B MUTATED TBC1D22B WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                1                 65
  CLUS_3                0                 45
  CLUS_4                0                 55
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(885) Variable = TACC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TACC2 MUTATED        7     22      3      0
  TACC2 WILD-TYPE    197    115     44      3
D885V1, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1             7             197
  CLUS_2            22             115
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TACC2 MUTATED        1     11      4      6      2
  TACC2 WILD-TYPE     38     85     40     82     78
D885V2, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2            11              85
  CLUS_3             4              40
  CLUS_4             6              82
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TACC2 MUTATED        2     12      5      1      7
  TACC2 WILD-TYPE     24     67     68     81     51
D885V3, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2            12              67
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             7              51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TACC2 MUTATED        9     10      5      3
  TACC2 WILD-TYPE    118     41     66     66
D885V4, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1             9             118
  CLUS_2            10              41
  CLUS_3             5              66
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TACC2 MUTATED        5      4     12      3      5
  TACC2 WILD-TYPE     79     81     73     66     42
D885V5, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1             5              79
  CLUS_2             4              81
  CLUS_3            12              73
  CLUS_4             3              66
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TACC2 MUTATED        7      4      6     12
  TACC2 WILD-TYPE     88     70    115     68
D885V6, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             4              70
  CLUS_3             6             115
  CLUS_4            12              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TACC2 MUTATED        7     12      4      4      2      4
  TACC2 WILD-TYPE     45     52     68    100     38     55
D885V7, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1             7              45
  CLUS_2            12              52
  CLUS_3             4              68
  CLUS_4             4             100
  CLUS_5             2              38
  CLUS_6             4              55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TACC2 MUTATED       23      4      6
  TACC2 WILD-TYPE    194     71     93
D885V8, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1            23             194
  CLUS_2             4              71
  CLUS_3             6              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TACC2 MUTATED        9      1     11
  TACC2 WILD-TYPE    112    107     61
D885V9, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1             9             112
  CLUS_2             1             107
  CLUS_3            11              61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TACC2 MUTATED        5      2      7      0      7
  TACC2 WILD-TYPE     83     64     38     55     40
D885V10, multiclass
        clus
vv       TACC2 MUTATED TACC2 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             2              64
  CLUS_3             7              38
  CLUS_4             0              55
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(886) Variable = EXOC3L2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOC3L2 MUTATED        0      3      0      0
  EXOC3L2 WILD-TYPE    204    134     47      3
D886V1, multiclass
        clus
vv       EXOC3L2 MUTATED EXOC3L2 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               3               134
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOC3L2 MUTATED        1      1      0      0      0
  EXOC3L2 WILD-TYPE     38     95     44     88     80
D886V2, multiclass
[1] "Remove cluster labels:" "EXOC3L2 MUTATED"       
clus
  EXOC3L2 MUTATED EXOC3L2 WILD-TYPE 
                2               345 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-6452        TCGA-BR-6453 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7703        TCGA-BR-7704        TCGA-BR-7707        TCGA-BR-7715 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7716        TCGA-BR-7717        TCGA-BR-7722        TCGA-BR-7723 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957        TCGA-BR-7958 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059        TCGA-BR-8060 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8077        TCGA-BR-8078        TCGA-BR-8080        TCGA-BR-8081 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8284        TCGA-BR-8285        TCGA-BR-8286        TCGA-BR-8289 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8360 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8361        TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8366        TCGA-BR-8367        TCGA-BR-8368        TCGA-BR-8369 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8370        TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8373 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8380        TCGA-BR-8381        TCGA-BR-8382        TCGA-BR-8384 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8483        TCGA-BR-8484        TCGA-BR-8485        TCGA-BR-8486 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8589        TCGA-BR-8590 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676        TCGA-BR-8677 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8682        TCGA-BR-8683 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8686        TCGA-BR-8687        TCGA-BR-8690        TCGA-BR-A44T 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A44U        TCGA-BR-A452        TCGA-BR-A453        TCGA-BR-A4CQ 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU        TCGA-BR-A4IV 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1        TCGA-BR-A4J2 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4J4        TCGA-BR-A4J5        TCGA-BR-A4J6        TCGA-BR-A4J7 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4PE        TCGA-BR-A4PF 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4QI        TCGA-BR-A4QL        TCGA-BR-A4QM        TCGA-CD-5798 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801        TCGA-CD-5802 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-5803        TCGA-CD-5804        TCGA-CD-5813        TCGA-CD-8524 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8525        TCGA-CD-8526        TCGA-CD-8527        TCGA-CD-8528 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531        TCGA-CD-8532 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8533        TCGA-CD-8534        TCGA-CD-8535        TCGA-CD-8536 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489        TCGA-CD-A48A 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-A4MJ        TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-5716 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-8573        TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-8578        TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A4YV        TCGA-D7-A4YX        TCGA-D7-A4YY        TCGA-D7-A4Z0 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A6ET        TCGA-D7-A6EV        TCGA-D7-A6EX        TCGA-D7-A6EY 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A6EZ        TCGA-D7-A6F0        TCGA-D7-A6F2        TCGA-D7-A747 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A748        TCGA-D7-A74A        TCGA-D7-A74B        TCGA-EQ-5647 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-EQ-8122        TCGA-EQ-A4SO        TCGA-F1-6177        TCGA-F1-6874 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-F1-6875        TCGA-F1-A448        TCGA-F1-A72C        TCGA-FP-7735 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-FP-7829        TCGA-FP-7916        TCGA-FP-7998        TCGA-FP-8099 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-FP-8209        TCGA-FP-8210        TCGA-FP-8211        TCGA-FP-8631 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-FP-A4BE        TCGA-FP-A4BF        TCGA-FP-A8CX        TCGA-FP-A9TM 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HF-7131        TCGA-HF-7132        TCGA-HF-7133        TCGA-HF-7134 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HF-7136        TCGA-HF-A5NB        TCGA-HJ-7597        TCGA-HU-8238 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-8243        TCGA-HU-8244        TCGA-HU-8249        TCGA-HU-8602 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-8604        TCGA-HU-8608        TCGA-HU-8610        TCGA-HU-A4G2 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4G3        TCGA-HU-A4G6        TCGA-HU-A4G8        TCGA-HU-A4G9 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4GC        TCGA-HU-A4GD        TCGA-HU-A4GF        TCGA-HU-A4GH 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4GJ        TCGA-HU-A4GN        TCGA-HU-A4GP        TCGA-HU-A4GQ 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4GT        TCGA-HU-A4GU        TCGA-HU-A4GX        TCGA-HU-A4GY 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4H0        TCGA-HU-A4H2        TCGA-HU-A4H3        TCGA-HU-A4H4 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4HB        TCGA-HU-A4HD 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-A6RI        TCGA-IN-A6RJ        TCGA-IN-A6RL        TCGA-IN-A6RN 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-A6RO        TCGA-IN-A6RP        TCGA-IN-A6RR        TCGA-IN-A6RS 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-A7NR        TCGA-IN-A7NT        TCGA-IN-A7NU        TCGA-IN-AB1V 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-AB1X        TCGA-IP-7968        TCGA-KB-A6F5        TCGA-KB-A6F7 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-KB-A93G        TCGA-KB-A93J        TCGA-MX-A5UG        TCGA-MX-A5UJ 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-MX-A663        TCGA-MX-A666        TCGA-R5-A7O7        TCGA-R5-A7ZE 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-R5-A7ZF        TCGA-R5-A7ZI        TCGA-R5-A7ZR        TCGA-R5-A804 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-R5-A805        TCGA-RD-A7BS        TCGA-RD-A7BT        TCGA-RD-A7BW 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-RD-A7C1        TCGA-RD-A8MV        TCGA-RD-A8MW        TCGA-RD-A8N0 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-RD-A8N1        TCGA-RD-A8N2        TCGA-RD-A8N4        TCGA-RD-A8N5 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-RD-A8N6        TCGA-RD-A8N9        TCGA-SW-A7EA        TCGA-SW-A7EB 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A8DL        TCGA-VQ-A8DT        TCGA-VQ-A8DU        TCGA-VQ-A8DV 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A8DZ        TCGA-VQ-A8E2        TCGA-VQ-A8E7        TCGA-VQ-A8P2 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A8P3        TCGA-VQ-A8PE        TCGA-VQ-A8PK        TCGA-VQ-A8PM 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A8PQ        TCGA-VQ-A91Q        TCGA-VQ-A91U        TCGA-VQ-A91V 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A92D        TCGA-VQ-A94T        TCGA-VQ-AA64        TCGA-VQ-AA68 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-AA69        TCGA-VQ-AA6A        TCGA-VQ-AA6B        TCGA-VQ-AA6F 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-AA6G        TCGA-VQ-AA6I        TCGA-VQ-AA6J        TCGA-VQ-AA6K 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-ZA-A8F6 
"EXOC3L2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOC3L2 MUTATED        0      1      0      0      1
  EXOC3L2 WILD-TYPE     26     78     73     82     57
D886V3, multiclass
[1] "Remove cluster labels:" "EXOC3L2 MUTATED"       
clus
  EXOC3L2 MUTATED EXOC3L2 WILD-TYPE 
                2               316 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-4183        TCGA-BR-4184 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-4187        TCGA-BR-4188        TCGA-BR-4191        TCGA-BR-4201 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-4253        TCGA-BR-4255        TCGA-BR-4256        TCGA-BR-4257 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-4267        TCGA-BR-4279        TCGA-BR-4292        TCGA-BR-4294 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-4357        TCGA-BR-4361        TCGA-BR-4362        TCGA-BR-4363 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-4366        TCGA-BR-4368        TCGA-BR-4369        TCGA-BR-4370 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-4371        TCGA-BR-6452        TCGA-BR-6453        TCGA-BR-6454 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457        TCGA-BR-6458 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6564        TCGA-BR-6565        TCGA-BR-6566        TCGA-BR-6705 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6706        TCGA-BR-6707        TCGA-BR-6709        TCGA-BR-6710 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803        TCGA-BR-6852 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703        TCGA-BR-7704 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7715        TCGA-BR-7716        TCGA-BR-7717        TCGA-BR-7722 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8060        TCGA-BR-8080        TCGA-BR-8081        TCGA-BR-8284 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8285        TCGA-BR-8286        TCGA-BR-8289        TCGA-BR-8291 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8361 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8366 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8367        TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8370 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8380        TCGA-BR-8381 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8484 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8588        TCGA-BR-8589 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8682 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687        TCGA-BR-8690 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A44T        TCGA-BR-A44U        TCGA-BR-A452        TCGA-BR-A453 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4J2        TCGA-BR-A4J4        TCGA-BR-A4J5        TCGA-BR-A4J6 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4PE 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4PF        TCGA-BR-A4QI        TCGA-BR-A4QL        TCGA-BR-A4QM 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5804        TCGA-CD-5813 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8524        TCGA-CD-8525        TCGA-CD-8526        TCGA-CD-8527 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8528        TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8532        TCGA-CD-8533        TCGA-CD-8534        TCGA-CD-8535 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-A48A        TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-A4MI        TCGA-CD-A4MJ        TCGA-CG-4300        TCGA-CG-4301 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-4304        TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4438        TCGA-CG-4442        TCGA-CG-4443 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469        TCGA-CG-4474 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-4475        TCGA-CG-4476        TCGA-CG-4477        TCGA-CG-5716 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6525        TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8573        TCGA-D7-8574 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-8575        TCGA-D7-8578        TCGA-D7-A4YT        TCGA-D7-A4YU 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A4YV        TCGA-D7-A4YX        TCGA-D7-A4YY        TCGA-D7-A4Z0 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A6EV        TCGA-D7-A6EX        TCGA-D7-A6EY        TCGA-D7-A6EZ 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A6F0        TCGA-D7-A748        TCGA-EQ-8122        TCGA-EQ-A4SO 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-F1-A72C        TCGA-FP-7916        TCGA-FP-7998        TCGA-HF-7131 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HF-7132        TCGA-HF-7133        TCGA-HF-7134        TCGA-HF-7136 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HF-A5NB        TCGA-HJ-7597        TCGA-HU-8602        TCGA-HU-8608 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-8610        TCGA-HU-A4GF        TCGA-HU-A4GQ        TCGA-HU-A4GT 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4GU        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4H3        TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4HD 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-A6RI        TCGA-IN-A6RL        TCGA-IN-A6RN        TCGA-IN-A6RO 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-A6RR        TCGA-IN-A6RS        TCGA-IN-A7NR        TCGA-IN-A7NT 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-A7NU        TCGA-IN-AB1V        TCGA-IN-AB1X        TCGA-IP-7968 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-KB-A6F5        TCGA-KB-A93G        TCGA-MX-A5UG        TCGA-RD-A7BS 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-RD-A7BT        TCGA-RD-A7BW        TCGA-RD-A7C1        TCGA-RD-A8MV 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-RD-A8MW        TCGA-RD-A8N0        TCGA-RD-A8N1        TCGA-SW-A7EA 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-SW-A7EB        TCGA-VQ-A8DL        TCGA-VQ-A8DT        TCGA-VQ-A8DU 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A8E2        TCGA-VQ-A8E7        TCGA-VQ-A8P2        TCGA-VQ-A8P3 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A8PE        TCGA-VQ-A8PK        TCGA-VQ-A8PM        TCGA-VQ-A8PQ 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A91U        TCGA-VQ-A91V        TCGA-VQ-A92D        TCGA-VQ-AA64 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-AA69        TCGA-VQ-AA6A        TCGA-VQ-AA6B        TCGA-VQ-AA6F 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-AA6G        TCGA-VQ-AA6I        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOC3L2 MUTATED        0      2      0      0
  EXOC3L2 WILD-TYPE    127     49     71     69
D886V4, multiclass
[1] "Remove cluster labels:" "EXOC3L2 MUTATED"       
clus
  EXOC3L2 MUTATED EXOC3L2 WILD-TYPE 
                2               316 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-4183        TCGA-BR-4184 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-4187        TCGA-BR-4188        TCGA-BR-4191        TCGA-BR-4201 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-4253        TCGA-BR-4255        TCGA-BR-4256        TCGA-BR-4257 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-4267        TCGA-BR-4279        TCGA-BR-4292        TCGA-BR-4294 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-4357        TCGA-BR-4361        TCGA-BR-4362        TCGA-BR-4363 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-4366        TCGA-BR-4368        TCGA-BR-4369        TCGA-BR-4370 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-4371        TCGA-BR-6452        TCGA-BR-6453        TCGA-BR-6454 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457        TCGA-BR-6458 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6564        TCGA-BR-6565        TCGA-BR-6566        TCGA-BR-6705 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6706        TCGA-BR-6707        TCGA-BR-6709        TCGA-BR-6710 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6801        TCGA-BR-6802        TCGA-BR-6803        TCGA-BR-6852 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7196        TCGA-BR-7197        TCGA-BR-7703        TCGA-BR-7704 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7715        TCGA-BR-7716        TCGA-BR-7717        TCGA-BR-7722 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901        TCGA-BR-7957 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058        TCGA-BR-8059 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8060        TCGA-BR-8080        TCGA-BR-8081        TCGA-BR-8284 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8285        TCGA-BR-8286        TCGA-BR-8289        TCGA-BR-8291 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8360        TCGA-BR-8361 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365        TCGA-BR-8366 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8367        TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8370 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8371        TCGA-BR-8372        TCGA-BR-8380        TCGA-BR-8381 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8484 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8485        TCGA-BR-8486        TCGA-BR-8588        TCGA-BR-8589 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8590        TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8677        TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8682 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8683        TCGA-BR-8686        TCGA-BR-8687        TCGA-BR-8690 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A44T        TCGA-BR-A44U        TCGA-BR-A452        TCGA-BR-A453 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS        TCGA-BR-A4IU 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ        TCGA-BR-A4J1 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4J2        TCGA-BR-A4J4        TCGA-BR-A4J5        TCGA-BR-A4J6 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4J7        TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4PE 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4PF        TCGA-BR-A4QI        TCGA-BR-A4QL        TCGA-BR-A4QM 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800        TCGA-CD-5801 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5804        TCGA-CD-5813 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8524        TCGA-CD-8525        TCGA-CD-8526        TCGA-CD-8527 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8528        TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8532        TCGA-CD-8533        TCGA-CD-8534        TCGA-CD-8535 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-A48A        TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-A4MI        TCGA-CD-A4MJ        TCGA-CG-4300        TCGA-CG-4301 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-4304        TCGA-CG-4305        TCGA-CG-4306        TCGA-CG-4436 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4438        TCGA-CG-4442        TCGA-CG-4443 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-4444        TCGA-CG-4449        TCGA-CG-4455        TCGA-CG-4460 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-4465        TCGA-CG-4466        TCGA-CG-4469        TCGA-CG-4474 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-4475        TCGA-CG-4476        TCGA-CG-4477        TCGA-CG-5716 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5723        TCGA-CG-5724        TCGA-CG-5725 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728        TCGA-CG-5730 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734        TCGA-D7-5577 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518        TCGA-D7-6519 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522        TCGA-D7-6524 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6525        TCGA-D7-6527        TCGA-D7-6528        TCGA-D7-6815 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6817        TCGA-D7-6818        TCGA-D7-6820        TCGA-D7-6822 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-8570        TCGA-D7-8572        TCGA-D7-8573        TCGA-D7-8574 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-8575        TCGA-D7-8578        TCGA-D7-A4YT        TCGA-D7-A4YU 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A4YV        TCGA-D7-A4YX        TCGA-D7-A4YY        TCGA-D7-A4Z0 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A6EV        TCGA-D7-A6EX        TCGA-D7-A6EY        TCGA-D7-A6EZ 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A6F0        TCGA-D7-A748        TCGA-EQ-8122        TCGA-EQ-A4SO 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-F1-6177        TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-F1-A72C        TCGA-FP-7916        TCGA-FP-7998        TCGA-HF-7131 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HF-7132        TCGA-HF-7133        TCGA-HF-7134        TCGA-HF-7136 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HF-A5NB        TCGA-HJ-7597        TCGA-HU-8602        TCGA-HU-8608 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-8610        TCGA-HU-A4GF        TCGA-HU-A4GQ        TCGA-HU-A4GT 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4GU        TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4H3        TCGA-HU-A4H4        TCGA-HU-A4H5        TCGA-HU-A4HD 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-7806        TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-A6RI        TCGA-IN-A6RL        TCGA-IN-A6RN        TCGA-IN-A6RO 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-A6RR        TCGA-IN-A6RS        TCGA-IN-A7NR        TCGA-IN-A7NT 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-A7NU        TCGA-IN-AB1V        TCGA-IN-AB1X        TCGA-IP-7968 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-KB-A6F5        TCGA-KB-A93G        TCGA-MX-A5UG        TCGA-RD-A7BS 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-RD-A7BT        TCGA-RD-A7BW        TCGA-RD-A7C1        TCGA-RD-A8MV 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-RD-A8MW        TCGA-RD-A8N0        TCGA-RD-A8N1        TCGA-SW-A7EA 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-SW-A7EB        TCGA-VQ-A8DL        TCGA-VQ-A8DT        TCGA-VQ-A8DU 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A8E2        TCGA-VQ-A8E7        TCGA-VQ-A8P2        TCGA-VQ-A8P3 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A8PE        TCGA-VQ-A8PK        TCGA-VQ-A8PM        TCGA-VQ-A8PQ 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A91U        TCGA-VQ-A91V        TCGA-VQ-A92D        TCGA-VQ-AA64 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-AA69        TCGA-VQ-AA6A        TCGA-VQ-AA6B        TCGA-VQ-AA6F 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-AA6G        TCGA-VQ-AA6I        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOC3L2 MUTATED        0      0      1      1      1
  EXOC3L2 WILD-TYPE     84     85     84     68     46
D886V5, multiclass
        clus
vv       EXOC3L2 MUTATED EXOC3L2 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               1                84
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOC3L2 MUTATED        1      0      0      2
  EXOC3L2 WILD-TYPE     94     74    121     78
D886V6, multiclass
        clus
vv       EXOC3L2 MUTATED EXOC3L2 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               0                74
  CLUS_3               0               121
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EXOC3L2 MUTATED        3      0      0      0      0      0
  EXOC3L2 WILD-TYPE     49     64     72    104     40     59
D886V7, multiclass
        clus
vv       EXOC3L2 MUTATED EXOC3L2 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               0                64
  CLUS_3               0                72
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EXOC3L2 MUTATED        3      0      0
  EXOC3L2 WILD-TYPE    214     75     99
D886V8, multiclass
        clus
vv       EXOC3L2 MUTATED EXOC3L2 WILD-TYPE
  CLUS_1               3               214
  CLUS_2               0                75
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EXOC3L2 MUTATED        2      0      0
  EXOC3L2 WILD-TYPE    119    108     72
D886V9, multiclass
[1] "Remove cluster labels:" "EXOC3L2 MUTATED"       
clus
  EXOC3L2 MUTATED EXOC3L2 WILD-TYPE 
                2               299 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-6452        TCGA-BR-6453 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7703        TCGA-BR-7704        TCGA-BR-7707        TCGA-BR-7715 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7717        TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7957        TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8059        TCGA-BR-8060        TCGA-BR-8077        TCGA-BR-8078 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8360 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8361        TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8370        TCGA-BR-8371 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8372        TCGA-BR-8373        TCGA-BR-8380        TCGA-BR-8381 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8485 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8486        TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8590 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676        TCGA-BR-8677 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8682        TCGA-BR-8683 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8687        TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A452 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A453        TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4IU        TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4J1        TCGA-BR-A4J5        TCGA-BR-A4J6        TCGA-BR-A4J7 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4QI        TCGA-BR-A4QL 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5804 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525        TCGA-CD-8526 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8527        TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8532        TCGA-CD-8533        TCGA-CD-8534        TCGA-CD-8535 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-4449        TCGA-CG-5716 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576        TCGA-D7-8578 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU        TCGA-D7-A4YV 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-D7-A6ET        TCGA-D7-A6EV 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A6EX        TCGA-D7-A6EY        TCGA-D7-A6EZ        TCGA-D7-A6F0 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A6F2        TCGA-D7-A747        TCGA-D7-A748        TCGA-D7-A74A 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A74B        TCGA-EQ-5647        TCGA-EQ-8122        TCGA-F1-6177 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7735 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-FP-7829        TCGA-FP-7998        TCGA-FP-8099        TCGA-FP-8209 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-FP-8210        TCGA-FP-8211        TCGA-FP-8631        TCGA-FP-A4BE 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-FP-A9TM        TCGA-HF-7131        TCGA-HF-7132        TCGA-HF-7134 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HF-7136        TCGA-HU-8238        TCGA-HU-8243        TCGA-HU-8602 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-8604        TCGA-HU-8608        TCGA-HU-A4G3        TCGA-HU-A4G8 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4GC        TCGA-HU-A4GD        TCGA-HU-A4GF        TCGA-HU-A4GH 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4GJ        TCGA-HU-A4GN        TCGA-HU-A4GQ        TCGA-HU-A4GT 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2        TCGA-HU-A4H4 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4HB        TCGA-IN-7806 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663        TCGA-IN-A6RI 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-A6RJ        TCGA-IN-A6RL        TCGA-IN-A6RN        TCGA-IN-A6RP 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-A7NR        TCGA-IN-A7NT        TCGA-IN-A7NU        TCGA-IN-AB1V 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-AB1X        TCGA-IP-7968        TCGA-KB-A6F5        TCGA-KB-A6F7 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-KB-A93J        TCGA-MX-A5UG        TCGA-MX-A5UJ        TCGA-MX-A663 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-MX-A666        TCGA-R5-A7O7        TCGA-R5-A7ZE        TCGA-R5-A7ZF 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-R5-A7ZI        TCGA-R5-A7ZR        TCGA-R5-A804        TCGA-R5-A805 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-RD-A7BS        TCGA-RD-A7BW        TCGA-RD-A7C1        TCGA-RD-A8MV 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-RD-A8MW        TCGA-RD-A8N0        TCGA-RD-A8N1        TCGA-RD-A8N5 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-RD-A8N6        TCGA-RD-A8N9        TCGA-SW-A7EA        TCGA-SW-A7EB 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A8DL        TCGA-VQ-A8DU        TCGA-VQ-A8DV        TCGA-VQ-A8E2 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A8E7        TCGA-VQ-A8P2        TCGA-VQ-A8P3        TCGA-VQ-A8PE 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A8PK        TCGA-VQ-A8PM        TCGA-VQ-A8PQ        TCGA-VQ-A91Q 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A91U        TCGA-VQ-A91V        TCGA-VQ-A92D        TCGA-VQ-A94T 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-AA64        TCGA-VQ-AA68        TCGA-VQ-AA69        TCGA-VQ-AA6A 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-AA6B        TCGA-VQ-AA6F        TCGA-VQ-AA6G        TCGA-VQ-AA6I 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-AA6J        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOC3L2 MUTATED        1      0      0      0      1
  EXOC3L2 WILD-TYPE     87     66     45     55     46
D886V10, multiclass
[1] "Remove cluster labels:" "EXOC3L2 MUTATED"       
clus
  EXOC3L2 MUTATED EXOC3L2 WILD-TYPE 
                2               299 
       TCGA-B7-5816        TCGA-B7-5818        TCGA-B7-A5TI        TCGA-B7-A5TJ 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-B7-A5TK        TCGA-B7-A5TN        TCGA-BR-6452        TCGA-BR-6453 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6454        TCGA-BR-6455        TCGA-BR-6456        TCGA-BR-6457 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6458        TCGA-BR-6563        TCGA-BR-6564        TCGA-BR-6565 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6566        TCGA-BR-6705        TCGA-BR-6706        TCGA-BR-6707 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6709        TCGA-BR-6710        TCGA-BR-6801        TCGA-BR-6802 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-6803        TCGA-BR-6852        TCGA-BR-7196        TCGA-BR-7197 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7703        TCGA-BR-7704        TCGA-BR-7707        TCGA-BR-7715 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7717        TCGA-BR-7723        TCGA-BR-7851        TCGA-BR-7901 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-7957        TCGA-BR-7958        TCGA-BR-7959        TCGA-BR-8058 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8059        TCGA-BR-8060        TCGA-BR-8077        TCGA-BR-8078 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8080        TCGA-BR-8284        TCGA-BR-8286        TCGA-BR-8289 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8291        TCGA-BR-8295        TCGA-BR-8297        TCGA-BR-8360 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8361        TCGA-BR-8363        TCGA-BR-8364        TCGA-BR-8365 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8368        TCGA-BR-8369        TCGA-BR-8370        TCGA-BR-8371 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8372        TCGA-BR-8373        TCGA-BR-8380        TCGA-BR-8381 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8382        TCGA-BR-8384        TCGA-BR-8483        TCGA-BR-8485 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8486        TCGA-BR-8487        TCGA-BR-8588        TCGA-BR-8590 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8591        TCGA-BR-8592        TCGA-BR-8676        TCGA-BR-8677 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8678        TCGA-BR-8679        TCGA-BR-8682        TCGA-BR-8683 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-8687        TCGA-BR-8690        TCGA-BR-A44T        TCGA-BR-A452 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A453        TCGA-BR-A4CQ        TCGA-BR-A4CR        TCGA-BR-A4CS 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4IU        TCGA-BR-A4IV        TCGA-BR-A4IY        TCGA-BR-A4IZ 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4J1        TCGA-BR-A4J5        TCGA-BR-A4J6        TCGA-BR-A4J7 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4J8        TCGA-BR-A4PD        TCGA-BR-A4QI        TCGA-BR-A4QL 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-BR-A4QM        TCGA-CD-5798        TCGA-CD-5799        TCGA-CD-5800 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-5801        TCGA-CD-5802        TCGA-CD-5803        TCGA-CD-5804 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-5813        TCGA-CD-8524        TCGA-CD-8525        TCGA-CD-8526 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8527        TCGA-CD-8529        TCGA-CD-8530        TCGA-CD-8531 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8532        TCGA-CD-8533        TCGA-CD-8534        TCGA-CD-8535 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-8536        TCGA-CD-A486        TCGA-CD-A487        TCGA-CD-A489 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CD-A48C        TCGA-CD-A4MG        TCGA-CD-A4MH        TCGA-CD-A4MI 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-4437        TCGA-CG-4441        TCGA-CG-4449        TCGA-CG-5716 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5717        TCGA-CG-5718        TCGA-CG-5719        TCGA-CG-5720 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5721        TCGA-CG-5722        TCGA-CG-5723        TCGA-CG-5724 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5725        TCGA-CG-5726        TCGA-CG-5727        TCGA-CG-5728 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-CG-5730        TCGA-CG-5732        TCGA-CG-5733        TCGA-CG-5734 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-5577        TCGA-D7-5578        TCGA-D7-5579        TCGA-D7-6518 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6519        TCGA-D7-6520        TCGA-D7-6521        TCGA-D7-6522 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6524        TCGA-D7-6525        TCGA-D7-6526        TCGA-D7-6527 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6528        TCGA-D7-6815        TCGA-D7-6817        TCGA-D7-6818 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-6820        TCGA-D7-6822        TCGA-D7-8570        TCGA-D7-8572 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-8574        TCGA-D7-8575        TCGA-D7-8576        TCGA-D7-8578 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-8579        TCGA-D7-A4YT        TCGA-D7-A4YU        TCGA-D7-A4YV 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A4YY        TCGA-D7-A4Z0        TCGA-D7-A6ET        TCGA-D7-A6EV 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A6EX        TCGA-D7-A6EY        TCGA-D7-A6EZ        TCGA-D7-A6F0 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A6F2        TCGA-D7-A747        TCGA-D7-A748        TCGA-D7-A74A 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-D7-A74B        TCGA-EQ-5647        TCGA-EQ-8122        TCGA-F1-6177 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-F1-6874        TCGA-F1-6875        TCGA-F1-A448        TCGA-FP-7735 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-FP-7829        TCGA-FP-7998        TCGA-FP-8099        TCGA-FP-8209 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-FP-8210        TCGA-FP-8211        TCGA-FP-8631        TCGA-FP-A4BE 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-FP-A9TM        TCGA-HF-7131        TCGA-HF-7132        TCGA-HF-7134 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HF-7136        TCGA-HU-8238        TCGA-HU-8243        TCGA-HU-8602 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-8604        TCGA-HU-8608        TCGA-HU-A4G3        TCGA-HU-A4G8 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4GC        TCGA-HU-A4GD        TCGA-HU-A4GF        TCGA-HU-A4GH 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4GJ        TCGA-HU-A4GN        TCGA-HU-A4GQ        TCGA-HU-A4GT 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4GX        TCGA-HU-A4GY        TCGA-HU-A4H2        TCGA-HU-A4H4 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-HU-A4H5        TCGA-HU-A4H6        TCGA-HU-A4HB        TCGA-IN-7806 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-7808        TCGA-IN-8462        TCGA-IN-8663        TCGA-IN-A6RI 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-A6RJ        TCGA-IN-A6RL        TCGA-IN-A6RN        TCGA-IN-A6RP 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-A7NR        TCGA-IN-A7NT        TCGA-IN-A7NU        TCGA-IN-AB1V 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-IN-AB1X        TCGA-IP-7968        TCGA-KB-A6F5        TCGA-KB-A6F7 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-KB-A93J        TCGA-MX-A5UG        TCGA-MX-A5UJ        TCGA-MX-A663 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-MX-A666        TCGA-R5-A7O7        TCGA-R5-A7ZE        TCGA-R5-A7ZF 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-R5-A7ZI        TCGA-R5-A7ZR        TCGA-R5-A804        TCGA-R5-A805 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-RD-A7BS        TCGA-RD-A7BW        TCGA-RD-A7C1        TCGA-RD-A8MV 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-RD-A8MW        TCGA-RD-A8N0        TCGA-RD-A8N1        TCGA-RD-A8N5 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-RD-A8N6        TCGA-RD-A8N9        TCGA-SW-A7EA        TCGA-SW-A7EB 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A8DL        TCGA-VQ-A8DU        TCGA-VQ-A8DV        TCGA-VQ-A8E2 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A8E7        TCGA-VQ-A8P2        TCGA-VQ-A8P3        TCGA-VQ-A8PE 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A8PK        TCGA-VQ-A8PM        TCGA-VQ-A8PQ        TCGA-VQ-A91Q 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-A91U        TCGA-VQ-A91V        TCGA-VQ-A92D        TCGA-VQ-A94T 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-AA64        TCGA-VQ-AA68        TCGA-VQ-AA69        TCGA-VQ-AA6A 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-AA6B        TCGA-VQ-AA6F        TCGA-VQ-AA6G        TCGA-VQ-AA6I 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 
       TCGA-VQ-AA6J        TCGA-VQ-AA6K        TCGA-ZA-A8F6 
"EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" "EXOC3L2 WILD-TYPE" 

Clustering(887) Variable = BAG4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAG4 MUTATED        0      5      0      0
  BAG4 WILD-TYPE    204    132     47      3
D887V1, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            5            132
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAG4 MUTATED        0      3      0      0      0
  BAG4 WILD-TYPE     39     93     44     88     80
D887V2, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAG4 MUTATED        0      1      2      0      1
  BAG4 WILD-TYPE     26     78     71     82     57
D887V3, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAG4 MUTATED        1      2      0      1
  BAG4 WILD-TYPE    126     49     71     68
D887V4, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            2             49
  CLUS_3            0             71
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAG4 MUTATED        0      2      1      1      1
  BAG4 WILD-TYPE     84     83     84     68     46
D887V5, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            1             84
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BAG4 MUTATED        3      1      0      1
  BAG4 WILD-TYPE     92     73    121     79
D887V6, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            1             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BAG4 MUTATED        1      2      0      0      2      0
  BAG4 WILD-TYPE     51     62     72    104     38     59
D887V7, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            2             62
  CLUS_3            0             72
  CLUS_4            0            104
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAG4 MUTATED        3      0      2
  BAG4 WILD-TYPE    214     75     97
D887V8, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            3            214
  CLUS_2            0             75
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BAG4 MUTATED        2      1      0
  BAG4 WILD-TYPE    119    107     72
D887V9, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            1            107
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BAG4 MUTATED        3      0      0      0      0
  BAG4 WILD-TYPE     85     66     45     55     47
D887V10, multiclass
        clus
vv       BAG4 MUTATED BAG4 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(888) Variable = SLC26A8 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A8 MUTATED        4      6      0      0
  SLC26A8 WILD-TYPE    200    131     47      3
D888V1, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               4               200
  CLUS_2               6               131
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC26A8 MUTATED        1      6      1      0      1
  SLC26A8 WILD-TYPE     38     90     43     88     79
D888V2, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               6                90
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC26A8 MUTATED        1      3      2      1      2
  SLC26A8 WILD-TYPE     25     76     71     81     56
D888V3, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                76
  CLUS_3               2                71
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A8 MUTATED        2      5      1      1
  SLC26A8 WILD-TYPE    125     46     70     68
D888V4, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               5                46
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC26A8 MUTATED        1      1      5      1      0
  SLC26A8 WILD-TYPE     83     84     80     68     47
D888V5, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               5                80
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC26A8 MUTATED        2      2      2      2
  SLC26A8 WILD-TYPE     93     72    119     78
D888V6, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               2                72
  CLUS_3               2               119
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC26A8 MUTATED        1      4      2      1      1      1
  SLC26A8 WILD-TYPE     51     60     70    103     39     58
D888V7, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               4                60
  CLUS_3               2                70
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A8 MUTATED        6      3      1
  SLC26A8 WILD-TYPE    211     72     98
D888V8, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               3                72
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC26A8 MUTATED        3      1      5
  SLC26A8 WILD-TYPE    118    107     67
D888V9, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               1               107
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC26A8 MUTATED        1      1      2      2      3
  SLC26A8 WILD-TYPE     87     65     43     53     44
D888V10, multiclass
        clus
vv       SLC26A8 MUTATED SLC26A8 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               2                53
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(889) Variable = MBOAT2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBOAT2 MUTATED        0      3      0      0
  MBOAT2 WILD-TYPE    204    134     47      3
D889V1, multiclass
        clus
vv       MBOAT2 MUTATED MBOAT2 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              3              134
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBOAT2 MUTATED        0      2      0      0      0
  MBOAT2 WILD-TYPE     39     94     44     88     80
D889V2, multiclass
[1] "Remove cluster labels:" "MBOAT2 MUTATED"        
clus
  MBOAT2 MUTATED MBOAT2 WILD-TYPE 
               2              345 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-6452       TCGA-BR-6453 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8060 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8078       TCGA-BR-8080       TCGA-BR-8081 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8285       TCGA-BR-8286       TCGA-BR-8289 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8589       TCGA-BR-8590 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-8690 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A44U       TCGA-BR-A452       TCGA-BR-A453 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A4J2       TCGA-BR-A4J4       TCGA-BR-A4J5       TCGA-BR-A4J6 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4PE 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A4PF       TCGA-BR-A4QI       TCGA-BR-A4QL       TCGA-BR-A4QM 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804       TCGA-CD-5813 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8527 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-8528       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534       TCGA-CD-8535 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-A48A       TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-A4MI       TCGA-CD-A4MJ       TCGA-CG-4437       TCGA-CG-4441 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8575 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-D7-A6ET       TCGA-D7-A6EV       TCGA-D7-A6EX 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-A6EY       TCGA-D7-A6EZ       TCGA-D7-A6F0       TCGA-D7-A6F2 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-A747       TCGA-D7-A748       TCGA-D7-A74A       TCGA-D7-A74B 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-F1-A72C 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-FP-8631       TCGA-FP-A4BE       TCGA-FP-A4BF       TCGA-FP-A8CX 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-FP-A9TM       TCGA-HF-7131       TCGA-HF-7133       TCGA-HF-7134 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HF-7136       TCGA-HF-A5NB       TCGA-HJ-7597       TCGA-HU-8238 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-8243       TCGA-HU-8244       TCGA-HU-8249       TCGA-HU-8602 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4G2 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-A4G3       TCGA-HU-A4G6       TCGA-HU-A4G8       TCGA-HU-A4G9 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-A4GC       TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-A4GJ       TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-A4GU       TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H0 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-A4H2       TCGA-HU-A4H3       TCGA-HU-A4H4       TCGA-HU-A4H5 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-A4H6       TCGA-HU-A4H8       TCGA-HU-A4HB       TCGA-HU-A4HD 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-IN-A6RI       TCGA-IN-A6RJ       TCGA-IN-A6RL       TCGA-IN-A6RN 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-IN-A6RO       TCGA-IN-A6RP       TCGA-IN-A6RR       TCGA-IN-A6RS 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-IN-A7NR       TCGA-IN-A7NT       TCGA-IN-A7NU       TCGA-IN-AB1V 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-IN-AB1X       TCGA-IP-7968       TCGA-KB-A6F5       TCGA-KB-A6F7 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-KB-A93G       TCGA-KB-A93J       TCGA-MX-A5UG       TCGA-MX-A5UJ 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-MX-A663       TCGA-MX-A666       TCGA-R5-A7O7       TCGA-R5-A7ZE 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-R5-A7ZF       TCGA-R5-A7ZI       TCGA-R5-A7ZR       TCGA-R5-A804 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-R5-A805       TCGA-RD-A7BS       TCGA-RD-A7BT       TCGA-RD-A7BW 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-RD-A7C1       TCGA-RD-A8MV       TCGA-RD-A8MW       TCGA-RD-A8N0 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-RD-A8N1       TCGA-RD-A8N2       TCGA-RD-A8N4       TCGA-RD-A8N5 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA       TCGA-SW-A7EB 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-A8DL       TCGA-VQ-A8DT       TCGA-VQ-A8DU       TCGA-VQ-A8DV 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-A8DZ       TCGA-VQ-A8E2       TCGA-VQ-A8E7       TCGA-VQ-A8P2 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-A8P3       TCGA-VQ-A8PE       TCGA-VQ-A8PK       TCGA-VQ-A8PM 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-A8PQ       TCGA-VQ-A91Q       TCGA-VQ-A91U       TCGA-VQ-A91V 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-A92D       TCGA-VQ-A94T       TCGA-VQ-AA64       TCGA-VQ-AA68 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-AA69       TCGA-VQ-AA6A       TCGA-VQ-AA6B       TCGA-VQ-AA6F 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-AA6G       TCGA-VQ-AA6I       TCGA-VQ-AA6J       TCGA-VQ-AA6K 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-ZA-A8F6 
"MBOAT2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBOAT2 MUTATED        0      1      1      0      1
  MBOAT2 WILD-TYPE     26     78     72     82     57
D889V3, multiclass
        clus
vv       MBOAT2 MUTATED MBOAT2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBOAT2 MUTATED        1      2      0      0
  MBOAT2 WILD-TYPE    126     49     71     69
D889V4, multiclass
        clus
vv       MBOAT2 MUTATED MBOAT2 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              0               71
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBOAT2 MUTATED        0      0      0      1      2
  MBOAT2 WILD-TYPE     84     85     85     68     45
D889V5, multiclass
        clus
vv       MBOAT2 MUTATED MBOAT2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              0               85
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MBOAT2 MUTATED        2      0      0      1
  MBOAT2 WILD-TYPE     93     74    121     79
D889V6, multiclass
        clus
vv       MBOAT2 MUTATED MBOAT2 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0               74
  CLUS_3              0              121
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MBOAT2 MUTATED        2      1      0      0      0      0
  MBOAT2 WILD-TYPE     50     63     72    104     40     59
D889V7, multiclass
        clus
vv       MBOAT2 MUTATED MBOAT2 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              1               63
  CLUS_3              0               72
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MBOAT2 MUTATED        3      0      0
  MBOAT2 WILD-TYPE    214     75     99
D889V8, multiclass
        clus
vv       MBOAT2 MUTATED MBOAT2 WILD-TYPE
  CLUS_1              3              214
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MBOAT2 MUTATED        2      0      0
  MBOAT2 WILD-TYPE    119    108     72
D889V9, multiclass
[1] "Remove cluster labels:" "MBOAT2 MUTATED"        
clus
  MBOAT2 MUTATED MBOAT2 WILD-TYPE 
               2              299 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-6452       TCGA-BR-6453 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8060       TCGA-BR-8077       TCGA-BR-8078 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8485 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8590 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J5       TCGA-BR-A4J6 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-A4MI       TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-D7-A6ET 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-A6EV       TCGA-D7-A6EX       TCGA-D7-A6EY       TCGA-D7-A6EZ 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-A6F0       TCGA-D7-A6F2       TCGA-D7-A747       TCGA-D7-A748 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-A74A       TCGA-D7-A74B       TCGA-EQ-5647       TCGA-EQ-8122 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7998       TCGA-FP-8099 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-FP-A4BE       TCGA-FP-A9TM       TCGA-HF-7131       TCGA-HF-7134 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HF-7136       TCGA-HU-8238       TCGA-HU-8243       TCGA-HU-8602 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-A4GC       TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-A4GJ       TCGA-HU-A4GN       TCGA-HU-A4GQ       TCGA-HU-A4GX 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H4       TCGA-HU-A4H5 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-A4H6       TCGA-HU-A4H8       TCGA-HU-A4HB       TCGA-IN-7806 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663       TCGA-IN-A6RI 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-IN-A6RJ       TCGA-IN-A6RL       TCGA-IN-A6RN       TCGA-IN-A6RP 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-IN-A7NR       TCGA-IN-A7NT       TCGA-IN-A7NU       TCGA-IN-AB1V 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-IN-AB1X       TCGA-IP-7968       TCGA-KB-A6F5       TCGA-KB-A6F7 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-KB-A93J       TCGA-MX-A5UG       TCGA-MX-A5UJ       TCGA-MX-A663 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-MX-A666       TCGA-R5-A7O7       TCGA-R5-A7ZE       TCGA-R5-A7ZF 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-R5-A7ZI       TCGA-R5-A7ZR       TCGA-R5-A804       TCGA-R5-A805 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-RD-A7BS       TCGA-RD-A7BW       TCGA-RD-A7C1       TCGA-RD-A8MV 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1       TCGA-RD-A8N5 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA       TCGA-SW-A7EB 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-A8DL       TCGA-VQ-A8DU       TCGA-VQ-A8DV       TCGA-VQ-A8E2 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-A8E7       TCGA-VQ-A8P2       TCGA-VQ-A8P3       TCGA-VQ-A8PE 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ       TCGA-VQ-A91Q 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D       TCGA-VQ-A94T 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-AA64       TCGA-VQ-AA68       TCGA-VQ-AA69       TCGA-VQ-AA6A 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-AA6B       TCGA-VQ-AA6F       TCGA-VQ-AA6G       TCGA-VQ-AA6I 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-AA6J       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MBOAT2 MUTATED        1      0      0      0      1
  MBOAT2 WILD-TYPE     87     66     45     55     46
D889V10, multiclass
[1] "Remove cluster labels:" "MBOAT2 MUTATED"        
clus
  MBOAT2 MUTATED MBOAT2 WILD-TYPE 
               2              299 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-6452       TCGA-BR-6453 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8060       TCGA-BR-8077       TCGA-BR-8078 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8485 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8590 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J5       TCGA-BR-A4J6 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CD-A4MI       TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-D7-A6ET 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-A6EV       TCGA-D7-A6EX       TCGA-D7-A6EY       TCGA-D7-A6EZ 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-A6F0       TCGA-D7-A6F2       TCGA-D7-A747       TCGA-D7-A748 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-D7-A74A       TCGA-D7-A74B       TCGA-EQ-5647       TCGA-EQ-8122 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7998       TCGA-FP-8099 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-FP-A4BE       TCGA-FP-A9TM       TCGA-HF-7131       TCGA-HF-7134 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HF-7136       TCGA-HU-8238       TCGA-HU-8243       TCGA-HU-8602 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-A4GC       TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-A4GJ       TCGA-HU-A4GN       TCGA-HU-A4GQ       TCGA-HU-A4GX 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H4       TCGA-HU-A4H5 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-HU-A4H6       TCGA-HU-A4H8       TCGA-HU-A4HB       TCGA-IN-7806 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663       TCGA-IN-A6RI 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-IN-A6RJ       TCGA-IN-A6RL       TCGA-IN-A6RN       TCGA-IN-A6RP 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-IN-A7NR       TCGA-IN-A7NT       TCGA-IN-A7NU       TCGA-IN-AB1V 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-IN-AB1X       TCGA-IP-7968       TCGA-KB-A6F5       TCGA-KB-A6F7 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-KB-A93J       TCGA-MX-A5UG       TCGA-MX-A5UJ       TCGA-MX-A663 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-MX-A666       TCGA-R5-A7O7       TCGA-R5-A7ZE       TCGA-R5-A7ZF 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-R5-A7ZI       TCGA-R5-A7ZR       TCGA-R5-A804       TCGA-R5-A805 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-RD-A7BS       TCGA-RD-A7BW       TCGA-RD-A7C1       TCGA-RD-A8MV 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1       TCGA-RD-A8N5 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA       TCGA-SW-A7EB 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-A8DL       TCGA-VQ-A8DU       TCGA-VQ-A8DV       TCGA-VQ-A8E2 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-A8E7       TCGA-VQ-A8P2       TCGA-VQ-A8P3       TCGA-VQ-A8PE 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ       TCGA-VQ-A91Q 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D       TCGA-VQ-A94T 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-AA64       TCGA-VQ-AA68       TCGA-VQ-AA69       TCGA-VQ-AA6A 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-AA6B       TCGA-VQ-AA6F       TCGA-VQ-AA6G       TCGA-VQ-AA6I 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 
      TCGA-VQ-AA6J       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" "MBOAT2 WILD-TYPE" 

Clustering(890) Variable = GIMAP7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP7 MUTATED        0      4      1      0
  GIMAP7 WILD-TYPE    204    133     46      3
D890V1, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              4              133
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIMAP7 MUTATED        0      5      0      0      0
  GIMAP7 WILD-TYPE     39     91     44     88     80
D890V2, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIMAP7 MUTATED        1      0      2      0      2
  GIMAP7 WILD-TYPE     25     79     71     82     56
D890V3, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               79
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP7 MUTATED        1      4      0      0
  GIMAP7 WILD-TYPE    126     47     71     69
D890V4, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              4               47
  CLUS_3              0               71
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIMAP7 MUTATED        0      0      2      1      2
  GIMAP7 WILD-TYPE     84     85     83     68     45
D890V5, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              2               83
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GIMAP7 MUTATED        2      0      0      3
  GIMAP7 WILD-TYPE     93     74    121     77
D890V6, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0               74
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GIMAP7 MUTATED        0      3      2      0      0      0
  GIMAP7 WILD-TYPE     52     61     70    104     40     59
D890V7, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              3               61
  CLUS_3              2               70
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIMAP7 MUTATED        5      0      0
  GIMAP7 WILD-TYPE    212     75     99
D890V8, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GIMAP7 MUTATED        2      0      3
  GIMAP7 WILD-TYPE    119    108     69
D890V9, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GIMAP7 MUTATED        1      0      3      0      1
  GIMAP7 WILD-TYPE     87     66     42     55     46
D890V10, multiclass
        clus
vv       GIMAP7 MUTATED GIMAP7 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(891) Variable = C2CD3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2CD3 MUTATED        8     13      2      0
  C2CD3 WILD-TYPE    196    124     45      3
D891V1, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             8             196
  CLUS_2            13             124
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C2CD3 MUTATED        5      9      1      1      2
  C2CD3 WILD-TYPE     34     87     43     87     78
D891V2, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             5              34
  CLUS_2             9              87
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C2CD3 MUTATED        2      7      4      4      3
  C2CD3 WILD-TYPE     24     72     69     78     55
D891V3, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             7              72
  CLUS_3             4              69
  CLUS_4             4              78
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2CD3 MUTATED        5      8      5      2
  C2CD3 WILD-TYPE    122     43     66     67
D891V4, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             8              43
  CLUS_3             5              66
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C2CD3 MUTATED        1      1     15      3      2
  C2CD3 WILD-TYPE     83     84     70     66     45
D891V5, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3            15              70
  CLUS_4             3              66
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C2CD3 MUTATED        4      3      7      8
  C2CD3 WILD-TYPE     91     71    114     72
D891V6, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             3              71
  CLUS_3             7             114
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C2CD3 MUTATED        7      5      5      2      3      1
  C2CD3 WILD-TYPE     45     59     67    102     37     58
D891V7, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             7              45
  CLUS_2             5              59
  CLUS_3             5              67
  CLUS_4             2             102
  CLUS_5             3              37
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C2CD3 MUTATED       20      2      1
  C2CD3 WILD-TYPE    197     73     98
D891V8, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1            20             197
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  C2CD3 MUTATED       10      3      3
  C2CD3 WILD-TYPE    111    105     69
D891V9, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1            10             111
  CLUS_2             3             105
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C2CD3 MUTATED        7      0      1      1      7
  C2CD3 WILD-TYPE     81     66     44     54     40
D891V10, multiclass
        clus
vv       C2CD3 MUTATED C2CD3 WILD-TYPE
  CLUS_1             7              81
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(892) Variable = TAF1D MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF1D MUTATED        3      4      0      0
  TAF1D WILD-TYPE    201    133     47      3
D892V1, multiclass
        clus
vv       TAF1D MUTATED TAF1D WILD-TYPE
  CLUS_1             3             201
  CLUS_2             4             133
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF1D MUTATED        1      3      1      1      1
  TAF1D WILD-TYPE     38     93     43     87     79
D892V2, multiclass
        clus
vv       TAF1D MUTATED TAF1D WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF1D MUTATED        1      1      3      0      0
  TAF1D WILD-TYPE     25     78     70     82     58
D892V3, multiclass
        clus
vv       TAF1D MUTATED TAF1D WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF1D MUTATED        2      2      1      0
  TAF1D WILD-TYPE    125     49     70     69
D892V4, multiclass
        clus
vv       TAF1D MUTATED TAF1D WILD-TYPE
  CLUS_1             2             125
  CLUS_2             2              49
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF1D MUTATED        1      0      4      1      0
  TAF1D WILD-TYPE     83     85     81     68     47
D892V5, multiclass
        clus
vv       TAF1D MUTATED TAF1D WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TAF1D MUTATED        1      0      2      3
  TAF1D WILD-TYPE     94     74    119     77
D892V6, multiclass
        clus
vv       TAF1D MUTATED TAF1D WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TAF1D MUTATED        2      3      1      0      0      1
  TAF1D WILD-TYPE     50     61     71    104     40     58
D892V7, multiclass
        clus
vv       TAF1D MUTATED TAF1D WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF1D MUTATED        4      1      2
  TAF1D WILD-TYPE    213     74     97
D892V8, multiclass
        clus
vv       TAF1D MUTATED TAF1D WILD-TYPE
  CLUS_1             4             213
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TAF1D MUTATED        0      0      5
  TAF1D WILD-TYPE    121    108     67
D892V9, multiclass
        clus
vv       TAF1D MUTATED TAF1D WILD-TYPE
  CLUS_1             0             121
  CLUS_2             0             108
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TAF1D MUTATED        1      0      2      1      1
  TAF1D WILD-TYPE     87     66     43     54     46
D892V10, multiclass
        clus
vv       TAF1D MUTATED TAF1D WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(893) Variable = CEP120 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP120 MUTATED        0     12      0      0
  CEP120 WILD-TYPE    204    125     47      3
D893V1, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              0              204
  CLUS_2             12              125
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP120 MUTATED        1      5      1      0      3
  CEP120 WILD-TYPE     38     91     43     88     77
D893V2, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP120 MUTATED        2      2      1      1      3
  CEP120 WILD-TYPE     24     77     72     81     55
D893V3, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              2               77
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP120 MUTATED        2      5      1      1
  CEP120 WILD-TYPE    125     46     70     68
D893V4, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              5               46
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP120 MUTATED        0      2      6      2      0
  CEP120 WILD-TYPE     84     83     79     67     47
D893V5, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              6               79
  CLUS_4              2               67
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEP120 MUTATED        2      1      1      6
  CEP120 WILD-TYPE     93     73    120     74
D893V6, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEP120 MUTATED        3      6      2      1      0      0
  CEP120 WILD-TYPE     49     58     70    103     40     59
D893V7, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              6               58
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP120 MUTATED       11      1      0
  CEP120 WILD-TYPE    206     74     99
D893V8, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1             11              206
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CEP120 MUTATED        6      1      3
  CEP120 WILD-TYPE    115    107     69
D893V9, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEP120 MUTATED        2      1      3      0      4
  CEP120 WILD-TYPE     86     65     42     55     43
D893V10, multiclass
        clus
vv       CEP120 MUTATED CEP120 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(894) Variable = OR2M5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2M5 MUTATED       10      5      0      0
  OR2M5 WILD-TYPE    194    132     47      3
D894V1, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1            10             194
  CLUS_2             5             132
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2M5 MUTATED        1      7      2      2      1
  OR2M5 WILD-TYPE     38     89     42     86     79
D894V2, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             7              89
  CLUS_3             2              42
  CLUS_4             2              86
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2M5 MUTATED        0      4      6      2      1
  OR2M5 WILD-TYPE     26     75     67     80     57
D894V3, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             6              67
  CLUS_4             2              80
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2M5 MUTATED        7      2      2      2
  OR2M5 WILD-TYPE    120     49     69     67
D894V4, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             7             120
  CLUS_2             2              49
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2M5 MUTATED        2      4      5      3      1
  OR2M5 WILD-TYPE     82     81     80     66     46
D894V5, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             4              81
  CLUS_3             5              80
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR2M5 MUTATED        5      2      4      4
  OR2M5 WILD-TYPE     90     72    117     76
D894V6, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             2              72
  CLUS_3             4             117
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR2M5 MUTATED        4      2      1      5      2      1
  OR2M5 WILD-TYPE     48     62     71     99     38     58
D894V7, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             5              99
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2M5 MUTATED        9      3      3
  OR2M5 WILD-TYPE    208     72     96
D894V8, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             3              72
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR2M5 MUTATED        6      4      1
  OR2M5 WILD-TYPE    115    104     71
D894V9, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             4             104
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR2M5 MUTATED        5      1      0      2      3
  OR2M5 WILD-TYPE     83     65     45     53     44
D894V10, multiclass
        clus
vv       OR2M5 MUTATED OR2M5 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             2              53
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(895) Variable = ANKMY2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKMY2 MUTATED        1      2      1      0
  ANKMY2 WILD-TYPE    203    135     46      3
D895V1, multiclass
        clus
vv       ANKMY2 MUTATED ANKMY2 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              2              135
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKMY2 MUTATED        2      1      0      0      1
  ANKMY2 WILD-TYPE     37     95     44     88     79
D895V2, multiclass
        clus
vv       ANKMY2 MUTATED ANKMY2 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              1               95
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKMY2 MUTATED        1      0      1      1      1
  ANKMY2 WILD-TYPE     25     79     72     81     57
D895V3, multiclass
        clus
vv       ANKMY2 MUTATED ANKMY2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               79
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKMY2 MUTATED        1      2      0      1
  ANKMY2 WILD-TYPE    126     49     71     68
D895V4, multiclass
        clus
vv       ANKMY2 MUTATED ANKMY2 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKMY2 MUTATED        1      1      2      0      0
  ANKMY2 WILD-TYPE     83     84     83     69     47
D895V5, multiclass
        clus
vv       ANKMY2 MUTATED ANKMY2 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              2               83
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKMY2 MUTATED        0      1      1      2
  ANKMY2 WILD-TYPE     95     73    120     78
D895V6, multiclass
        clus
vv       ANKMY2 MUTATED ANKMY2 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANKMY2 MUTATED        3      0      0      1      0      0
  ANKMY2 WILD-TYPE     49     64     72    103     40     59
D895V7, multiclass
        clus
vv       ANKMY2 MUTATED ANKMY2 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              0               64
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKMY2 MUTATED        3      1      0
  ANKMY2 WILD-TYPE    214     74     99
D895V8, multiclass
        clus
vv       ANKMY2 MUTATED ANKMY2 WILD-TYPE
  CLUS_1              3              214
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ANKMY2 MUTATED        3      1      0
  ANKMY2 WILD-TYPE    118    107     72
D895V9, multiclass
        clus
vv       ANKMY2 MUTATED ANKMY2 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              1              107
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKMY2 MUTATED        2      1      0      0      1
  ANKMY2 WILD-TYPE     86     65     45     55     46
D895V10, multiclass
        clus
vv       ANKMY2 MUTATED ANKMY2 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              0               45
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(896) Variable = TYRO3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYRO3 MUTATED        2      5      4      0
  TYRO3 WILD-TYPE    202    132     43      3
D896V1, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             5             132
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TYRO3 MUTATED        2      5      1      0      2
  TYRO3 WILD-TYPE     37     91     43     88     78
D896V2, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TYRO3 MUTATED        2      1      3      1      3
  TYRO3 WILD-TYPE     24     78     70     81     55
D896V3, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             1              78
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYRO3 MUTATED        4      4      1      1
  TYRO3 WILD-TYPE    123     47     70     68
D896V4, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TYRO3 MUTATED        0      3      4      2      2
  TYRO3 WILD-TYPE     84     82     81     67     45
D896V5, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             4              81
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TYRO3 MUTATED        3      2      2      4
  TYRO3 WILD-TYPE     92     72    119     76
D896V6, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TYRO3 MUTATED        2      3      2      1      3      0
  TYRO3 WILD-TYPE     50     61     70    103     37     59
D896V7, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             3              37
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TYRO3 MUTATED       10      1      0
  TYRO3 WILD-TYPE    207     74     99
D896V8, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TYRO3 MUTATED        5      2      3
  TYRO3 WILD-TYPE    116    106     69
D896V9, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             2             106
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TYRO3 MUTATED        2      2      1      0      5
  TYRO3 WILD-TYPE     86     64     44     55     42
D896V10, multiclass
        clus
vv       TYRO3 MUTATED TYRO3 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             2              64
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(897) Variable = VASH1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VASH1 MUTATED        1      4      2      0
  VASH1 WILD-TYPE    203    133     45      3
D897V1, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             4             133
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VASH1 MUTATED        1      3      1      0      1
  VASH1 WILD-TYPE     38     93     43     88     79
D897V2, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VASH1 MUTATED        0      1      2      1      2
  VASH1 WILD-TYPE     26     78     71     81     56
D897V3, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VASH1 MUTATED        1      3      1      1
  VASH1 WILD-TYPE    126     48     70     68
D897V4, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             3              48
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VASH1 MUTATED        0      1      4      1      1
  VASH1 WILD-TYPE     84     84     81     68     46
D897V5, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VASH1 MUTATED        2      1      0      4
  VASH1 WILD-TYPE     93     73    121     76
D897V6, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VASH1 MUTATED        3      2      1      1      0      0
  VASH1 WILD-TYPE     49     62     71    103     40     59
D897V7, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VASH1 MUTATED        6      1      0
  VASH1 WILD-TYPE    211     74     99
D897V8, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  VASH1 MUTATED        1      1      1
  VASH1 WILD-TYPE    120    107     71
D897V9, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VASH1 MUTATED        1      1      1      0      0
  VASH1 WILD-TYPE     87     65     44     55     47
D897V10, multiclass
        clus
vv       VASH1 MUTATED VASH1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(898) Variable = MCM4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM4 MUTATED        1     10      4      0
  MCM4 WILD-TYPE    203    127     43      3
D898V1, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            1            203
  CLUS_2           10            127
  CLUS_3            4             43
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MCM4 MUTATED        2      7      1      0      0
  MCM4 WILD-TYPE     37     89     43     88     80
D898V2, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            7             89
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MCM4 MUTATED        1      3      4      1      4
  MCM4 WILD-TYPE     25     76     69     81     54
D898V3, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            4             69
  CLUS_4            1             81
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM4 MUTATED        4      8      0      1
  MCM4 WILD-TYPE    123     43     71     68
D898V4, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            4            123
  CLUS_2            8             43
  CLUS_3            0             71
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MCM4 MUTATED        0      2      6      3      4
  MCM4 WILD-TYPE     84     83     79     66     43
D898V5, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            6             79
  CLUS_4            3             66
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MCM4 MUTATED        5      1      1      8
  MCM4 WILD-TYPE     90     73    120     72
D898V6, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            5             90
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            8             72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MCM4 MUTATED        4      7      2      1      1      0
  MCM4 WILD-TYPE     48     57     70    103     39     59
D898V7, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            7             57
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCM4 MUTATED       14      1      0
  MCM4 WILD-TYPE    203     74     99
D898V8, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1           14            203
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MCM4 MUTATED        6      0      4
  MCM4 WILD-TYPE    115    108     68
D898V9, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            6            115
  CLUS_2            0            108
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MCM4 MUTATED        2      1      2      0      5
  MCM4 WILD-TYPE     86     65     43     55     42
D898V10, multiclass
        clus
vv       MCM4 MUTATED MCM4 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            1             65
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(899) Variable = PPP1R12C MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12C MUTATED        0      9      0      0
  PPP1R12C WILD-TYPE    204    128     47      3
D899V1, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                0                204
  CLUS_2                9                128
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R12C MUTATED        1      6      1      0      0
  PPP1R12C WILD-TYPE     38     90     43     88     80
D899V2, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                6                 90
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R12C MUTATED        0      1      3      1      2
  PPP1R12C WILD-TYPE     26     78     70     81     56
D899V3, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                1                 78
  CLUS_3                3                 70
  CLUS_4                1                 81
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12C MUTATED        1      4      1      1
  PPP1R12C WILD-TYPE    126     47     70     68
D899V4, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                1                126
  CLUS_2                4                 47
  CLUS_3                1                 70
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R12C MUTATED        0      2      4      2      1
  PPP1R12C WILD-TYPE     84     83     81     67     46
D899V5, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                2                 83
  CLUS_3                4                 81
  CLUS_4                2                 67
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPP1R12C MUTATED        2      1      0      6
  PPP1R12C WILD-TYPE     93     73    121     74
D899V6, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                1                 73
  CLUS_3                0                121
  CLUS_4                6                 74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPP1R12C MUTATED        4      1      1      1      2      0
  PPP1R12C WILD-TYPE     48     63     71    103     38     59
D899V7, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                1                 63
  CLUS_3                1                 71
  CLUS_4                1                103
  CLUS_5                2                 38
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R12C MUTATED        8      1      0
  PPP1R12C WILD-TYPE    209     74     99
D899V8, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                8                209
  CLUS_2                1                 74
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  PPP1R12C MUTATED        6      1      1
  PPP1R12C WILD-TYPE    115    107     71
D899V9, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                6                115
  CLUS_2                1                107
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPP1R12C MUTATED        4      0      0      0      4
  PPP1R12C WILD-TYPE     84     66     45     55     43
D899V10, multiclass
        clus
vv       PPP1R12C MUTATED PPP1R12C WILD-TYPE
  CLUS_1                4                 84
  CLUS_2                0                 66
  CLUS_3                0                 45
  CLUS_4                0                 55
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(900) Variable = PRB1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRB1 MUTATED        0      2      1      0
  PRB1 WILD-TYPE    204    135     46      3
D900V1, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            2            135
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRB1 MUTATED        0      1      0      0      0
  PRB1 WILD-TYPE     39     95     44     88     80
D900V2, multiclass
[1] "Remove cluster labels:" "PRB1 MUTATED"          
clus
  PRB1 MUTATED PRB1 WILD-TYPE 
             1            346 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-7703     TCGA-BR-7704     TCGA-BR-7707     TCGA-BR-7715 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8060 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8078     TCGA-BR-8080     TCGA-BR-8081 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8284     TCGA-BR-8285     TCGA-BR-8286     TCGA-BR-8289 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8360 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368     TCGA-BR-8369 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8483     TCGA-BR-8484     TCGA-BR-8485     TCGA-BR-8486 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8589     TCGA-BR-8590 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8686     TCGA-BR-8687     TCGA-BR-8690 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A44T     TCGA-BR-A44U     TCGA-BR-A452     TCGA-BR-A453 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A4CQ     TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A4J2     TCGA-BR-A4J4     TCGA-BR-A4J5     TCGA-BR-A4J6 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4PE 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A4PF     TCGA-BR-A4QI     TCGA-BR-A4QL     TCGA-BR-A4QM 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800     TCGA-CD-5801 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804     TCGA-CD-5813 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8527 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-8528     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8533     TCGA-CD-8534     TCGA-CD-8535 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-A48A     TCGA-CD-A48C     TCGA-CD-A4MH     TCGA-CD-A4MI 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-A4MJ     TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-5716 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY     TCGA-D7-A4Z0 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-A6ET     TCGA-D7-A6EV     TCGA-D7-A6EX     TCGA-D7-A6EY 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-A6EZ     TCGA-D7-A6F0     TCGA-D7-A6F2     TCGA-D7-A747 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-A748     TCGA-D7-A74A     TCGA-D7-A74B     TCGA-EQ-5647 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-EQ-8122     TCGA-EQ-A4SO     TCGA-F1-6177     TCGA-F1-6874 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-F1-6875     TCGA-F1-A448     TCGA-F1-A72C     TCGA-FP-7735 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211     TCGA-FP-8631 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FP-A4BE     TCGA-FP-A4BF     TCGA-FP-A8CX     TCGA-FP-A9TM 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7133     TCGA-HF-7134 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HF-7136     TCGA-HF-A5NB     TCGA-HJ-7597     TCGA-HU-8238 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-8243     TCGA-HU-8244     TCGA-HU-8249     TCGA-HU-8602 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8608     TCGA-HU-8610     TCGA-HU-A4G2 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-A4G3     TCGA-HU-A4G6     TCGA-HU-A4G8     TCGA-HU-A4G9 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-A4GC     TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-A4GJ     TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-A4GT     TCGA-HU-A4GU     TCGA-HU-A4GX     TCGA-HU-A4GY 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-A4H0     TCGA-HU-A4H2     TCGA-HU-A4H3     TCGA-HU-A4H4 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8     TCGA-HU-A4HB 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-A4HD     TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-IN-8663     TCGA-IN-A6RI     TCGA-IN-A6RJ     TCGA-IN-A6RL 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-IN-A6RN     TCGA-IN-A6RO     TCGA-IN-A6RP     TCGA-IN-A6RR 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-IN-A6RS     TCGA-IN-A7NR     TCGA-IN-A7NT     TCGA-IN-A7NU 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-IN-AB1V     TCGA-IN-AB1X     TCGA-IP-7968     TCGA-KB-A6F5 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-KB-A6F7     TCGA-KB-A93G     TCGA-KB-A93J     TCGA-MX-A5UG 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-MX-A5UJ     TCGA-MX-A663     TCGA-MX-A666     TCGA-R5-A7O7 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-R5-A7ZE     TCGA-R5-A7ZF     TCGA-R5-A7ZI     TCGA-R5-A7ZR 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-R5-A804     TCGA-R5-A805     TCGA-RD-A7BS     TCGA-RD-A7BT 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV     TCGA-RD-A8MW 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-RD-A8N2     TCGA-RD-A8N4 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-RD-A8N5     TCGA-RD-A8N6     TCGA-RD-A8N9     TCGA-SW-A7EA 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-SW-A7EB     TCGA-VQ-A8DL     TCGA-VQ-A8DT     TCGA-VQ-A8DU 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-A8DV     TCGA-VQ-A8DZ     TCGA-VQ-A8E2     TCGA-VQ-A8E7 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-A8P2     TCGA-VQ-A8P3     TCGA-VQ-A8PE     TCGA-VQ-A8PK 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-A8PM     TCGA-VQ-A8PQ     TCGA-VQ-A91Q     TCGA-VQ-A91U 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-A94T     TCGA-VQ-AA64 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-AA68     TCGA-VQ-AA69     TCGA-VQ-AA6A     TCGA-VQ-AA6B 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-AA6F     TCGA-VQ-AA6G     TCGA-VQ-AA6I     TCGA-VQ-AA6J 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRB1 MUTATED        0      2      0      0      1
  PRB1 WILD-TYPE     26     77     73     82     57
D900V3, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            0             73
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRB1 MUTATED        0      2      1      0
  PRB1 WILD-TYPE    127     49     70     69
D900V4, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            2             49
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRB1 MUTATED        0      0      2      0      1
  PRB1 WILD-TYPE     84     85     83     69     46
D900V5, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            2             83
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRB1 MUTATED        0      1      0      2
  PRB1 WILD-TYPE     95     73    121     78
D900V6, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            0             95
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRB1 MUTATED        1      1      1      0      0      0
  PRB1 WILD-TYPE     51     63     71    104     40     59
D900V7, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            1             63
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRB1 MUTATED        3      0      0
  PRB1 WILD-TYPE    214     75     99
D900V8, multiclass
        clus
vv       PRB1 MUTATED PRB1 WILD-TYPE
  CLUS_1            3            214
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PRB1 MUTATED        0      0      1
  PRB1 WILD-TYPE    121    108     71
D900V9, multiclass
[1] "Remove cluster labels:" "PRB1 MUTATED"          
clus
  PRB1 MUTATED PRB1 WILD-TYPE 
             1            300 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-7703     TCGA-BR-7704     TCGA-BR-7707     TCGA-BR-7715 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8060     TCGA-BR-8077     TCGA-BR-8078 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8360 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J5     TCGA-BR-A4J6 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8533     TCGA-CD-8534 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-A489     TCGA-CD-A48C     TCGA-CD-A4MH     TCGA-CD-A4MI 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5716 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576     TCGA-D7-8578 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU     TCGA-D7-A4YV 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-D7-A6ET     TCGA-D7-A6EV 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-A6EX     TCGA-D7-A6EY     TCGA-D7-A6EZ     TCGA-D7-A6F0 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-A6F2     TCGA-D7-A747     TCGA-D7-A748     TCGA-D7-A74A 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-A74B     TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FP-8210     TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FP-A9TM     TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7134 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HF-7136     TCGA-HU-8238     TCGA-HU-8243     TCGA-HU-8602 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-A4GC     TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-A4GJ     TCGA-HU-A4GN     TCGA-HU-A4GQ     TCGA-HU-A4GT 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H4 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8     TCGA-HU-A4HB 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-IN-A6RI     TCGA-IN-A6RJ     TCGA-IN-A6RL     TCGA-IN-A6RN 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-IN-A6RP     TCGA-IN-A7NR     TCGA-IN-A7NT     TCGA-IN-A7NU 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-IN-AB1V     TCGA-IN-AB1X     TCGA-IP-7968     TCGA-KB-A6F5 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-KB-A6F7     TCGA-KB-A93J     TCGA-MX-A5UG     TCGA-MX-A5UJ 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-MX-A663     TCGA-MX-A666     TCGA-R5-A7O7     TCGA-R5-A7ZE 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-R5-A7ZF     TCGA-R5-A7ZI     TCGA-R5-A7ZR     TCGA-R5-A804 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-R5-A805     TCGA-RD-A7BS     TCGA-RD-A7BW     TCGA-RD-A7C1 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-RD-A8MV     TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-RD-A8N5     TCGA-RD-A8N6     TCGA-RD-A8N9     TCGA-SW-A7EA 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-SW-A7EB     TCGA-VQ-A8DL     TCGA-VQ-A8DU     TCGA-VQ-A8DV 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-A8E2     TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-A8PE     TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-A91Q     TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-A94T     TCGA-VQ-AA64     TCGA-VQ-AA68     TCGA-VQ-AA69 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-AA6A     TCGA-VQ-AA6B     TCGA-VQ-AA6F     TCGA-VQ-AA6G 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-AA6I     TCGA-VQ-AA6J     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRB1 MUTATED        0      0      0      0      1
  PRB1 WILD-TYPE     88     66     45     55     46
D900V10, multiclass
[1] "Remove cluster labels:" "PRB1 MUTATED"          
clus
  PRB1 MUTATED PRB1 WILD-TYPE 
             1            300 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-7703     TCGA-BR-7704     TCGA-BR-7707     TCGA-BR-7715 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8060     TCGA-BR-8077     TCGA-BR-8078 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8360 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J5     TCGA-BR-A4J6 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8533     TCGA-CD-8534 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CD-A489     TCGA-CD-A48C     TCGA-CD-A4MH     TCGA-CD-A4MI 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5716 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576     TCGA-D7-8578 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU     TCGA-D7-A4YV 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-D7-A6ET     TCGA-D7-A6EV 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-A6EX     TCGA-D7-A6EY     TCGA-D7-A6EZ     TCGA-D7-A6F0 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-A6F2     TCGA-D7-A747     TCGA-D7-A748     TCGA-D7-A74A 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-D7-A74B     TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FP-7829     TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FP-8210     TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-FP-A9TM     TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7134 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HF-7136     TCGA-HU-8238     TCGA-HU-8243     TCGA-HU-8602 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-8604     TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-A4GC     TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-A4GJ     TCGA-HU-A4GN     TCGA-HU-A4GQ     TCGA-HU-A4GT 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H4 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8     TCGA-HU-A4HB 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-IN-A6RI     TCGA-IN-A6RJ     TCGA-IN-A6RL     TCGA-IN-A6RN 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-IN-A6RP     TCGA-IN-A7NR     TCGA-IN-A7NT     TCGA-IN-A7NU 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-IN-AB1V     TCGA-IN-AB1X     TCGA-IP-7968     TCGA-KB-A6F5 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-KB-A6F7     TCGA-KB-A93J     TCGA-MX-A5UG     TCGA-MX-A5UJ 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-MX-A663     TCGA-MX-A666     TCGA-R5-A7O7     TCGA-R5-A7ZE 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-R5-A7ZF     TCGA-R5-A7ZI     TCGA-R5-A7ZR     TCGA-R5-A804 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-R5-A805     TCGA-RD-A7BS     TCGA-RD-A7BW     TCGA-RD-A7C1 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-RD-A8MV     TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-RD-A8N5     TCGA-RD-A8N6     TCGA-RD-A8N9     TCGA-SW-A7EA 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-SW-A7EB     TCGA-VQ-A8DL     TCGA-VQ-A8DU     TCGA-VQ-A8DV 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-A8E2     TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-A8PE     TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-A91Q     TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-A94T     TCGA-VQ-AA64     TCGA-VQ-AA68     TCGA-VQ-AA69 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-AA6A     TCGA-VQ-AA6B     TCGA-VQ-AA6F     TCGA-VQ-AA6G 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 
    TCGA-VQ-AA6I     TCGA-VQ-AA6J     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" "PRB1 WILD-TYPE" 

Clustering(901) Variable = TPD52L1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPD52L1 MUTATED        2      7      1      0
  TPD52L1 WILD-TYPE    202    130     46      3
D901V1, multiclass
        clus
vv       TPD52L1 MUTATED TPD52L1 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               7               130
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPD52L1 MUTATED        2      2      0      2      1
  TPD52L1 WILD-TYPE     37     94     44     86     79
D901V2, multiclass
        clus
vv       TPD52L1 MUTATED TPD52L1 WILD-TYPE
  CLUS_1               2                37
  CLUS_2               2                94
  CLUS_3               0                44
  CLUS_4               2                86
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPD52L1 MUTATED        0      4      2      1      3
  TPD52L1 WILD-TYPE     26     75     71     81     55
D901V3, multiclass
        clus
vv       TPD52L1 MUTATED TPD52L1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               4                75
  CLUS_3               2                71
  CLUS_4               1                81
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPD52L1 MUTATED        2      5      2      1
  TPD52L1 WILD-TYPE    125     46     69     68
D901V4, multiclass
        clus
vv       TPD52L1 MUTATED TPD52L1 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               5                46
  CLUS_3               2                69
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPD52L1 MUTATED        1      2      3      3      0
  TPD52L1 WILD-TYPE     83     83     82     66     47
D901V5, multiclass
        clus
vv       TPD52L1 MUTATED TPD52L1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               2                83
  CLUS_3               3                82
  CLUS_4               3                66
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPD52L1 MUTATED        4      1      1      3
  TPD52L1 WILD-TYPE     91     73    120     77
D901V6, multiclass
        clus
vv       TPD52L1 MUTATED TPD52L1 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TPD52L1 MUTATED        2      4      0      1      1      2
  TPD52L1 WILD-TYPE     50     60     72    103     39     57
D901V7, multiclass
        clus
vv       TPD52L1 MUTATED TPD52L1 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               4                60
  CLUS_3               0                72
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               2                57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TPD52L1 MUTATED        6      1      3
  TPD52L1 WILD-TYPE    211     74     96
D901V8, multiclass
        clus
vv       TPD52L1 MUTATED TPD52L1 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               1                74
  CLUS_3               3                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TPD52L1 MUTATED        4      1      2
  TPD52L1 WILD-TYPE    117    107     70
D901V9, multiclass
        clus
vv       TPD52L1 MUTATED TPD52L1 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               1               107
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TPD52L1 MUTATED        2      1      1      2      1
  TPD52L1 WILD-TYPE     86     65     44     53     46
D901V10, multiclass
        clus
vv       TPD52L1 MUTATED TPD52L1 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               1                65
  CLUS_3               1                44
  CLUS_4               2                53
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(902) Variable = IGFALS MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFALS MUTATED        3      6      0      0
  IGFALS WILD-TYPE    201    131     47      3
D902V1, multiclass
        clus
vv       IGFALS MUTATED IGFALS WILD-TYPE
  CLUS_1              3              201
  CLUS_2              6              131
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGFALS MUTATED        0      3      2      1      1
  IGFALS WILD-TYPE     39     93     42     87     79
D902V2, multiclass
        clus
vv       IGFALS MUTATED IGFALS WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGFALS MUTATED        3      2      2      0      2
  IGFALS WILD-TYPE     23     77     71     82     56
D902V3, multiclass
        clus
vv       IGFALS MUTATED IGFALS WILD-TYPE
  CLUS_1              3               23
  CLUS_2              2               77
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFALS MUTATED        3      4      2      0
  IGFALS WILD-TYPE    124     47     69     69
D902V4, multiclass
        clus
vv       IGFALS MUTATED IGFALS WILD-TYPE
  CLUS_1              3              124
  CLUS_2              4               47
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGFALS MUTATED        2      1      3      1      2
  IGFALS WILD-TYPE     82     84     82     68     45
D902V5, multiclass
        clus
vv       IGFALS MUTATED IGFALS WILD-TYPE
  CLUS_1              2               82
  CLUS_2              1               84
  CLUS_3              3               82
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGFALS MUTATED        3      1      1      4
  IGFALS WILD-TYPE     92     73    120     76
D902V6, multiclass
        clus
vv       IGFALS MUTATED IGFALS WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IGFALS MUTATED        2      2      1      1      0      3
  IGFALS WILD-TYPE     50     62     71    103     40     56
D902V7, multiclass
        clus
vv       IGFALS MUTATED IGFALS WILD-TYPE
  CLUS_1              2               50
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              3               56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFALS MUTATED        6      0      3
  IGFALS WILD-TYPE    211     75     96
D902V8, multiclass
        clus
vv       IGFALS MUTATED IGFALS WILD-TYPE
  CLUS_1              6              211
  CLUS_2              0               75
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGFALS MUTATED        1      0      3
  IGFALS WILD-TYPE    120    108     69
D902V9, multiclass
        clus
vv       IGFALS MUTATED IGFALS WILD-TYPE
  CLUS_1              1              120
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGFALS MUTATED        0      0      2      0      2
  IGFALS WILD-TYPE     88     66     43     55     45
D902V10, multiclass
        clus
vv       IGFALS MUTATED IGFALS WILD-TYPE
  CLUS_1              0               88
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(903) Variable = PAPOLB MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAPOLB MUTATED        4      9      1      0
  PAPOLB WILD-TYPE    200    128     46      3
D903V1, multiclass
        clus
vv       PAPOLB MUTATED PAPOLB WILD-TYPE
  CLUS_1              4              200
  CLUS_2              9              128
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAPOLB MUTATED        1      5      2      2      3
  PAPOLB WILD-TYPE     38     91     42     86     77
D903V2, multiclass
        clus
vv       PAPOLB MUTATED PAPOLB WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              2               42
  CLUS_4              2               86
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAPOLB MUTATED        2      3      2      2      1
  PAPOLB WILD-TYPE     24     76     71     80     57
D903V3, multiclass
        clus
vv       PAPOLB MUTATED PAPOLB WILD-TYPE
  CLUS_1              2               24
  CLUS_2              3               76
  CLUS_3              2               71
  CLUS_4              2               80
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAPOLB MUTATED        3      2      3      2
  PAPOLB WILD-TYPE    124     49     68     67
D903V4, multiclass
        clus
vv       PAPOLB MUTATED PAPOLB WILD-TYPE
  CLUS_1              3              124
  CLUS_2              2               49
  CLUS_3              3               68
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAPOLB MUTATED        2      3      5      2      2
  PAPOLB WILD-TYPE     82     82     80     67     45
D903V5, multiclass
        clus
vv       PAPOLB MUTATED PAPOLB WILD-TYPE
  CLUS_1              2               82
  CLUS_2              3               82
  CLUS_3              5               80
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAPOLB MUTATED        4      4      4      2
  PAPOLB WILD-TYPE     91     70    117     78
D903V6, multiclass
        clus
vv       PAPOLB MUTATED PAPOLB WILD-TYPE
  CLUS_1              4               91
  CLUS_2              4               70
  CLUS_3              4              117
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAPOLB MUTATED        1      6      1      2      2      2
  PAPOLB WILD-TYPE     51     58     71    102     38     57
D903V7, multiclass
        clus
vv       PAPOLB MUTATED PAPOLB WILD-TYPE
  CLUS_1              1               51
  CLUS_2              6               58
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              2               38
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PAPOLB MUTATED        8      4      2
  PAPOLB WILD-TYPE    209     71     97
D903V8, multiclass
        clus
vv       PAPOLB MUTATED PAPOLB WILD-TYPE
  CLUS_1              8              209
  CLUS_2              4               71
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PAPOLB MUTATED        5      2      6
  PAPOLB WILD-TYPE    116    106     66
D903V9, multiclass
        clus
vv       PAPOLB MUTATED PAPOLB WILD-TYPE
  CLUS_1              5              116
  CLUS_2              2              106
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAPOLB MUTATED        3      3      4      2      1
  PAPOLB WILD-TYPE     85     63     41     53     46
D903V10, multiclass
        clus
vv       PAPOLB MUTATED PAPOLB WILD-TYPE
  CLUS_1              3               85
  CLUS_2              3               63
  CLUS_3              4               41
  CLUS_4              2               53
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(904) Variable = SMAD2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD2 MUTATED        1      6      2      0
  SMAD2 WILD-TYPE    203    131     45      3
D904V1, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             6             131
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD2 MUTATED        0      4      2      0      0
  SMAD2 WILD-TYPE     39     92     42     88     80
D904V2, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD2 MUTATED        1      3      2      0      1
  SMAD2 WILD-TYPE     25     76     71     82     57
D904V3, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD2 MUTATED        2      2      3      0
  SMAD2 WILD-TYPE    125     49     68     69
D904V4, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             2              49
  CLUS_3             3              68
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD2 MUTATED        0      1      3      1      4
  SMAD2 WILD-TYPE     84     84     82     68     43
D904V5, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMAD2 MUTATED        3      0      0      6
  SMAD2 WILD-TYPE     92     74    121     74
D904V6, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMAD2 MUTATED        1      4      3      1      0      0
  SMAD2 WILD-TYPE     51     60     69    103     40     59
D904V7, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             4              60
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD2 MUTATED        9      0      0
  SMAD2 WILD-TYPE    208     75     99
D904V8, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMAD2 MUTATED        2      1      2
  SMAD2 WILD-TYPE    119    107     70
D904V9, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMAD2 MUTATED        3      0      1      0      1
  SMAD2 WILD-TYPE     85     66     44     55     46
D904V10, multiclass
        clus
vv       SMAD2 MUTATED SMAD2 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(905) Variable = ZMYND19 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYND19 MUTATED        0      7      1      0
  ZMYND19 WILD-TYPE    204    130     46      3
D905V1, multiclass
        clus
vv       ZMYND19 MUTATED ZMYND19 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               7               130
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYND19 MUTATED        0      3      0      0      3
  ZMYND19 WILD-TYPE     39     93     44     88     77
D905V2, multiclass
        clus
vv       ZMYND19 MUTATED ZMYND19 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               3                77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYND19 MUTATED        0      3      2      0      1
  ZMYND19 WILD-TYPE     26     76     71     82     57
D905V3, multiclass
        clus
vv       ZMYND19 MUTATED ZMYND19 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               3                76
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYND19 MUTATED        1      3      2      0
  ZMYND19 WILD-TYPE    126     48     69     69
D905V4, multiclass
        clus
vv       ZMYND19 MUTATED ZMYND19 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               3                48
  CLUS_3               2                69
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYND19 MUTATED        0      2      4      2      0
  ZMYND19 WILD-TYPE     84     83     81     67     47
D905V5, multiclass
        clus
vv       ZMYND19 MUTATED ZMYND19 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3               4                81
  CLUS_4               2                67
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZMYND19 MUTATED        4      1      1      2
  ZMYND19 WILD-TYPE     91     73    120     78
D905V6, multiclass
        clus
vv       ZMYND19 MUTATED ZMYND19 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZMYND19 MUTATED        1      4      2      1      0      0
  ZMYND19 WILD-TYPE     51     60     70    103     40     59
D905V7, multiclass
        clus
vv       ZMYND19 MUTATED ZMYND19 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               4                60
  CLUS_3               2                70
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZMYND19 MUTATED        6      1      1
  ZMYND19 WILD-TYPE    211     74     98
D905V8, multiclass
        clus
vv       ZMYND19 MUTATED ZMYND19 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZMYND19 MUTATED        2      1      3
  ZMYND19 WILD-TYPE    119    107     69
D905V9, multiclass
        clus
vv       ZMYND19 MUTATED ZMYND19 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               1               107
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZMYND19 MUTATED        0      1      2      0      3
  ZMYND19 WILD-TYPE     88     65     43     55     44
D905V10, multiclass
        clus
vv       ZMYND19 MUTATED ZMYND19 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(906) Variable = UBE2Q1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBE2Q1 MUTATED        1      5      1      0
  UBE2Q1 WILD-TYPE    203    132     46      3
D906V1, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              5              132
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBE2Q1 MUTATED        0      2      0      0      1
  UBE2Q1 WILD-TYPE     39     94     44     88     79
D906V2, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              2               94
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBE2Q1 MUTATED        1      1      1      1      3
  UBE2Q1 WILD-TYPE     25     78     72     81     55
D906V3, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBE2Q1 MUTATED        1      5      0      1
  UBE2Q1 WILD-TYPE    126     46     71     68
D906V4, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              5               46
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBE2Q1 MUTATED        0      1      3      0      2
  UBE2Q1 WILD-TYPE     84     84     82     69     45
D906V5, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UBE2Q1 MUTATED        0      1      1      4
  UBE2Q1 WILD-TYPE     95     73    120     76
D906V6, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UBE2Q1 MUTATED        1      4      1      0      0      1
  UBE2Q1 WILD-TYPE     51     60     71    104     40     58
D906V7, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UBE2Q1 MUTATED        6      0      1
  UBE2Q1 WILD-TYPE    211     75     98
D906V8, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  UBE2Q1 MUTATED        1      0      2
  UBE2Q1 WILD-TYPE    120    108     70
D906V9, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              1              120
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UBE2Q1 MUTATED        0      0      1      0      2
  UBE2Q1 WILD-TYPE     88     66     44     55     45
D906V10, multiclass
        clus
vv       UBE2Q1 MUTATED UBE2Q1 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(907) Variable = RYR2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RYR2 MUTATED       29     40      8      0
  RYR2 WILD-TYPE    175     97     39      3
D907V1, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           29            175
  CLUS_2           40             97
  CLUS_3            8             39
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RYR2 MUTATED        8     27      7     17      4
  RYR2 WILD-TYPE     31     69     37     71     76
D907V2, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1            8             31
  CLUS_2           27             69
  CLUS_3            7             37
  CLUS_4           17             71
  CLUS_5            4             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RYR2 MUTATED        6     18     17      7     18
  RYR2 WILD-TYPE     20     61     56     75     40
D907V3, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1            6             20
  CLUS_2           18             61
  CLUS_3           17             56
  CLUS_4            7             75
  CLUS_5           18             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RYR2 MUTATED       20     25     12      9
  RYR2 WILD-TYPE    107     26     59     60
D907V4, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           20            107
  CLUS_2           25             26
  CLUS_3           12             59
  CLUS_4            9             60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RYR2 MUTATED       12     15     26     11      8
  RYR2 WILD-TYPE     72     70     59     58     39
D907V5, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           12             72
  CLUS_2           15             70
  CLUS_3           26             59
  CLUS_4           11             58
  CLUS_5            8             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RYR2 MUTATED       19     14     14     25
  RYR2 WILD-TYPE     76     60    107     55
D907V6, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           19             76
  CLUS_2           14             60
  CLUS_3           14            107
  CLUS_4           25             55
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RYR2 MUTATED       13     21     12     16      6      8
  RYR2 WILD-TYPE     39     43     60     88     34     51
D907V7, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           13             39
  CLUS_2           21             43
  CLUS_3           12             60
  CLUS_4           16             88
  CLUS_5            6             34
  CLUS_6            8             51
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RYR2 MUTATED       48      8     20
  RYR2 WILD-TYPE    169     67     79
D907V8, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           48            169
  CLUS_2            8             67
  CLUS_3           20             79
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RYR2 MUTATED       21     17     19
  RYR2 WILD-TYPE    100     91     53
D907V9, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           21            100
  CLUS_2           17             91
  CLUS_3           19             53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RYR2 MUTATED       15      8      9      9     16
  RYR2 WILD-TYPE     73     58     36     46     31
D907V10, multiclass
        clus
vv       RYR2 MUTATED RYR2 WILD-TYPE
  CLUS_1           15             73
  CLUS_2            8             58
  CLUS_3            9             36
  CLUS_4            9             46
  CLUS_5           16             31
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(908) Variable = STAU1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU1 MUTATED        0     10      0      0
  STAU1 WILD-TYPE    204    127     47      3
D908V1, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            10             127
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAU1 MUTATED        1      5      0      0      0
  STAU1 WILD-TYPE     38     91     44     88     80
D908V2, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAU1 MUTATED        0      3      0      2      4
  STAU1 WILD-TYPE     26     76     73     80     54
D908V3, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             0              73
  CLUS_4             2              80
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU1 MUTATED        2      4      1      2
  STAU1 WILD-TYPE    125     47     70     67
D908V4, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAU1 MUTATED        0      2      3      2      1
  STAU1 WILD-TYPE     84     83     82     67     46
D908V5, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             3              82
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAU1 MUTATED        3      2      0      3
  STAU1 WILD-TYPE     92     72    121     77
D908V6, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STAU1 MUTATED        3      5      0      0      2      0
  STAU1 WILD-TYPE     49     59     72    104     38     59
D908V7, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             5              59
  CLUS_3             0              72
  CLUS_4             0             104
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAU1 MUTATED        7      1      2
  STAU1 WILD-TYPE    210     74     97
D908V8, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAU1 MUTATED        3      1      2
  STAU1 WILD-TYPE    118    107     70
D908V9, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STAU1 MUTATED        4      0      1      0      1
  STAU1 WILD-TYPE     84     66     44     55     46
D908V10, multiclass
        clus
vv       STAU1 MUTATED STAU1 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(909) Variable = DLL1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLL1 MUTATED        3      8      4      0
  DLL1 WILD-TYPE    201    129     43      3
D909V1, multiclass
        clus
vv       DLL1 MUTATED DLL1 WILD-TYPE
  CLUS_1            3            201
  CLUS_2            8            129
  CLUS_3            4             43
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLL1 MUTATED        3      5      0      2      3
  DLL1 WILD-TYPE     36     91     44     86     77
D909V2, multiclass
        clus
vv       DLL1 MUTATED DLL1 WILD-TYPE
  CLUS_1            3             36
  CLUS_2            5             91
  CLUS_3            0             44
  CLUS_4            2             86
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLL1 MUTATED        1      5      5      0      4
  DLL1 WILD-TYPE     25     74     68     82     54
D909V3, multiclass
        clus
vv       DLL1 MUTATED DLL1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            5             74
  CLUS_3            5             68
  CLUS_4            0             82
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLL1 MUTATED        4      6      3      2
  DLL1 WILD-TYPE    123     45     68     67
D909V4, multiclass
        clus
vv       DLL1 MUTATED DLL1 WILD-TYPE
  CLUS_1            4            123
  CLUS_2            6             45
  CLUS_3            3             68
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLL1 MUTATED        2      3      5      2      2
  DLL1 WILD-TYPE     82     82     80     67     45
D909V5, multiclass
        clus
vv       DLL1 MUTATED DLL1 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            3             82
  CLUS_3            5             80
  CLUS_4            2             67
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLL1 MUTATED        2      3      4      5
  DLL1 WILD-TYPE     93     71    117     75
D909V6, multiclass
        clus
vv       DLL1 MUTATED DLL1 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            3             71
  CLUS_3            4            117
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DLL1 MUTATED        3      5      1      2      2      2
  DLL1 WILD-TYPE     49     59     71    102     38     57
D909V7, multiclass
        clus
vv       DLL1 MUTATED DLL1 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            5             59
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            2             38
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLL1 MUTATED        9      3      3
  DLL1 WILD-TYPE    208     72     96
D909V8, multiclass
        clus
vv       DLL1 MUTATED DLL1 WILD-TYPE
  CLUS_1            9            208
  CLUS_2            3             72
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLL1 MUTATED        8      2      3
  DLL1 WILD-TYPE    113    106     69
D909V9, multiclass
        clus
vv       DLL1 MUTATED DLL1 WILD-TYPE
  CLUS_1            8            113
  CLUS_2            2            106
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLL1 MUTATED        5      1      3      2      2
  DLL1 WILD-TYPE     83     65     42     53     45
D909V10, multiclass
        clus
vv       DLL1 MUTATED DLL1 WILD-TYPE
  CLUS_1            5             83
  CLUS_2            1             65
  CLUS_3            3             42
  CLUS_4            2             53
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(910) Variable = E2F7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F7 MUTATED        4     15      1      0
  E2F7 WILD-TYPE    200    122     46      3
D910V1, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            4            200
  CLUS_2           15            122
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F7 MUTATED        1      7      5      2      2
  E2F7 WILD-TYPE     38     89     39     86     78
D910V2, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            7             89
  CLUS_3            5             39
  CLUS_4            2             86
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F7 MUTATED        1      5      5      1      4
  E2F7 WILD-TYPE     25     74     68     81     54
D910V3, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            5             74
  CLUS_3            5             68
  CLUS_4            1             81
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F7 MUTATED        5      4      5      2
  E2F7 WILD-TYPE    122     47     66     67
D910V4, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            5            122
  CLUS_2            4             47
  CLUS_3            5             66
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F7 MUTATED        3      5     10      1      1
  E2F7 WILD-TYPE     81     80     75     68     46
D910V5, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            3             81
  CLUS_2            5             80
  CLUS_3           10             75
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  E2F7 MUTATED        3      5      6      6
  E2F7 WILD-TYPE     92     69    115     74
D910V6, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            5             69
  CLUS_3            6            115
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  E2F7 MUTATED        4      8      2      3      0      3
  E2F7 WILD-TYPE     48     56     70    101     40     56
D910V7, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            8             56
  CLUS_3            2             70
  CLUS_4            3            101
  CLUS_5            0             40
  CLUS_6            3             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F7 MUTATED       14      2      4
  E2F7 WILD-TYPE    203     73     95
D910V8, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1           14            203
  CLUS_2            2             73
  CLUS_3            4             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  E2F7 MUTATED        6      2      6
  E2F7 WILD-TYPE    115    106     66
D910V9, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            6            115
  CLUS_2            2            106
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  E2F7 MUTATED        6      1      3      2      2
  E2F7 WILD-TYPE     82     65     42     53     45
D910V10, multiclass
        clus
vv       E2F7 MUTATED E2F7 WILD-TYPE
  CLUS_1            6             82
  CLUS_2            1             65
  CLUS_3            3             42
  CLUS_4            2             53
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(911) Variable = MYOCD MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOCD MUTATED        3     13      1      0
  MYOCD WILD-TYPE    201    124     46      3
D911V1, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             3             201
  CLUS_2            13             124
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYOCD MUTATED        2      5      5      1      2
  MYOCD WILD-TYPE     37     91     39     87     78
D911V2, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             2              37
  CLUS_2             5              91
  CLUS_3             5              39
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYOCD MUTATED        1      5      5      2      4
  MYOCD WILD-TYPE     25     74     68     80     54
D911V3, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             5              68
  CLUS_4             2              80
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOCD MUTATED        4      5      5      3
  MYOCD WILD-TYPE    123     46     66     66
D911V4, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             4             123
  CLUS_2             5              46
  CLUS_3             5              66
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYOCD MUTATED        1      3      8      2      3
  MYOCD WILD-TYPE     83     82     77     67     44
D911V5, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             8              77
  CLUS_4             2              67
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYOCD MUTATED        3      5      4      5
  MYOCD WILD-TYPE     92     69    117     75
D911V6, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             3              92
  CLUS_2             5              69
  CLUS_3             4             117
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYOCD MUTATED        2      6      1      4      3      1
  MYOCD WILD-TYPE     50     58     71    100     37     58
D911V7, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             2              50
  CLUS_2             6              58
  CLUS_3             1              71
  CLUS_4             4             100
  CLUS_5             3              37
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYOCD MUTATED       12      2      3
  MYOCD WILD-TYPE    205     73     96
D911V8, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1            12             205
  CLUS_2             2              73
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYOCD MUTATED        4      2      6
  MYOCD WILD-TYPE    117    106     66
D911V9, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             4             117
  CLUS_2             2             106
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYOCD MUTATED        4      0      2      2      4
  MYOCD WILD-TYPE     84     66     43     53     43
D911V10, multiclass
        clus
vv       MYOCD MUTATED MYOCD WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             2              53
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(912) Variable = EVI2B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EVI2B MUTATED        6      3      0      0
  EVI2B WILD-TYPE    198    134     47      3
D912V1, multiclass
        clus
vv       EVI2B MUTATED EVI2B WILD-TYPE
  CLUS_1             6             198
  CLUS_2             3             134
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EVI2B MUTATED        0      4      1      2      1
  EVI2B WILD-TYPE     39     92     43     86     79
D912V2, multiclass
        clus
vv       EVI2B MUTATED EVI2B WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             2              86
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EVI2B MUTATED        0      2      3      1      0
  EVI2B WILD-TYPE     26     77     70     81     58
D912V3, multiclass
        clus
vv       EVI2B MUTATED EVI2B WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EVI2B MUTATED        3      2      1      0
  EVI2B WILD-TYPE    124     49     70     69
D912V4, multiclass
        clus
vv       EVI2B MUTATED EVI2B WILD-TYPE
  CLUS_1             3             124
  CLUS_2             2              49
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EVI2B MUTATED        2      1      2      3      0
  EVI2B WILD-TYPE     82     84     83     66     47
D912V5, multiclass
        clus
vv       EVI2B MUTATED EVI2B WILD-TYPE
  CLUS_1             2              82
  CLUS_2             1              84
  CLUS_3             2              83
  CLUS_4             3              66
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EVI2B MUTATED        4      0      1      3
  EVI2B WILD-TYPE     91     74    120     77
D912V6, multiclass
        clus
vv       EVI2B MUTATED EVI2B WILD-TYPE
  CLUS_1             4              91
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EVI2B MUTATED        4      1      1      1      1      1
  EVI2B WILD-TYPE     48     63     71    103     39     58
D912V7, multiclass
        clus
vv       EVI2B MUTATED EVI2B WILD-TYPE
  CLUS_1             4              48
  CLUS_2             1              63
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EVI2B MUTATED        6      0      3
  EVI2B WILD-TYPE    211     75     96
D912V8, multiclass
        clus
vv       EVI2B MUTATED EVI2B WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EVI2B MUTATED        3      2      1
  EVI2B WILD-TYPE    118    106     71
D912V9, multiclass
        clus
vv       EVI2B MUTATED EVI2B WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EVI2B MUTATED        1      0      1      2      2
  EVI2B WILD-TYPE     87     66     44     53     45
D912V10, multiclass
        clus
vv       EVI2B MUTATED EVI2B WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             2              53
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(913) Variable = NRIP3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRIP3 MUTATED        0      7      0      0
  NRIP3 WILD-TYPE    204    130     47      3
D913V1, multiclass
        clus
vv       NRIP3 MUTATED NRIP3 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRIP3 MUTATED        1      3      0      0      0
  NRIP3 WILD-TYPE     38     93     44     88     80
D913V2, multiclass
        clus
vv       NRIP3 MUTATED NRIP3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRIP3 MUTATED        1      2      3      0      1
  NRIP3 WILD-TYPE     25     77     70     82     57
D913V3, multiclass
        clus
vv       NRIP3 MUTATED NRIP3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRIP3 MUTATED        2      4      1      0
  NRIP3 WILD-TYPE    125     47     70     69
D913V4, multiclass
        clus
vv       NRIP3 MUTATED NRIP3 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRIP3 MUTATED        0      2      3      1      1
  NRIP3 WILD-TYPE     84     83     82     68     46
D913V5, multiclass
        clus
vv       NRIP3 MUTATED NRIP3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRIP3 MUTATED        2      2      0      3
  NRIP3 WILD-TYPE     93     72    121     77
D913V6, multiclass
        clus
vv       NRIP3 MUTATED NRIP3 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NRIP3 MUTATED        1      4      0      2      0      0
  NRIP3 WILD-TYPE     51     60     72    102     40     59
D913V7, multiclass
        clus
vv       NRIP3 MUTATED NRIP3 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             4              60
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NRIP3 MUTATED        7      0      0
  NRIP3 WILD-TYPE    210     75     99
D913V8, multiclass
        clus
vv       NRIP3 MUTATED NRIP3 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NRIP3 MUTATED        2      0      2
  NRIP3 WILD-TYPE    119    108     70
D913V9, multiclass
        clus
vv       NRIP3 MUTATED NRIP3 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRIP3 MUTATED        3      0      1      0      0
  NRIP3 WILD-TYPE     85     66     44     55     47
D913V10, multiclass
        clus
vv       NRIP3 MUTATED NRIP3 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(914) Variable = ABCA7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        3     15      2      0
  ABCA7 WILD-TYPE    201    122     45      3
D914V1, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            15             122
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA7 MUTATED        4     10      1      1      2
  ABCA7 WILD-TYPE     35     86     43     87     78
D914V2, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             4              35
  CLUS_2            10              86
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA7 MUTATED        1      2      6      1      6
  ABCA7 WILD-TYPE     25     77     67     81     52
D914V3, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             6              67
  CLUS_4             1              81
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        5      8      1      2
  ABCA7 WILD-TYPE    122     43     70     67
D914V4, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             8              43
  CLUS_3             1              70
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA7 MUTATED        1      3      8      6      1
  ABCA7 WILD-TYPE     83     82     77     63     46
D914V5, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             8              77
  CLUS_4             6              63
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCA7 MUTATED        6      3      2      8
  ABCA7 WILD-TYPE     89     71    119     72
D914V6, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             3              71
  CLUS_3             2             119
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCA7 MUTATED        5      5      6      2      1      1
  ABCA7 WILD-TYPE     47     59     66    102     39     58
D914V7, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             5              59
  CLUS_3             6              66
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED       14      3      3
  ABCA7 WILD-TYPE    203     72     96
D914V8, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             3              72
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCA7 MUTATED        8      2      5
  ABCA7 WILD-TYPE    113    106     67
D914V9, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             8             113
  CLUS_2             2             106
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCA7 MUTATED        4      2      1      1      7
  ABCA7 WILD-TYPE     84     64     44     54     40
D914V10, multiclass
        clus
vv       ABCA7 MUTATED ABCA7 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             2              64
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(915) Variable = CWF19L2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CWF19L2 MUTATED        2     12      0      0
  CWF19L2 WILD-TYPE    202    125     47      3
D915V1, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               2               202
  CLUS_2              12               125
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CWF19L2 MUTATED        0      6      4      1      2
  CWF19L2 WILD-TYPE     39     90     40     87     78
D915V2, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               6                90
  CLUS_3               4                40
  CLUS_4               1                87
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CWF19L2 MUTATED        1      5      2      1      1
  CWF19L2 WILD-TYPE     25     74     71     81     57
D915V3, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               5                74
  CLUS_3               2                71
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CWF19L2 MUTATED        2      4      4      0
  CWF19L2 WILD-TYPE    125     47     67     69
D915V4, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               4                47
  CLUS_3               4                67
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CWF19L2 MUTATED        1      3      5      2      2
  CWF19L2 WILD-TYPE     83     82     80     67     45
D915V5, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               3                82
  CLUS_3               5                80
  CLUS_4               2                67
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CWF19L2 MUTATED        4      2      2      5
  CWF19L2 WILD-TYPE     91     72    119     75
D915V6, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               2                72
  CLUS_3               2               119
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CWF19L2 MUTATED        4      3      2      2      2      1
  CWF19L2 WILD-TYPE     48     61     70    102     38     58
D915V7, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               3                61
  CLUS_3               2                70
  CLUS_4               2               102
  CLUS_5               2                38
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CWF19L2 MUTATED       10      2      2
  CWF19L2 WILD-TYPE    207     73     97
D915V8, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1              10               207
  CLUS_2               2                73
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CWF19L2 MUTATED        6      1      5
  CWF19L2 WILD-TYPE    115    107     67
D915V9, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               6               115
  CLUS_2               1               107
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CWF19L2 MUTATED        4      1      2      0      5
  CWF19L2 WILD-TYPE     84     65     43     55     42
D915V10, multiclass
        clus
vv       CWF19L2 MUTATED CWF19L2 WILD-TYPE
  CLUS_1               4                84
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(916) Variable = FIBP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FIBP MUTATED        3      8      0      0
  FIBP WILD-TYPE    201    129     47      3
D916V1, multiclass
        clus
vv       FIBP MUTATED FIBP WILD-TYPE
  CLUS_1            3            201
  CLUS_2            8            129
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FIBP MUTATED        0      8      1      0      1
  FIBP WILD-TYPE     39     88     43     88     79
D916V2, multiclass
        clus
vv       FIBP MUTATED FIBP WILD-TYPE
  CLUS_1            0             39
  CLUS_2            8             88
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FIBP MUTATED        0      3      5      0      1
  FIBP WILD-TYPE     26     76     68     82     57
D916V3, multiclass
        clus
vv       FIBP MUTATED FIBP WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            5             68
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FIBP MUTATED        1      6      2      0
  FIBP WILD-TYPE    126     45     69     69
D916V4, multiclass
        clus
vv       FIBP MUTATED FIBP WILD-TYPE
  CLUS_1            1            126
  CLUS_2            6             45
  CLUS_3            2             69
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FIBP MUTATED        0      1      7      2      0
  FIBP WILD-TYPE     84     84     78     67     47
D916V5, multiclass
        clus
vv       FIBP MUTATED FIBP WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            7             78
  CLUS_4            2             67
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FIBP MUTATED        3      0      0      7
  FIBP WILD-TYPE     92     74    121     73
D916V6, multiclass
        clus
vv       FIBP MUTATED FIBP WILD-TYPE
  CLUS_1            3             92
  CLUS_2            0             74
  CLUS_3            0            121
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FIBP MUTATED        6      3      1      1      0      0
  FIBP WILD-TYPE     46     61     71    103     40     59
D916V7, multiclass
        clus
vv       FIBP MUTATED FIBP WILD-TYPE
  CLUS_1            6             46
  CLUS_2            3             61
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FIBP MUTATED        9      0      2
  FIBP WILD-TYPE    208     75     97
D916V8, multiclass
        clus
vv       FIBP MUTATED FIBP WILD-TYPE
  CLUS_1            9            208
  CLUS_2            0             75
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FIBP MUTATED        4      2      2
  FIBP WILD-TYPE    117    106     70
D916V9, multiclass
        clus
vv       FIBP MUTATED FIBP WILD-TYPE
  CLUS_1            4            117
  CLUS_2            2            106
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FIBP MUTATED        2      0      2      0      4
  FIBP WILD-TYPE     86     66     43     55     43
D916V10, multiclass
        clus
vv       FIBP MUTATED FIBP WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(917) Variable = PLEKHH3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHH3 MUTATED        0      8      2      0
  PLEKHH3 WILD-TYPE    204    129     45      3
D917V1, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               8               129
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHH3 MUTATED        0      5      0      1      2
  PLEKHH3 WILD-TYPE     39     91     44     87     78
D917V2, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               5                91
  CLUS_3               0                44
  CLUS_4               1                87
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHH3 MUTATED        2      4      1      0      1
  PLEKHH3 WILD-TYPE     24     75     72     82     57
D917V3, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               4                75
  CLUS_3               1                72
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHH3 MUTATED        3      3      2      0
  PLEKHH3 WILD-TYPE    124     48     69     69
D917V4, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               3                48
  CLUS_3               2                69
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHH3 MUTATED        0      0      5      0      3
  PLEKHH3 WILD-TYPE     84     85     80     69     44
D917V5, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               5                80
  CLUS_4               0                69
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PLEKHH3 MUTATED        2      0      2      4
  PLEKHH3 WILD-TYPE     93     74    119     76
D917V6, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               0                74
  CLUS_3               2               119
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PLEKHH3 MUTATED        2      5      3      0      0      0
  PLEKHH3 WILD-TYPE     50     59     69    104     40     59
D917V7, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               5                59
  CLUS_3               3                69
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHH3 MUTATED        8      1      1
  PLEKHH3 WILD-TYPE    209     74     98
D917V8, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               8               209
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PLEKHH3 MUTATED        2      0      6
  PLEKHH3 WILD-TYPE    119    108     66
D917V9, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               0               108
  CLUS_3               6                66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PLEKHH3 MUTATED        2      0      3      0      3
  PLEKHH3 WILD-TYPE     86     66     42     55     44
D917V10, multiclass
        clus
vv       PLEKHH3 MUTATED PLEKHH3 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               3                42
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(918) Variable = MAP7D2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D2 MUTATED        2      2      1      0
  MAP7D2 WILD-TYPE    202    135     46      3
D918V1, multiclass
        clus
vv       MAP7D2 MUTATED MAP7D2 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              2              135
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D2 MUTATED        1      1      0      1      1
  MAP7D2 WILD-TYPE     38     95     44     87     79
D918V2, multiclass
        clus
vv       MAP7D2 MUTATED MAP7D2 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              1               95
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D2 MUTATED        1      1      1      0      1
  MAP7D2 WILD-TYPE     25     78     72     82     57
D918V3, multiclass
        clus
vv       MAP7D2 MUTATED MAP7D2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D2 MUTATED        2      2      0      0
  MAP7D2 WILD-TYPE    125     49     71     69
D918V4, multiclass
        clus
vv       MAP7D2 MUTATED MAP7D2 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              2               49
  CLUS_3              0               71
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D2 MUTATED        1      1      2      0      0
  MAP7D2 WILD-TYPE     83     84     83     69     47
D918V5, multiclass
        clus
vv       MAP7D2 MUTATED MAP7D2 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              2               83
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP7D2 MUTATED        0      1      1      2
  MAP7D2 WILD-TYPE     95     73    120     78
D918V6, multiclass
        clus
vv       MAP7D2 MUTATED MAP7D2 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP7D2 MUTATED        1      2      0      1      0      1
  MAP7D2 WILD-TYPE     51     62     72    103     40     58
D918V7, multiclass
        clus
vv       MAP7D2 MUTATED MAP7D2 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D2 MUTATED        2      2      1
  MAP7D2 WILD-TYPE    215     73     98
D918V8, multiclass
        clus
vv       MAP7D2 MUTATED MAP7D2 WILD-TYPE
  CLUS_1              2              215
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP7D2 MUTATED        2      0      1
  MAP7D2 WILD-TYPE    119    108     71
D918V9, multiclass
        clus
vv       MAP7D2 MUTATED MAP7D2 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP7D2 MUTATED        0      0      0      2      1
  MAP7D2 WILD-TYPE     88     66     45     53     46
D918V10, multiclass
        clus
vv       MAP7D2 MUTATED MAP7D2 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              0               66
  CLUS_3              0               45
  CLUS_4              2               53
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(919) Variable = ZDHHC7 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC7 MUTATED        0      7      0      0
  ZDHHC7 WILD-TYPE    204    130     47      3
D919V1, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZDHHC7 MUTATED        0      6      0      0      0
  ZDHHC7 WILD-TYPE     39     90     44     88     80
D919V2, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              6               90
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZDHHC7 MUTATED        0      2      2      0      1
  ZDHHC7 WILD-TYPE     26     77     71     82     57
D919V3, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC7 MUTATED        2      2      1      0
  ZDHHC7 WILD-TYPE    125     49     70     69
D919V4, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZDHHC7 MUTATED        0      1      4      2      0
  ZDHHC7 WILD-TYPE     84     84     81     67     47
D919V5, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              4               81
  CLUS_4              2               67
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZDHHC7 MUTATED        3      1      0      3
  ZDHHC7 WILD-TYPE     92     73    121     77
D919V6, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZDHHC7 MUTATED        3      2      0      2      0      0
  ZDHHC7 WILD-TYPE     49     62     72    102     40     59
D919V7, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZDHHC7 MUTATED        6      1      0
  ZDHHC7 WILD-TYPE    211     74     99
D919V8, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZDHHC7 MUTATED        3      2      1
  ZDHHC7 WILD-TYPE    118    106     71
D919V9, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              2              106
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZDHHC7 MUTATED        2      1      1      0      2
  ZDHHC7 WILD-TYPE     86     65     44     55     45
D919V10, multiclass
        clus
vv       ZDHHC7 MUTATED ZDHHC7 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(920) Variable = HTRA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        1      6      0      0
  HTRA2 WILD-TYPE    203    131     47      3
D920V1, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             6             131
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTRA2 MUTATED        0      4      3      0      0
  HTRA2 WILD-TYPE     39     92     41     88     80
D920V2, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTRA2 MUTATED        0      3      1      0      1
  HTRA2 WILD-TYPE     26     76     72     82     57
D920V3, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        0      3      2      0
  HTRA2 WILD-TYPE    127     48     69     69
D920V4, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             3              48
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTRA2 MUTATED        0      0      5      2      0
  HTRA2 WILD-TYPE     84     85     80     67     47
D920V5, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             5              80
  CLUS_4             2              67
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HTRA2 MUTATED        3      0      1      3
  HTRA2 WILD-TYPE     92     74    120     77
D920V6, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HTRA2 MUTATED        3      2      2      0      0      0
  HTRA2 WILD-TYPE     49     62     70    104     40     59
D920V7, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             2              62
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        6      0      1
  HTRA2 WILD-TYPE    211     75     98
D920V8, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HTRA2 MUTATED        3      0      2
  HTRA2 WILD-TYPE    118    108     70
D920V9, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HTRA2 MUTATED        0      0      2      0      3
  HTRA2 WILD-TYPE     88     66     43     55     44
D920V10, multiclass
        clus
vv       HTRA2 MUTATED HTRA2 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(921) Variable = INSIG2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSIG2 MUTATED        0      7      0      0
  INSIG2 WILD-TYPE    204    130     47      3
D921V1, multiclass
        clus
vv       INSIG2 MUTATED INSIG2 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INSIG2 MUTATED        0      5      1      0      0
  INSIG2 WILD-TYPE     39     91     43     88     80
D921V2, multiclass
        clus
vv       INSIG2 MUTATED INSIG2 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INSIG2 MUTATED        0      1      4      0      1
  INSIG2 WILD-TYPE     26     78     69     82     57
D921V3, multiclass
        clus
vv       INSIG2 MUTATED INSIG2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              4               69
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSIG2 MUTATED        2      4      0      0
  INSIG2 WILD-TYPE    125     47     71     69
D921V4, multiclass
        clus
vv       INSIG2 MUTATED INSIG2 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              4               47
  CLUS_3              0               71
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INSIG2 MUTATED        0      1      3      1      1
  INSIG2 WILD-TYPE     84     84     82     68     46
D921V5, multiclass
        clus
vv       INSIG2 MUTATED INSIG2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              3               82
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSIG2 MUTATED        3      1      0      2
  INSIG2 WILD-TYPE     92     73    121     78
D921V6, multiclass
        clus
vv       INSIG2 MUTATED INSIG2 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  INSIG2 MUTATED        2      3      1      1      0      0
  INSIG2 WILD-TYPE     50     61     71    103     40     59
D921V7, multiclass
        clus
vv       INSIG2 MUTATED INSIG2 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INSIG2 MUTATED        5      1      1
  INSIG2 WILD-TYPE    212     74     98
D921V8, multiclass
        clus
vv       INSIG2 MUTATED INSIG2 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  INSIG2 MUTATED        2      1      2
  INSIG2 WILD-TYPE    119    107     70
D921V9, multiclass
        clus
vv       INSIG2 MUTATED INSIG2 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INSIG2 MUTATED        2      1      1      0      1
  INSIG2 WILD-TYPE     86     65     44     55     46
D921V10, multiclass
        clus
vv       INSIG2 MUTATED INSIG2 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(922) Variable = CLSTN1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLSTN1 MUTATED        1      6      2      0
  CLSTN1 WILD-TYPE    203    131     45      3
D922V1, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              6              131
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLSTN1 MUTATED        0      6      2      1      0
  CLSTN1 WILD-TYPE     39     90     42     87     80
D922V2, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              6               90
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLSTN1 MUTATED        0      2      2      1      4
  CLSTN1 WILD-TYPE     26     77     71     81     54
D922V3, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLSTN1 MUTATED        2      4      1      2
  CLSTN1 WILD-TYPE    125     47     70     67
D922V4, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              4               47
  CLUS_3              1               70
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLSTN1 MUTATED        1      2      4      1      1
  CLSTN1 WILD-TYPE     83     83     81     68     46
D922V5, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLSTN1 MUTATED        1      2      2      4
  CLSTN1 WILD-TYPE     94     72    119     76
D922V6, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              2              119
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLSTN1 MUTATED        3      4      2      0      0      1
  CLSTN1 WILD-TYPE     49     60     70    104     40     58
D922V7, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              4               60
  CLUS_3              2               70
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLSTN1 MUTATED        9      0      1
  CLSTN1 WILD-TYPE    208     75     98
D922V8, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CLSTN1 MUTATED        5      0      4
  CLSTN1 WILD-TYPE    116    108     68
D922V9, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              0              108
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLSTN1 MUTATED        2      0      2      1      4
  CLSTN1 WILD-TYPE     86     66     43     54     43
D922V10, multiclass
        clus
vv       CLSTN1 MUTATED CLSTN1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(923) Variable = HNF1B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        0      3      2      0
  HNF1B WILD-TYPE    204    134     45      3
D923V1, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             0             204
  CLUS_2             3             134
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNF1B MUTATED        0      2      2      0      0
  HNF1B WILD-TYPE     39     94     42     88     80
D923V2, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             0              39
  CLUS_2             2              94
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNF1B MUTATED        0      1      0      1      3
  HNF1B WILD-TYPE     26     78     73     81     55
D923V3, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             0              73
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        0      4      0      1
  HNF1B WILD-TYPE    127     47     71     68
D923V4, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             0             127
  CLUS_2             4              47
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNF1B MUTATED        0      0      4      0      1
  HNF1B WILD-TYPE     84     85     81     69     46
D923V5, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             4              81
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HNF1B MUTATED        0      1      1      3
  HNF1B WILD-TYPE     95     73    120     77
D923V6, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             0              95
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HNF1B MUTATED        1      2      2      0      0      0
  HNF1B WILD-TYPE     51     62     70    104     40     59
D923V7, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1              51
  CLUS_2             2              62
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HNF1B MUTATED        5      0      0
  HNF1B WILD-TYPE    212     75     99
D923V8, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             5             212
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HNF1B MUTATED        1      0      3
  HNF1B WILD-TYPE    120    108     69
D923V9, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             1             120
  CLUS_2             0             108
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HNF1B MUTATED        0      0      2      0      2
  HNF1B WILD-TYPE     88     66     43     55     45
D923V10, multiclass
        clus
vv       HNF1B MUTATED HNF1B WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(924) Variable = IBTK MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IBTK MUTATED        2     16      0      0
  IBTK WILD-TYPE    202    121     47      3
D924V1, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            2            202
  CLUS_2           16            121
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IBTK MUTATED        1      8      3      1      1
  IBTK WILD-TYPE     38     88     41     87     79
D924V2, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            1             38
  CLUS_2            8             88
  CLUS_3            3             41
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IBTK MUTATED        0      9      4      3      2
  IBTK WILD-TYPE     26     70     69     79     56
D924V3, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            0             26
  CLUS_2            9             70
  CLUS_3            4             69
  CLUS_4            3             79
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IBTK MUTATED        2      8      5      3
  IBTK WILD-TYPE    125     43     66     66
D924V4, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            2            125
  CLUS_2            8             43
  CLUS_3            5             66
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IBTK MUTATED        0      4     10      1      1
  IBTK WILD-TYPE     84     81     75     68     46
D924V5, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            0             84
  CLUS_2            4             81
  CLUS_3           10             75
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IBTK MUTATED        3      6      1      6
  IBTK WILD-TYPE     92     68    120     74
D924V6, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            3             92
  CLUS_2            6             68
  CLUS_3            1            120
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IBTK MUTATED        3     10      2      3      1      0
  IBTK WILD-TYPE     49     54     70    101     39     59
D924V7, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            3             49
  CLUS_2           10             54
  CLUS_3            2             70
  CLUS_4            3            101
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IBTK MUTATED       14      4      1
  IBTK WILD-TYPE    203     71     98
D924V8, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1           14            203
  CLUS_2            4             71
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IBTK MUTATED        4      2      8
  IBTK WILD-TYPE    117    106     64
D924V9, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            4            117
  CLUS_2            2            106
  CLUS_3            8             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IBTK MUTATED        2      2      6      0      4
  IBTK WILD-TYPE     86     64     39     55     43
D924V10, multiclass
        clus
vv       IBTK MUTATED IBTK WILD-TYPE
  CLUS_1            2             86
  CLUS_2            2             64
  CLUS_3            6             39
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(925) Variable = SALL2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SALL2 MUTATED        5      8      1      0
  SALL2 WILD-TYPE    199    129     46      3
D925V1, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             5             199
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SALL2 MUTATED        2      9      0      3      0
  SALL2 WILD-TYPE     37     87     44     85     80
D925V2, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             9              87
  CLUS_3             0              44
  CLUS_4             3              85
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SALL2 MUTATED        0      1      8      1      3
  SALL2 WILD-TYPE     26     78     65     81     55
D925V3, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             8              65
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SALL2 MUTATED        5      6      0      2
  SALL2 WILD-TYPE    122     45     71     67
D925V4, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             6              45
  CLUS_3             0              71
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SALL2 MUTATED        2      2      4      4      2
  SALL2 WILD-TYPE     82     83     81     65     45
D925V5, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             2              83
  CLUS_3             4              81
  CLUS_4             4              65
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SALL2 MUTATED        5      2      1      6
  SALL2 WILD-TYPE     90     72    120     74
D925V6, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SALL2 MUTATED        5      0      2      5      1      1
  SALL2 WILD-TYPE     47     64     70     99     39     58
D925V7, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             0              64
  CLUS_3             2              70
  CLUS_4             5              99
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SALL2 MUTATED       10      2      2
  SALL2 WILD-TYPE    207     73     97
D925V8, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SALL2 MUTATED       10      2      1
  SALL2 WILD-TYPE    111    106     71
D925V9, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1            10             111
  CLUS_2             2             106
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SALL2 MUTATED        5      2      1      1      4
  SALL2 WILD-TYPE     83     64     44     54     43
D925V10, multiclass
        clus
vv       SALL2 MUTATED SALL2 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             2              64
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(926) Variable = ELMO1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELMO1 MUTATED        4     14      5      0
  ELMO1 WILD-TYPE    200    123     42      3
D926V1, multiclass
        clus
vv       ELMO1 MUTATED ELMO1 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            14             123
  CLUS_3             5              42
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELMO1 MUTATED        3      8      3      2      2
  ELMO1 WILD-TYPE     36     88     41     86     78
D926V2, multiclass
        clus
vv       ELMO1 MUTATED ELMO1 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             8              88
  CLUS_3             3              41
  CLUS_4             2              86
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELMO1 MUTATED        3      8      4      1      5
  ELMO1 WILD-TYPE     23     71     69     81     53
D926V3, multiclass
        clus
vv       ELMO1 MUTATED ELMO1 WILD-TYPE
  CLUS_1             3              23
  CLUS_2             8              71
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELMO1 MUTATED        5      9      4      3
  ELMO1 WILD-TYPE    122     42     67     66
D926V4, multiclass
        clus
vv       ELMO1 MUTATED ELMO1 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             9              42
  CLUS_3             4              67
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELMO1 MUTATED        2      2     12      3      3
  ELMO1 WILD-TYPE     82     83     73     66     44
D926V5, multiclass
        clus
vv       ELMO1 MUTATED ELMO1 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             2              83
  CLUS_3            12              73
  CLUS_4             3              66
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELMO1 MUTATED        4      4      5      9
  ELMO1 WILD-TYPE     91     70    116     71
D926V6, multiclass
        clus
vv       ELMO1 MUTATED ELMO1 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             4              70
  CLUS_3             5             116
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ELMO1 MUTATED        3      9      4      3      3      1
  ELMO1 WILD-TYPE     49     55     68    101     37     58
D926V7, multiclass
        clus
vv       ELMO1 MUTATED ELMO1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             9              55
  CLUS_3             4              68
  CLUS_4             3             101
  CLUS_5             3              37
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ELMO1 MUTATED       19      2      2
  ELMO1 WILD-TYPE    198     73     97
D926V8, multiclass
        clus
vv       ELMO1 MUTATED ELMO1 WILD-TYPE
  CLUS_1            19             198
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ELMO1 MUTATED        6      5      5
  ELMO1 WILD-TYPE    115    103     67
D926V9, multiclass
        clus
vv       ELMO1 MUTATED ELMO1 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             5             103
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELMO1 MUTATED        6      2      4      1      3
  ELMO1 WILD-TYPE     82     64     41     54     44
D926V10, multiclass
        clus
vv       ELMO1 MUTATED ELMO1 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             2              64
  CLUS_3             4              41
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(927) Variable = BRAF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED        3     14      1      0
  BRAF WILD-TYPE    201    123     46      3
D927V1, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            3            201
  CLUS_2           14            123
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRAF MUTATED        0      7      5      2      1
  BRAF WILD-TYPE     39     89     39     86     79
D927V2, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            0             39
  CLUS_2            7             89
  CLUS_3            5             39
  CLUS_4            2             86
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRAF MUTATED        2      5      4      1      2
  BRAF WILD-TYPE     24     74     69     81     56
D927V3, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2             24
  CLUS_2            5             74
  CLUS_3            4             69
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED        5      4      4      1
  BRAF WILD-TYPE    122     47     67     68
D927V4, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            5            122
  CLUS_2            4             47
  CLUS_3            4             67
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRAF MUTATED        0      2      9      4      1
  BRAF WILD-TYPE     84     83     76     65     46
D927V5, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            9             76
  CLUS_4            4             65
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED        5      3      2      6
  BRAF WILD-TYPE     90     71    119     74
D927V6, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            5             90
  CLUS_2            3             71
  CLUS_3            2            119
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRAF MUTATED        2      7      2      5      2      0
  BRAF WILD-TYPE     50     57     70     99     38     59
D927V7, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2             50
  CLUS_2            7             57
  CLUS_3            2             70
  CLUS_4            5             99
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED       15      1      2
  BRAF WILD-TYPE    202     74     97
D927V8, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           15            202
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        4      4      5
  BRAF WILD-TYPE    117    104     67
D927V9, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            4            117
  CLUS_2            4            104
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRAF MUTATED        5      1      3      1      3
  BRAF WILD-TYPE     83     65     42     54     44
D927V10, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            5             83
  CLUS_2            1             65
  CLUS_3            3             42
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(928) Variable = NFAT5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFAT5 MUTATED        2      8      2      0
  NFAT5 WILD-TYPE    202    129     45      3
D928V1, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             8             129
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFAT5 MUTATED        1      5      1      0      0
  NFAT5 WILD-TYPE     38     91     43     88     80
D928V2, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFAT5 MUTATED        0      4      2      1      4
  NFAT5 WILD-TYPE     26     75     71     81     54
D928V3, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFAT5 MUTATED        5      4      2      0
  NFAT5 WILD-TYPE    122     47     69     69
D928V4, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFAT5 MUTATED        0      3      5      0      1
  NFAT5 WILD-TYPE     84     82     80     69     46
D928V5, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NFAT5 MUTATED        3      1      0      5
  NFAT5 WILD-TYPE     92     73    121     75
D928V6, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NFAT5 MUTATED        0      7      1      3      0      1
  NFAT5 WILD-TYPE     52     57     71    101     40     58
D928V7, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             7              57
  CLUS_3             1              71
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFAT5 MUTATED       10      2      0
  NFAT5 WILD-TYPE    207     73     99
D928V8, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             2              73
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NFAT5 MUTATED        0      2      4
  NFAT5 WILD-TYPE    121    106     68
D928V9, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             0             121
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NFAT5 MUTATED        0      2      2      1      1
  NFAT5 WILD-TYPE     88     64     43     54     46
D928V10, multiclass
        clus
vv       NFAT5 MUTATED NFAT5 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             2              64
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(929) Variable = ESRP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESRP2 MUTATED        1      7      0      0
  ESRP2 WILD-TYPE    203    130     47      3
D929V1, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESRP2 MUTATED        0      5      2      0      1
  ESRP2 WILD-TYPE     39     91     42     88     79
D929V2, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESRP2 MUTATED        1      2      3      0      2
  ESRP2 WILD-TYPE     25     77     70     82     56
D929V3, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESRP2 MUTATED        1      4      2      1
  ESRP2 WILD-TYPE    126     47     69     68
D929V4, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESRP2 MUTATED        0      3      4      0      1
  ESRP2 WILD-TYPE     84     82     81     69     46
D929V5, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             4              81
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ESRP2 MUTATED        1      2      1      4
  ESRP2 WILD-TYPE     94     72    120     76
D929V6, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ESRP2 MUTATED        2      3      2      1      0      0
  ESRP2 WILD-TYPE     50     61     70    103     40     59
D929V7, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESRP2 MUTATED        7      1      0
  ESRP2 WILD-TYPE    210     74     99
D929V8, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ESRP2 MUTATED        2      1      3
  ESRP2 WILD-TYPE    119    107     69
D929V9, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ESRP2 MUTATED        2      1      2      0      1
  ESRP2 WILD-TYPE     86     65     43     55     46
D929V10, multiclass
        clus
vv       ESRP2 MUTATED ESRP2 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(930) Variable = DHX36 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX36 MUTATED        4     15      1      0
  DHX36 WILD-TYPE    200    122     46      3
D930V1, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            15             122
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX36 MUTATED        2      8      1      0      2
  DHX36 WILD-TYPE     37     88     43     88     78
D930V2, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             8              88
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX36 MUTATED        2      3      4      3      5
  DHX36 WILD-TYPE     24     76     69     79     53
D930V3, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             3              76
  CLUS_3             4              69
  CLUS_4             3              79
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX36 MUTATED        7      7      1      2
  DHX36 WILD-TYPE    120     44     70     67
D930V4, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             7             120
  CLUS_2             7              44
  CLUS_3             1              70
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX36 MUTATED        0      5      6      3      4
  DHX36 WILD-TYPE     84     80     79     66     43
D930V5, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             5              80
  CLUS_3             6              79
  CLUS_4             3              66
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX36 MUTATED        7      4      0      7
  DHX36 WILD-TYPE     88     70    121     73
D930V6, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             4              70
  CLUS_3             0             121
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DHX36 MUTATED        3      8      3      4      1      1
  DHX36 WILD-TYPE     49     56     69    100     39     58
D930V7, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             8              56
  CLUS_3             3              69
  CLUS_4             4             100
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX36 MUTATED       15      4      1
  DHX36 WILD-TYPE    202     71     98
D930V8, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1            15             202
  CLUS_2             4              71
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX36 MUTATED        4      4      4
  DHX36 WILD-TYPE    117    104     68
D930V9, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             4             104
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX36 MUTATED        2      4      2      1      3
  DHX36 WILD-TYPE     86     62     43     54     44
D930V10, multiclass
        clus
vv       DHX36 MUTATED DHX36 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             4              62
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(931) Variable = ZCCHC6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC6 MUTATED        1      8      3      0
  ZCCHC6 WILD-TYPE    203    129     44      3
D931V1, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              8              129
  CLUS_3              3               44
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC6 MUTATED        3      5      1      0      0
  ZCCHC6 WILD-TYPE     36     91     43     88     80
D931V2, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              3               36
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC6 MUTATED        0      3      2      1      5
  ZCCHC6 WILD-TYPE     26     76     71     81     53
D931V3, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              5               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC6 MUTATED        3      7      0      1
  ZCCHC6 WILD-TYPE    124     44     71     68
D931V4, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              7               44
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC6 MUTATED        0      2      6      2      1
  ZCCHC6 WILD-TYPE     84     83     79     67     46
D931V5, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              6               79
  CLUS_4              2               67
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZCCHC6 MUTATED        4      2      0      5
  ZCCHC6 WILD-TYPE     91     72    121     75
D931V6, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZCCHC6 MUTATED        2      6      2      1      1      0
  ZCCHC6 WILD-TYPE     50     58     70    103     39     59
D931V7, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              6               58
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZCCHC6 MUTATED       12      0      0
  ZCCHC6 WILD-TYPE    205     75     99
D931V8, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1             12              205
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZCCHC6 MUTATED        3      0      5
  ZCCHC6 WILD-TYPE    118    108     67
D931V9, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZCCHC6 MUTATED        2      0      3      0      3
  ZCCHC6 WILD-TYPE     86     66     42     55     44
D931V10, multiclass
        clus
vv       ZCCHC6 MUTATED ZCCHC6 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(932) Variable = C8ORF38 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C8ORF38 MUTATED        1      6      1      0
  C8ORF38 WILD-TYPE    203    131     46      3
D932V1, multiclass
        clus
vv       C8ORF38 MUTATED C8ORF38 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               6               131
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C8ORF38 MUTATED        2      2      1      1      0
  C8ORF38 WILD-TYPE     37     94     43     87     80
D932V2, multiclass
        clus
vv       C8ORF38 MUTATED C8ORF38 WILD-TYPE
  CLUS_1               2                37
  CLUS_2               2                94
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C8ORF38 MUTATED        0      3      2      1      0
  C8ORF38 WILD-TYPE     26     76     71     81     58
D932V3, multiclass
        clus
vv       C8ORF38 MUTATED C8ORF38 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               3                76
  CLUS_3               2                71
  CLUS_4               1                81
  CLUS_5               0                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C8ORF38 MUTATED        1      1      3      1
  C8ORF38 WILD-TYPE    126     50     68     68
D932V4, multiclass
        clus
vv       C8ORF38 MUTATED C8ORF38 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               1                50
  CLUS_3               3                68
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C8ORF38 MUTATED        1      2      3      1      1
  C8ORF38 WILD-TYPE     83     83     82     68     46
D932V5, multiclass
        clus
vv       C8ORF38 MUTATED C8ORF38 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               2                83
  CLUS_3               3                82
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C8ORF38 MUTATED        2      2      1      3
  C8ORF38 WILD-TYPE     93     72    120     77
D932V6, multiclass
        clus
vv       C8ORF38 MUTATED C8ORF38 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               2                72
  CLUS_3               1               120
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C8ORF38 MUTATED        0      4      1      0      2      1
  C8ORF38 WILD-TYPE     52     60     71    104     38     58
D932V7, multiclass
        clus
vv       C8ORF38 MUTATED C8ORF38 WILD-TYPE
  CLUS_1               0                52
  CLUS_2               4                60
  CLUS_3               1                71
  CLUS_4               0               104
  CLUS_5               2                38
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C8ORF38 MUTATED        6      0      2
  C8ORF38 WILD-TYPE    211     75     97
D932V8, multiclass
        clus
vv       C8ORF38 MUTATED C8ORF38 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               0                75
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C8ORF38 MUTATED        3      1      1
  C8ORF38 WILD-TYPE    118    107     71
D932V9, multiclass
        clus
vv       C8ORF38 MUTATED C8ORF38 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               1               107
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C8ORF38 MUTATED        3      0      0      0      2
  C8ORF38 WILD-TYPE     85     66     45     55     45
D932V10, multiclass
        clus
vv       C8ORF38 MUTATED C8ORF38 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(933) Variable = NTAN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTAN1 MUTATED        0      5      0      0
  NTAN1 WILD-TYPE    204    132     47      3
D933V1, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             5             132
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NTAN1 MUTATED        0      3      0      0      1
  NTAN1 WILD-TYPE     39     93     44     88     79
D933V2, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NTAN1 MUTATED        1      1      2      0      0
  NTAN1 WILD-TYPE     25     78     71     82     58
D933V3, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTAN1 MUTATED        1      2      1      0
  NTAN1 WILD-TYPE    126     49     70     69
D933V4, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             2              49
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NTAN1 MUTATED        0      0      5      0      0
  NTAN1 WILD-TYPE     84     85     80     69     47
D933V5, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NTAN1 MUTATED        1      1      1      2
  NTAN1 WILD-TYPE     94     73    120     78
D933V6, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NTAN1 MUTATED        1      3      1      0      0      0
  NTAN1 WILD-TYPE     51     61     71    104     40     59
D933V7, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTAN1 MUTATED        4      0      1
  NTAN1 WILD-TYPE    213     75     98
D933V8, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NTAN1 MUTATED        1      0      2
  NTAN1 WILD-TYPE    120    108     70
D933V9, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NTAN1 MUTATED        1      0      2      0      0
  NTAN1 WILD-TYPE     87     66     43     55     47
D933V10, multiclass
        clus
vv       NTAN1 MUTATED NTAN1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(934) Variable = MLXIPL MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLXIPL MUTATED        2     10      1      0
  MLXIPL WILD-TYPE    202    127     46      3
D934V1, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              2              202
  CLUS_2             10              127
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLXIPL MUTATED        1      6      0      0      3
  MLXIPL WILD-TYPE     38     90     44     88     77
D934V2, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               90
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLXIPL MUTATED        1      1      4      1      4
  MLXIPL WILD-TYPE     25     78     69     81     54
D934V3, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLXIPL MUTATED        4      6      1      0
  MLXIPL WILD-TYPE    123     45     70     69
D934V4, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              4              123
  CLUS_2              6               45
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLXIPL MUTATED        1      3      6      1      2
  MLXIPL WILD-TYPE     83     82     79     68     45
D934V5, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               82
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MLXIPL MUTATED        5      2      3      3
  MLXIPL WILD-TYPE     90     72    118     77
D934V6, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              5               90
  CLUS_2              2               72
  CLUS_3              3              118
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MLXIPL MUTATED        3      6      0      2      1      1
  MLXIPL WILD-TYPE     49     58     72    102     39     58
D934V7, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              3               49
  CLUS_2              6               58
  CLUS_3              0               72
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLXIPL MUTATED        7      3      3
  MLXIPL WILD-TYPE    210     72     96
D934V8, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              7              210
  CLUS_2              3               72
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MLXIPL MUTATED        3      3      3
  MLXIPL WILD-TYPE    118    105     69
D934V9, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              3              118
  CLUS_2              3              105
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MLXIPL MUTATED        2      2      3      1      1
  MLXIPL WILD-TYPE     86     64     42     54     46
D934V10, multiclass
        clus
vv       MLXIPL MUTATED MLXIPL WILD-TYPE
  CLUS_1              2               86
  CLUS_2              2               64
  CLUS_3              3               42
  CLUS_4              1               54
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(935) Variable = SFRS18 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS18 MUTATED        1     13      1      0
  SFRS18 WILD-TYPE    203    124     46      3
D935V1, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             13              124
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS18 MUTATED        1      7      2      1      0
  SFRS18 WILD-TYPE     38     89     42     87     80
D935V2, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              7               89
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS18 MUTATED        0      7      4      0      2
  SFRS18 WILD-TYPE     26     72     69     82     56
D935V3, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              7               72
  CLUS_3              4               69
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS18 MUTATED        2      8      3      0
  SFRS18 WILD-TYPE    125     43     68     69
D935V4, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              8               43
  CLUS_3              3               68
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS18 MUTATED        1      2      7      1      3
  SFRS18 WILD-TYPE     83     83     78     68     44
D935V5, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              7               78
  CLUS_4              1               68
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS18 MUTATED        2      1      2      9
  SFRS18 WILD-TYPE     93     73    119     71
D935V6, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              9               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SFRS18 MUTATED        7      5      1      1      0      1
  SFRS18 WILD-TYPE     45     59     71    103     40     58
D935V7, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              7               45
  CLUS_2              5               59
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFRS18 MUTATED       14      0      1
  SFRS18 WILD-TYPE    203     75     98
D935V8, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1             14              203
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SFRS18 MUTATED        6      0      2
  SFRS18 WILD-TYPE    115    108     70
D935V9, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS18 MUTATED        3      0      2      0      3
  SFRS18 WILD-TYPE     85     66     43     55     44
D935V10, multiclass
        clus
vv       SFRS18 MUTATED SFRS18 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(936) Variable = PADI3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PADI3 MUTATED        4      9      0      0
  PADI3 WILD-TYPE    200    128     47      3
D936V1, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             4             200
  CLUS_2             9             128
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PADI3 MUTATED        0      8      2      0      0
  PADI3 WILD-TYPE     39     88     42     88     80
D936V2, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             8              88
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PADI3 MUTATED        1      5      5      1      1
  PADI3 WILD-TYPE     25     74     68     81     57
D936V3, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PADI3 MUTATED        4      7      1      1
  PADI3 WILD-TYPE    123     44     70     68
D936V4, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             7              44
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PADI3 MUTATED        0      2      7      2      1
  PADI3 WILD-TYPE     84     83     78     67     46
D936V5, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             7              78
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PADI3 MUTATED        4      2      1      5
  PADI3 WILD-TYPE     91     72    120     75
D936V6, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PADI3 MUTATED        1      6      4      1      1      0
  PADI3 WILD-TYPE     51     58     68    103     39     59
D936V7, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             6              58
  CLUS_3             4              68
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PADI3 MUTATED       10      2      1
  PADI3 WILD-TYPE    207     73     98
D936V8, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PADI3 MUTATED        2      1      5
  PADI3 WILD-TYPE    119    107     67
D936V9, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PADI3 MUTATED        2      1      3      0      2
  PADI3 WILD-TYPE     86     65     42     55     45
D936V10, multiclass
        clus
vv       PADI3 MUTATED PADI3 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(937) Variable = SLC38A6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A6 MUTATED        2      5      1      0
  SLC38A6 WILD-TYPE    202    132     46      3
D937V1, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               5               132
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC38A6 MUTATED        0      5      2      0      1
  SLC38A6 WILD-TYPE     39     91     42     88     79
D937V2, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               5                91
  CLUS_3               2                42
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC38A6 MUTATED        1      3      1      0      1
  SLC38A6 WILD-TYPE     25     76     72     82     57
D937V3, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                76
  CLUS_3               1                72
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A6 MUTATED        1      3      2      0
  SLC38A6 WILD-TYPE    126     48     69     69
D937V4, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               3                48
  CLUS_3               2                69
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC38A6 MUTATED        0      0      6      1      0
  SLC38A6 WILD-TYPE     84     85     79     68     47
D937V5, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               6                79
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A6 MUTATED        2      0      1      4
  SLC38A6 WILD-TYPE     93     74    120     76
D937V6, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               0                74
  CLUS_3               1               120
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC38A6 MUTATED        3      2      1      2      0      0
  SLC38A6 WILD-TYPE     49     62     71    102     40     59
D937V7, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               2                62
  CLUS_3               1                71
  CLUS_4               2               102
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC38A6 MUTATED        7      1      0
  SLC38A6 WILD-TYPE    210     74     99
D937V8, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               7               210
  CLUS_2               1                74
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC38A6 MUTATED        4      0      4
  SLC38A6 WILD-TYPE    117    108     68
D937V9, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               0               108
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC38A6 MUTATED        2      1      2      0      3
  SLC38A6 WILD-TYPE     86     65     43     55     44
D937V10, multiclass
        clus
vv       SLC38A6 MUTATED SLC38A6 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(938) Variable = RGS22 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS22 MUTATED        7     14      0      0
  RGS22 WILD-TYPE    197    123     47      3
D938V1, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             7             197
  CLUS_2            14             123
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS22 MUTATED        2      9      5      3      0
  RGS22 WILD-TYPE     37     87     39     85     80
D938V2, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             9              87
  CLUS_3             5              39
  CLUS_4             3              85
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS22 MUTATED        1      8      4      1      3
  RGS22 WILD-TYPE     25     71     69     81     55
D938V3, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             8              71
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS22 MUTATED        1      9      6      1
  RGS22 WILD-TYPE    126     42     65     68
D938V4, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             9              42
  CLUS_3             6              65
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS22 MUTATED        3      2     10      2      2
  RGS22 WILD-TYPE     81     83     75     67     45
D938V5, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             2              83
  CLUS_3            10              75
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RGS22 MUTATED        6      3      2      8
  RGS22 WILD-TYPE     89     71    119     72
D938V6, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             3              71
  CLUS_3             2             119
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RGS22 MUTATED        4      9      1      4      1      2
  RGS22 WILD-TYPE     48     55     71    100     39     57
D938V7, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             9              55
  CLUS_3             1              71
  CLUS_4             4             100
  CLUS_5             1              39
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGS22 MUTATED       15      2      4
  RGS22 WILD-TYPE    202     73     95
D938V8, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1            15             202
  CLUS_2             2              73
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RGS22 MUTATED        7      3      8
  RGS22 WILD-TYPE    114    105     64
D938V9, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             3             105
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RGS22 MUTATED        4      2      7      2      3
  RGS22 WILD-TYPE     84     64     38     53     44
D938V10, multiclass
        clus
vv       RGS22 MUTATED RGS22 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             2              64
  CLUS_3             7              38
  CLUS_4             2              53
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(939) Variable = EVI5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EVI5 MUTATED        1      8      1      0
  EVI5 WILD-TYPE    203    129     46      3
D939V1, multiclass
        clus
vv       EVI5 MUTATED EVI5 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            8            129
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EVI5 MUTATED        1      1      4      2      1
  EVI5 WILD-TYPE     38     95     40     86     79
D939V2, multiclass
        clus
vv       EVI5 MUTATED EVI5 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            1             95
  CLUS_3            4             40
  CLUS_4            2             86
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EVI5 MUTATED        1      4      0      0      4
  EVI5 WILD-TYPE     25     75     73     82     54
D939V3, multiclass
        clus
vv       EVI5 MUTATED EVI5 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             75
  CLUS_3            0             73
  CLUS_4            0             82
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EVI5 MUTATED        1      4      2      2
  EVI5 WILD-TYPE    126     47     69     67
D939V4, multiclass
        clus
vv       EVI5 MUTATED EVI5 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            4             47
  CLUS_3            2             69
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EVI5 MUTATED        2      1      5      0      0
  EVI5 WILD-TYPE     82     84     80     69     47
D939V5, multiclass
        clus
vv       EVI5 MUTATED EVI5 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            1             84
  CLUS_3            5             80
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EVI5 MUTATED        0      1      4      3
  EVI5 WILD-TYPE     95     73    117     77
D939V6, multiclass
        clus
vv       EVI5 MUTATED EVI5 WILD-TYPE
  CLUS_1            0             95
  CLUS_2            1             73
  CLUS_3            4            117
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EVI5 MUTATED        1      4      2      1      0      2
  EVI5 WILD-TYPE     51     60     70    103     40     57
D939V7, multiclass
        clus
vv       EVI5 MUTATED EVI5 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            4             60
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EVI5 MUTATED        7      1      2
  EVI5 WILD-TYPE    210     74     97
D939V8, multiclass
        clus
vv       EVI5 MUTATED EVI5 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EVI5 MUTATED        3      1      5
  EVI5 WILD-TYPE    118    107     67
D939V9, multiclass
        clus
vv       EVI5 MUTATED EVI5 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            1            107
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EVI5 MUTATED        2      1      3      1      2
  EVI5 WILD-TYPE     86     65     42     54     45
D939V10, multiclass
        clus
vv       EVI5 MUTATED EVI5 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            1             65
  CLUS_3            3             42
  CLUS_4            1             54
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(940) Variable = POU5F1B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POU5F1B MUTATED        3      4      1      0
  POU5F1B WILD-TYPE    201    133     46      3
D940V1, multiclass
        clus
vv       POU5F1B MUTATED POU5F1B WILD-TYPE
  CLUS_1               3               201
  CLUS_2               4               133
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POU5F1B MUTATED        2      5      0      1      0
  POU5F1B WILD-TYPE     37     91     44     87     80
D940V2, multiclass
        clus
vv       POU5F1B MUTATED POU5F1B WILD-TYPE
  CLUS_1               2                37
  CLUS_2               5                91
  CLUS_3               0                44
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POU5F1B MUTATED        0      2      3      0      2
  POU5F1B WILD-TYPE     26     77     70     82     56
D940V3, multiclass
        clus
vv       POU5F1B MUTATED POU5F1B WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               3                70
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POU5F1B MUTATED        2      3      1      1
  POU5F1B WILD-TYPE    125     48     70     68
D940V4, multiclass
        clus
vv       POU5F1B MUTATED POU5F1B WILD-TYPE
  CLUS_1               2               125
  CLUS_2               3                48
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POU5F1B MUTATED        1      1      5      0      1
  POU5F1B WILD-TYPE     83     84     80     69     46
D940V5, multiclass
        clus
vv       POU5F1B MUTATED POU5F1B WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               5                80
  CLUS_4               0                69
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POU5F1B MUTATED        1      1      2      4
  POU5F1B WILD-TYPE     94     73    119     76
D940V6, multiclass
        clus
vv       POU5F1B MUTATED POU5F1B WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               2               119
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POU5F1B MUTATED        2      1      2      2      0      1
  POU5F1B WILD-TYPE     50     63     70    102     40     58
D940V7, multiclass
        clus
vv       POU5F1B MUTATED POU5F1B WILD-TYPE
  CLUS_1               2                50
  CLUS_2               1                63
  CLUS_3               2                70
  CLUS_4               2               102
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  POU5F1B MUTATED        6      1      1
  POU5F1B WILD-TYPE    211     74     98
D940V8, multiclass
        clus
vv       POU5F1B MUTATED POU5F1B WILD-TYPE
  CLUS_1               6               211
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  POU5F1B MUTATED        2      2      2
  POU5F1B WILD-TYPE    119    106     70
D940V9, multiclass
        clus
vv       POU5F1B MUTATED POU5F1B WILD-TYPE
  CLUS_1               2               119
  CLUS_2               2               106
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POU5F1B MUTATED        2      1      1      1      1
  POU5F1B WILD-TYPE     86     65     44     54     46
D940V10, multiclass
        clus
vv       POU5F1B MUTATED POU5F1B WILD-TYPE
  CLUS_1               2                86
  CLUS_2               1                65
  CLUS_3               1                44
  CLUS_4               1                54
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(941) Variable = NEIL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEIL1 MUTATED        1      6      0      0
  NEIL1 WILD-TYPE    203    131     47      3
D941V1, multiclass
        clus
vv       NEIL1 MUTATED NEIL1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             6             131
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEIL1 MUTATED        0      2      2      1      0
  NEIL1 WILD-TYPE     39     94     42     87     80
D941V2, multiclass
        clus
vv       NEIL1 MUTATED NEIL1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             2              94
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEIL1 MUTATED        2      2      3      0      0
  NEIL1 WILD-TYPE     24     77     70     82     58
D941V3, multiclass
        clus
vv       NEIL1 MUTATED NEIL1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEIL1 MUTATED        3      2      2      0
  NEIL1 WILD-TYPE    124     49     69     69
D941V4, multiclass
        clus
vv       NEIL1 MUTATED NEIL1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             2              49
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEIL1 MUTATED        2      2      1      1      1
  NEIL1 WILD-TYPE     82     83     84     68     46
D941V5, multiclass
        clus
vv       NEIL1 MUTATED NEIL1 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             2              83
  CLUS_3             1              84
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEIL1 MUTATED        4      0      1      2
  NEIL1 WILD-TYPE     91     74    120     78
D941V6, multiclass
        clus
vv       NEIL1 MUTATED NEIL1 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEIL1 MUTATED        0      3      1      1      0      2
  NEIL1 WILD-TYPE     52     61     71    103     40     57
D941V7, multiclass
        clus
vv       NEIL1 MUTATED NEIL1 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NEIL1 MUTATED        5      0      2
  NEIL1 WILD-TYPE    212     75     97
D941V8, multiclass
        clus
vv       NEIL1 MUTATED NEIL1 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NEIL1 MUTATED        1      1      2
  NEIL1 WILD-TYPE    120    107     70
D941V9, multiclass
        clus
vv       NEIL1 MUTATED NEIL1 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEIL1 MUTATED        1      0      2      1      0
  NEIL1 WILD-TYPE     87     66     43     54     47
D941V10, multiclass
        clus
vv       NEIL1 MUTATED NEIL1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(942) Variable = LRRFIP2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRFIP2 MUTATED        1      5      2      0
  LRRFIP2 WILD-TYPE    203    132     45      3
D942V1, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               5               132
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRFIP2 MUTATED        0      4      1      1      0
  LRRFIP2 WILD-TYPE     39     92     43     87     80
D942V2, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               4                92
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRFIP2 MUTATED        0      2      3      0      2
  LRRFIP2 WILD-TYPE     26     77     70     82     56
D942V3, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               3                70
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRFIP2 MUTATED        1      3      2      1
  LRRFIP2 WILD-TYPE    126     48     69     68
D942V4, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               3                48
  CLUS_3               2                69
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRFIP2 MUTATED        1      0      3      1      2
  LRRFIP2 WILD-TYPE     83     85     82     68     45
D942V5, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                85
  CLUS_3               3                82
  CLUS_4               1                68
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRFIP2 MUTATED        4      0      1      2
  LRRFIP2 WILD-TYPE     91     74    120     78
D942V6, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               0                74
  CLUS_3               1               120
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRRFIP2 MUTATED        2      3      1      1      0      1
  LRRFIP2 WILD-TYPE     50     61     71    103     40     58
D942V7, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               3                61
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LRRFIP2 MUTATED        6      1      1
  LRRFIP2 WILD-TYPE    211     74     98
D942V8, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  LRRFIP2 MUTATED        0      1      2
  LRRFIP2 WILD-TYPE    121    107     70
D942V9, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               0               121
  CLUS_2               1               107
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRFIP2 MUTATED        0      1      1      1      0
  LRRFIP2 WILD-TYPE     88     65     44     54     47
D942V10, multiclass
        clus
vv       LRRFIP2 MUTATED LRRFIP2 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               1                65
  CLUS_3               1                44
  CLUS_4               1                54
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(943) Variable = IGDCC4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGDCC4 MUTATED        5      7      1      0
  IGDCC4 WILD-TYPE    199    130     46      3
D943V1, multiclass
        clus
vv       IGDCC4 MUTATED IGDCC4 WILD-TYPE
  CLUS_1              5              199
  CLUS_2              7              130
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGDCC4 MUTATED        2      4      0      1      1
  IGDCC4 WILD-TYPE     37     92     44     87     79
D943V2, multiclass
        clus
vv       IGDCC4 MUTATED IGDCC4 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              4               92
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGDCC4 MUTATED        2      2      4      1      3
  IGDCC4 WILD-TYPE     24     77     69     81     55
D943V3, multiclass
        clus
vv       IGDCC4 MUTATED IGDCC4 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              2               77
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGDCC4 MUTATED        7      3      1      1
  IGDCC4 WILD-TYPE    120     48     70     68
D943V4, multiclass
        clus
vv       IGDCC4 MUTATED IGDCC4 WILD-TYPE
  CLUS_1              7              120
  CLUS_2              3               48
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGDCC4 MUTATED        2      0      7      1      3
  IGDCC4 WILD-TYPE     82     85     78     68     44
D943V5, multiclass
        clus
vv       IGDCC4 MUTATED IGDCC4 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              0               85
  CLUS_3              7               78
  CLUS_4              1               68
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGDCC4 MUTATED        3      1      3      6
  IGDCC4 WILD-TYPE     92     73    118     74
D943V6, multiclass
        clus
vv       IGDCC4 MUTATED IGDCC4 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              3              118
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IGDCC4 MUTATED        3      6      1      1      0      2
  IGDCC4 WILD-TYPE     49     58     71    103     40     57
D943V7, multiclass
        clus
vv       IGDCC4 MUTATED IGDCC4 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              6               58
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGDCC4 MUTATED       10      2      1
  IGDCC4 WILD-TYPE    207     73     98
D943V8, multiclass
        clus
vv       IGDCC4 MUTATED IGDCC4 WILD-TYPE
  CLUS_1             10              207
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGDCC4 MUTATED        3      1      3
  IGDCC4 WILD-TYPE    118    107     69
D943V9, multiclass
        clus
vv       IGDCC4 MUTATED IGDCC4 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGDCC4 MUTATED        3      1      2      0      1
  IGDCC4 WILD-TYPE     85     65     43     55     46
D943V10, multiclass
        clus
vv       IGDCC4 MUTATED IGDCC4 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(944) Variable = TRPM6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM6 MUTATED        9     10      2      0
  TRPM6 WILD-TYPE    195    127     45      3
D944V1, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             9             195
  CLUS_2            10             127
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRPM6 MUTATED        4     10      1      4      2
  TRPM6 WILD-TYPE     35     86     43     84     78
D944V2, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             4              35
  CLUS_2            10              86
  CLUS_3             1              43
  CLUS_4             4              84
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRPM6 MUTATED        1      4      6      4      5
  TRPM6 WILD-TYPE     25     75     67     78     53
D944V3, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             6              67
  CLUS_4             4              78
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM6 MUTATED        5      9      4      2
  TRPM6 WILD-TYPE    122     42     67     67
D944V4, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             9              42
  CLUS_3             4              67
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRPM6 MUTATED        4      4      9      3      2
  TRPM6 WILD-TYPE     80     81     76     66     45
D944V5, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             4              80
  CLUS_2             4              81
  CLUS_3             9              76
  CLUS_4             3              66
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRPM6 MUTATED        4      5      5      8
  TRPM6 WILD-TYPE     91     69    116     72
D944V6, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             5              69
  CLUS_3             5             116
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRPM6 MUTATED        4      6      4      4      1      3
  TRPM6 WILD-TYPE     48     58     68    100     39     56
D944V7, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             6              58
  CLUS_3             4              68
  CLUS_4             4             100
  CLUS_5             1              39
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPM6 MUTATED       15      1      6
  TRPM6 WILD-TYPE    202     74     93
D944V8, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1            15             202
  CLUS_2             1              74
  CLUS_3             6              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRPM6 MUTATED       12      3      5
  TRPM6 WILD-TYPE    109    105     67
D944V9, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1            12             109
  CLUS_2             3             105
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRPM6 MUTATED        4      1      5      4      6
  TRPM6 WILD-TYPE     84     65     40     51     41
D944V10, multiclass
        clus
vv       TRPM6 MUTATED TRPM6 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             5              40
  CLUS_4             4              51
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(945) Variable = IL1F7 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1F7 MUTATED        0      3      0      0
  IL1F7 WILD-TYPE    204    134     47      3
D945V1, multiclass
        clus
vv       IL1F7 MUTATED IL1F7 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             3             134
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL1F7 MUTATED        0      2      0      0      0
  IL1F7 WILD-TYPE     39     94     44     88     80
D945V2, multiclass
[1] "Remove cluster labels:" "IL1F7 MUTATED"         
clus
  IL1F7 MUTATED IL1F7 WILD-TYPE 
              2             345 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8060 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8081 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8369      TCGA-BR-8370 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4J4      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-A4MJ      TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-5716 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2      TCGA-D7-A747 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B      TCGA-EQ-5647 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7735 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-FP-A4BE      TCGA-FP-A4BF      TCGA-FP-A8CX      TCGA-FP-A9TM 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8238 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8244      TCGA-HU-8249      TCGA-HU-8602 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4G2 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G6      TCGA-HU-A4G8      TCGA-HU-A4G9 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4GJ      TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4H0      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-8663      TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-A6RN      TCGA-IN-A6RO      TCGA-IN-A6RP      TCGA-IN-A6RR 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-KB-A6F7      TCGA-KB-A93G      TCGA-KB-A93J      TCGA-MX-A5UG 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-MX-A663      TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-R5-A7ZF      TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-R5-A805      TCGA-RD-A7BS      TCGA-RD-A7BT      TCGA-RD-A7BW 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-RD-A7C1      TCGA-RD-A8MV      TCGA-RD-A8MW      TCGA-RD-A8N0 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-RD-A8N1      TCGA-RD-A8N2      TCGA-RD-A8N4      TCGA-RD-A8N5 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU      TCGA-VQ-A8DV 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A8DZ      TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A8P3      TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A8PQ      TCGA-VQ-A91Q      TCGA-VQ-A91U      TCGA-VQ-A91V 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A92D      TCGA-VQ-A94T      TCGA-VQ-AA64      TCGA-VQ-AA68 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6J      TCGA-VQ-AA6K 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-ZA-A8F6 
"IL1F7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL1F7 MUTATED        0      1      1      0      0
  IL1F7 WILD-TYPE     26     78     72     82     58
D945V3, multiclass
[1] "Remove cluster labels:" "IL1F7 MUTATED"         
clus
  IL1F7 MUTATED IL1F7 WILD-TYPE 
              2             316 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-4183      TCGA-BR-4184 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4292      TCGA-BR-4294 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362      TCGA-BR-4363 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369      TCGA-BR-4370 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453      TCGA-BR-6454 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457      TCGA-BR-6458 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566      TCGA-BR-6705 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709      TCGA-BR-6710 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7704 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8060      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8367      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J5      TCGA-BR-A4J6 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300      TCGA-CG-4301 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442      TCGA-CG-4443 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT      TCGA-D7-A4YU 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A6F0      TCGA-D7-A748      TCGA-EQ-8122      TCGA-EQ-A4SO 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-F1-A72C      TCGA-FP-7916      TCGA-FP-7998      TCGA-HF-7131 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134      TCGA-HF-7136 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8602      TCGA-HU-8608 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4GF      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4HD 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RO 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-A6RR      TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-A7NU      TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-KB-A6F5      TCGA-KB-A93G      TCGA-MX-A5UG      TCGA-RD-A7BS 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-RD-A7BT      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-SW-A7EA 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-AA64 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1F7 MUTATED        1      1      0      0
  IL1F7 WILD-TYPE    126     50     71     69
D945V4, multiclass
[1] "Remove cluster labels:" "IL1F7 MUTATED"         
clus
  IL1F7 MUTATED IL1F7 WILD-TYPE 
              2             316 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-4183      TCGA-BR-4184 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4292      TCGA-BR-4294 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362      TCGA-BR-4363 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369      TCGA-BR-4370 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453      TCGA-BR-6454 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457      TCGA-BR-6458 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566      TCGA-BR-6705 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709      TCGA-BR-6710 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803      TCGA-BR-6852 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703      TCGA-BR-7704 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8060      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8367      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J5      TCGA-BR-A4J6 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300      TCGA-CG-4301 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306      TCGA-CG-4436 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442      TCGA-CG-4443 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455      TCGA-CG-4460 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469      TCGA-CG-4474 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477      TCGA-CG-5716 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724      TCGA-CG-5725 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728      TCGA-CG-5730 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT      TCGA-D7-A4YU 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A6F0      TCGA-D7-A748      TCGA-EQ-8122      TCGA-EQ-A4SO 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-F1-A72C      TCGA-FP-7916      TCGA-FP-7998      TCGA-HF-7131 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134      TCGA-HF-7136 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8602      TCGA-HU-8608 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4GF      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4HD 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RO 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-A6RR      TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-A7NU      TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-KB-A6F5      TCGA-KB-A93G      TCGA-MX-A5UG      TCGA-RD-A7BS 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-RD-A7BT      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-SW-A7EA 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-AA64 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL1F7 MUTATED        0      1      0      0      2
  IL1F7 WILD-TYPE     84     84     85     69     45
D945V5, multiclass
        clus
vv       IL1F7 MUTATED IL1F7 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             0              85
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IL1F7 MUTATED        1      0      0      2
  IL1F7 WILD-TYPE     94     74    121     78
D945V6, multiclass
        clus
vv       IL1F7 MUTATED IL1F7 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IL1F7 MUTATED        2      0      0      0      1      0
  IL1F7 WILD-TYPE     50     64     72    104     39     59
D945V7, multiclass
        clus
vv       IL1F7 MUTATED IL1F7 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             0              64
  CLUS_3             0              72
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL1F7 MUTATED        2      0      1
  IL1F7 WILD-TYPE    215     75     98
D945V8, multiclass
        clus
vv       IL1F7 MUTATED IL1F7 WILD-TYPE
  CLUS_1             2             215
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IL1F7 MUTATED        1      1      0
  IL1F7 WILD-TYPE    120    107     72
D945V9, multiclass
[1] "Remove cluster labels:" "IL1F7 MUTATED"         
clus
  IL1F7 MUTATED IL1F7 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-FP-A9TM      TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4GJ      TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-A6RP      TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-KB-A6F7      TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A663 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IL1F7 MUTATED        1      0      0      0      1
  IL1F7 WILD-TYPE     87     66     45     55     46
D945V10, multiclass
[1] "Remove cluster labels:" "IL1F7 MUTATED"         
clus
  IL1F7 MUTATED IL1F7 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-FP-A9TM      TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4GJ      TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-A6RP      TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-KB-A6F7      TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A663 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" "IL1F7 WILD-TYPE" 

Clustering(946) Variable = BRPF3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRPF3 MUTATED        2      8      1      0
  BRPF3 WILD-TYPE    202    129     46      3
D946V1, multiclass
        clus
vv       BRPF3 MUTATED BRPF3 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRPF3 MUTATED        2      3      3      0      0
  BRPF3 WILD-TYPE     37     93     41     88     80
D946V2, multiclass
        clus
vv       BRPF3 MUTATED BRPF3 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             3              93
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRPF3 MUTATED        1      5      1      1      2
  BRPF3 WILD-TYPE     25     74     72     81     56
D946V3, multiclass
        clus
vv       BRPF3 MUTATED BRPF3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRPF3 MUTATED        2      3      4      1
  BRPF3 WILD-TYPE    125     48     67     68
D946V4, multiclass
        clus
vv       BRPF3 MUTATED BRPF3 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             3              48
  CLUS_3             4              67
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRPF3 MUTATED        1      3      3      1      1
  BRPF3 WILD-TYPE     83     82     82     68     46
D946V5, multiclass
        clus
vv       BRPF3 MUTATED BRPF3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRPF3 MUTATED        1      3      1      4
  BRPF3 WILD-TYPE     94     71    120     76
D946V6, multiclass
        clus
vv       BRPF3 MUTATED BRPF3 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             3              71
  CLUS_3             1             120
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BRPF3 MUTATED        1      5      2      3      0      0
  BRPF3 WILD-TYPE     51     59     70    101     40     59
D946V7, multiclass
        clus
vv       BRPF3 MUTATED BRPF3 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             5              59
  CLUS_3             2              70
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRPF3 MUTATED        8      3      0
  BRPF3 WILD-TYPE    209     72     99
D946V8, multiclass
        clus
vv       BRPF3 MUTATED BRPF3 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             3              72
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BRPF3 MUTATED        3      1      4
  BRPF3 WILD-TYPE    118    107     68
D946V9, multiclass
        clus
vv       BRPF3 MUTATED BRPF3 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRPF3 MUTATED        2      2      1      0      3
  BRPF3 WILD-TYPE     86     64     44     55     44
D946V10, multiclass
        clus
vv       BRPF3 MUTATED BRPF3 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             2              64
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(947) Variable = ACACB MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACACB MUTATED        7     22      3      0
  ACACB WILD-TYPE    197    115     44      3
D947V1, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             7             197
  CLUS_2            22             115
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACACB MUTATED        1     14      6      2      4
  ACACB WILD-TYPE     38     82     38     86     76
D947V2, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             1              38
  CLUS_2            14              82
  CLUS_3             6              38
  CLUS_4             2              86
  CLUS_5             4              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACACB MUTATED        1      4      9      5     11
  ACACB WILD-TYPE     25     75     64     77     47
D947V3, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             9              64
  CLUS_4             5              77
  CLUS_5            11              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACACB MUTATED        3     16      4      7
  ACACB WILD-TYPE    124     35     67     62
D947V4, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             3             124
  CLUS_2            16              35
  CLUS_3             4              67
  CLUS_4             7              62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACACB MUTATED        2      8     15      2      4
  ACACB WILD-TYPE     82     77     70     67     43
D947V5, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             2              82
  CLUS_2             8              77
  CLUS_3            15              70
  CLUS_4             2              67
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACACB MUTATED        4      6      6     15
  ACACB WILD-TYPE     91     68    115     65
D947V6, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             4              91
  CLUS_2             6              68
  CLUS_3             6             115
  CLUS_4            15              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACACB MUTATED        7     12      7      4      1      1
  ACACB WILD-TYPE     45     52     65    100     39     58
D947V7, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             7              45
  CLUS_2            12              52
  CLUS_3             7              65
  CLUS_4             4             100
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACACB MUTATED       23      6      3
  ACACB WILD-TYPE    194     69     96
D947V8, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1            23             194
  CLUS_2             6              69
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACACB MUTATED        7      5     10
  ACACB WILD-TYPE    114    103     62
D947V9, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             7             114
  CLUS_2             5             103
  CLUS_3            10              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACACB MUTATED        5      4      5      2      6
  ACACB WILD-TYPE     83     62     40     53     41
D947V10, multiclass
        clus
vv       ACACB MUTATED ACACB WILD-TYPE
  CLUS_1             5              83
  CLUS_2             4              62
  CLUS_3             5              40
  CLUS_4             2              53
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(948) Variable = PIGZ MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGZ MUTATED        2      6      1      0
  PIGZ WILD-TYPE    202    131     46      3
D948V1, multiclass
        clus
vv       PIGZ MUTATED PIGZ WILD-TYPE
  CLUS_1            2            202
  CLUS_2            6            131
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGZ MUTATED        0      5      0      1      0
  PIGZ WILD-TYPE     39     91     44     87     80
D948V2, multiclass
        clus
vv       PIGZ MUTATED PIGZ WILD-TYPE
  CLUS_1            0             39
  CLUS_2            5             91
  CLUS_3            0             44
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGZ MUTATED        0      2      2      2      1
  PIGZ WILD-TYPE     26     77     71     80     57
D948V3, multiclass
        clus
vv       PIGZ MUTATED PIGZ WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            2             71
  CLUS_4            2             80
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGZ MUTATED        0      4      1      2
  PIGZ WILD-TYPE    127     47     70     67
D948V4, multiclass
        clus
vv       PIGZ MUTATED PIGZ WILD-TYPE
  CLUS_1            0            127
  CLUS_2            4             47
  CLUS_3            1             70
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGZ MUTATED        0      2      4      1      1
  PIGZ WILD-TYPE     84     83     81     68     46
D948V5, multiclass
        clus
vv       PIGZ MUTATED PIGZ WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            4             81
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGZ MUTATED        2      3      0      3
  PIGZ WILD-TYPE     93     71    121     77
D948V6, multiclass
        clus
vv       PIGZ MUTATED PIGZ WILD-TYPE
  CLUS_1            2             93
  CLUS_2            3             71
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIGZ MUTATED        2      3      2      1      1      0
  PIGZ WILD-TYPE     50     61     70    103     39     59
D948V7, multiclass
        clus
vv       PIGZ MUTATED PIGZ WILD-TYPE
  CLUS_1            2             50
  CLUS_2            3             61
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGZ MUTATED        6      2      1
  PIGZ WILD-TYPE    211     73     98
D948V8, multiclass
        clus
vv       PIGZ MUTATED PIGZ WILD-TYPE
  CLUS_1            6            211
  CLUS_2            2             73
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGZ MUTATED        2      0      2
  PIGZ WILD-TYPE    119    108     70
D948V9, multiclass
        clus
vv       PIGZ MUTATED PIGZ WILD-TYPE
  CLUS_1            2            119
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGZ MUTATED        1      0      1      0      2
  PIGZ WILD-TYPE     87     66     44     55     45
D948V10, multiclass
        clus
vv       PIGZ MUTATED PIGZ WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(949) Variable = SPATA2L MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA2L MUTATED        0      5      1      0
  SPATA2L WILD-TYPE    204    132     46      3
D949V1, multiclass
        clus
vv       SPATA2L MUTATED SPATA2L WILD-TYPE
  CLUS_1               0               204
  CLUS_2               5               132
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPATA2L MUTATED        0      4      0      0      1
  SPATA2L WILD-TYPE     39     92     44     88     79
D949V2, multiclass
        clus
vv       SPATA2L MUTATED SPATA2L WILD-TYPE
  CLUS_1               0                39
  CLUS_2               4                92
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPATA2L MUTATED        1      1      1      1      1
  SPATA2L WILD-TYPE     25     78     72     81     57
D949V3, multiclass
        clus
vv       SPATA2L MUTATED SPATA2L WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                78
  CLUS_3               1                72
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA2L MUTATED        1      3      0      1
  SPATA2L WILD-TYPE    126     48     71     68
D949V4, multiclass
        clus
vv       SPATA2L MUTATED SPATA2L WILD-TYPE
  CLUS_1               1               126
  CLUS_2               3                48
  CLUS_3               0                71
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPATA2L MUTATED        0      2      3      0      0
  SPATA2L WILD-TYPE     84     83     82     69     47
D949V5, multiclass
        clus
vv       SPATA2L MUTATED SPATA2L WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3               3                82
  CLUS_4               0                69
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPATA2L MUTATED        2      1      1      1
  SPATA2L WILD-TYPE     93     73    120     79
D949V6, multiclass
        clus
vv       SPATA2L MUTATED SPATA2L WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               1                79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPATA2L MUTATED        0      3      2      0      1      0
  SPATA2L WILD-TYPE     52     61     70    104     39     59
D949V7, multiclass
        clus
vv       SPATA2L MUTATED SPATA2L WILD-TYPE
  CLUS_1               0                52
  CLUS_2               3                61
  CLUS_3               2                70
  CLUS_4               0               104
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPATA2L MUTATED        5      0      1
  SPATA2L WILD-TYPE    212     75     98
D949V8, multiclass
        clus
vv       SPATA2L MUTATED SPATA2L WILD-TYPE
  CLUS_1               5               212
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SPATA2L MUTATED        0      1      4
  SPATA2L WILD-TYPE    121    107     68
D949V9, multiclass
        clus
vv       SPATA2L MUTATED SPATA2L WILD-TYPE
  CLUS_1               0               121
  CLUS_2               1               107
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPATA2L MUTATED        1      0      2      0      2
  SPATA2L WILD-TYPE     87     66     43     55     45
D949V10, multiclass
        clus
vv       SPATA2L MUTATED SPATA2L WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(950) Variable = SLC9A1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A1 MUTATED        1     10      0      0
  SLC9A1 WILD-TYPE    203    127     47      3
D950V1, multiclass
        clus
vv       SLC9A1 MUTATED SLC9A1 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             10              127
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A1 MUTATED        0      6      2      0      0
  SLC9A1 WILD-TYPE     39     90     42     88     80
D950V2, multiclass
        clus
vv       SLC9A1 MUTATED SLC9A1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              6               90
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A1 MUTATED        2      3      3      1      2
  SLC9A1 WILD-TYPE     24     76     70     81     56
D950V3, multiclass
        clus
vv       SLC9A1 MUTATED SLC9A1 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              3               76
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A1 MUTATED        3      4      3      1
  SLC9A1 WILD-TYPE    124     47     68     68
D950V4, multiclass
        clus
vv       SLC9A1 MUTATED SLC9A1 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              4               47
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A1 MUTATED        2      1      6      1      1
  SLC9A1 WILD-TYPE     82     84     79     68     46
D950V5, multiclass
        clus
vv       SLC9A1 MUTATED SLC9A1 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              1               84
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC9A1 MUTATED        3      2      1      5
  SLC9A1 WILD-TYPE     92     72    120     75
D950V6, multiclass
        clus
vv       SLC9A1 MUTATED SLC9A1 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC9A1 MUTATED        4      3      1      2      0      2
  SLC9A1 WILD-TYPE     48     61     71    102     40     57
D950V7, multiclass
        clus
vv       SLC9A1 MUTATED SLC9A1 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A1 MUTATED        8      2      2
  SLC9A1 WILD-TYPE    209     73     97
D950V8, multiclass
        clus
vv       SLC9A1 MUTATED SLC9A1 WILD-TYPE
  CLUS_1              8              209
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SLC9A1 MUTATED        3      0      4
  SLC9A1 WILD-TYPE    118    108     68
D950V9, multiclass
        clus
vv       SLC9A1 MUTATED SLC9A1 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC9A1 MUTATED        2      1      2      0      2
  SLC9A1 WILD-TYPE     86     65     43     55     45
D950V10, multiclass
        clus
vv       SLC9A1 MUTATED SLC9A1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(951) Variable = PAQR9 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAQR9 MUTATED        9      6      1      0
  PAQR9 WILD-TYPE    195    131     46      3
D951V1, multiclass
        clus
vv       PAQR9 MUTATED PAQR9 WILD-TYPE
  CLUS_1             9             195
  CLUS_2             6             131
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAQR9 MUTATED        1      6      0      5      1
  PAQR9 WILD-TYPE     38     90     44     83     79
D951V2, multiclass
        clus
vv       PAQR9 MUTATED PAQR9 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             0              44
  CLUS_4             5              83
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAQR9 MUTATED        0      4      4      2      2
  PAQR9 WILD-TYPE     26     75     69     80     56
D951V3, multiclass
        clus
vv       PAQR9 MUTATED PAQR9 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             4              69
  CLUS_4             2              80
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAQR9 MUTATED        5      3      3      1
  PAQR9 WILD-TYPE    122     48     68     68
D951V4, multiclass
        clus
vv       PAQR9 MUTATED PAQR9 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             3              48
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAQR9 MUTATED        6      3      4      1      2
  PAQR9 WILD-TYPE     78     82     81     68     45
D951V5, multiclass
        clus
vv       PAQR9 MUTATED PAQR9 WILD-TYPE
  CLUS_1             6              78
  CLUS_2             3              82
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PAQR9 MUTATED        4      2      6      4
  PAQR9 WILD-TYPE     91     72    115     76
D951V6, multiclass
        clus
vv       PAQR9 MUTATED PAQR9 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             6             115
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PAQR9 MUTATED        3      3      3      1      2      4
  PAQR9 WILD-TYPE     49     61     69    103     38     55
D951V7, multiclass
        clus
vv       PAQR9 MUTATED PAQR9 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             3              61
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             2              38
  CLUS_6             4              55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAQR9 MUTATED        8      1      7
  PAQR9 WILD-TYPE    209     74     92
D951V8, multiclass
        clus
vv       PAQR9 MUTATED PAQR9 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             1              74
  CLUS_3             7              92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PAQR9 MUTATED        6      3      3
  PAQR9 WILD-TYPE    115    105     69
D951V9, multiclass
        clus
vv       PAQR9 MUTATED PAQR9 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             3             105
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PAQR9 MUTATED        4      1      0      5      2
  PAQR9 WILD-TYPE     84     65     45     50     45
D951V10, multiclass
        clus
vv       PAQR9 MUTATED PAQR9 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             5              50
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(952) Variable = BTBD10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD10 MUTATED        1      3      1      0
  BTBD10 WILD-TYPE    203    134     46      3
D952V1, multiclass
        clus
vv       BTBD10 MUTATED BTBD10 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              3              134
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD10 MUTATED        1      1      0      0      1
  BTBD10 WILD-TYPE     38     95     44     88     79
D952V2, multiclass
        clus
vv       BTBD10 MUTATED BTBD10 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              1               95
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD10 MUTATED        1      1      1      1      1
  BTBD10 WILD-TYPE     25     78     72     81     57
D952V3, multiclass
        clus
vv       BTBD10 MUTATED BTBD10 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD10 MUTATED        3      1      0      1
  BTBD10 WILD-TYPE    124     50     71     68
D952V4, multiclass
        clus
vv       BTBD10 MUTATED BTBD10 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              1               50
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD10 MUTATED        1      1      3      0      0
  BTBD10 WILD-TYPE     83     84     82     69     47
D952V5, multiclass
        clus
vv       BTBD10 MUTATED BTBD10 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BTBD10 MUTATED        2      1      0      2
  BTBD10 WILD-TYPE     93     73    121     78
D952V6, multiclass
        clus
vv       BTBD10 MUTATED BTBD10 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BTBD10 MUTATED        1      1      0      2      0      1
  BTBD10 WILD-TYPE     51     63     72    102     40     58
D952V7, multiclass
        clus
vv       BTBD10 MUTATED BTBD10 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              1               63
  CLUS_3              0               72
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTBD10 MUTATED        3      1      1
  BTBD10 WILD-TYPE    214     74     98
D952V8, multiclass
        clus
vv       BTBD10 MUTATED BTBD10 WILD-TYPE
  CLUS_1              3              214
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BTBD10 MUTATED        1      1      0
  BTBD10 WILD-TYPE    120    107     72
D952V9, multiclass
[1] "Remove cluster labels:" "BTBD10 MUTATED"        
clus
  BTBD10 MUTATED BTBD10 WILD-TYPE 
               2              299 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-6452       TCGA-BR-6453 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8060       TCGA-BR-8077       TCGA-BR-8078 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360       TCGA-BR-8361 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8368 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8485       TCGA-BR-8486 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8590       TCGA-BR-8591 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A452 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-A4J1       TCGA-BR-A4J5       TCGA-BR-A4J6       TCGA-BR-A4J7 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI       TCGA-BR-A4QL 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534       TCGA-CD-8535 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5716 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576       TCGA-D7-8578 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU       TCGA-D7-A4YV 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-D7-A6ET       TCGA-D7-A6EV 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-A6EX       TCGA-D7-A6EY       TCGA-D7-A6EZ       TCGA-D7-A6F0 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-A6F2       TCGA-D7-A747       TCGA-D7-A748       TCGA-D7-A74A 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-A74B       TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-FP-A9TM       TCGA-HF-7131       TCGA-HF-7132       TCGA-HF-7134 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-HF-7136       TCGA-HU-8238       TCGA-HU-8243       TCGA-HU-8602 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-HU-A4GC       TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-HU-A4GJ       TCGA-HU-A4GN       TCGA-HU-A4GQ       TCGA-HU-A4GT 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H4 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8       TCGA-HU-A4HB 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-IN-A6RI       TCGA-IN-A6RJ       TCGA-IN-A6RL       TCGA-IN-A6RN 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-IN-A6RP       TCGA-IN-A7NR       TCGA-IN-A7NT       TCGA-IN-A7NU 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-IN-AB1V       TCGA-IN-AB1X       TCGA-IP-7968       TCGA-KB-A6F5 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-KB-A6F7       TCGA-KB-A93J       TCGA-MX-A5UG       TCGA-MX-A5UJ 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-MX-A663       TCGA-MX-A666       TCGA-R5-A7O7       TCGA-R5-A7ZE 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-R5-A7ZF       TCGA-R5-A7ZI       TCGA-R5-A7ZR       TCGA-R5-A804 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-R5-A805       TCGA-RD-A7BS       TCGA-RD-A7BW       TCGA-RD-A7C1 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-RD-A8MV       TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-RD-A8N5       TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-SW-A7EB       TCGA-VQ-A8DL       TCGA-VQ-A8DU       TCGA-VQ-A8DV 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-VQ-A8E2       TCGA-VQ-A8E7       TCGA-VQ-A8P3       TCGA-VQ-A8PE 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ       TCGA-VQ-A91Q 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D       TCGA-VQ-A94T 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-VQ-AA64       TCGA-VQ-AA68       TCGA-VQ-AA69       TCGA-VQ-AA6A 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-VQ-AA6B       TCGA-VQ-AA6F       TCGA-VQ-AA6G       TCGA-VQ-AA6I 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-VQ-AA6J       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BTBD10 MUTATED        0      1      0      0      1
  BTBD10 WILD-TYPE     88     65     45     55     46
D952V10, multiclass
[1] "Remove cluster labels:" "BTBD10 MUTATED"        
clus
  BTBD10 MUTATED BTBD10 WILD-TYPE 
               2              299 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-6452       TCGA-BR-6453 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8060       TCGA-BR-8077       TCGA-BR-8078 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360       TCGA-BR-8361 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8368 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8485       TCGA-BR-8486 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8590       TCGA-BR-8591 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A452 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-A4J1       TCGA-BR-A4J5       TCGA-BR-A4J6       TCGA-BR-A4J7 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI       TCGA-BR-A4QL 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534       TCGA-CD-8535 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5716 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576       TCGA-D7-8578 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU       TCGA-D7-A4YV 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-D7-A6ET       TCGA-D7-A6EV 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-A6EX       TCGA-D7-A6EY       TCGA-D7-A6EZ       TCGA-D7-A6F0 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-A6F2       TCGA-D7-A747       TCGA-D7-A748       TCGA-D7-A74A 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-D7-A74B       TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-FP-A9TM       TCGA-HF-7131       TCGA-HF-7132       TCGA-HF-7134 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-HF-7136       TCGA-HU-8238       TCGA-HU-8243       TCGA-HU-8602 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-HU-A4GC       TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-HU-A4GJ       TCGA-HU-A4GN       TCGA-HU-A4GQ       TCGA-HU-A4GT 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H4 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8       TCGA-HU-A4HB 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-IN-A6RI       TCGA-IN-A6RJ       TCGA-IN-A6RL       TCGA-IN-A6RN 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-IN-A6RP       TCGA-IN-A7NR       TCGA-IN-A7NT       TCGA-IN-A7NU 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-IN-AB1V       TCGA-IN-AB1X       TCGA-IP-7968       TCGA-KB-A6F5 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-KB-A6F7       TCGA-KB-A93J       TCGA-MX-A5UG       TCGA-MX-A5UJ 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-MX-A663       TCGA-MX-A666       TCGA-R5-A7O7       TCGA-R5-A7ZE 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-R5-A7ZF       TCGA-R5-A7ZI       TCGA-R5-A7ZR       TCGA-R5-A804 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-R5-A805       TCGA-RD-A7BS       TCGA-RD-A7BW       TCGA-RD-A7C1 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-RD-A8MV       TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-RD-A8N5       TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-SW-A7EB       TCGA-VQ-A8DL       TCGA-VQ-A8DU       TCGA-VQ-A8DV 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-VQ-A8E2       TCGA-VQ-A8E7       TCGA-VQ-A8P3       TCGA-VQ-A8PE 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ       TCGA-VQ-A91Q 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D       TCGA-VQ-A94T 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-VQ-AA64       TCGA-VQ-AA68       TCGA-VQ-AA69       TCGA-VQ-AA6A 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-VQ-AA6B       TCGA-VQ-AA6F       TCGA-VQ-AA6G       TCGA-VQ-AA6I 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 
      TCGA-VQ-AA6J       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" "BTBD10 WILD-TYPE" 

Clustering(953) Variable = RAB40B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB40B MUTATED        1      7      0      0
  RAB40B WILD-TYPE    203    130     47      3
D953V1, multiclass
        clus
vv       RAB40B MUTATED RAB40B WILD-TYPE
  CLUS_1              1              203
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB40B MUTATED        0      3      1      0      1
  RAB40B WILD-TYPE     39     93     43     88     79
D953V2, multiclass
        clus
vv       RAB40B MUTATED RAB40B WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB40B MUTATED        0      1      2      0      3
  RAB40B WILD-TYPE     26     78     71     82     55
D953V3, multiclass
        clus
vv       RAB40B MUTATED RAB40B WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB40B MUTATED        1      5      0      0
  RAB40B WILD-TYPE    126     46     71     69
D953V4, multiclass
        clus
vv       RAB40B MUTATED RAB40B WILD-TYPE
  CLUS_1              1              126
  CLUS_2              5               46
  CLUS_3              0               71
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB40B MUTATED        1      1      5      1      0
  RAB40B WILD-TYPE     83     84     80     68     47
D953V5, multiclass
        clus
vv       RAB40B MUTATED RAB40B WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              5               80
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB40B MUTATED        3      0      0      5
  RAB40B WILD-TYPE     92     74    121     75
D953V6, multiclass
        clus
vv       RAB40B MUTATED RAB40B WILD-TYPE
  CLUS_1              3               92
  CLUS_2              0               74
  CLUS_3              0              121
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAB40B MUTATED        2      5      0      0      1      0
  RAB40B WILD-TYPE     50     59     72    104     39     59
D953V7, multiclass
        clus
vv       RAB40B MUTATED RAB40B WILD-TYPE
  CLUS_1              2               50
  CLUS_2              5               59
  CLUS_3              0               72
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RAB40B MUTATED        7      0      1
  RAB40B WILD-TYPE    210     75     98
D953V8, multiclass
        clus
vv       RAB40B MUTATED RAB40B WILD-TYPE
  CLUS_1              7              210
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RAB40B MUTATED        2      0      2
  RAB40B WILD-TYPE    119    108     70
D953V9, multiclass
        clus
vv       RAB40B MUTATED RAB40B WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB40B MUTATED        3      0      1      0      0
  RAB40B WILD-TYPE     85     66     44     55     47
D953V10, multiclass
        clus
vv       RAB40B MUTATED RAB40B WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(954) Variable = CSNK1G3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1G3 MUTATED        0      9      0      0
  CSNK1G3 WILD-TYPE    204    128     47      3
D954V1, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               9               128
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G3 MUTATED        0      6      1      0      1
  CSNK1G3 WILD-TYPE     39     90     43     88     79
D954V2, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               6                90
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G3 MUTATED        1      2      3      0      2
  CSNK1G3 WILD-TYPE     25     77     70     82     56
D954V3, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               2                77
  CLUS_3               3                70
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1G3 MUTATED        2      5      1      0
  CSNK1G3 WILD-TYPE    125     46     70     69
D954V4, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               5                46
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G3 MUTATED        0      2      4      1      1
  CSNK1G3 WILD-TYPE     84     83     81     68     46
D954V5, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3               4                81
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1G3 MUTATED        2      1      1      4
  CSNK1G3 WILD-TYPE     93     73    120     76
D954V6, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSNK1G3 MUTATED        3      3      2      1      0      0
  CSNK1G3 WILD-TYPE     49     61     70    103     40     59
D954V7, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               3                61
  CLUS_3               2                70
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK1G3 MUTATED        8      1      0
  CSNK1G3 WILD-TYPE    209     74     99
D954V8, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               8               209
  CLUS_2               1                74
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK1G3 MUTATED        3      1      3
  CSNK1G3 WILD-TYPE    118    107     69
D954V9, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               1               107
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G3 MUTATED        1      1      2      0      3
  CSNK1G3 WILD-TYPE     87     65     43     55     44
D954V10, multiclass
        clus
vv       CSNK1G3 MUTATED CSNK1G3 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(955) Variable = ITGB8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB8 MUTATED        3     10      2      0
  ITGB8 WILD-TYPE    201    127     45      3
D955V1, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            10             127
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGB8 MUTATED        4      5      2      2      0
  ITGB8 WILD-TYPE     35     91     42     86     80
D955V2, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             4              35
  CLUS_2             5              91
  CLUS_3             2              42
  CLUS_4             2              86
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGB8 MUTATED        1      4      1      1      4
  ITGB8 WILD-TYPE     25     75     72     81     54
D955V3, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB8 MUTATED        3      5      2      1
  ITGB8 WILD-TYPE    124     46     69     68
D955V4, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGB8 MUTATED        2      1      8      3      1
  ITGB8 WILD-TYPE     82     84     77     66     46
D955V5, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             1              84
  CLUS_3             8              77
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGB8 MUTATED        5      2      1      7
  ITGB8 WILD-TYPE     90     72    120     73
D955V6, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ITGB8 MUTATED        3      6      2      1      2      1
  ITGB8 WILD-TYPE     49     58     70    103     38     58
D955V7, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             6              58
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB8 MUTATED       10      1      4
  ITGB8 WILD-TYPE    207     74     95
D955V8, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             1              74
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGB8 MUTATED        4      2      6
  ITGB8 WILD-TYPE    117    106     66
D955V9, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             2             106
  CLUS_3             6              66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGB8 MUTATED        4      1      2      0      5
  ITGB8 WILD-TYPE     84     65     43     55     42
D955V10, multiclass
        clus
vv       ITGB8 MUTATED ITGB8 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(956) Variable = ADAMTS18 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS18 MUTATED        9     19      0      0
  ADAMTS18 WILD-TYPE    195    118     47      3
D956V1, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1                9                195
  CLUS_2               19                118
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAMTS18 MUTATED        1     17      1      6      0
  ADAMTS18 WILD-TYPE     38     79     43     82     80
D956V2, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2               17                 79
  CLUS_3                1                 43
  CLUS_4                6                 82
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAMTS18 MUTATED        2      7      9      5      3
  ADAMTS18 WILD-TYPE     24     72     64     77     55
D956V3, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                7                 72
  CLUS_3                9                 64
  CLUS_4                5                 77
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS18 MUTATED        8      8      6      4
  ADAMTS18 WILD-TYPE    119     43     65     65
D956V4, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1                8                119
  CLUS_2                8                 43
  CLUS_3                6                 65
  CLUS_4                4                 65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAMTS18 MUTATED        5      2     16      2      3
  ADAMTS18 WILD-TYPE     79     83     69     67     44
D956V5, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1                5                 79
  CLUS_2                2                 83
  CLUS_3               16                 69
  CLUS_4                2                 67
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ADAMTS18 MUTATED        7      4      6     11
  ADAMTS18 WILD-TYPE     88     70    115     69
D956V6, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1                7                 88
  CLUS_2                4                 70
  CLUS_3                6                115
  CLUS_4               11                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ADAMTS18 MUTATED        7      7      5      4      1      5
  ADAMTS18 WILD-TYPE     45     57     67    100     39     54
D956V7, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1                7                 45
  CLUS_2                7                 57
  CLUS_3                5                 67
  CLUS_4                4                100
  CLUS_5                1                 39
  CLUS_6                5                 54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTS18 MUTATED       20      3      6
  ADAMTS18 WILD-TYPE    197     72     93
D956V8, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1               20                197
  CLUS_2                3                 72
  CLUS_3                6                 93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  ADAMTS18 MUTATED       10      5      8
  ADAMTS18 WILD-TYPE    111    103     64
D956V9, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1               10                111
  CLUS_2                5                103
  CLUS_3                8                 64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ADAMTS18 MUTATED        8      1      4      5      5
  ADAMTS18 WILD-TYPE     80     65     41     50     42
D956V10, multiclass
        clus
vv       ADAMTS18 MUTATED ADAMTS18 WILD-TYPE
  CLUS_1                8                 80
  CLUS_2                1                 65
  CLUS_3                4                 41
  CLUS_4                5                 50
  CLUS_5                5                 42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(957) Variable = NPR3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPR3 MUTATED        1      7      2      0
  NPR3 WILD-TYPE    203    130     45      3
D957V1, multiclass
        clus
vv       NPR3 MUTATED NPR3 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            7            130
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPR3 MUTATED        2      1      1      1      2
  NPR3 WILD-TYPE     37     95     43     87     78
D957V2, multiclass
        clus
vv       NPR3 MUTATED NPR3 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            1             95
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPR3 MUTATED        1      4      1      0      3
  NPR3 WILD-TYPE     25     75     72     82     55
D957V3, multiclass
        clus
vv       NPR3 MUTATED NPR3 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             75
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPR3 MUTATED        2      5      2      0
  NPR3 WILD-TYPE    125     46     69     69
D957V4, multiclass
        clus
vv       NPR3 MUTATED NPR3 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            5             46
  CLUS_3            2             69
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPR3 MUTATED        1      3      3      1      1
  NPR3 WILD-TYPE     83     82     82     68     46
D957V5, multiclass
        clus
vv       NPR3 MUTATED NPR3 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            3             82
  CLUS_3            3             82
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NPR3 MUTATED        2      1      3      3
  NPR3 WILD-TYPE     93     73    118     77
D957V6, multiclass
        clus
vv       NPR3 MUTATED NPR3 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            1             73
  CLUS_3            3            118
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NPR3 MUTATED        2      5      2      1      0      0
  NPR3 WILD-TYPE     50     59     70    103     40     59
D957V7, multiclass
        clus
vv       NPR3 MUTATED NPR3 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            5             59
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPR3 MUTATED        8      2      0
  NPR3 WILD-TYPE    209     73     99
D957V8, multiclass
        clus
vv       NPR3 MUTATED NPR3 WILD-TYPE
  CLUS_1            8            209
  CLUS_2            2             73
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NPR3 MUTATED        3      1      2
  NPR3 WILD-TYPE    118    107     70
D957V9, multiclass
        clus
vv       NPR3 MUTATED NPR3 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NPR3 MUTATED        2      1      2      0      1
  NPR3 WILD-TYPE     86     65     43     55     46
D957V10, multiclass
        clus
vv       NPR3 MUTATED NPR3 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            1             65
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(958) Variable = MTSS1L MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTSS1L MUTATED        0      8      2      0
  MTSS1L WILD-TYPE    204    129     45      3
D958V1, multiclass
        clus
vv       MTSS1L MUTATED MTSS1L WILD-TYPE
  CLUS_1              0              204
  CLUS_2              8              129
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTSS1L MUTATED        0      6      2      0      0
  MTSS1L WILD-TYPE     39     90     42     88     80
D958V2, multiclass
        clus
vv       MTSS1L MUTATED MTSS1L WILD-TYPE
  CLUS_1              0               39
  CLUS_2              6               90
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTSS1L MUTATED        0      2      2      0      5
  MTSS1L WILD-TYPE     26     77     71     82     53
D958V3, multiclass
        clus
vv       MTSS1L MUTATED MTSS1L WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              5               53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTSS1L MUTATED        2      5      2      0
  MTSS1L WILD-TYPE    125     46     69     69
D958V4, multiclass
        clus
vv       MTSS1L MUTATED MTSS1L WILD-TYPE
  CLUS_1              2              125
  CLUS_2              5               46
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTSS1L MUTATED        0      1      6      2      1
  MTSS1L WILD-TYPE     84     84     79     67     46
D958V5, multiclass
        clus
vv       MTSS1L MUTATED MTSS1L WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              6               79
  CLUS_4              2               67
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MTSS1L MUTATED        3      0      1      6
  MTSS1L WILD-TYPE     92     74    120     74
D958V6, multiclass
        clus
vv       MTSS1L MUTATED MTSS1L WILD-TYPE
  CLUS_1              3               92
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MTSS1L MUTATED        3      3      2      2      0      0
  MTSS1L WILD-TYPE     49     61     70    102     40     59
D958V7, multiclass
        clus
vv       MTSS1L MUTATED MTSS1L WILD-TYPE
  CLUS_1              3               49
  CLUS_2              3               61
  CLUS_3              2               70
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MTSS1L MUTATED        7      1      2
  MTSS1L WILD-TYPE    210     74     97
D958V8, multiclass
        clus
vv       MTSS1L MUTATED MTSS1L WILD-TYPE
  CLUS_1              7              210
  CLUS_2              1               74
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MTSS1L MUTATED        3      0      3
  MTSS1L WILD-TYPE    118    108     69
D958V9, multiclass
        clus
vv       MTSS1L MUTATED MTSS1L WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MTSS1L MUTATED        1      1      1      0      3
  MTSS1L WILD-TYPE     87     65     44     55     44
D958V10, multiclass
        clus
vv       MTSS1L MUTATED MTSS1L WILD-TYPE
  CLUS_1              1               87
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(959) Variable = MINA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MINA MUTATED        0      8      0      0
  MINA WILD-TYPE    204    129     47      3
D959V1, multiclass
        clus
vv       MINA MUTATED MINA WILD-TYPE
  CLUS_1            0            204
  CLUS_2            8            129
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MINA MUTATED        0      4      2      0      0
  MINA WILD-TYPE     39     92     42     88     80
D959V2, multiclass
        clus
vv       MINA MUTATED MINA WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MINA MUTATED        0      2      3      0      1
  MINA WILD-TYPE     26     77     70     82     57
D959V3, multiclass
        clus
vv       MINA MUTATED MINA WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MINA MUTATED        1      3      1      1
  MINA WILD-TYPE    126     48     70     68
D959V4, multiclass
        clus
vv       MINA MUTATED MINA WILD-TYPE
  CLUS_1            1            126
  CLUS_2            3             48
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MINA MUTATED        0      2      3      0      1
  MINA WILD-TYPE     84     83     82     69     46
D959V5, multiclass
        clus
vv       MINA MUTATED MINA WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            3             82
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MINA MUTATED        2      1      0      3
  MINA WILD-TYPE     93     73    121     77
D959V6, multiclass
        clus
vv       MINA MUTATED MINA WILD-TYPE
  CLUS_1            2             93
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MINA MUTATED        1      6      0      0      1      0
  MINA WILD-TYPE     51     58     72    104     39     59
D959V7, multiclass
        clus
vv       MINA MUTATED MINA WILD-TYPE
  CLUS_1            1             51
  CLUS_2            6             58
  CLUS_3            0             72
  CLUS_4            0            104
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MINA MUTATED        7      0      1
  MINA WILD-TYPE    210     75     98
D959V8, multiclass
        clus
vv       MINA MUTATED MINA WILD-TYPE
  CLUS_1            7            210
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MINA MUTATED        2      1      3
  MINA WILD-TYPE    119    107     69
D959V9, multiclass
        clus
vv       MINA MUTATED MINA WILD-TYPE
  CLUS_1            2            119
  CLUS_2            1            107
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MINA MUTATED        3      0      2      0      1
  MINA WILD-TYPE     85     66     43     55     46
D959V10, multiclass
        clus
vv       MINA MUTATED MINA WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(960) Variable = CYTH3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYTH3 MUTATED        0      5      1      0
  CYTH3 WILD-TYPE    204    132     46      3
D960V1, multiclass
        clus
vv       CYTH3 MUTATED CYTH3 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             5             132
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYTH3 MUTATED        1      1      0      0      0
  CYTH3 WILD-TYPE     38     95     44     88     80
D960V2, multiclass
[1] "Remove cluster labels:" "CYTH3 MUTATED"         
clus
  CYTH3 MUTATED CYTH3 WILD-TYPE 
              2             345 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8060 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8081 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J5      TCGA-BR-A4J6 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4437      TCGA-CG-4441 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-F1-A72C 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-FP-8631      TCGA-FP-A4BE      TCGA-FP-A4BF      TCGA-FP-A8CX 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-FP-A9TM      TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7133 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HF-7134      TCGA-HF-7136      TCGA-HF-A5NB      TCGA-HJ-7597 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8244      TCGA-HU-8249 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-8610 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-A4G2      TCGA-HU-A4G3      TCGA-HU-A4G6      TCGA-HU-A4G8 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-A4G9      TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-A4GH      TCGA-HU-A4GJ      TCGA-HU-A4GN      TCGA-HU-A4GP 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GY 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-A4H0      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-IN-8663      TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-IN-A6RN      TCGA-IN-A6RO      TCGA-IN-A6RP      TCGA-IN-A6RR 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-KB-A6F7      TCGA-KB-A93G      TCGA-KB-A93J      TCGA-MX-A5UG 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-MX-A663      TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-R5-A7ZF      TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-R5-A805      TCGA-RD-A7BS      TCGA-RD-A7BT      TCGA-RD-A7BW 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-RD-A7C1      TCGA-RD-A8MV      TCGA-RD-A8MW      TCGA-RD-A8N0 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-RD-A8N1      TCGA-RD-A8N2      TCGA-RD-A8N4      TCGA-RD-A8N5 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU      TCGA-VQ-A8DV 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-A8DZ      TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-A8P3      TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-A8PQ      TCGA-VQ-A91Q      TCGA-VQ-A91U      TCGA-VQ-A91V 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-A92D      TCGA-VQ-A94T      TCGA-VQ-AA64      TCGA-VQ-AA68 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6J      TCGA-VQ-AA6K 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-ZA-A8F6 
"CYTH3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYTH3 MUTATED        1      1      1      1      1
  CYTH3 WILD-TYPE     25     78     72     81     57
D960V3, multiclass
        clus
vv       CYTH3 MUTATED CYTH3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYTH3 MUTATED        2      1      1      1
  CYTH3 WILD-TYPE    125     50     70     68
D960V4, multiclass
        clus
vv       CYTH3 MUTATED CYTH3 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             1              50
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYTH3 MUTATED        1      2      1      2      0
  CYTH3 WILD-TYPE     83     83     84     67     47
D960V5, multiclass
        clus
vv       CYTH3 MUTATED CYTH3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             1              84
  CLUS_4             2              67
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CYTH3 MUTATED        4      2      0      0
  CYTH3 WILD-TYPE     91     72    121     80
D960V6, multiclass
        clus
vv       CYTH3 MUTATED CYTH3 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             0              80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CYTH3 MUTATED        0      3      0      0      2      1
  CYTH3 WILD-TYPE     52     61     72    104     38     58
D960V7, multiclass
        clus
vv       CYTH3 MUTATED CYTH3 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             3              61
  CLUS_3             0              72
  CLUS_4             0             104
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CYTH3 MUTATED        3      0      3
  CYTH3 WILD-TYPE    214     75     96
D960V8, multiclass
        clus
vv       CYTH3 MUTATED CYTH3 WILD-TYPE
  CLUS_1             3             214
  CLUS_2             0              75
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CYTH3 MUTATED        1      1      0
  CYTH3 WILD-TYPE    120    107     72
D960V9, multiclass
[1] "Remove cluster labels:" "CYTH3 MUTATED"         
clus
  CYTH3 MUTATED CYTH3 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-A6F0      TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-A74A      TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-FP-A4BE      TCGA-FP-A9TM      TCGA-HF-7131      TCGA-HF-7132 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HF-7134      TCGA-HF-7136      TCGA-HU-8238      TCGA-HU-8243 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-A4G3 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-A4GH      TCGA-HU-A4GJ      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-IN-A6RP      TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-KB-A6F7      TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A663 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CYTH3 MUTATED        1      0      0      0      1
  CYTH3 WILD-TYPE     87     66     45     55     46
D960V10, multiclass
[1] "Remove cluster labels:" "CYTH3 MUTATED"         
clus
  CYTH3 MUTATED CYTH3 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CD-A4MI      TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-6527      TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-6818      TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-8572      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-A6F0      TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-D7-A74A      TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-FP-7735      TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-FP-A4BE      TCGA-FP-A9TM      TCGA-HF-7131      TCGA-HF-7132 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HF-7134      TCGA-HF-7136      TCGA-HU-8238      TCGA-HU-8243 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-8602      TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-A4G3 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-A4G8      TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-A4GH      TCGA-HU-A4GJ      TCGA-HU-A4GN      TCGA-HU-A4GQ 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-IN-A6RP      TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-KB-A6F7      TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A663 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" "CYTH3 WILD-TYPE" 

Clustering(961) Variable = PCDH19 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH19 MUTATED        4     21      1      0
  PCDH19 WILD-TYPE    200    116     46      3
D961V1, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              4              200
  CLUS_2             21              116
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCDH19 MUTATED        2     13      2      0      3
  PCDH19 WILD-TYPE     37     83     42     88     77
D961V2, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              2               37
  CLUS_2             13               83
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCDH19 MUTATED        0      7      4      6      7
  PCDH19 WILD-TYPE     26     72     69     76     51
D961V3, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              7               72
  CLUS_3              4               69
  CLUS_4              6               76
  CLUS_5              7               51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH19 MUTATED        6     10      4      4
  PCDH19 WILD-TYPE    121     41     67     65
D961V4, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              6              121
  CLUS_2             10               41
  CLUS_3              4               67
  CLUS_4              4               65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCDH19 MUTATED        0      4     14      4      4
  PCDH19 WILD-TYPE     84     81     71     65     43
D961V5, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              4               81
  CLUS_3             14               71
  CLUS_4              4               65
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PCDH19 MUTATED        8      5      3     10
  PCDH19 WILD-TYPE     87     69    118     70
D961V6, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              8               87
  CLUS_2              5               69
  CLUS_3              3              118
  CLUS_4             10               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PCDH19 MUTATED        4     11      4      4      3      0
  PCDH19 WILD-TYPE     48     53     68    100     37     59
D961V7, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              4               48
  CLUS_2             11               53
  CLUS_3              4               68
  CLUS_4              4              100
  CLUS_5              3               37
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCDH19 MUTATED       21      3      2
  PCDH19 WILD-TYPE    196     72     97
D961V8, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1             21              196
  CLUS_2              3               72
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PCDH19 MUTATED        5      6      7
  PCDH19 WILD-TYPE    116    102     65
D961V9, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              6              102
  CLUS_3              7               65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PCDH19 MUTATED        8      3      4      0      3
  PCDH19 WILD-TYPE     80     63     41     55     44
D961V10, multiclass
        clus
vv       PCDH19 MUTATED PCDH19 WILD-TYPE
  CLUS_1              8               80
  CLUS_2              3               63
  CLUS_3              4               41
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(962) Variable = C11ORF88 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF88 MUTATED        1      6      0      0
  C11ORF88 WILD-TYPE    203    131     47      3
D962V1, multiclass
        clus
vv       C11ORF88 MUTATED C11ORF88 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                6                131
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF88 MUTATED        1      2      1      1      1
  C11ORF88 WILD-TYPE     38     94     43     87     79
D962V2, multiclass
        clus
vv       C11ORF88 MUTATED C11ORF88 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                2                 94
  CLUS_3                1                 43
  CLUS_4                1                 87
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF88 MUTATED        1      1      1      1      3
  C11ORF88 WILD-TYPE     25     78     72     81     55
D962V3, multiclass
        clus
vv       C11ORF88 MUTATED C11ORF88 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                 78
  CLUS_3                1                 72
  CLUS_4                1                 81
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF88 MUTATED        2      4      0      1
  C11ORF88 WILD-TYPE    125     47     71     68
D962V4, multiclass
        clus
vv       C11ORF88 MUTATED C11ORF88 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                4                 47
  CLUS_3                0                 71
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF88 MUTATED        0      1      3      1      1
  C11ORF88 WILD-TYPE     84     84     82     68     46
D962V5, multiclass
        clus
vv       C11ORF88 MUTATED C11ORF88 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                3                 82
  CLUS_4                1                 68
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF88 MUTATED        1      0      2      3
  C11ORF88 WILD-TYPE     94     74    119     77
D962V6, multiclass
        clus
vv       C11ORF88 MUTATED C11ORF88 WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                0                 74
  CLUS_3                2                119
  CLUS_4                3                 77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C11ORF88 MUTATED        3      2      2      0      0      0
  C11ORF88 WILD-TYPE     49     62     70    104     40     59
D962V7, multiclass
        clus
vv       C11ORF88 MUTATED C11ORF88 WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                2                 62
  CLUS_3                2                 70
  CLUS_4                0                104
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF88 MUTATED        6      0      1
  C11ORF88 WILD-TYPE    211     75     98
D962V8, multiclass
        clus
vv       C11ORF88 MUTATED C11ORF88 WILD-TYPE
  CLUS_1                6                211
  CLUS_2                0                 75
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF88 MUTATED        4      0      1
  C11ORF88 WILD-TYPE    117    108     71
D962V9, multiclass
        clus
vv       C11ORF88 MUTATED C11ORF88 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                0                108
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF88 MUTATED        4      0      1      0      0
  C11ORF88 WILD-TYPE     84     66     44     55     47
D962V10, multiclass
        clus
vv       C11ORF88 MUTATED C11ORF88 WILD-TYPE
  CLUS_1                4                 84
  CLUS_2                0                 66
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(963) Variable = MON2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MON2 MUTATED        0     15      1      0
  MON2 WILD-TYPE    204    122     46      3
D963V1, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            0            204
  CLUS_2           15            122
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MON2 MUTATED        2      5      3      0      1
  MON2 WILD-TYPE     37     91     41     88     79
D963V2, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            5             91
  CLUS_3            3             41
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MON2 MUTATED        0      6      4      4      1
  MON2 WILD-TYPE     26     73     69     78     57
D963V3, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            6             73
  CLUS_3            4             69
  CLUS_4            4             78
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MON2 MUTATED        0      9      3      3
  MON2 WILD-TYPE    127     42     68     66
D963V4, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            9             42
  CLUS_3            3             68
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MON2 MUTATED        0      3      8      1      2
  MON2 WILD-TYPE     84     82     77     68     45
D963V5, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            8             77
  CLUS_4            1             68
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MON2 MUTATED        4      2      2      6
  MON2 WILD-TYPE     91     72    119     74
D963V6, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            2             72
  CLUS_3            2            119
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MON2 MUTATED        6      7      0      3      0      0
  MON2 WILD-TYPE     46     57     72    101     40     59
D963V7, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            6             46
  CLUS_2            7             57
  CLUS_3            0             72
  CLUS_4            3            101
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MON2 MUTATED       10      5      1
  MON2 WILD-TYPE    207     70     98
D963V8, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1           10            207
  CLUS_2            5             70
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MON2 MUTATED        5      1      4
  MON2 WILD-TYPE    116    107     68
D963V9, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            1            107
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MON2 MUTATED        2      1      4      0      3
  MON2 WILD-TYPE     86     65     41     55     44
D963V10, multiclass
        clus
vv       MON2 MUTATED MON2 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            1             65
  CLUS_3            4             41
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(964) Variable = AKD1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKD1 MUTATED        1     12      2      0
  AKD1 WILD-TYPE    203    125     45      3
D964V1, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            1            203
  CLUS_2           12            125
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKD1 MUTATED        1      8      1      0      3
  AKD1 WILD-TYPE     38     88     43     88     77
D964V2, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            8             88
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            3             77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKD1 MUTATED        1      1      6      1      4
  AKD1 WILD-TYPE     25     78     67     81     54
D964V3, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             78
  CLUS_3            6             67
  CLUS_4            1             81
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKD1 MUTATED        5      7      1      0
  AKD1 WILD-TYPE    122     44     70     69
D964V4, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            5            122
  CLUS_2            7             44
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKD1 MUTATED        0      2      9      2      2
  AKD1 WILD-TYPE     84     83     76     67     45
D964V5, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            9             76
  CLUS_4            2             67
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKD1 MUTATED        4      2      2      7
  AKD1 WILD-TYPE     91     72    119     73
D964V6, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            2             72
  CLUS_3            2            119
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AKD1 MUTATED        5      5      1      3      1      0
  AKD1 WILD-TYPE     47     59     71    101     39     59
D964V7, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            5             47
  CLUS_2            5             59
  CLUS_3            1             71
  CLUS_4            3            101
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKD1 MUTATED       12      1      2
  AKD1 WILD-TYPE    205     74     97
D964V8, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1           12            205
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKD1 MUTATED        6      3      3
  AKD1 WILD-TYPE    115    105     69
D964V9, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            6            115
  CLUS_2            3            105
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKD1 MUTATED        3      2      3      0      4
  AKD1 WILD-TYPE     85     64     42     55     43
D964V10, multiclass
        clus
vv       AKD1 MUTATED AKD1 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            2             64
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(965) Variable = EXOSC8 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOSC8 MUTATED        1      5      0      0
  EXOSC8 WILD-TYPE    203    132     47      3
D965V1, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC8 MUTATED        0      2      1      0      0
  EXOSC8 WILD-TYPE     39     94     43     88     80
D965V2, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              2               94
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC8 MUTATED        0      3      1      0      1
  EXOSC8 WILD-TYPE     26     76     72     82     57
D965V3, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOSC8 MUTATED        0      3      2      0
  EXOSC8 WILD-TYPE    127     48     69     69
D965V4, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              3               48
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC8 MUTATED        0      1      5      0      0
  EXOSC8 WILD-TYPE     84     84     80     69     47
D965V5, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              5               80
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOSC8 MUTATED        1      1      0      4
  EXOSC8 WILD-TYPE     94     73    121     76
D965V6, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EXOSC8 MUTATED        0      4      1      1      0      0
  EXOSC8 WILD-TYPE     52     60     71    103     40     59
D965V7, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EXOSC8 MUTATED        6      0      0
  EXOSC8 WILD-TYPE    211     75     99
D965V8, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EXOSC8 MUTATED        2      0      1
  EXOSC8 WILD-TYPE    119    108     71
D965V9, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC8 MUTATED        2      0      0      0      1
  EXOSC8 WILD-TYPE     86     66     45     55     46
D965V10, multiclass
        clus
vv       EXOSC8 MUTATED EXOSC8 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              0               45
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(966) Variable = CDH11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH11 MUTATED       14     13      4      0
  CDH11 WILD-TYPE    190    124     43      3
D966V1, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1            14             190
  CLUS_2            13             124
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH11 MUTATED        2     15      3      8      0
  CDH11 WILD-TYPE     37     81     41     80     80
D966V2, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            15              81
  CLUS_3             3              41
  CLUS_4             8              80
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH11 MUTATED        1      7      7      5      6
  CDH11 WILD-TYPE     25     72     66     77     52
D966V3, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             7              72
  CLUS_3             7              66
  CLUS_4             5              77
  CLUS_5             6              52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH11 MUTATED        9      8      4      5
  CDH11 WILD-TYPE    118     43     67     64
D966V4, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             9             118
  CLUS_2             8              43
  CLUS_3             4              67
  CLUS_4             5              64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH11 MUTATED        5      1     18      5      3
  CDH11 WILD-TYPE     79     84     67     64     44
D966V5, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             5              79
  CLUS_2             1              84
  CLUS_3            18              67
  CLUS_4             5              64
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDH11 MUTATED        7      4      9     12
  CDH11 WILD-TYPE     88     70    112     68
D966V6, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             4              70
  CLUS_3             9             112
  CLUS_4            12              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDH11 MUTATED        7      8      7      3      1      6
  CDH11 WILD-TYPE     45     56     65    101     39     53
D966V7, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             7              45
  CLUS_2             8              56
  CLUS_3             7              65
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             6              53
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH11 MUTATED       21      2      9
  CDH11 WILD-TYPE    196     73     90
D966V8, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1            21             196
  CLUS_2             2              73
  CLUS_3             9              90
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CDH11 MUTATED       11      6      9
  CDH11 WILD-TYPE    110    102     63
D966V9, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1            11             110
  CLUS_2             6             102
  CLUS_3             9              63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDH11 MUTATED        6      2      6      5      7
  CDH11 WILD-TYPE     82     64     39     50     40
D966V10, multiclass
        clus
vv       CDH11 MUTATED CDH11 WILD-TYPE
  CLUS_1             6              82
  CLUS_2             2              64
  CLUS_3             6              39
  CLUS_4             5              50
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(967) Variable = HCRTR1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCRTR1 MUTATED        1      5      0      0
  HCRTR1 WILD-TYPE    203    132     47      3
D967V1, multiclass
        clus
vv       HCRTR1 MUTATED HCRTR1 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HCRTR1 MUTATED        0      3      0      0      1
  HCRTR1 WILD-TYPE     39     93     44     88     79
D967V2, multiclass
        clus
vv       HCRTR1 MUTATED HCRTR1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HCRTR1 MUTATED        0      2      0      1      1
  HCRTR1 WILD-TYPE     26     77     73     81     57
D967V3, multiclass
        clus
vv       HCRTR1 MUTATED HCRTR1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              0               73
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCRTR1 MUTATED        0      1      3      0
  HCRTR1 WILD-TYPE    127     50     68     69
D967V4, multiclass
        clus
vv       HCRTR1 MUTATED HCRTR1 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              1               50
  CLUS_3              3               68
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HCRTR1 MUTATED        0      3      3      0      0
  HCRTR1 WILD-TYPE     84     82     82     69     47
D967V5, multiclass
        clus
vv       HCRTR1 MUTATED HCRTR1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HCRTR1 MUTATED        1      2      1      2
  HCRTR1 WILD-TYPE     94     72    120     78
D967V6, multiclass
        clus
vv       HCRTR1 MUTATED HCRTR1 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HCRTR1 MUTATED        0      3      1      1      1      0
  HCRTR1 WILD-TYPE     52     61     71    103     39     59
D967V7, multiclass
        clus
vv       HCRTR1 MUTATED HCRTR1 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HCRTR1 MUTATED        3      1      2
  HCRTR1 WILD-TYPE    214     74     97
D967V8, multiclass
        clus
vv       HCRTR1 MUTATED HCRTR1 WILD-TYPE
  CLUS_1              3              214
  CLUS_2              1               74
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HCRTR1 MUTATED        0      2      2
  HCRTR1 WILD-TYPE    121    106     70
D967V9, multiclass
        clus
vv       HCRTR1 MUTATED HCRTR1 WILD-TYPE
  CLUS_1              0              121
  CLUS_2              2              106
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HCRTR1 MUTATED        1      1      1      0      1
  HCRTR1 WILD-TYPE     87     65     44     55     46
D967V10, multiclass
        clus
vv       HCRTR1 MUTATED HCRTR1 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(968) Variable = ANKRD12 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD12 MUTATED        3     15      2      0
  ANKRD12 WILD-TYPE    201    122     45      3
D968V1, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               3               201
  CLUS_2              15               122
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD12 MUTATED        2     11      3      1      2
  ANKRD12 WILD-TYPE     37     85     41     87     78
D968V2, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               2                37
  CLUS_2              11                85
  CLUS_3               3                41
  CLUS_4               1                87
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD12 MUTATED        1      7      2      1      5
  ANKRD12 WILD-TYPE     25     72     71     81     53
D968V3, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               7                72
  CLUS_3               2                71
  CLUS_4               1                81
  CLUS_5               5                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD12 MUTATED        1     10      4      1
  ANKRD12 WILD-TYPE    126     41     67     68
D968V4, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               1               126
  CLUS_2              10                41
  CLUS_3               4                67
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD12 MUTATED        1      4      8      3      3
  ANKRD12 WILD-TYPE     83     81     77     66     44
D968V5, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               4                81
  CLUS_3               8                77
  CLUS_4               3                66
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD12 MUTATED        3      2      1     13
  ANKRD12 WILD-TYPE     92     72    120     67
D968V6, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               2                72
  CLUS_3               1               120
  CLUS_4              13                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANKRD12 MUTATED        6      6      5      3      0      0
  ANKRD12 WILD-TYPE     46     58     67    101     40     59
D968V7, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               6                46
  CLUS_2               6                58
  CLUS_3               5                67
  CLUS_4               3               101
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD12 MUTATED       16      2      2
  ANKRD12 WILD-TYPE    201     73     97
D968V8, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1              16               201
  CLUS_2               2                73
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD12 MUTATED        9      3      5
  ANKRD12 WILD-TYPE    112    105     67
D968V9, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               9               112
  CLUS_2               3               105
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD12 MUTATED        4      2      3      0      8
  ANKRD12 WILD-TYPE     84     64     42     55     39
D968V10, multiclass
        clus
vv       ANKRD12 MUTATED ANKRD12 WILD-TYPE
  CLUS_1               4                84
  CLUS_2               2                64
  CLUS_3               3                42
  CLUS_4               0                55
  CLUS_5               8                39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(969) Variable = BMPR1B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR1B MUTATED        0      6      3      0
  BMPR1B WILD-TYPE    204    131     44      3
D969V1, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              0              204
  CLUS_2              6              131
  CLUS_3              3               44
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMPR1B MUTATED        0      5      2      0      0
  BMPR1B WILD-TYPE     39     91     42     88     80
D969V2, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMPR1B MUTATED        0      1      4      1      1
  BMPR1B WILD-TYPE     26     78     69     81     57
D969V3, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR1B MUTATED        2      2      1      2
  BMPR1B WILD-TYPE    125     49     70     67
D969V4, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              2              125
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMPR1B MUTATED        0      2      3      2      2
  BMPR1B WILD-TYPE     84     83     82     67     45
D969V5, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              3               82
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BMPR1B MUTATED        2      1      1      5
  BMPR1B WILD-TYPE     93     73    120     75
D969V6, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BMPR1B MUTATED        3      3      3      0      0      0
  BMPR1B WILD-TYPE     49     61     69    104     40     59
D969V7, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              3               49
  CLUS_2              3               61
  CLUS_3              3               69
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BMPR1B MUTATED        9      0      0
  BMPR1B WILD-TYPE    208     75     99
D969V8, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              9              208
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  BMPR1B MUTATED        3      0      1
  BMPR1B WILD-TYPE    118    108     71
D969V9, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BMPR1B MUTATED        2      0      0      0      2
  BMPR1B WILD-TYPE     86     66     45     55     45
D969V10, multiclass
        clus
vv       BMPR1B MUTATED BMPR1B WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              0               45
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(970) Variable = CRYBG3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYBG3 MUTATED        1     12      0      0
  CRYBG3 WILD-TYPE    203    125     47      3
D970V1, multiclass
        clus
vv       CRYBG3 MUTATED CRYBG3 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             12              125
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRYBG3 MUTATED        2      8      3      0      1
  CRYBG3 WILD-TYPE     37     88     41     88     79
D970V2, multiclass
        clus
vv       CRYBG3 MUTATED CRYBG3 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              8               88
  CLUS_3              3               41
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRYBG3 MUTATED        1      4      4      1      1
  CRYBG3 WILD-TYPE     25     75     69     81     57
D970V3, multiclass
        clus
vv       CRYBG3 MUTATED CRYBG3 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              4               75
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYBG3 MUTATED        2      5      3      1
  CRYBG3 WILD-TYPE    125     46     68     68
D970V4, multiclass
        clus
vv       CRYBG3 MUTATED CRYBG3 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              5               46
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRYBG3 MUTATED        0      2      7      3      2
  CRYBG3 WILD-TYPE     84     83     78     66     45
D970V5, multiclass
        clus
vv       CRYBG3 MUTATED CRYBG3 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              7               78
  CLUS_4              3               66
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYBG3 MUTATED        4      2      2      6
  CRYBG3 WILD-TYPE     91     72    119     74
D970V6, multiclass
        clus
vv       CRYBG3 MUTATED CRYBG3 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              2               72
  CLUS_3              2              119
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CRYBG3 MUTATED        4      2      5      1      2      0
  CRYBG3 WILD-TYPE     48     62     67    103     38     59
D970V7, multiclass
        clus
vv       CRYBG3 MUTATED CRYBG3 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              2               62
  CLUS_3              5               67
  CLUS_4              1              103
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CRYBG3 MUTATED       13      0      1
  CRYBG3 WILD-TYPE    204     75     98
D970V8, multiclass
        clus
vv       CRYBG3 MUTATED CRYBG3 WILD-TYPE
  CLUS_1             13              204
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CRYBG3 MUTATED        8      1      2
  CRYBG3 WILD-TYPE    113    107     70
D970V9, multiclass
        clus
vv       CRYBG3 MUTATED CRYBG3 WILD-TYPE
  CLUS_1              8              113
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRYBG3 MUTATED        5      0      2      0      4
  CRYBG3 WILD-TYPE     83     66     43     55     43
D970V10, multiclass
        clus
vv       CRYBG3 MUTATED CRYBG3 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(971) Variable = KIDINS220 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIDINS220 MUTATED        4     11      3      0
  KIDINS220 WILD-TYPE    200    126     44      3
D971V1, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 4                 200
  CLUS_2                11                 126
  CLUS_3                 3                  44
  CLUS_4                 0                   3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIDINS220 MUTATED        2      8      0      2      1
  KIDINS220 WILD-TYPE     37     88     44     86     79
D971V2, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 2                  37
  CLUS_2                 8                  88
  CLUS_3                 0                  44
  CLUS_4                 2                  86
  CLUS_5                 1                  79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIDINS220 MUTATED        3      5      3      0      3
  KIDINS220 WILD-TYPE     23     74     70     82     55
D971V3, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 3                  23
  CLUS_2                 5                  74
  CLUS_3                 3                  70
  CLUS_4                 0                  82
  CLUS_5                 3                  55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIDINS220 MUTATED        4      6      4      0
  KIDINS220 WILD-TYPE    123     45     67     69
D971V4, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 4                 123
  CLUS_2                 6                  45
  CLUS_3                 4                  67
  CLUS_4                 0                  69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIDINS220 MUTATED        2      2      7      4      2
  KIDINS220 WILD-TYPE     82     83     78     65     45
D971V5, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 2                  82
  CLUS_2                 2                  83
  CLUS_3                 7                  78
  CLUS_4                 4                  65
  CLUS_5                 2                  45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIDINS220 MUTATED        7      1      2      7
  KIDINS220 WILD-TYPE     88     73    119     73
D971V6, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 7                  88
  CLUS_2                 1                  73
  CLUS_3                 2                 119
  CLUS_4                 7                  73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIDINS220 MUTATED        4      6      5      0      1      2
  KIDINS220 WILD-TYPE     48     58     67    104     39     57
D971V7, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 4                  48
  CLUS_2                 6                  58
  CLUS_3                 5                  67
  CLUS_4                 0                 104
  CLUS_5                 1                  39
  CLUS_6                 2                  57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KIDINS220 MUTATED       15      0      3
  KIDINS220 WILD-TYPE    202     75     96
D971V8, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                15                 202
  CLUS_2                 0                  75
  CLUS_3                 3                  96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  KIDINS220 MUTATED        6      0      5
  KIDINS220 WILD-TYPE    115    108     67
D971V9, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 6                 115
  CLUS_2                 0                 108
  CLUS_3                 5                  67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIDINS220 MUTATED        2      0      3      0      6
  KIDINS220 WILD-TYPE     86     66     42     55     41
D971V10, multiclass
        clus
vv       KIDINS220 MUTATED KIDINS220 WILD-TYPE
  CLUS_1                 2                  86
  CLUS_2                 0                  66
  CLUS_3                 3                  42
  CLUS_4                 0                  55
  CLUS_5                 6                  41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(972) Variable = INSM2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSM2 MUTATED        1     11      0      0
  INSM2 WILD-TYPE    203    126     47      3
D972V1, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             1             203
  CLUS_2            11             126
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INSM2 MUTATED        0      7      2      1      1
  INSM2 WILD-TYPE     39     89     42     87     79
D972V2, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              89
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INSM2 MUTATED        1      4      5      1      0
  INSM2 WILD-TYPE     25     75     68     81     58
D972V3, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSM2 MUTATED        2      5      2      2
  INSM2 WILD-TYPE    125     46     69     67
D972V4, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INSM2 MUTATED        0      2      6      0      3
  INSM2 WILD-TYPE     84     83     79     69     44
D972V5, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             6              79
  CLUS_4             0              69
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  INSM2 MUTATED        1      3      1      6
  INSM2 WILD-TYPE     94     71    120     74
D972V6, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             3              71
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  INSM2 MUTATED        6      2      0      2      2      0
  INSM2 WILD-TYPE     46     62     72    102     38     59
D972V7, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             2              62
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INSM2 MUTATED        7      1      4
  INSM2 WILD-TYPE    210     74     95
D972V8, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             1              74
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  INSM2 MUTATED        3      3      4
  INSM2 WILD-TYPE    118    105     68
D972V9, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             3             105
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  INSM2 MUTATED        3      1      2      1      3
  INSM2 WILD-TYPE     85     65     43     54     44
D972V10, multiclass
        clus
vv       INSM2 MUTATED INSM2 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(973) Variable = ELOVL2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELOVL2 MUTATED        2      5      0      0
  ELOVL2 WILD-TYPE    202    132     47      3
D973V1, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELOVL2 MUTATED        0      3      2      1      0
  ELOVL2 WILD-TYPE     39     93     42     87     80
D973V2, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELOVL2 MUTATED        0      1      3      0      2
  ELOVL2 WILD-TYPE     26     78     70     82     56
D973V3, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELOVL2 MUTATED        1      4      0      1
  ELOVL2 WILD-TYPE    126     47     71     68
D973V4, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              4               47
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELOVL2 MUTATED        2      1      2      1      0
  ELOVL2 WILD-TYPE     82     84     83     68     47
D973V5, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              1               84
  CLUS_3              2               83
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ELOVL2 MUTATED        2      1      2      1
  ELOVL2 WILD-TYPE     93     73    119     79
D973V6, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ELOVL2 MUTATED        1      3      1      0      0      2
  ELOVL2 WILD-TYPE     51     61     71    104     40     57
D973V7, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ELOVL2 MUTATED        5      0      2
  ELOVL2 WILD-TYPE    212     75     97
D973V8, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              0               75
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ELOVL2 MUTATED        2      0      3
  ELOVL2 WILD-TYPE    119    108     69
D973V9, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ELOVL2 MUTATED        2      0      1      2      0
  ELOVL2 WILD-TYPE     86     66     44     53     47
D973V10, multiclass
        clus
vv       ELOVL2 MUTATED ELOVL2 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              2               53
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(974) Variable = GON4L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GON4L MUTATED        0     11      1      0
  GON4L WILD-TYPE    204    126     46      3
D974V1, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             0             204
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GON4L MUTATED        0      9      2      0      0
  GON4L WILD-TYPE     39     87     42     88     80
D974V2, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             0              39
  CLUS_2             9              87
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GON4L MUTATED        0      4      6      1      0
  GON4L WILD-TYPE     26     75     67     81     58
D974V3, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             6              67
  CLUS_4             1              81
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GON4L MUTATED        1      6      3      1
  GON4L WILD-TYPE    126     45     68     68
D974V4, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             1             126
  CLUS_2             6              45
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GON4L MUTATED        0      1      9      0      1
  GON4L WILD-TYPE     84     84     76     69     46
D974V5, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             9              76
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GON4L MUTATED        1      4      0      6
  GON4L WILD-TYPE     94     70    121     74
D974V6, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             1              94
  CLUS_2             4              70
  CLUS_3             0             121
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GON4L MUTATED        2      5      2      2      1      0
  GON4L WILD-TYPE     50     59     70    102     39     59
D974V7, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             2              50
  CLUS_2             5              59
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GON4L MUTATED       10      2      0
  GON4L WILD-TYPE    207     73     99
D974V8, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1            10             207
  CLUS_2             2              73
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GON4L MUTATED        3      1      5
  GON4L WILD-TYPE    118    107     67
D974V9, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GON4L MUTATED        3      1      3      0      2
  GON4L WILD-TYPE     85     65     42     55     45
D974V10, multiclass
        clus
vv       GON4L MUTATED GON4L WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(975) Variable = MSL3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSL3 MUTATED        1      6      2      0
  MSL3 WILD-TYPE    203    131     45      3
D975V1, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            6            131
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MSL3 MUTATED        3      2      2      0      2
  MSL3 WILD-TYPE     36     94     42     88     78
D975V2, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            3             36
  CLUS_2            2             94
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MSL3 MUTATED        1      2      1      1      3
  MSL3 WILD-TYPE     25     77     72     81     55
D975V3, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            2             77
  CLUS_3            1             72
  CLUS_4            1             81
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSL3 MUTATED        5      1      2      0
  MSL3 WILD-TYPE    122     50     69     69
D975V4, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            5            122
  CLUS_2            1             50
  CLUS_3            2             69
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MSL3 MUTATED        0      2      6      0      1
  MSL3 WILD-TYPE     84     83     79     69     46
D975V5, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            6             79
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MSL3 MUTATED        0      1      3      5
  MSL3 WILD-TYPE     95     73    118     75
D975V6, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            0             95
  CLUS_2            1             73
  CLUS_3            3            118
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MSL3 MUTATED        2      3      2      2      0      0
  MSL3 WILD-TYPE     50     61     70    102     40     59
D975V7, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            3             61
  CLUS_3            2             70
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSL3 MUTATED        7      2      0
  MSL3 WILD-TYPE    210     73     99
D975V8, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            2             73
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  MSL3 MUTATED        2      2      3
  MSL3 WILD-TYPE    119    106     69
D975V9, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            2            106
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MSL3 MUTATED        1      2      2      0      2
  MSL3 WILD-TYPE     87     64     43     55     45
D975V10, multiclass
        clus
vv       MSL3 MUTATED MSL3 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            2             64
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(976) Variable = FANCA MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCA MUTATED        2      9      1      0
  FANCA WILD-TYPE    202    128     46      3
D976V1, multiclass
        clus
vv       FANCA MUTATED FANCA WILD-TYPE
  CLUS_1             2             202
  CLUS_2             9             128
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANCA MUTATED        1      5      2      0      1
  FANCA WILD-TYPE     38     91     42     88     79
D976V2, multiclass
        clus
vv       FANCA MUTATED FANCA WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANCA MUTATED        1      5      4      1      0
  FANCA WILD-TYPE     25     74     69     81     58
D976V3, multiclass
        clus
vv       FANCA MUTATED FANCA WILD-TYPE
  CLUS_1             1              25
  CLUS_2             5              74
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCA MUTATED        2      8      1      0
  FANCA WILD-TYPE    125     43     70     69
D976V4, multiclass
        clus
vv       FANCA MUTATED FANCA WILD-TYPE
  CLUS_1             2             125
  CLUS_2             8              43
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANCA MUTATED        1      1      7      2      0
  FANCA WILD-TYPE     83     84     78     67     47
D976V5, multiclass
        clus
vv       FANCA MUTATED FANCA WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             7              78
  CLUS_4             2              67
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FANCA MUTATED        4      2      1      4
  FANCA WILD-TYPE     91     72    120     76
D976V6, multiclass
        clus
vv       FANCA MUTATED FANCA WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FANCA MUTATED        1      4      2      2      2      1
  FANCA WILD-TYPE     51     60     70    102     38     58
D976V7, multiclass
        clus
vv       FANCA MUTATED FANCA WILD-TYPE
  CLUS_1             1              51
  CLUS_2             4              60
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANCA MUTATED       10      1      1
  FANCA WILD-TYPE    207     74     98
D976V8, multiclass
        clus
vv       FANCA MUTATED FANCA WILD-TYPE
  CLUS_1            10             207
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FANCA MUTATED        6      1      2
  FANCA WILD-TYPE    115    107     70
D976V9, multiclass
        clus
vv       FANCA MUTATED FANCA WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FANCA MUTATED        2      1      2      0      4
  FANCA WILD-TYPE     86     65     43     55     43
D976V10, multiclass
        clus
vv       FANCA MUTATED FANCA WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(977) Variable = SMPD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMPD1 MUTATED        0      5      1      0
  SMPD1 WILD-TYPE    204    132     46      3
D977V1, multiclass
        clus
vv       SMPD1 MUTATED SMPD1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             5             132
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMPD1 MUTATED        2      2      0      0      0
  SMPD1 WILD-TYPE     37     94     44     88     80
D977V2, multiclass
        clus
vv       SMPD1 MUTATED SMPD1 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             2              94
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMPD1 MUTATED        0      1      3      0      2
  SMPD1 WILD-TYPE     26     78     70     82     56
D977V3, multiclass
        clus
vv       SMPD1 MUTATED SMPD1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMPD1 MUTATED        1      4      1      0
  SMPD1 WILD-TYPE    126     47     70     69
D977V4, multiclass
        clus
vv       SMPD1 MUTATED SMPD1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMPD1 MUTATED        0      1      3      1      1
  SMPD1 WILD-TYPE     84     84     82     68     46
D977V5, multiclass
        clus
vv       SMPD1 MUTATED SMPD1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMPD1 MUTATED        2      0      0      4
  SMPD1 WILD-TYPE     93     74    121     76
D977V6, multiclass
        clus
vv       SMPD1 MUTATED SMPD1 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMPD1 MUTATED        2      2      1      1      0      0
  SMPD1 WILD-TYPE     50     62     71    103     40     59
D977V7, multiclass
        clus
vv       SMPD1 MUTATED SMPD1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMPD1 MUTATED        6      0      0
  SMPD1 WILD-TYPE    211     75     99
D977V8, multiclass
        clus
vv       SMPD1 MUTATED SMPD1 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SMPD1 MUTATED        3      1      0
  SMPD1 WILD-TYPE    118    107     72
D977V9, multiclass
        clus
vv       SMPD1 MUTATED SMPD1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMPD1 MUTATED        3      0      0      0      1
  SMPD1 WILD-TYPE     85     66     45     55     46
D977V10, multiclass
        clus
vv       SMPD1 MUTATED SMPD1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(978) Variable = IKBIP MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBIP MUTATED        1      2      0      0
  IKBIP WILD-TYPE    203    135     47      3
D978V1, multiclass
        clus
vv       IKBIP MUTATED IKBIP WILD-TYPE
  CLUS_1             1             203
  CLUS_2             2             135
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IKBIP MUTATED        0      3      0      0      0
  IKBIP WILD-TYPE     39     93     44     88     80
D978V2, multiclass
        clus
vv       IKBIP MUTATED IKBIP WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IKBIP MUTATED        0      0      1      0      2
  IKBIP WILD-TYPE     26     79     72     82     56
D978V3, multiclass
        clus
vv       IKBIP MUTATED IKBIP WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              79
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBIP MUTATED        1      2      0      0
  IKBIP WILD-TYPE    126     49     71     69
D978V4, multiclass
        clus
vv       IKBIP MUTATED IKBIP WILD-TYPE
  CLUS_1             1             126
  CLUS_2             2              49
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IKBIP MUTATED        0      0      2      1      0
  IKBIP WILD-TYPE     84     85     83     68     47
D978V5, multiclass
        clus
vv       IKBIP MUTATED IKBIP WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             2              83
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IKBIP MUTATED        1      0      1      1
  IKBIP WILD-TYPE     94     74    120     79
D978V6, multiclass
        clus
vv       IKBIP MUTATED IKBIP WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IKBIP MUTATED        2      1      0      0      0      0
  IKBIP WILD-TYPE     50     63     72    104     40     59
D978V7, multiclass
        clus
vv       IKBIP MUTATED IKBIP WILD-TYPE
  CLUS_1             2              50
  CLUS_2             1              63
  CLUS_3             0              72
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKBIP MUTATED        3      0      0
  IKBIP WILD-TYPE    214     75     99
D978V8, multiclass
        clus
vv       IKBIP MUTATED IKBIP WILD-TYPE
  CLUS_1             3             214
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IKBIP MUTATED        2      0      1
  IKBIP WILD-TYPE    119    108     71
D978V9, multiclass
        clus
vv       IKBIP MUTATED IKBIP WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IKBIP MUTATED        1      0      1      0      1
  IKBIP WILD-TYPE     87     66     44     55     46
D978V10, multiclass
        clus
vv       IKBIP MUTATED IKBIP WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(979) Variable = LEFTY1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEFTY1 MUTATED        2      1      0      0
  LEFTY1 WILD-TYPE    202    136     47      3
D979V1, multiclass
        clus
vv       LEFTY1 MUTATED LEFTY1 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              1              136
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LEFTY1 MUTATED        1      2      0      0      0
  LEFTY1 WILD-TYPE     38     94     44     88     80
D979V2, multiclass
        clus
vv       LEFTY1 MUTATED LEFTY1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              2               94
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LEFTY1 MUTATED        0      0      2      0      1
  LEFTY1 WILD-TYPE     26     79     71     82     57
D979V3, multiclass
        clus
vv       LEFTY1 MUTATED LEFTY1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               79
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEFTY1 MUTATED        1      1      0      1
  LEFTY1 WILD-TYPE    126     50     71     68
D979V4, multiclass
        clus
vv       LEFTY1 MUTATED LEFTY1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              1               50
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LEFTY1 MUTATED        1      0      2      0      0
  LEFTY1 WILD-TYPE     83     85     83     69     47
D979V5, multiclass
        clus
vv       LEFTY1 MUTATED LEFTY1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               85
  CLUS_3              2               83
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LEFTY1 MUTATED        0      0      2      1
  LEFTY1 WILD-TYPE     95     74    119     79
D979V6, multiclass
        clus
vv       LEFTY1 MUTATED LEFTY1 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              0               74
  CLUS_3              2              119
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LEFTY1 MUTATED        2      0      0      1      0      0
  LEFTY1 WILD-TYPE     50     64     72    103     40     59
D979V7, multiclass
        clus
vv       LEFTY1 MUTATED LEFTY1 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              0               64
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LEFTY1 MUTATED        2      1      0
  LEFTY1 WILD-TYPE    215     74     99
D979V8, multiclass
        clus
vv       LEFTY1 MUTATED LEFTY1 WILD-TYPE
  CLUS_1              2              215
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LEFTY1 MUTATED        1      0      1
  LEFTY1 WILD-TYPE    120    108     71
D979V9, multiclass
[1] "Remove cluster labels:" "LEFTY1 MUTATED"        
clus
  LEFTY1 MUTATED LEFTY1 WILD-TYPE 
               2              299 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-6452       TCGA-BR-6453 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8060       TCGA-BR-8077       TCGA-BR-8078 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8485 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8590 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J5       TCGA-BR-A4J6 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CD-A4MI       TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-D7-A6ET 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-A6EV       TCGA-D7-A6EX       TCGA-D7-A6EY       TCGA-D7-A6EZ 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-A6F0       TCGA-D7-A6F2       TCGA-D7-A747       TCGA-D7-A748 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-A74A       TCGA-D7-A74B       TCGA-EQ-5647       TCGA-EQ-8122 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7998       TCGA-FP-8099 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-FP-A4BE       TCGA-FP-A9TM       TCGA-HF-7131       TCGA-HF-7132 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-HF-7134       TCGA-HF-7136       TCGA-HU-8238       TCGA-HU-8243 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-HU-8602       TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-A4G3 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-HU-A4G8       TCGA-HU-A4GC       TCGA-HU-A4GD       TCGA-HU-A4GF 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-HU-A4GH       TCGA-HU-A4GJ       TCGA-HU-A4GN       TCGA-HU-A4GQ 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-HU-A4HB       TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-IN-A6RI       TCGA-IN-A6RJ       TCGA-IN-A6RL       TCGA-IN-A6RN 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-IN-A6RP       TCGA-IN-A7NR       TCGA-IN-A7NT       TCGA-IN-A7NU 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-IN-AB1V       TCGA-IN-AB1X       TCGA-IP-7968       TCGA-KB-A6F5 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-KB-A6F7       TCGA-KB-A93J       TCGA-MX-A5UG       TCGA-MX-A5UJ 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-MX-A663       TCGA-MX-A666       TCGA-R5-A7O7       TCGA-R5-A7ZE 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-R5-A7ZF       TCGA-R5-A7ZI       TCGA-R5-A7ZR       TCGA-R5-A804 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-R5-A805       TCGA-RD-A7BS       TCGA-RD-A7BW       TCGA-RD-A7C1 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-RD-A8MV       TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-RD-A8N5       TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-SW-A7EB       TCGA-VQ-A8DL       TCGA-VQ-A8DU       TCGA-VQ-A8DV 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-VQ-A8E2       TCGA-VQ-A8E7       TCGA-VQ-A8P3       TCGA-VQ-A8PE 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ       TCGA-VQ-A91Q 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D       TCGA-VQ-A94T 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-VQ-AA64       TCGA-VQ-AA68       TCGA-VQ-AA69       TCGA-VQ-AA6A 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-VQ-AA6B       TCGA-VQ-AA6F       TCGA-VQ-AA6G       TCGA-VQ-AA6I 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-VQ-AA6J       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LEFTY1 MUTATED        0      0      1      0      1
  LEFTY1 WILD-TYPE     88     66     44     55     46
D979V10, multiclass
[1] "Remove cluster labels:" "LEFTY1 MUTATED"        
clus
  LEFTY1 MUTATED LEFTY1 WILD-TYPE 
               2              299 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-6452       TCGA-BR-6453 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8060       TCGA-BR-8077       TCGA-BR-8078 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8485 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8590 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J5       TCGA-BR-A4J6 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-BR-A4QL       TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CD-8531       TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CD-8535       TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CD-A489       TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CD-A4MI       TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CG-5716       TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CG-5720       TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CG-5724       TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CG-5728       TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-CG-5734       TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-6518       TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-6522       TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-6527       TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-6818       TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-8572       TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-D7-A6ET 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-A6EV       TCGA-D7-A6EX       TCGA-D7-A6EY       TCGA-D7-A6EZ 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-A6F0       TCGA-D7-A6F2       TCGA-D7-A747       TCGA-D7-A748 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-D7-A74A       TCGA-D7-A74B       TCGA-EQ-5647       TCGA-EQ-8122 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-F1-6177       TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-FP-7735       TCGA-FP-7829       TCGA-FP-7998       TCGA-FP-8099 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-FP-A4BE       TCGA-FP-A9TM       TCGA-HF-7131       TCGA-HF-7132 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-HF-7134       TCGA-HF-7136       TCGA-HU-8238       TCGA-HU-8243 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-HU-8602       TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-A4G3 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-HU-A4G8       TCGA-HU-A4GC       TCGA-HU-A4GD       TCGA-HU-A4GF 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-HU-A4GH       TCGA-HU-A4GJ       TCGA-HU-A4GN       TCGA-HU-A4GQ 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-HU-A4H4       TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-HU-A4HB       TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-IN-A6RI       TCGA-IN-A6RJ       TCGA-IN-A6RL       TCGA-IN-A6RN 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-IN-A6RP       TCGA-IN-A7NR       TCGA-IN-A7NT       TCGA-IN-A7NU 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-IN-AB1V       TCGA-IN-AB1X       TCGA-IP-7968       TCGA-KB-A6F5 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-KB-A6F7       TCGA-KB-A93J       TCGA-MX-A5UG       TCGA-MX-A5UJ 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-MX-A663       TCGA-MX-A666       TCGA-R5-A7O7       TCGA-R5-A7ZE 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-R5-A7ZF       TCGA-R5-A7ZI       TCGA-R5-A7ZR       TCGA-R5-A804 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-R5-A805       TCGA-RD-A7BS       TCGA-RD-A7BW       TCGA-RD-A7C1 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-RD-A8MV       TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-RD-A8N5       TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-SW-A7EB       TCGA-VQ-A8DL       TCGA-VQ-A8DU       TCGA-VQ-A8DV 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-VQ-A8E2       TCGA-VQ-A8E7       TCGA-VQ-A8P3       TCGA-VQ-A8PE 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ       TCGA-VQ-A91Q 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D       TCGA-VQ-A94T 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-VQ-AA64       TCGA-VQ-AA68       TCGA-VQ-AA69       TCGA-VQ-AA6A 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-VQ-AA6B       TCGA-VQ-AA6F       TCGA-VQ-AA6G       TCGA-VQ-AA6I 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 
      TCGA-VQ-AA6J       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" "LEFTY1 WILD-TYPE" 

Clustering(980) Variable = PIWIL2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIWIL2 MUTATED        0      9      0      0
  PIWIL2 WILD-TYPE    204    128     47      3
D980V1, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              9              128
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIWIL2 MUTATED        0      6      0      0      2
  PIWIL2 WILD-TYPE     39     90     44     88     78
D980V2, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              6               90
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIWIL2 MUTATED        1      3      2      1      1
  PIWIL2 WILD-TYPE     25     76     71     81     57
D980V3, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              3               76
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIWIL2 MUTATED        2      3      2      1
  PIWIL2 WILD-TYPE    125     48     69     68
D980V4, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              3               48
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIWIL2 MUTATED        0      0      5      1      3
  PIWIL2 WILD-TYPE     84     85     80     68     44
D980V5, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              5               80
  CLUS_4              1               68
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIWIL2 MUTATED        1      2      1      5
  PIWIL2 WILD-TYPE     94     72    120     75
D980V6, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIWIL2 MUTATED        4      2      2      0      1      0
  PIWIL2 WILD-TYPE     48     62     70    104     39     59
D980V7, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              2               62
  CLUS_3              2               70
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIWIL2 MUTATED        8      1      0
  PIWIL2 WILD-TYPE    209     74     99
D980V8, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              8              209
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIWIL2 MUTATED        6      0      2
  PIWIL2 WILD-TYPE    115    108     70
D980V9, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIWIL2 MUTATED        2      0      1      0      5
  PIWIL2 WILD-TYPE     86     66     44     55     42
D980V10, multiclass
        clus
vv       PIWIL2 MUTATED PIWIL2 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(981) Variable = ZNF7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF7 MUTATED        0      6      2      0
  ZNF7 WILD-TYPE    204    131     45      3
D981V1, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            6            131
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF7 MUTATED        1      5      0      0      1
  ZNF7 WILD-TYPE     38     91     44     88     79
D981V2, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            5             91
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF7 MUTATED        1      1      3      0      1
  ZNF7 WILD-TYPE     25     78     70     82     57
D981V3, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             78
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF7 MUTATED        2      3      1      0
  ZNF7 WILD-TYPE    125     48     70     69
D981V4, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            3             48
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF7 MUTATED        0      0      5      2      2
  ZNF7 WILD-TYPE     84     85     80     67     45
D981V5, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            5             80
  CLUS_4            2             67
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF7 MUTATED        3      1      1      4
  ZNF7 WILD-TYPE     92     73    120     76
D981V6, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF7 MUTATED        4      3      1      0      1      0
  ZNF7 WILD-TYPE     48     61     71    104     39     59
D981V7, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            3             61
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZNF7 MUTATED        9      0      0
  ZNF7 WILD-TYPE    208     75     99
D981V8, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            9            208
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZNF7 MUTATED        4      0      2
  ZNF7 WILD-TYPE    117    108     70
D981V9, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF7 MUTATED        1      0      1      0      4
  ZNF7 WILD-TYPE     87     66     44     55     43
D981V10, multiclass
        clus
vv       ZNF7 MUTATED ZNF7 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(982) Variable = CHST4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHST4 MUTATED        1      5      1      0
  CHST4 WILD-TYPE    203    132     46      3
D982V1, multiclass
        clus
vv       CHST4 MUTATED CHST4 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             5             132
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHST4 MUTATED        0      7      0      0      0
  CHST4 WILD-TYPE     39     89     44     88     80
D982V2, multiclass
        clus
vv       CHST4 MUTATED CHST4 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              89
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHST4 MUTATED        0      1      2      0      2
  CHST4 WILD-TYPE     26     78     71     82     56
D982V3, multiclass
        clus
vv       CHST4 MUTATED CHST4 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHST4 MUTATED        0      4      1      0
  CHST4 WILD-TYPE    127     47     70     69
D982V4, multiclass
        clus
vv       CHST4 MUTATED CHST4 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHST4 MUTATED        0      1      3      2      1
  CHST4 WILD-TYPE     84     84     82     67     46
D982V5, multiclass
        clus
vv       CHST4 MUTATED CHST4 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             3              82
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CHST4 MUTATED        3      1      0      3
  CHST4 WILD-TYPE     92     73    121     77
D982V6, multiclass
        clus
vv       CHST4 MUTATED CHST4 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CHST4 MUTATED        4      0      2      1      0      0
  CHST4 WILD-TYPE     48     64     70    103     40     59
D982V7, multiclass
        clus
vv       CHST4 MUTATED CHST4 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             0              64
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHST4 MUTATED        6      1      0
  CHST4 WILD-TYPE    211     74     99
D982V8, multiclass
        clus
vv       CHST4 MUTATED CHST4 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CHST4 MUTATED        3      1      2
  CHST4 WILD-TYPE    118    107     70
D982V9, multiclass
        clus
vv       CHST4 MUTATED CHST4 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CHST4 MUTATED        0      1      0      0      5
  CHST4 WILD-TYPE     88     65     45     55     42
D982V10, multiclass
        clus
vv       CHST4 MUTATED CHST4 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(983) Variable = SCGB1A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCGB1A1 MUTATED        1      2      0      0
  SCGB1A1 WILD-TYPE    203    135     47      3
D983V1, multiclass
        clus
vv       SCGB1A1 MUTATED SCGB1A1 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               2               135
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCGB1A1 MUTATED        0      3      0      0      0
  SCGB1A1 WILD-TYPE     39     93     44     88     80
D983V2, multiclass
        clus
vv       SCGB1A1 MUTATED SCGB1A1 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCGB1A1 MUTATED        0      2      1      0      0
  SCGB1A1 WILD-TYPE     26     77     72     82     58
D983V3, multiclass
        clus
vv       SCGB1A1 MUTATED SCGB1A1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               1                72
  CLUS_4               0                82
  CLUS_5               0                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCGB1A1 MUTATED        0      3      0      0
  SCGB1A1 WILD-TYPE    127     48     71     69
D983V4, multiclass
        clus
vv       SCGB1A1 MUTATED SCGB1A1 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               3                48
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCGB1A1 MUTATED        0      0      2      0      1
  SCGB1A1 WILD-TYPE     84     85     83     69     46
D983V5, multiclass
        clus
vv       SCGB1A1 MUTATED SCGB1A1 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               2                83
  CLUS_4               0                69
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCGB1A1 MUTATED        0      0      0      3
  SCGB1A1 WILD-TYPE     95     74    121     77
D983V6, multiclass
        clus
vv       SCGB1A1 MUTATED SCGB1A1 WILD-TYPE
  CLUS_1               0                95
  CLUS_2               0                74
  CLUS_3               0               121
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCGB1A1 MUTATED        2      0      1      0      0      0
  SCGB1A1 WILD-TYPE     50     64     71    104     40     59
D983V7, multiclass
        clus
vv       SCGB1A1 MUTATED SCGB1A1 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               0                64
  CLUS_3               1                71
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SCGB1A1 MUTATED        3      0      0
  SCGB1A1 WILD-TYPE    214     75     99
D983V8, multiclass
        clus
vv       SCGB1A1 MUTATED SCGB1A1 WILD-TYPE
  CLUS_1               3               214
  CLUS_2               0                75
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SCGB1A1 MUTATED        3      0      0
  SCGB1A1 WILD-TYPE    118    108     72
D983V9, multiclass
        clus
vv       SCGB1A1 MUTATED SCGB1A1 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               0               108
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCGB1A1 MUTATED        0      0      0      0      3
  SCGB1A1 WILD-TYPE     88     66     45     55     44
D983V10, multiclass
        clus
vv       SCGB1A1 MUTATED SCGB1A1 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(984) Variable = ZIM3 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZIM3 MUTATED        3      8      0      0
  ZIM3 WILD-TYPE    201    129     47      3
D984V1, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            3            201
  CLUS_2            8            129
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZIM3 MUTATED        0      3      1      3      1
  ZIM3 WILD-TYPE     39     93     43     85     79
D984V2, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            1             43
  CLUS_4            3             85
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZIM3 MUTATED        1      3      1      4      0
  ZIM3 WILD-TYPE     25     76     72     78     58
D984V3, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            1             72
  CLUS_4            4             78
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZIM3 MUTATED        2      2      1      4
  ZIM3 WILD-TYPE    125     49     70     65
D984V4, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            2             49
  CLUS_3            1             70
  CLUS_4            4             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZIM3 MUTATED        2      3      3      1      1
  ZIM3 WILD-TYPE     82     82     82     68     46
D984V5, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            3             82
  CLUS_3            3             82
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZIM3 MUTATED        2      5      2      1
  ZIM3 WILD-TYPE     93     69    119     79
D984V6, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            5             69
  CLUS_3            2            119
  CLUS_4            1             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZIM3 MUTATED        1      4      0      3      1      2
  ZIM3 WILD-TYPE     51     60     72    101     39     57
D984V7, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            4             60
  CLUS_3            0             72
  CLUS_4            3            101
  CLUS_5            1             39
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZIM3 MUTATED        6      2      3
  ZIM3 WILD-TYPE    211     73     96
D984V8, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            6            211
  CLUS_2            2             73
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ZIM3 MUTATED        1      3      4
  ZIM3 WILD-TYPE    120    105     68
D984V9, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            1            120
  CLUS_2            3            105
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZIM3 MUTATED        2      1      2      2      1
  ZIM3 WILD-TYPE     86     65     43     53     46
D984V10, multiclass
        clus
vv       ZIM3 MUTATED ZIM3 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            1             65
  CLUS_3            2             43
  CLUS_4            2             53
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(985) Variable = ACTG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTG2 MUTATED        3      7      0      0
  ACTG2 WILD-TYPE    201    130     47      3
D985V1, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTG2 MUTATED        0      2      2      1      1
  ACTG2 WILD-TYPE     39     94     42     87     79
D985V2, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             2              94
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTG2 MUTATED        0      3      0      0      4
  ACTG2 WILD-TYPE     26     76     73     82     54
D985V3, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             0              73
  CLUS_4             0              82
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTG2 MUTATED        2      3      2      0
  ACTG2 WILD-TYPE    125     48     69     69
D985V4, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             3              48
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTG2 MUTATED        2      3      1      3      0
  ACTG2 WILD-TYPE     82     82     84     66     47
D985V5, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             3              82
  CLUS_3             1              84
  CLUS_4             3              66
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACTG2 MUTATED        4      0      2      3
  ACTG2 WILD-TYPE     91     74    119     77
D985V6, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             0              74
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACTG2 MUTATED        1      6      1      0      1      1
  ACTG2 WILD-TYPE     51     58     71    104     39     58
D985V7, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             6              58
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTG2 MUTATED        6      0      4
  ACTG2 WILD-TYPE    211     75     95
D985V8, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACTG2 MUTATED        2      1      3
  ACTG2 WILD-TYPE    119    107     69
D985V9, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACTG2 MUTATED        1      0      2      2      1
  ACTG2 WILD-TYPE     87     66     43     53     46
D985V10, multiclass
        clus
vv       ACTG2 MUTATED ACTG2 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             2              53
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(986) Variable = PIK3CB MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CB MUTATED        4      7      0      0
  PIK3CB WILD-TYPE    200    130     47      3
D986V1, multiclass
        clus
vv       PIK3CB MUTATED PIK3CB WILD-TYPE
  CLUS_1              4              200
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CB MUTATED        1      2      3      2      1
  PIK3CB WILD-TYPE     38     94     41     86     79
D986V2, multiclass
        clus
vv       PIK3CB MUTATED PIK3CB WILD-TYPE
  CLUS_1              1               38
  CLUS_2              2               94
  CLUS_3              3               41
  CLUS_4              2               86
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CB MUTATED        0      5      2      1      2
  PIK3CB WILD-TYPE     26     74     71     81     56
D986V3, multiclass
        clus
vv       PIK3CB MUTATED PIK3CB WILD-TYPE
  CLUS_1              0               26
  CLUS_2              5               74
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CB MUTATED        3      4      2      1
  PIK3CB WILD-TYPE    124     47     69     68
D986V4, multiclass
        clus
vv       PIK3CB MUTATED PIK3CB WILD-TYPE
  CLUS_1              3              124
  CLUS_2              4               47
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CB MUTATED        1      1      5      1      0
  PIK3CB WILD-TYPE     83     84     80     68     47
D986V5, multiclass
        clus
vv       PIK3CB MUTATED PIK3CB WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              5               80
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CB MUTATED        3      1      1      3
  PIK3CB WILD-TYPE     92     73    120     77
D986V6, multiclass
        clus
vv       PIK3CB MUTATED PIK3CB WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIK3CB MUTATED        2      4      1      2      0      2
  PIK3CB WILD-TYPE     50     60     71    102     40     57
D986V7, multiclass
        clus
vv       PIK3CB MUTATED PIK3CB WILD-TYPE
  CLUS_1              2               50
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CB MUTATED        7      2      2
  PIK3CB WILD-TYPE    210     73     97
D986V8, multiclass
        clus
vv       PIK3CB MUTATED PIK3CB WILD-TYPE
  CLUS_1              7              210
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CB MUTATED        3      2      2
  PIK3CB WILD-TYPE    118    106     70
D986V9, multiclass
        clus
vv       PIK3CB MUTATED PIK3CB WILD-TYPE
  CLUS_1              3              118
  CLUS_2              2              106
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIK3CB MUTATED        2      2      1      1      1
  PIK3CB WILD-TYPE     86     64     44     54     46
D986V10, multiclass
        clus
vv       PIK3CB MUTATED PIK3CB WILD-TYPE
  CLUS_1              2               86
  CLUS_2              2               64
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(987) Variable = LAT2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAT2 MUTATED        3      5      0      0
  LAT2 WILD-TYPE    201    132     47      3
D987V1, multiclass
        clus
vv       LAT2 MUTATED LAT2 WILD-TYPE
  CLUS_1            3            201
  CLUS_2            5            132
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LAT2 MUTATED        0      4      1      2      0
  LAT2 WILD-TYPE     39     92     43     86     80
D987V2, multiclass
        clus
vv       LAT2 MUTATED LAT2 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            1             43
  CLUS_4            2             86
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LAT2 MUTATED        1      3      3      1      0
  LAT2 WILD-TYPE     25     76     70     81     58
D987V3, multiclass
        clus
vv       LAT2 MUTATED LAT2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAT2 MUTATED        4      2      1      1
  LAT2 WILD-TYPE    123     49     70     68
D987V4, multiclass
        clus
vv       LAT2 MUTATED LAT2 WILD-TYPE
  CLUS_1            4            123
  CLUS_2            2             49
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LAT2 MUTATED        1      1      2      1      0
  LAT2 WILD-TYPE     83     84     83     68     47
D987V5, multiclass
        clus
vv       LAT2 MUTATED LAT2 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            1             84
  CLUS_3            2             83
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LAT2 MUTATED        2      2      0      1
  LAT2 WILD-TYPE     93     72    121     79
D987V6, multiclass
        clus
vv       LAT2 MUTATED LAT2 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            1             79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LAT2 MUTATED        1      2      0      2      2      1
  LAT2 WILD-TYPE     51     62     72    102     38     58
D987V7, multiclass
        clus
vv       LAT2 MUTATED LAT2 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            2             62
  CLUS_3            0             72
  CLUS_4            2            102
  CLUS_5            2             38
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LAT2 MUTATED        4      3      1
  LAT2 WILD-TYPE    213     72     98
D987V8, multiclass
        clus
vv       LAT2 MUTATED LAT2 WILD-TYPE
  CLUS_1            4            213
  CLUS_2            3             72
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  LAT2 MUTATED        2      1      3
  LAT2 WILD-TYPE    119    107     69
D987V9, multiclass
        clus
vv       LAT2 MUTATED LAT2 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            1            107
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LAT2 MUTATED        1      2      1      0      2
  LAT2 WILD-TYPE     87     64     44     55     45
D987V10, multiclass
        clus
vv       LAT2 MUTATED LAT2 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            2             64
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(988) Variable = ZBTB40 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB40 MUTATED        3      7      1      0
  ZBTB40 WILD-TYPE    201    130     46      3
D988V1, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              7              130
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB40 MUTATED        1      7      1      0      1
  ZBTB40 WILD-TYPE     38     89     43     88     79
D988V2, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              7               89
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB40 MUTATED        0      4      4      1      1
  ZBTB40 WILD-TYPE     26     75     69     81     57
D988V3, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB40 MUTATED        2      3      4      1
  ZBTB40 WILD-TYPE    125     48     67     68
D988V4, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              3               48
  CLUS_3              4               67
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB40 MUTATED        1      0      6      1      1
  ZBTB40 WILD-TYPE     83     85     79     68     46
D988V5, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               85
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZBTB40 MUTATED        3      1      3      2
  ZBTB40 WILD-TYPE     92     73    118     78
D988V6, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              3              118
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZBTB40 MUTATED        5      3      2      1      0      0
  ZBTB40 WILD-TYPE     47     61     70    103     40     59
D988V7, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              3               61
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB40 MUTATED       10      1      0
  ZBTB40 WILD-TYPE    207     74     99
D988V8, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1             10              207
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZBTB40 MUTATED        4      2      3
  ZBTB40 WILD-TYPE    117    106     69
D988V9, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              2              106
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZBTB40 MUTATED        5      0      2      0      2
  ZBTB40 WILD-TYPE     83     66     43     55     45
D988V10, multiclass
        clus
vv       ZBTB40 MUTATED ZBTB40 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(989) Variable = PIGO MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGO MUTATED        1      7      1      0
  PIGO WILD-TYPE    203    130     46      3
D989V1, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            1            203
  CLUS_2            7            130
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGO MUTATED        1      6      1      0      1
  PIGO WILD-TYPE     38     90     43     88     79
D989V2, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            1             38
  CLUS_2            6             90
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGO MUTATED        0      3      2      0      3
  PIGO WILD-TYPE     26     76     71     82     55
D989V3, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGO MUTATED        3      4      1      0
  PIGO WILD-TYPE    124     47     70     69
D989V4, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            3            124
  CLUS_2            4             47
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGO MUTATED        0      1      6      2      0
  PIGO WILD-TYPE     84     84     79     67     47
D989V5, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            6             79
  CLUS_4            2             67
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIGO MUTATED        4      2      0      3
  PIGO WILD-TYPE     91     72    121     77
D989V6, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            4             91
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIGO MUTATED        4      1      1      3      0      0
  PIGO WILD-TYPE     48     63     71    101     40     59
D989V7, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            4             48
  CLUS_2            1             63
  CLUS_3            1             71
  CLUS_4            3            101
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGO MUTATED        7      1      1
  PIGO WILD-TYPE    210     74     98
D989V8, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            7            210
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PIGO MUTATED        4      2      1
  PIGO WILD-TYPE    117    106     71
D989V9, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            4            117
  CLUS_2            2            106
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIGO MUTATED        2      1      1      1      2
  PIGO WILD-TYPE     86     65     44     54     45
D989V10, multiclass
        clus
vv       PIGO MUTATED PIGO WILD-TYPE
  CLUS_1            2             86
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(990) Variable = NAA16 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA16 MUTATED        2      7      0      0
  NAA16 WILD-TYPE    202    130     47      3
D990V1, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA16 MUTATED        1      3      1      0      1
  NAA16 WILD-TYPE     38     93     43     88     79
D990V2, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA16 MUTATED        0      3      3      0      3
  NAA16 WILD-TYPE     26     76     70     82     55
D990V3, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA16 MUTATED        3      5      1      0
  NAA16 WILD-TYPE    124     46     70     69
D990V4, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             5              46
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA16 MUTATED        0      0      7      1      1
  NAA16 WILD-TYPE     84     85     78     68     46
D990V5, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             7              78
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA16 MUTATED        3      1      2      3
  NAA16 WILD-TYPE     92     73    119     77
D990V6, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAA16 MUTATED        3      5      0      0      0      1
  NAA16 WILD-TYPE     49     59     72    104     40     58
D990V7, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             5              59
  CLUS_3             0              72
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA16 MUTATED        6      1      2
  NAA16 WILD-TYPE    211     74     97
D990V8, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA16 MUTATED        3      0      4
  NAA16 WILD-TYPE    118    108     68
D990V9, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA16 MUTATED        1      0      3      1      2
  NAA16 WILD-TYPE     87     66     42     54     45
D990V10, multiclass
        clus
vv       NAA16 MUTATED NAA16 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(991) Variable = NRN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRN1 MUTATED        1      2      0      0
  NRN1 WILD-TYPE    203    135     47      3
D991V1, multiclass
        clus
vv       NRN1 MUTATED NRN1 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            2            135
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRN1 MUTATED        0      3      0      0      0
  NRN1 WILD-TYPE     39     93     44     88     80
D991V2, multiclass
        clus
vv       NRN1 MUTATED NRN1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRN1 MUTATED        0      1      2      0      0
  NRN1 WILD-TYPE     26     78     71     82     58
D991V3, multiclass
        clus
vv       NRN1 MUTATED NRN1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRN1 MUTATED        0      3      0      0
  NRN1 WILD-TYPE    127     48     71     69
D991V4, multiclass
        clus
vv       NRN1 MUTATED NRN1 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            3             48
  CLUS_3            0             71
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRN1 MUTATED        0      0      2      0      1
  NRN1 WILD-TYPE     84     85     83     69     46
D991V5, multiclass
        clus
vv       NRN1 MUTATED NRN1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            2             83
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRN1 MUTATED        1      0      0      2
  NRN1 WILD-TYPE     94     74    121     78
D991V6, multiclass
        clus
vv       NRN1 MUTATED NRN1 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            0             74
  CLUS_3            0            121
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NRN1 MUTATED        3      0      0      0      0      0
  NRN1 WILD-TYPE     49     64     72    104     40     59
D991V7, multiclass
        clus
vv       NRN1 MUTATED NRN1 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            0             64
  CLUS_3            0             72
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRN1 MUTATED        3      0      0
  NRN1 WILD-TYPE    214     75     99
D991V8, multiclass
        clus
vv       NRN1 MUTATED NRN1 WILD-TYPE
  CLUS_1            3            214
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRN1 MUTATED        1      1      1
  NRN1 WILD-TYPE    120    107     71
D991V9, multiclass
        clus
vv       NRN1 MUTATED NRN1 WILD-TYPE
  CLUS_1            1            120
  CLUS_2            1            107
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRN1 MUTATED        1      0      0      0      2
  NRN1 WILD-TYPE     87     66     45     55     45
D991V10, multiclass
        clus
vv       NRN1 MUTATED NRN1 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(992) Variable = EPN1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPN1 MUTATED        0      8      0      0
  EPN1 WILD-TYPE    204    129     47      3
D992V1, multiclass
        clus
vv       EPN1 MUTATED EPN1 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            8            129
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPN1 MUTATED        0      6      1      0      0
  EPN1 WILD-TYPE     39     90     43     88     80
D992V2, multiclass
        clus
vv       EPN1 MUTATED EPN1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            6             90
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPN1 MUTATED        1      3      2      0      0
  EPN1 WILD-TYPE     25     76     71     82     58
D992V3, multiclass
        clus
vv       EPN1 MUTATED EPN1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPN1 MUTATED        1      2      3      0
  EPN1 WILD-TYPE    126     49     68     69
D992V4, multiclass
        clus
vv       EPN1 MUTATED EPN1 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            2             49
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPN1 MUTATED        1      0      4      1      1
  EPN1 WILD-TYPE     83     85     81     68     46
D992V5, multiclass
        clus
vv       EPN1 MUTATED EPN1 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            0             85
  CLUS_3            4             81
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPN1 MUTATED        3      0      0      4
  EPN1 WILD-TYPE     92     74    121     76
D992V6, multiclass
        clus
vv       EPN1 MUTATED EPN1 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            0             74
  CLUS_3            0            121
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPN1 MUTATED        3      3      1      0      0      1
  EPN1 WILD-TYPE     49     61     71    104     40     58
D992V7, multiclass
        clus
vv       EPN1 MUTATED EPN1 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            3             61
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPN1 MUTATED        7      0      1
  EPN1 WILD-TYPE    210     75     98
D992V8, multiclass
        clus
vv       EPN1 MUTATED EPN1 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EPN1 MUTATED        3      1      3
  EPN1 WILD-TYPE    118    107     69
D992V9, multiclass
        clus
vv       EPN1 MUTATED EPN1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            1            107
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPN1 MUTATED        2      0      3      0      2
  EPN1 WILD-TYPE     86     66     42     55     45
D992V10, multiclass
        clus
vv       EPN1 MUTATED EPN1 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            3             42
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(993) Variable = PPARG MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARG MUTATED        0      3      1      0
  PPARG WILD-TYPE    204    134     46      3
D993V1, multiclass
        clus
vv       PPARG MUTATED PPARG WILD-TYPE
  CLUS_1             0             204
  CLUS_2             3             134
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARG MUTATED        0      1      1      0      0
  PPARG WILD-TYPE     39     95     43     88     80
D993V2, multiclass
[1] "Remove cluster labels:" "PPARG MUTATED"         
clus
  PPARG MUTATED PPARG WILD-TYPE 
              2             345 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7716 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8081      TCGA-BR-8284 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8366 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8487 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4J4      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-A4MJ      TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-5716 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2      TCGA-D7-A747 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B      TCGA-EQ-5647 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7735 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-A4BE      TCGA-FP-A4BF      TCGA-FP-A8CX      TCGA-FP-A9TM 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HF-7136      TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8238 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8244      TCGA-HU-8249      TCGA-HU-8602 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4G2 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G6      TCGA-HU-A4G8      TCGA-HU-A4G9 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GJ      TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4H0      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4HB      TCGA-HU-A4HD 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-A6RO      TCGA-IN-A6RP      TCGA-IN-A6RR      TCGA-IN-A6RS 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-KB-A93G      TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-MX-A663      TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-R5-A7ZF      TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-R5-A805      TCGA-RD-A7BS      TCGA-RD-A7BT      TCGA-RD-A7BW 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-RD-A7C1      TCGA-RD-A8MV      TCGA-RD-A8MW      TCGA-RD-A8N0 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-RD-A8N1      TCGA-RD-A8N2      TCGA-RD-A8N4      TCGA-RD-A8N5 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU      TCGA-VQ-A8DV 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-A8DZ      TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-A8P3      TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-A8PQ      TCGA-VQ-A91Q      TCGA-VQ-A91U      TCGA-VQ-A91V 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-A92D      TCGA-VQ-A94T      TCGA-VQ-AA64      TCGA-VQ-AA68 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6J      TCGA-VQ-AA6K 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-ZA-A8F6 
"PPARG WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARG MUTATED        0      1      0      0      2
  PPARG WILD-TYPE     26     78     73     82     56
D993V3, multiclass
        clus
vv       PPARG MUTATED PPARG WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             0              73
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARG MUTATED        1      1      1      0
  PPARG WILD-TYPE    126     50     70     69
D993V4, multiclass
        clus
vv       PPARG MUTATED PPARG WILD-TYPE
  CLUS_1             1             126
  CLUS_2             1              50
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARG MUTATED        0      0      1      2      1
  PPARG WILD-TYPE     84     85     84     67     46
D993V5, multiclass
        clus
vv       PPARG MUTATED PPARG WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             1              84
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPARG MUTATED        3      0      0      1
  PPARG WILD-TYPE     92     74    121     79
D993V6, multiclass
        clus
vv       PPARG MUTATED PPARG WILD-TYPE
  CLUS_1             3              92
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPARG MUTATED        1      3      0      0      0      0
  PPARG WILD-TYPE     51     61     72    104     40     59
D993V7, multiclass
        clus
vv       PPARG MUTATED PPARG WILD-TYPE
  CLUS_1             1              51
  CLUS_2             3              61
  CLUS_3             0              72
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPARG MUTATED        4      0      0
  PPARG WILD-TYPE    213     75     99
D993V8, multiclass
        clus
vv       PPARG MUTATED PPARG WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPARG MUTATED        1      0      1
  PPARG WILD-TYPE    120    108     71
D993V9, multiclass
[1] "Remove cluster labels:" "PPARG MUTATED"         
clus
  PPARG MUTATED PPARG WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-A9TM      TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GJ      TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4HB      TCGA-IN-7806 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPARG MUTATED        0      0      1      0      1
  PPARG WILD-TYPE     88     66     44     55     46
D993V10, multiclass
[1] "Remove cluster labels:" "PPARG MUTATED"         
clus
  PPARG MUTATED PPARG WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715      TCGA-BR-7717 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-FP-A9TM      TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GJ      TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4HB      TCGA-IN-7806 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"PPARG WILD-TYPE" "PPARG WILD-TYPE" "PPARG WILD-TYPE" 

Clustering(994) Variable = C1ORF141 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF141 MUTATED        3      6      3      0
  C1ORF141 WILD-TYPE    201    131     44      3
D994V1, multiclass
        clus
vv       C1ORF141 MUTATED C1ORF141 WILD-TYPE
  CLUS_1                3                201
  CLUS_2                6                131
  CLUS_3                3                 44
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF141 MUTATED        1      5      2      1      2
  C1ORF141 WILD-TYPE     38     91     42     87     78
D994V2, multiclass
        clus
vv       C1ORF141 MUTATED C1ORF141 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                5                 91
  CLUS_3                2                 42
  CLUS_4                1                 87
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF141 MUTATED        0      4      5      0      3
  C1ORF141 WILD-TYPE     26     75     68     82     55
D994V3, multiclass
        clus
vv       C1ORF141 MUTATED C1ORF141 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                4                 75
  CLUS_3                5                 68
  CLUS_4                0                 82
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF141 MUTATED        4      5      3      0
  C1ORF141 WILD-TYPE    123     46     68     69
D994V4, multiclass
        clus
vv       C1ORF141 MUTATED C1ORF141 WILD-TYPE
  CLUS_1                4                123
  CLUS_2                5                 46
  CLUS_3                3                 68
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF141 MUTATED        1      2      5      1      2
  C1ORF141 WILD-TYPE     83     83     80     68     45
D994V5, multiclass
        clus
vv       C1ORF141 MUTATED C1ORF141 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 83
  CLUS_3                5                 80
  CLUS_4                1                 68
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF141 MUTATED        1      1      1      8
  C1ORF141 WILD-TYPE     94     73    120     72
D994V6, multiclass
        clus
vv       C1ORF141 MUTATED C1ORF141 WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                8                 72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1ORF141 MUTATED        4      1      3      3      0      1
  C1ORF141 WILD-TYPE     48     63     69    101     40     58
D994V7, multiclass
        clus
vv       C1ORF141 MUTATED C1ORF141 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                1                 63
  CLUS_3                3                 69
  CLUS_4                3                101
  CLUS_5                0                 40
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C1ORF141 MUTATED       10      1      1
  C1ORF141 WILD-TYPE    207     74     98
D994V8, multiclass
        clus
vv       C1ORF141 MUTATED C1ORF141 WILD-TYPE
  CLUS_1               10                207
  CLUS_2                1                 74
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C1ORF141 MUTATED        6      2      2
  C1ORF141 WILD-TYPE    115    106     70
D994V9, multiclass
        clus
vv       C1ORF141 MUTATED C1ORF141 WILD-TYPE
  CLUS_1                6                115
  CLUS_2                2                106
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF141 MUTATED        5      2      0      0      3
  C1ORF141 WILD-TYPE     83     64     45     55     44
D994V10, multiclass
        clus
vv       C1ORF141 MUTATED C1ORF141 WILD-TYPE
  CLUS_1                5                 83
  CLUS_2                2                 64
  CLUS_3                0                 45
  CLUS_4                0                 55
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(995) Variable = EXOSC10 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOSC10 MUTATED        2      8      1      0
  EXOSC10 WILD-TYPE    202    129     46      3
D995V1, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               8               129
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC10 MUTATED        1      6      1      1      1
  EXOSC10 WILD-TYPE     38     90     43     87     79
D995V2, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               6                90
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC10 MUTATED        1      2      2      3      1
  EXOSC10 WILD-TYPE     25     77     71     79     57
D995V3, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               2                77
  CLUS_3               2                71
  CLUS_4               3                79
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOSC10 MUTATED        3      2      2      2
  EXOSC10 WILD-TYPE    124     49     69     67
D995V4, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               2                49
  CLUS_3               2                69
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC10 MUTATED        0      2      9      1      0
  EXOSC10 WILD-TYPE     84     83     76     68     47
D995V5, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3               9                76
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EXOSC10 MUTATED        1      4      1      6
  EXOSC10 WILD-TYPE     94     70    120     74
D995V6, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               4                70
  CLUS_3               1               120
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EXOSC10 MUTATED        4      4      0      2      1      1
  EXOSC10 WILD-TYPE     48     60     72    102     39     58
D995V7, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               4                60
  CLUS_3               0                72
  CLUS_4               2               102
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EXOSC10 MUTATED       10      1      1
  EXOSC10 WILD-TYPE    207     74     98
D995V8, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1              10               207
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EXOSC10 MUTATED        4      2      3
  EXOSC10 WILD-TYPE    117    106     69
D995V9, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               2               106
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EXOSC10 MUTATED        3      0      1      2      3
  EXOSC10 WILD-TYPE     85     66     44     53     44
D995V10, multiclass
        clus
vv       EXOSC10 MUTATED EXOSC10 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               2                53
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(996) Variable = ARID3A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID3A MUTATED        1      5      0      0
  ARID3A WILD-TYPE    203    132     47      3
D996V1, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              1              203
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID3A MUTATED        0      5      0      0      1
  ARID3A WILD-TYPE     39     91     44     88     79
D996V2, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID3A MUTATED        1      1      1      1      0
  ARID3A WILD-TYPE     25     78     72     81     58
D996V3, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID3A MUTATED        1      2      0      1
  ARID3A WILD-TYPE    126     49     71     68
D996V4, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID3A MUTATED        0      0      4      1      1
  ARID3A WILD-TYPE     84     85     81     68     46
D996V5, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID3A MUTATED        2      0      2      2
  ARID3A WILD-TYPE     93     74    119     78
D996V6, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0               74
  CLUS_3              2              119
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID3A MUTATED        2      2      1      1      0      0
  ARID3A WILD-TYPE     50     62     71    103     40     59
D996V7, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              2               50
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID3A MUTATED        6      0      0
  ARID3A WILD-TYPE    211     75     99
D996V8, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              6              211
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID3A MUTATED        1      1      3
  ARID3A WILD-TYPE    120    107     69
D996V9, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              1              120
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID3A MUTATED        1      0      2      0      2
  ARID3A WILD-TYPE     87     66     43     55     45
D996V10, multiclass
        clus
vv       ARID3A MUTATED ARID3A WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(997) Variable = RAB14 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB14 MUTATED        2      4      0      0
  RAB14 WILD-TYPE    202    133     47      3
D997V1, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             4             133
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB14 MUTATED        0      3      0      1      0
  RAB14 WILD-TYPE     39     93     44     87     80
D997V2, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB14 MUTATED        0      3      1      0      2
  RAB14 WILD-TYPE     26     76     72     82     56
D997V3, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB14 MUTATED        1      5      0      0
  RAB14 WILD-TYPE    126     46     71     69
D997V4, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             5              46
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB14 MUTATED        1      1      2      0      1
  RAB14 WILD-TYPE     83     84     83     69     46
D997V5, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             2              83
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAB14 MUTATED        0      1      1      3
  RAB14 WILD-TYPE     95     73    120     77
D997V6, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAB14 MUTATED        2      2      1      1      0      0
  RAB14 WILD-TYPE     50     62     71    103     40     59
D997V7, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB14 MUTATED        4      1      1
  RAB14 WILD-TYPE    213     74     98
D997V8, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RAB14 MUTATED        3      1      0
  RAB14 WILD-TYPE    118    107     72
D997V9, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAB14 MUTATED        0      1      0      1      2
  RAB14 WILD-TYPE     88     65     45     54     45
D997V10, multiclass
        clus
vv       RAB14 MUTATED RAB14 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(998) Variable = IGSF9B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF9B MUTATED        3     15      2      0
  IGSF9B WILD-TYPE    201    122     45      3
D998V1, multiclass
        clus
vv       IGSF9B MUTATED IGSF9B WILD-TYPE
  CLUS_1              3              201
  CLUS_2             15              122
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGSF9B MUTATED        0     10      1      2      3
  IGSF9B WILD-TYPE     39     86     43     86     77
D998V2, multiclass
        clus
vv       IGSF9B MUTATED IGSF9B WILD-TYPE
  CLUS_1              0               39
  CLUS_2             10               86
  CLUS_3              1               43
  CLUS_4              2               86
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGSF9B MUTATED        2      5      5      1      3
  IGSF9B WILD-TYPE     24     74     68     81     55
D998V3, multiclass
        clus
vv       IGSF9B MUTATED IGSF9B WILD-TYPE
  CLUS_1              2               24
  CLUS_2              5               74
  CLUS_3              5               68
  CLUS_4              1               81
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF9B MUTATED        3      8      4      1
  IGSF9B WILD-TYPE    124     43     67     68
D998V4, multiclass
        clus
vv       IGSF9B MUTATED IGSF9B WILD-TYPE
  CLUS_1              3              124
  CLUS_2              8               43
  CLUS_3              4               67
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGSF9B MUTATED        2      6      9      1      2
  IGSF9B WILD-TYPE     82     79     76     68     45
D998V5, multiclass
        clus
vv       IGSF9B MUTATED IGSF9B WILD-TYPE
  CLUS_1              2               82
  CLUS_2              6               79
  CLUS_3              9               76
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF9B MUTATED        4      3      3     10
  IGSF9B WILD-TYPE     91     71    118     70
D998V6, multiclass
        clus
vv       IGSF9B MUTATED IGSF9B WILD-TYPE
  CLUS_1              4               91
  CLUS_2              3               71
  CLUS_3              3              118
  CLUS_4             10               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IGSF9B MUTATED        4      6      5      2      1      2
  IGSF9B WILD-TYPE     48     58     67    102     39     57
D998V7, multiclass
        clus
vv       IGSF9B MUTATED IGSF9B WILD-TYPE
  CLUS_1              4               48
  CLUS_2              6               58
  CLUS_3              5               67
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGSF9B MUTATED       15      1      4
  IGSF9B WILD-TYPE    202     74     95
D998V8, multiclass
        clus
vv       IGSF9B MUTATED IGSF9B WILD-TYPE
  CLUS_1             15              202
  CLUS_2              1               74
  CLUS_3              4               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IGSF9B MUTATED        9      2      4
  IGSF9B WILD-TYPE    112    106     68
D998V9, multiclass
        clus
vv       IGSF9B MUTATED IGSF9B WILD-TYPE
  CLUS_1              9              112
  CLUS_2              2              106
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGSF9B MUTATED        6      0      3      0      6
  IGSF9B WILD-TYPE     82     66     42     55     41
D998V10, multiclass
        clus
vv       IGSF9B MUTATED IGSF9B WILD-TYPE
  CLUS_1              6               82
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              6               41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(999) Variable = ARNT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARNT MUTATED        1      6      1      0
  ARNT WILD-TYPE    203    131     46      3
D999V1, multiclass
        clus
vv       ARNT MUTATED ARNT WILD-TYPE
  CLUS_1            1            203
  CLUS_2            6            131
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARNT MUTATED        1      4      0      1      1
  ARNT WILD-TYPE     38     92     44     87     79
D999V2, multiclass
        clus
vv       ARNT MUTATED ARNT WILD-TYPE
  CLUS_1            1             38
  CLUS_2            4             92
  CLUS_3            0             44
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARNT MUTATED        0      2      3      0      2
  ARNT WILD-TYPE     26     77     70     82     56
D999V3, multiclass
        clus
vv       ARNT MUTATED ARNT WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARNT MUTATED        0      5      1      1
  ARNT WILD-TYPE    127     46     70     68
D999V4, multiclass
        clus
vv       ARNT MUTATED ARNT WILD-TYPE
  CLUS_1            0            127
  CLUS_2            5             46
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARNT MUTATED        0      1      6      1      0
  ARNT WILD-TYPE     84     84     79     68     47
D999V5, multiclass
        clus
vv       ARNT MUTATED ARNT WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            6             79
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARNT MUTATED        1      2      0      5
  ARNT WILD-TYPE     94     72    121     75
D999V6, multiclass
        clus
vv       ARNT MUTATED ARNT WILD-TYPE
  CLUS_1            1             94
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARNT MUTATED        2      1      2      1      1      1
  ARNT WILD-TYPE     50     63     70    103     39     58
D999V7, multiclass
        clus
vv       ARNT MUTATED ARNT WILD-TYPE
  CLUS_1            2             50
  CLUS_2            1             63
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ARNT MUTATED        6      0      2
  ARNT WILD-TYPE    211     75     97
D999V8, multiclass
        clus
vv       ARNT MUTATED ARNT WILD-TYPE
  CLUS_1            6            211
  CLUS_2            0             75
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ARNT MUTATED        5      1      1
  ARNT WILD-TYPE    116    107     71
D999V9, multiclass
        clus
vv       ARNT MUTATED ARNT WILD-TYPE
  CLUS_1            5            116
  CLUS_2            1            107
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARNT MUTATED        3      0      0      1      3
  ARNT WILD-TYPE     85     66     45     54     44
D999V10, multiclass
        clus
vv       ARNT MUTATED ARNT WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1000) Variable = CSNK2A2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK2A2 MUTATED        2      6      0      0
  CSNK2A2 WILD-TYPE    202    131     47      3
D1000V1, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               6               131
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK2A2 MUTATED        1      4      1      2      0
  CSNK2A2 WILD-TYPE     38     92     43     86     80
D1000V2, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               4                92
  CLUS_3               1                43
  CLUS_4               2                86
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK2A2 MUTATED        0      3      2      0      1
  CSNK2A2 WILD-TYPE     26     76     71     82     57
D1000V3, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               3                76
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK2A2 MUTATED        0      5      1      0
  CSNK2A2 WILD-TYPE    127     46     70     69
D1000V4, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               5                46
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK2A2 MUTATED        1      0      6      1      0
  CSNK2A2 WILD-TYPE     83     85     79     68     47
D1000V5, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                85
  CLUS_3               6                79
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK2A2 MUTATED        2      0      2      4
  CSNK2A2 WILD-TYPE     93     74    119     76
D1000V6, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               0                74
  CLUS_3               2               119
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSNK2A2 MUTATED        3      0      2      1      1      1
  CSNK2A2 WILD-TYPE     49     64     70    103     39     58
D1000V7, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               0                64
  CLUS_3               2                70
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK2A2 MUTATED        6      0      2
  CSNK2A2 WILD-TYPE    211     75     97
D1000V8, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               0                75
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK2A2 MUTATED        7      0      0
  CSNK2A2 WILD-TYPE    114    108     72
D1000V9, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               7               114
  CLUS_2               0               108
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK2A2 MUTATED        3      0      0      1      3
  CSNK2A2 WILD-TYPE     85     66     45     54     44
D1000V10, multiclass
        clus
vv       CSNK2A2 MUTATED CSNK2A2 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               1                54
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1001) Variable = HOXA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXA1 MUTATED        1      8      1      0
  HOXA1 WILD-TYPE    203    129     46      3
D1001V1, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXA1 MUTATED        1      3      1      0      3
  HOXA1 WILD-TYPE     38     93     43     88     77
D1001V2, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             3              77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXA1 MUTATED        1      4      2      1      2
  HOXA1 WILD-TYPE     25     75     71     81     56
D1001V3, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXA1 MUTATED        2      4      3      1
  HOXA1 WILD-TYPE    125     47     68     68
D1001V4, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXA1 MUTATED        0      1      6      1      1
  HOXA1 WILD-TYPE     84     84     79     68     46
D1001V5, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HOXA1 MUTATED        1      1      2      5
  HOXA1 WILD-TYPE     94     73    119     75
D1001V6, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HOXA1 MUTATED        2      6      1      1      0      0
  HOXA1 WILD-TYPE     50     58     71    103     40     59
D1001V7, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             6              58
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOXA1 MUTATED        6      2      2
  HOXA1 WILD-TYPE    211     73     97
D1001V8, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  HOXA1 MUTATED        0      1      5
  HOXA1 WILD-TYPE    121    107     67
D1001V9, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             0             121
  CLUS_2             1             107
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HOXA1 MUTATED        0      1      3      0      2
  HOXA1 WILD-TYPE     88     65     42     55     45
D1001V10, multiclass
        clus
vv       HOXA1 MUTATED HOXA1 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1002) Variable = SYNJ1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNJ1 MUTATED        2      8      1      0
  SYNJ1 WILD-TYPE    202    129     46      3
D1002V1, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNJ1 MUTATED        1      5      1      2      0
  SYNJ1 WILD-TYPE     38     91     43     86     80
D1002V2, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             2              86
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNJ1 MUTATED        0      6      1      1      2
  SYNJ1 WILD-TYPE     26     73     72     81     56
D1002V3, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             6              73
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNJ1 MUTATED        0      6      3      1
  SYNJ1 WILD-TYPE    127     45     68     68
D1002V4, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             6              45
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNJ1 MUTATED        3      2      3      0      2
  SYNJ1 WILD-TYPE     81     83     82     69     45
D1002V5, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             2              83
  CLUS_3             3              82
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYNJ1 MUTATED        1      1      2      6
  SYNJ1 WILD-TYPE     94     73    119     74
D1002V6, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYNJ1 MUTATED        4      3      2      1      0      1
  SYNJ1 WILD-TYPE     48     61     70    103     40     58
D1002V7, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             3              61
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNJ1 MUTATED        8      0      3
  SYNJ1 WILD-TYPE    209     75     96
D1002V8, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             0              75
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SYNJ1 MUTATED        5      1      2
  SYNJ1 WILD-TYPE    116    107     70
D1002V9, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYNJ1 MUTATED        3      0      1      0      4
  SYNJ1 WILD-TYPE     85     66     44     55     43
D1002V10, multiclass
        clus
vv       SYNJ1 MUTATED SYNJ1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1003) Variable = ABCC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC2 MUTATED        5      7      2      0
  ABCC2 WILD-TYPE    199    130     45      3
D1003V1, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             5             199
  CLUS_2             7             130
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC2 MUTATED        1      7      3      0      2
  ABCC2 WILD-TYPE     38     89     41     88     78
D1003V2, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             7              89
  CLUS_3             3              41
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC2 MUTATED        2      3      1      3      3
  ABCC2 WILD-TYPE     24     76     72     79     55
D1003V3, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             3              76
  CLUS_3             1              72
  CLUS_4             3              79
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC2 MUTATED        5      5      1      1
  ABCC2 WILD-TYPE    122     46     70     68
D1003V4, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             5              46
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC2 MUTATED        1      2      9      2      1
  ABCC2 WILD-TYPE     83     83     76     67     46
D1003V5, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             9              76
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC2 MUTATED        2      3      5      5
  ABCC2 WILD-TYPE     93     71    116     75
D1003V6, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             3              71
  CLUS_3             5             116
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCC2 MUTATED        2      7      6      0      1      0
  ABCC2 WILD-TYPE     50     57     66    104     39     59
D1003V7, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             7              57
  CLUS_3             6              66
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC2 MUTATED       14      1      1
  ABCC2 WILD-TYPE    203     74     98
D1003V8, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC2 MUTATED        6      1      5
  ABCC2 WILD-TYPE    115    107     67
D1003V9, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC2 MUTATED        3      1      3      1      4
  ABCC2 WILD-TYPE     85     65     42     54     43
D1003V10, multiclass
        clus
vv       ABCC2 MUTATED ABCC2 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1004) Variable = HEPACAM2 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPACAM2 MUTATED        0      6      2      0
  HEPACAM2 WILD-TYPE    204    131     45      3
D1004V1, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                0                204
  CLUS_2                6                131
  CLUS_3                2                 45
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HEPACAM2 MUTATED        0      2      1      1      1
  HEPACAM2 WILD-TYPE     39     94     43     87     79
D1004V2, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                2                 94
  CLUS_3                1                 43
  CLUS_4                1                 87
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HEPACAM2 MUTATED        0      3      2      1      2
  HEPACAM2 WILD-TYPE     26     76     71     81     56
D1004V3, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                3                 76
  CLUS_3                2                 71
  CLUS_4                1                 81
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPACAM2 MUTATED        2      3      2      1
  HEPACAM2 WILD-TYPE    125     48     69     68
D1004V4, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                3                 48
  CLUS_3                2                 69
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HEPACAM2 MUTATED        0      2      3      0      2
  HEPACAM2 WILD-TYPE     84     83     82     69     45
D1004V5, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                2                 83
  CLUS_3                3                 82
  CLUS_4                0                 69
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HEPACAM2 MUTATED        0      2      0      5
  HEPACAM2 WILD-TYPE     95     72    121     75
D1004V6, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                0                 95
  CLUS_2                2                 72
  CLUS_3                0                121
  CLUS_4                5                 75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HEPACAM2 MUTATED        1      3      1      3      0      0
  HEPACAM2 WILD-TYPE     51     61     71    101     40     59
D1004V7, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                3                 61
  CLUS_3                1                 71
  CLUS_4                3                101
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HEPACAM2 MUTATED        7      1      0
  HEPACAM2 WILD-TYPE    210     74     99
D1004V8, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                7                210
  CLUS_2                1                 74
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HEPACAM2 MUTATED        1      2      2
  HEPACAM2 WILD-TYPE    120    106     70
D1004V9, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                1                120
  CLUS_2                2                106
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HEPACAM2 MUTATED        1      1      1      0      2
  HEPACAM2 WILD-TYPE     87     65     44     55     45
D1004V10, multiclass
        clus
vv       HEPACAM2 MUTATED HEPACAM2 WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                1                 65
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1005) Variable = MAP4K4 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K4 MUTATED        3      8      2      0
  MAP4K4 WILD-TYPE    201    129     45      3
D1005V1, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              8              129
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP4K4 MUTATED        2      4      3      1      1
  MAP4K4 WILD-TYPE     37     92     41     87     79
D1005V2, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              4               92
  CLUS_3              3               41
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP4K4 MUTATED        1      4      4      1      3
  MAP4K4 WILD-TYPE     25     75     69     81     55
D1005V3, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              4               75
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K4 MUTATED        3      6      3      1
  MAP4K4 WILD-TYPE    124     45     68     68
D1005V4, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              6               45
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP4K4 MUTATED        1      2      6      1      1
  MAP4K4 WILD-TYPE     83     83     79     68     46
D1005V5, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K4 MUTATED        3      1      3      4
  MAP4K4 WILD-TYPE     92     73    118     76
D1005V6, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              3              118
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP4K4 MUTATED        3      5      0      3      2      0
  MAP4K4 WILD-TYPE     49     59     72    101     38     59
D1005V7, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              5               59
  CLUS_3              0               72
  CLUS_4              3              101
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP4K4 MUTATED       11      2      0
  MAP4K4 WILD-TYPE    206     73     99
D1005V8, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1             11              206
  CLUS_2              2               73
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP4K4 MUTATED        4      3      4
  MAP4K4 WILD-TYPE    117    105     68
D1005V9, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              3              105
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP4K4 MUTATED        5      2      3      0      1
  MAP4K4 WILD-TYPE     83     64     42     55     46
D1005V10, multiclass
        clus
vv       MAP4K4 MUTATED MAP4K4 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              2               64
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1006) Variable = B4GALT6 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALT6 MUTATED        2      3      1      0
  B4GALT6 WILD-TYPE    202    134     46      3
D1006V1, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               3               134
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B4GALT6 MUTATED        0      4      0      1      0
  B4GALT6 WILD-TYPE     39     92     44     87     80
D1006V2, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               4                92
  CLUS_3               0                44
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B4GALT6 MUTATED        0      1      4      0      1
  B4GALT6 WILD-TYPE     26     78     69     82     57
D1006V3, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                78
  CLUS_3               4                69
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALT6 MUTATED        2      4      0      0
  B4GALT6 WILD-TYPE    125     47     71     69
D1006V4, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               4                47
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B4GALT6 MUTATED        1      0      4      0      1
  B4GALT6 WILD-TYPE     83     85     81     69     46
D1006V5, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                85
  CLUS_3               4                81
  CLUS_4               0                69
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  B4GALT6 MUTATED        0      0      1      5
  B4GALT6 WILD-TYPE     95     74    120     75
D1006V6, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               0                95
  CLUS_2               0                74
  CLUS_3               1               120
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  B4GALT6 MUTATED        3      1      1      0      0      1
  B4GALT6 WILD-TYPE     49     63     71    104     40     58
D1006V7, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               1                63
  CLUS_3               1                71
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  B4GALT6 MUTATED        4      0      2
  B4GALT6 WILD-TYPE    213     75     97
D1006V8, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               4               213
  CLUS_2               0                75
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  B4GALT6 MUTATED        1      0      2
  B4GALT6 WILD-TYPE    120    108     70
D1006V9, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               1               120
  CLUS_2               0               108
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  B4GALT6 MUTATED        0      0      0      1      2
  B4GALT6 WILD-TYPE     88     66     45     54     45
D1006V10, multiclass
        clus
vv       B4GALT6 MUTATED B4GALT6 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               1                54
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1007) Variable = NAA25 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA25 MUTATED        5      8      2      0
  NAA25 WILD-TYPE    199    129     45      3
D1007V1, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             5             199
  CLUS_2             8             129
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA25 MUTATED        2      6      4      2      0
  NAA25 WILD-TYPE     37     90     40     86     80
D1007V2, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             6              90
  CLUS_3             4              40
  CLUS_4             2              86
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA25 MUTATED        1      6      5      1      2
  NAA25 WILD-TYPE     25     73     68     81     56
D1007V3, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             6              73
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA25 MUTATED        5      3      6      1
  NAA25 WILD-TYPE    122     48     65     68
D1007V4, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             3              48
  CLUS_3             6              65
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA25 MUTATED        3      6      2      2      1
  NAA25 WILD-TYPE     81     79     83     67     46
D1007V5, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             6              79
  CLUS_3             2              83
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NAA25 MUTATED        3      3      3      5
  NAA25 WILD-TYPE     92     71    118     75
D1007V6, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             3              71
  CLUS_3             3             118
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NAA25 MUTATED        2      2      2      6      1      2
  NAA25 WILD-TYPE     50     62     70     98     39     57
D1007V7, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             2              70
  CLUS_4             6              98
  CLUS_5             1              39
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA25 MUTATED       10      2      3
  NAA25 WILD-TYPE    207     73     96
D1007V8, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             2              73
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NAA25 MUTATED        3      4      4
  NAA25 WILD-TYPE    118    104     68
D1007V9, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             4             104
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NAA25 MUTATED        4      2      1      1      3
  NAA25 WILD-TYPE     84     64     44     54     44
D1007V10, multiclass
        clus
vv       NAA25 MUTATED NAA25 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             2              64
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1008) Variable = SAFB MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAFB MUTATED        0      7      1      0
  SAFB WILD-TYPE    204    130     46      3
D1008V1, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            0            204
  CLUS_2            7            130
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SAFB MUTATED        0      4      0      0      1
  SAFB WILD-TYPE     39     92     44     88     79
D1008V2, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SAFB MUTATED        2      3      2      0      1
  SAFB WILD-TYPE     24     76     71     82     57
D1008V3, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            2             24
  CLUS_2            3             76
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAFB MUTATED        2      5      1      0
  SAFB WILD-TYPE    125     46     70     69
D1008V4, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            2            125
  CLUS_2            5             46
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SAFB MUTATED        1      3      3      0      0
  SAFB WILD-TYPE     83     82     82     69     47
D1008V5, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            1             83
  CLUS_2            3             82
  CLUS_3            3             82
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SAFB MUTATED        1      3      0      3
  SAFB WILD-TYPE     94     71    121     77
D1008V6, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            1             94
  CLUS_2            3             71
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SAFB MUTATED        1      2      2      2      0      1
  SAFB WILD-TYPE     51     62     70    102     40     58
D1008V7, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            1             51
  CLUS_2            2             62
  CLUS_3            2             70
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SAFB MUTATED        5      2      1
  SAFB WILD-TYPE    212     73     98
D1008V8, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            5            212
  CLUS_2            2             73
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SAFB MUTATED        1      1      2
  SAFB WILD-TYPE    120    107     70
D1008V9, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            1            120
  CLUS_2            1            107
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SAFB MUTATED        1      1      0      0      2
  SAFB WILD-TYPE     87     65     45     55     45
D1008V10, multiclass
        clus
vv       SAFB MUTATED SAFB WILD-TYPE
  CLUS_1            1             87
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1009) Variable = ABLIM2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABLIM2 MUTATED        3      8      1      1
  ABLIM2 WILD-TYPE    201    129     46      2
D1009V1, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              8              129
  CLUS_3              1               46
  CLUS_4              1                2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABLIM2 MUTATED        1      7      2      0      2
  ABLIM2 WILD-TYPE     38     89     42     88     78
D1009V2, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              7               89
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABLIM2 MUTATED        0      7      3      2      1
  ABLIM2 WILD-TYPE     26     72     70     80     57
D1009V3, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              7               72
  CLUS_3              3               70
  CLUS_4              2               80
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABLIM2 MUTATED        2      4      6      1
  ABLIM2 WILD-TYPE    125     47     65     68
D1009V4, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              4               47
  CLUS_3              6               65
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABLIM2 MUTATED        1      2      5      2      2
  ABLIM2 WILD-TYPE     83     83     80     67     45
D1009V5, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              5               80
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABLIM2 MUTATED        3      1      2      6
  ABLIM2 WILD-TYPE     92     73    119     74
D1009V6, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABLIM2 MUTATED        3      3      3      3      2      0
  ABLIM2 WILD-TYPE     49     61     69    101     38     59
D1009V7, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              3               61
  CLUS_3              3               69
  CLUS_4              3              101
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ABLIM2 MUTATED       10      2      2
  ABLIM2 WILD-TYPE    207     73     97
D1009V8, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1             10              207
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ABLIM2 MUTATED        4      3      4
  ABLIM2 WILD-TYPE    117    105     68
D1009V9, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              3              105
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABLIM2 MUTATED        3      2      1      0      5
  ABLIM2 WILD-TYPE     85     64     44     55     42
D1009V10, multiclass
        clus
vv       ABLIM2 MUTATED ABLIM2 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              2               64
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1010) Variable = CEL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEL MUTATED        2     11      2      0
  CEL WILD-TYPE    202    126     45      3
D1010V1, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           2           202
  CLUS_2          11           126
  CLUS_3           2            45
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEL MUTATED        2      5      3      2      2
  CEL WILD-TYPE     37     91     41     86     78
D1010V2, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           2            37
  CLUS_2           5            91
  CLUS_3           3            41
  CLUS_4           2            86
  CLUS_5           2            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEL MUTATED        1      4      4      0      2
  CEL WILD-TYPE     25     75     69     82     56
D1010V3, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           1            25
  CLUS_2           4            75
  CLUS_3           4            69
  CLUS_4           0            82
  CLUS_5           2            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEL MUTATED        5      4      2      0
  CEL WILD-TYPE    122     47     69     69
D1010V4, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           5           122
  CLUS_2           4            47
  CLUS_3           2            69
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEL MUTATED        2      2      6      3      1
  CEL WILD-TYPE     82     83     79     66     46
D1010V5, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           2            82
  CLUS_2           2            83
  CLUS_3           6            79
  CLUS_4           3            66
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEL MUTATED        4      1      2      7
  CEL WILD-TYPE     91     73    119     73
D1010V6, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           4            91
  CLUS_2           1            73
  CLUS_3           2           119
  CLUS_4           7            73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEL MUTATED        3      4      1      4      1      2
  CEL WILD-TYPE     49     60     71    100     39     57
D1010V7, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           3            49
  CLUS_2           4            60
  CLUS_3           1            71
  CLUS_4           4           100
  CLUS_5           1            39
  CLUS_6           2            57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CEL MUTATED       11      2      2
  CEL WILD-TYPE    206     73     97
D1010V8, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1          11           206
  CLUS_2           2            73
  CLUS_3           2            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CEL MUTATED        7      2      4
  CEL WILD-TYPE    114    106     68
D1010V9, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           7           114
  CLUS_2           2           106
  CLUS_3           4            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEL MUTATED        3      2      3      1      4
  CEL WILD-TYPE     85     64     42     54     43
D1010V10, multiclass
        clus
vv       CEL MUTATED CEL WILD-TYPE
  CLUS_1           3            85
  CLUS_2           2            64
  CLUS_3           3            42
  CLUS_4           1            54
  CLUS_5           4            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1011) Variable = FAM178A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM178A MUTATED        2      9      0      0
  FAM178A WILD-TYPE    202    128     47      3
D1011V1, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               2               202
  CLUS_2               9               128
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM178A MUTATED        1      7      0      1      1
  FAM178A WILD-TYPE     38     89     44     87     79
D1011V2, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               1                38
  CLUS_2               7                89
  CLUS_3               0                44
  CLUS_4               1                87
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM178A MUTATED        2      1      4      0      1
  FAM178A WILD-TYPE     24     78     69     82     57
D1011V3, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               2                24
  CLUS_2               1                78
  CLUS_3               4                69
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM178A MUTATED        4      4      0      0
  FAM178A WILD-TYPE    123     47     71     69
D1011V4, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               4               123
  CLUS_2               4                47
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM178A MUTATED        1      1      7      2      0
  FAM178A WILD-TYPE     83     84     78     67     47
D1011V5, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               7                78
  CLUS_4               2                67
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM178A MUTATED        3      1      2      5
  FAM178A WILD-TYPE     92     73    119     75
D1011V6, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               3                92
  CLUS_2               1                73
  CLUS_3               2               119
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM178A MUTATED        4      3      1      2      0      1
  FAM178A WILD-TYPE     48     61     71    102     40     58
D1011V7, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               4                48
  CLUS_2               3                61
  CLUS_3               1                71
  CLUS_4               2               102
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM178A MUTATED        9      1      1
  FAM178A WILD-TYPE    208     74     98
D1011V8, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               9               208
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM178A MUTATED        7      1      2
  FAM178A WILD-TYPE    114    107     70
D1011V9, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               7               114
  CLUS_2               1               107
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM178A MUTATED        3      1      2      1      3
  FAM178A WILD-TYPE     85     65     43     54     44
D1011V10, multiclass
        clus
vv       FAM178A MUTATED FAM178A WILD-TYPE
  CLUS_1               3                85
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               1                54
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1012) Variable = BUB1B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUB1B MUTATED        2     10      0      0
  BUB1B WILD-TYPE    202    127     47      3
D1012V1, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             2             202
  CLUS_2            10             127
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BUB1B MUTATED        1      5      4      1      0
  BUB1B WILD-TYPE     38     91     40     87     80
D1012V2, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             4              40
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BUB1B MUTATED        0      4      2      1      2
  BUB1B WILD-TYPE     26     75     71     81     56
D1012V3, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUB1B MUTATED        2      5      1      1
  BUB1B WILD-TYPE    125     46     70     68
D1012V4, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             2             125
  CLUS_2             5              46
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BUB1B MUTATED        0      1      6      1      2
  BUB1B WILD-TYPE     84     84     79     68     45
D1012V5, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BUB1B MUTATED        1      0      2      7
  BUB1B WILD-TYPE     94     74    119     73
D1012V6, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             2             119
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BUB1B MUTATED        6      2      3      1      0      0
  BUB1B WILD-TYPE     46     62     69    103     40     59
D1012V7, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             6              46
  CLUS_2             2              62
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BUB1B MUTATED       11      0      1
  BUB1B WILD-TYPE    206     75     98
D1012V8, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1            11             206
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BUB1B MUTATED        6      1      3
  BUB1B WILD-TYPE    115    107     69
D1012V9, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             6             115
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BUB1B MUTATED        5      0      1      0      4
  BUB1B WILD-TYPE     83     66     44     55     43
D1012V10, multiclass
        clus
vv       BUB1B MUTATED BUB1B WILD-TYPE
  CLUS_1             5              83
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1013) Variable = EEA1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEA1 MUTATED        3     11      0      0
  EEA1 WILD-TYPE    201    126     47      3
D1013V1, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            3            201
  CLUS_2           11            126
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEA1 MUTATED        1      6      5      0      1
  EEA1 WILD-TYPE     38     90     39     88     79
D1013V2, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            6             90
  CLUS_3            5             39
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEA1 MUTATED        0      4      2      1      4
  EEA1 WILD-TYPE     26     75     71     81     54
D1013V3, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEA1 MUTATED        2      5      2      2
  EEA1 WILD-TYPE    125     46     69     67
D1013V4, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            5             46
  CLUS_3            2             69
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEA1 MUTATED        0      2      6      1      3
  EEA1 WILD-TYPE     84     83     79     68     44
D1013V5, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            6             79
  CLUS_4            1             68
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EEA1 MUTATED        2      2      1      7
  EEA1 WILD-TYPE     93     72    120     73
D1013V6, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            2             72
  CLUS_3            1            120
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EEA1 MUTATED        5      4      2      2      1      0
  EEA1 WILD-TYPE     47     60     70    102     39     59
D1013V7, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            5             47
  CLUS_2            4             60
  CLUS_3            2             70
  CLUS_4            2            102
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEA1 MUTATED       12      2      0
  EEA1 WILD-TYPE    205     73     99
D1013V8, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1           12            205
  CLUS_2            2             73
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EEA1 MUTATED        7      1      3
  EEA1 WILD-TYPE    114    107     69
D1013V9, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            7            114
  CLUS_2            1            107
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EEA1 MUTATED        6      2      1      0      2
  EEA1 WILD-TYPE     82     64     44     55     45
D1013V10, multiclass
        clus
vv       EEA1 MUTATED EEA1 WILD-TYPE
  CLUS_1            6             82
  CLUS_2            2             64
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1014) Variable = KCNH3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH3 MUTATED        2     13      2      0
  KCNH3 WILD-TYPE    202    124     45      3
D1014V1, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            13             124
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH3 MUTATED        1     11      2      1      1
  KCNH3 WILD-TYPE     38     85     42     87     79
D1014V2, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             1              38
  CLUS_2            11              85
  CLUS_3             2              42
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH3 MUTATED        0      6      3      1      4
  KCNH3 WILD-TYPE     26     73     70     81     54
D1014V3, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             6              73
  CLUS_3             3              70
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH3 MUTATED        1      7      5      1
  KCNH3 WILD-TYPE    126     44     66     68
D1014V4, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             7              44
  CLUS_3             5              66
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH3 MUTATED        1      2      8      1      3
  KCNH3 WILD-TYPE     83     83     77     68     44
D1014V5, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             8              77
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH3 MUTATED        3      1      2      9
  KCNH3 WILD-TYPE     92     73    119     71
D1014V6, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNH3 MUTATED        2      5      5      3      1      1
  KCNH3 WILD-TYPE     50     59     67    101     39     58
D1014V7, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             5              59
  CLUS_3             5              67
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH3 MUTATED       12      3      2
  KCNH3 WILD-TYPE    205     72     97
D1014V8, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             3              72
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH3 MUTATED        5      2      8
  KCNH3 WILD-TYPE    116    106     64
D1014V9, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             2             106
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH3 MUTATED        3      1      4      1      6
  KCNH3 WILD-TYPE     85     65     41     54     41
D1014V10, multiclass
        clus
vv       KCNH3 MUTATED KCNH3 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             1              54
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1015) Variable = DIP2C MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIP2C MUTATED        3     16      3      0
  DIP2C WILD-TYPE    201    121     44      3
D1015V1, multiclass
        clus
vv       DIP2C MUTATED DIP2C WILD-TYPE
  CLUS_1             3             201
  CLUS_2            16             121
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIP2C MUTATED        2      9      5      1      2
  DIP2C WILD-TYPE     37     87     39     87     78
D1015V2, multiclass
        clus
vv       DIP2C MUTATED DIP2C WILD-TYPE
  CLUS_1             2              37
  CLUS_2             9              87
  CLUS_3             5              39
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIP2C MUTATED        3      7      5      1      3
  DIP2C WILD-TYPE     23     72     68     81     55
D1015V3, multiclass
        clus
vv       DIP2C MUTATED DIP2C WILD-TYPE
  CLUS_1             3              23
  CLUS_2             7              72
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIP2C MUTATED        4     12      2      1
  DIP2C WILD-TYPE    123     39     69     68
D1015V4, multiclass
        clus
vv       DIP2C MUTATED DIP2C WILD-TYPE
  CLUS_1             4             123
  CLUS_2            12              39
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIP2C MUTATED        2      3     11      2      2
  DIP2C WILD-TYPE     82     82     74     67     45
D1015V5, multiclass
        clus
vv       DIP2C MUTATED DIP2C WILD-TYPE
  CLUS_1             2              82
  CLUS_2             3              82
  CLUS_3            11              74
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DIP2C MUTATED        5      2      3     10
  DIP2C WILD-TYPE     90     72    118     70
D1015V6, multiclass
        clus
vv       DIP2C MUTATED DIP2C WILD-TYPE
  CLUS_1             5              90
  CLUS_2             2              72
  CLUS_3             3             118
  CLUS_4            10              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DIP2C MUTATED        3      8      7      0      2      2
  DIP2C WILD-TYPE     49     56     65    104     38     57
D1015V7, multiclass
        clus
vv       DIP2C MUTATED DIP2C WILD-TYPE
  CLUS_1             3              49
  CLUS_2             8              56
  CLUS_3             7              65
  CLUS_4             0             104
  CLUS_5             2              38
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DIP2C MUTATED       19      0      3
  DIP2C WILD-TYPE    198     75     96
D1015V8, multiclass
        clus
vv       DIP2C MUTATED DIP2C WILD-TYPE
  CLUS_1            19             198
  CLUS_2             0              75
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DIP2C MUTATED        9      0      8
  DIP2C WILD-TYPE    112    108     64
D1015V9, multiclass
        clus
vv       DIP2C MUTATED DIP2C WILD-TYPE
  CLUS_1             9             112
  CLUS_2             0             108
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DIP2C MUTATED        3      0      7      0      7
  DIP2C WILD-TYPE     85     66     38     55     40
D1015V10, multiclass
        clus
vv       DIP2C MUTATED DIP2C WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             7              38
  CLUS_4             0              55
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1016) Variable = KLHL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL1 MUTATED        6      7      2      0
  KLHL1 WILD-TYPE    198    130     45      3
D1016V1, multiclass
        clus
vv       KLHL1 MUTATED KLHL1 WILD-TYPE
  CLUS_1             6             198
  CLUS_2             7             130
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHL1 MUTATED        1      6      2      3      1
  KLHL1 WILD-TYPE     38     90     42     85     79
D1016V2, multiclass
        clus
vv       KLHL1 MUTATED KLHL1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             2              42
  CLUS_4             3              85
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHL1 MUTATED        2      3      8      0      0
  KLHL1 WILD-TYPE     24     76     65     82     58
D1016V3, multiclass
        clus
vv       KLHL1 MUTATED KLHL1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             3              76
  CLUS_3             8              65
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL1 MUTATED        6      6      1      0
  KLHL1 WILD-TYPE    121     45     70     69
D1016V4, multiclass
        clus
vv       KLHL1 MUTATED KLHL1 WILD-TYPE
  CLUS_1             6             121
  CLUS_2             6              45
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHL1 MUTATED        3      3      3      3      3
  KLHL1 WILD-TYPE     81     82     82     66     44
D1016V5, multiclass
        clus
vv       KLHL1 MUTATED KLHL1 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             3              82
  CLUS_3             3              82
  CLUS_4             3              66
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KLHL1 MUTATED        4      3      4      4
  KLHL1 WILD-TYPE     91     71    117     76
D1016V6, multiclass
        clus
vv       KLHL1 MUTATED KLHL1 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             3              71
  CLUS_3             4             117
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KLHL1 MUTATED        3      3      1      3      0      5
  KLHL1 WILD-TYPE     49     61     71    101     40     54
D1016V7, multiclass
        clus
vv       KLHL1 MUTATED KLHL1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             3             101
  CLUS_5             0              40
  CLUS_6             5              54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLHL1 MUTATED        7      3      5
  KLHL1 WILD-TYPE    210     72     94
D1016V8, multiclass
        clus
vv       KLHL1 MUTATED KLHL1 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             3              72
  CLUS_3             5              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KLHL1 MUTATED        5      3      4
  KLHL1 WILD-TYPE    116    105     68
D1016V9, multiclass
        clus
vv       KLHL1 MUTATED KLHL1 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             3             105
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KLHL1 MUTATED        0      3      3      2      4
  KLHL1 WILD-TYPE     88     63     42     53     43
D1016V10, multiclass
        clus
vv       KLHL1 MUTATED KLHL1 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             3              63
  CLUS_3             3              42
  CLUS_4             2              53
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1017) Variable = ZC3H3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H3 MUTATED        5     12      2      0
  ZC3H3 WILD-TYPE    199    125     45      3
D1017V1, multiclass
        clus
vv       ZC3H3 MUTATED ZC3H3 WILD-TYPE
  CLUS_1             5             199
  CLUS_2            12             125
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H3 MUTATED        2     12      1      1      0
  ZC3H3 WILD-TYPE     37     84     43     87     80
D1017V2, multiclass
        clus
vv       ZC3H3 MUTATED ZC3H3 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            12              84
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H3 MUTATED        1      4      5      1      4
  ZC3H3 WILD-TYPE     25     75     68     81     54
D1017V3, multiclass
        clus
vv       ZC3H3 MUTATED ZC3H3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H3 MUTATED        4      7      1      3
  ZC3H3 WILD-TYPE    123     44     70     66
D1017V4, multiclass
        clus
vv       ZC3H3 MUTATED ZC3H3 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             7              44
  CLUS_3             1              70
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H3 MUTATED        2      2      9      2      4
  ZC3H3 WILD-TYPE     82     83     76     67     43
D1017V5, multiclass
        clus
vv       ZC3H3 MUTATED ZC3H3 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             2              83
  CLUS_3             9              76
  CLUS_4             2              67
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H3 MUTATED        5      3      3      8
  ZC3H3 WILD-TYPE     90     71    118     72
D1017V6, multiclass
        clus
vv       ZC3H3 MUTATED ZC3H3 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             3              71
  CLUS_3             3             118
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H3 MUTATED        8      5      2      2      1      1
  ZC3H3 WILD-TYPE     44     59     70    102     39     58
D1017V7, multiclass
        clus
vv       ZC3H3 MUTATED ZC3H3 WILD-TYPE
  CLUS_1             8              44
  CLUS_2             5              59
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZC3H3 MUTATED       15      1      3
  ZC3H3 WILD-TYPE    202     74     96
D1017V8, multiclass
        clus
vv       ZC3H3 MUTATED ZC3H3 WILD-TYPE
  CLUS_1            15             202
  CLUS_2             1              74
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZC3H3 MUTATED        7      1      3
  ZC3H3 WILD-TYPE    114    107     69
D1017V9, multiclass
        clus
vv       ZC3H3 MUTATED ZC3H3 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H3 MUTATED        3      0      2      1      5
  ZC3H3 WILD-TYPE     85     66     43     54     42
D1017V10, multiclass
        clus
vv       ZC3H3 MUTATED ZC3H3 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1018) Variable = SLC22A16 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A16 MUTATED        1      9      1      0
  SLC22A16 WILD-TYPE    203    128     46      3
D1018V1, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                9                128
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC22A16 MUTATED        1      6      1      0      1
  SLC22A16 WILD-TYPE     38     90     43     88     79
D1018V2, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                6                 90
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC22A16 MUTATED        0      5      3      0      1
  SLC22A16 WILD-TYPE     26     74     70     82     57
D1018V3, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                5                 74
  CLUS_3                3                 70
  CLUS_4                0                 82
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A16 MUTATED        1      5      3      0
  SLC22A16 WILD-TYPE    126     46     68     69
D1018V4, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                1                126
  CLUS_2                5                 46
  CLUS_3                3                 68
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC22A16 MUTATED        0      1      6      2      1
  SLC22A16 WILD-TYPE     84     84     79     67     46
D1018V5, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                6                 79
  CLUS_4                2                 67
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC22A16 MUTATED        3      1      1      5
  SLC22A16 WILD-TYPE     92     73    120     75
D1018V6, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                3                 92
  CLUS_2                1                 73
  CLUS_3                1                120
  CLUS_4                5                 75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC22A16 MUTATED        2      5      2      2      0      0
  SLC22A16 WILD-TYPE     50     59     70    102     40     59
D1018V7, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                5                 59
  CLUS_3                2                 70
  CLUS_4                2                102
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC22A16 MUTATED       10      0      1
  SLC22A16 WILD-TYPE    207     75     98
D1018V8, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1               10                207
  CLUS_2                0                 75
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC22A16 MUTATED        4      1      4
  SLC22A16 WILD-TYPE    117    107     68
D1018V9, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                1                107
  CLUS_3                4                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC22A16 MUTATED        1      0      2      1      5
  SLC22A16 WILD-TYPE     87     66     43     54     42
D1018V10, multiclass
        clus
vv       SLC22A16 MUTATED SLC22A16 WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                0                 66
  CLUS_3                2                 43
  CLUS_4                1                 54
  CLUS_5                5                 42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1019) Variable = NHLRC2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHLRC2 MUTATED        0      7      0      0
  NHLRC2 WILD-TYPE    204    130     47      3
D1019V1, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NHLRC2 MUTATED        1      5      0      0      0
  NHLRC2 WILD-TYPE     38     91     44     88     80
D1019V2, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NHLRC2 MUTATED        0      0      1      1      4
  NHLRC2 WILD-TYPE     26     79     72     81     54
D1019V3, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               79
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHLRC2 MUTATED        0      5      0      1
  NHLRC2 WILD-TYPE    127     46     71     68
D1019V4, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              5               46
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NHLRC2 MUTATED        0      1      4      1      1
  NHLRC2 WILD-TYPE     84     84     81     68     46
D1019V5, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              4               81
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NHLRC2 MUTATED        2      1      0      4
  NHLRC2 WILD-TYPE     93     73    121     76
D1019V6, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NHLRC2 MUTATED        2      2      1      0      2      0
  NHLRC2 WILD-TYPE     50     62     71    104     38     59
D1019V7, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              2               38
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NHLRC2 MUTATED        6      1      0
  NHLRC2 WILD-TYPE    211     74     99
D1019V8, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NHLRC2 MUTATED        4      0      2
  NHLRC2 WILD-TYPE    117    108     70
D1019V9, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NHLRC2 MUTATED        2      0      1      0      3
  NHLRC2 WILD-TYPE     86     66     44     55     44
D1019V10, multiclass
        clus
vv       NHLRC2 MUTATED NHLRC2 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1020) Variable = CEACAM3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM3 MUTATED        1      6      1      0
  CEACAM3 WILD-TYPE    203    131     46      3
D1020V1, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               6               131
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM3 MUTATED        1      5      1      0      1
  CEACAM3 WILD-TYPE     38     91     43     88     79
D1020V2, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               5                91
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM3 MUTATED        1      3      2      0      2
  CEACAM3 WILD-TYPE     25     76     71     82     56
D1020V3, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                76
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM3 MUTATED        1      5      1      1
  CEACAM3 WILD-TYPE    126     46     70     68
D1020V4, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               5                46
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM3 MUTATED        1      1      5      0      1
  CEACAM3 WILD-TYPE     83     84     80     69     46
D1020V5, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               5                80
  CLUS_4               0                69
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CEACAM3 MUTATED        1      1      2      4
  CEACAM3 WILD-TYPE     94     73    119     76
D1020V6, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               2               119
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CEACAM3 MUTATED        2      4      1      1      1      0
  CEACAM3 WILD-TYPE     50     60     71    103     39     59
D1020V7, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               4                60
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM3 MUTATED        9      0      0
  CEACAM3 WILD-TYPE    208     75     99
D1020V8, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               9               208
  CLUS_2               0                75
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CEACAM3 MUTATED        2      1      5
  CEACAM3 WILD-TYPE    119    107     67
D1020V9, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               1               107
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CEACAM3 MUTATED        3      0      2      0      3
  CEACAM3 WILD-TYPE     85     66     43     55     44
D1020V10, multiclass
        clus
vv       CEACAM3 MUTATED CEACAM3 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               0                66
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1021) Variable = THBS3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THBS3 MUTATED        3      6      1      0
  THBS3 WILD-TYPE    201    131     46      3
D1021V1, multiclass
        clus
vv       THBS3 MUTATED THBS3 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             6             131
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THBS3 MUTATED        0      7      0      0      1
  THBS3 WILD-TYPE     39     89     44     88     79
D1021V2, multiclass
        clus
vv       THBS3 MUTATED THBS3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              89
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THBS3 MUTATED        1      3      3      0      3
  THBS3 WILD-TYPE     25     76     70     82     55
D1021V3, multiclass
        clus
vv       THBS3 MUTATED THBS3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THBS3 MUTATED        3      6      1      0
  THBS3 WILD-TYPE    124     45     70     69
D1021V4, multiclass
        clus
vv       THBS3 MUTATED THBS3 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             6              45
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THBS3 MUTATED        0      0      7      1      2
  THBS3 WILD-TYPE     84     85     78     68     45
D1021V5, multiclass
        clus
vv       THBS3 MUTATED THBS3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             7              78
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  THBS3 MUTATED        4      0      1      5
  THBS3 WILD-TYPE     91     74    120     75
D1021V6, multiclass
        clus
vv       THBS3 MUTATED THBS3 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  THBS3 MUTATED        5      3      2      0      0      0
  THBS3 WILD-TYPE     47     61     70    104     40     59
D1021V7, multiclass
        clus
vv       THBS3 MUTATED THBS3 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             3              61
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS3 MUTATED        9      0      1
  THBS3 WILD-TYPE    208     75     98
D1021V8, multiclass
        clus
vv       THBS3 MUTATED THBS3 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  THBS3 MUTATED        2      0      4
  THBS3 WILD-TYPE    119    108     68
D1021V9, multiclass
        clus
vv       THBS3 MUTATED THBS3 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  THBS3 MUTATED        1      0      2      0      3
  THBS3 WILD-TYPE     87     66     43     55     44
D1021V10, multiclass
        clus
vv       THBS3 MUTATED THBS3 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1022) Variable = GPC4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPC4 MUTATED        1      5      1      0
  GPC4 WILD-TYPE    203    132     46      3
D1022V1, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            5            132
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPC4 MUTATED        0      4      2      1      0
  GPC4 WILD-TYPE     39     92     42     87     80
D1022V2, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPC4 MUTATED        0      2      3      1      0
  GPC4 WILD-TYPE     26     77     70     81     58
D1022V3, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            2             77
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPC4 MUTATED        2      2      2      0
  GPC4 WILD-TYPE    125     49     69     69
D1022V4, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            2             49
  CLUS_3            2             69
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPC4 MUTATED        0      0      2      1      5
  GPC4 WILD-TYPE     84     85     83     68     42
D1022V5, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            2             83
  CLUS_4            1             68
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPC4 MUTATED        3      0      0      5
  GPC4 WILD-TYPE     92     74    121     75
D1022V6, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            0             74
  CLUS_3            0            121
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPC4 MUTATED        3      3      2      0      0      0
  GPC4 WILD-TYPE     49     61     70    104     40     59
D1022V7, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            3             61
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPC4 MUTATED        8      0      0
  GPC4 WILD-TYPE    209     75     99
D1022V8, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            8            209
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GPC4 MUTATED        5      0      2
  GPC4 WILD-TYPE    116    108     70
D1022V9, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPC4 MUTATED        3      0      2      0      2
  GPC4 WILD-TYPE     85     66     43     55     45
D1022V10, multiclass
        clus
vv       GPC4 MUTATED GPC4 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1023) Variable = ABTB1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABTB1 MUTATED        3      7      0      0
  ABTB1 WILD-TYPE    201    130     47      3
D1023V1, multiclass
        clus
vv       ABTB1 MUTATED ABTB1 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABTB1 MUTATED        0      6      1      1      0
  ABTB1 WILD-TYPE     39     90     43     87     80
D1023V2, multiclass
        clus
vv       ABTB1 MUTATED ABTB1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABTB1 MUTATED        1      4      2      1      1
  ABTB1 WILD-TYPE     25     75     71     81     57
D1023V3, multiclass
        clus
vv       ABTB1 MUTATED ABTB1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABTB1 MUTATED        1      6      1      1
  ABTB1 WILD-TYPE    126     45     70     68
D1023V4, multiclass
        clus
vv       ABTB1 MUTATED ABTB1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             6              45
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABTB1 MUTATED        0      2      3      1      2
  ABTB1 WILD-TYPE     84     83     82     68     45
D1023V5, multiclass
        clus
vv       ABTB1 MUTATED ABTB1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABTB1 MUTATED        1      2      1      4
  ABTB1 WILD-TYPE     94     72    120     76
D1023V6, multiclass
        clus
vv       ABTB1 MUTATED ABTB1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABTB1 MUTATED        3      3      1      2      0      1
  ABTB1 WILD-TYPE     49     61     71    102     40     58
D1023V7, multiclass
        clus
vv       ABTB1 MUTATED ABTB1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABTB1 MUTATED        7      2      1
  ABTB1 WILD-TYPE    210     73     98
D1023V8, multiclass
        clus
vv       ABTB1 MUTATED ABTB1 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             2              73
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABTB1 MUTATED        4      1      2
  ABTB1 WILD-TYPE    117    107     70
D1023V9, multiclass
        clus
vv       ABTB1 MUTATED ABTB1 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABTB1 MUTATED        0      2      1      1      3
  ABTB1 WILD-TYPE     88     64     44     54     44
D1023V10, multiclass
        clus
vv       ABTB1 MUTATED ABTB1 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             2              64
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1024) Variable = NEK7 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK7 MUTATED        0      5      1      0
  NEK7 WILD-TYPE    204    132     46      3
D1024V1, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            5            132
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEK7 MUTATED        2      2      0      0      0
  NEK7 WILD-TYPE     37     94     44     88     80
D1024V2, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            2             94
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEK7 MUTATED        1      1      3      0      1
  NEK7 WILD-TYPE     25     78     70     82     57
D1024V3, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            1             78
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK7 MUTATED        2      3      1      0
  NEK7 WILD-TYPE    125     48     70     69
D1024V4, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            3             48
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEK7 MUTATED        1      0      1      2      2
  NEK7 WILD-TYPE     83     85     84     67     45
D1024V5, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            0             85
  CLUS_3            1             84
  CLUS_4            2             67
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NEK7 MUTATED        3      0      0      3
  NEK7 WILD-TYPE     92     74    121     77
D1024V6, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            0             74
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NEK7 MUTATED        2      2      0      0      1      1
  NEK7 WILD-TYPE     50     62     72    104     39     58
D1024V7, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            2             62
  CLUS_3            0             72
  CLUS_4            0            104
  CLUS_5            1             39
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEK7 MUTATED        3      0      3
  NEK7 WILD-TYPE    214     75     96
D1024V8, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            3            214
  CLUS_2            0             75
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NEK7 MUTATED        1      0      2
  NEK7 WILD-TYPE    120    108     70
D1024V9, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            1            120
  CLUS_2            0            108
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NEK7 MUTATED        0      0      0      0      3
  NEK7 WILD-TYPE     88     66     45     55     44
D1024V10, multiclass
        clus
vv       NEK7 MUTATED NEK7 WILD-TYPE
  CLUS_1            0             88
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1025) Variable = QTRTD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  QTRTD1 MUTATED        3      3      0      0
  QTRTD1 WILD-TYPE    201    134     47      3
D1025V1, multiclass
        clus
vv       QTRTD1 MUTATED QTRTD1 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              3              134
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  QTRTD1 MUTATED        1      2      0      1      0
  QTRTD1 WILD-TYPE     38     94     44     87     80
D1025V2, multiclass
        clus
vv       QTRTD1 MUTATED QTRTD1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              2               94
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  QTRTD1 MUTATED        0      2      2      0      1
  QTRTD1 WILD-TYPE     26     77     71     82     57
D1025V3, multiclass
        clus
vv       QTRTD1 MUTATED QTRTD1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  QTRTD1 MUTATED        1      2      2      0
  QTRTD1 WILD-TYPE    126     49     69     69
D1025V4, multiclass
        clus
vv       QTRTD1 MUTATED QTRTD1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  QTRTD1 MUTATED        2      0      3      0      1
  QTRTD1 WILD-TYPE     82     85     82     69     46
D1025V5, multiclass
        clus
vv       QTRTD1 MUTATED QTRTD1 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              0               85
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  QTRTD1 MUTATED        2      0      2      2
  QTRTD1 WILD-TYPE     93     74    119     78
D1025V6, multiclass
        clus
vv       QTRTD1 MUTATED QTRTD1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0               74
  CLUS_3              2              119
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  QTRTD1 MUTATED        1      4      0      0      0      1
  QTRTD1 WILD-TYPE     51     60     72    104     40     58
D1025V7, multiclass
        clus
vv       QTRTD1 MUTATED QTRTD1 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              4               60
  CLUS_3              0               72
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  QTRTD1 MUTATED        3      0      3
  QTRTD1 WILD-TYPE    214     75     96
D1025V8, multiclass
        clus
vv       QTRTD1 MUTATED QTRTD1 WILD-TYPE
  CLUS_1              3              214
  CLUS_2              0               75
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  QTRTD1 MUTATED        1      0      2
  QTRTD1 WILD-TYPE    120    108     70
D1025V9, multiclass
        clus
vv       QTRTD1 MUTATED QTRTD1 WILD-TYPE
  CLUS_1              1              120
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  QTRTD1 MUTATED        0      0      1      1      1
  QTRTD1 WILD-TYPE     88     66     44     54     46
D1025V10, multiclass
        clus
vv       QTRTD1 MUTATED QTRTD1 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1026) Variable = UACA MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UACA MUTATED        2     10      2      0
  UACA WILD-TYPE    202    127     45      3
D1026V1, multiclass
        clus
vv       UACA MUTATED UACA WILD-TYPE
  CLUS_1            2            202
  CLUS_2           10            127
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UACA MUTATED        2      6      2      0      0
  UACA WILD-TYPE     37     90     42     88     80
D1026V2, multiclass
        clus
vv       UACA MUTATED UACA WILD-TYPE
  CLUS_1            2             37
  CLUS_2            6             90
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UACA MUTATED        0      4      3      1      4
  UACA WILD-TYPE     26     75     70     81     54
D1026V3, multiclass
        clus
vv       UACA MUTATED UACA WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UACA MUTATED        1      8      2      1
  UACA WILD-TYPE    126     43     69     68
D1026V4, multiclass
        clus
vv       UACA MUTATED UACA WILD-TYPE
  CLUS_1            1            126
  CLUS_2            8             43
  CLUS_3            2             69
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UACA MUTATED        0      2      6      3      3
  UACA WILD-TYPE     84     83     79     66     44
D1026V5, multiclass
        clus
vv       UACA MUTATED UACA WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            6             79
  CLUS_4            3             66
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  UACA MUTATED        3      1      0     10
  UACA WILD-TYPE     92     73    121     70
D1026V6, multiclass
        clus
vv       UACA MUTATED UACA WILD-TYPE
  CLUS_1            3             92
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4           10             70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  UACA MUTATED        6      6      1      1      0      0
  UACA WILD-TYPE     46     58     71    103     40     59
D1026V7, multiclass
        clus
vv       UACA MUTATED UACA WILD-TYPE
  CLUS_1            6             46
  CLUS_2            6             58
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UACA MUTATED       12      1      1
  UACA WILD-TYPE    205     74     98
D1026V8, multiclass
        clus
vv       UACA MUTATED UACA WILD-TYPE
  CLUS_1           12            205
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  UACA MUTATED        4      1      4
  UACA WILD-TYPE    117    107     68
D1026V9, multiclass
        clus
vv       UACA MUTATED UACA WILD-TYPE
  CLUS_1            4            117
  CLUS_2            1            107
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  UACA MUTATED        3      1      1      0      4
  UACA WILD-TYPE     85     65     44     55     43
D1026V10, multiclass
        clus
vv       UACA MUTATED UACA WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1027) Variable = TMEM206 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM206 MUTATED        2      5      0      0
  TMEM206 WILD-TYPE    202    132     47      3
D1027V1, multiclass
        clus
vv       TMEM206 MUTATED TMEM206 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               5               132
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM206 MUTATED        0      3      1      0      0
  TMEM206 WILD-TYPE     39     93     43     88     80
D1027V2, multiclass
        clus
vv       TMEM206 MUTATED TMEM206 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM206 MUTATED        0      3      2      0      1
  TMEM206 WILD-TYPE     26     76     71     82     57
D1027V3, multiclass
        clus
vv       TMEM206 MUTATED TMEM206 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               3                76
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM206 MUTATED        2      2      2      0
  TMEM206 WILD-TYPE    125     49     69     69
D1027V4, multiclass
        clus
vv       TMEM206 MUTATED TMEM206 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               2                49
  CLUS_3               2                69
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM206 MUTATED        0      0      4      2      1
  TMEM206 WILD-TYPE     84     85     81     67     46
D1027V5, multiclass
        clus
vv       TMEM206 MUTATED TMEM206 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               4                81
  CLUS_4               2                67
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM206 MUTATED        4      1      0      2
  TMEM206 WILD-TYPE     91     73    121     78
D1027V6, multiclass
        clus
vv       TMEM206 MUTATED TMEM206 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM206 MUTATED        2      5      0      0      0      0
  TMEM206 WILD-TYPE     50     59     72    104     40     59
D1027V7, multiclass
        clus
vv       TMEM206 MUTATED TMEM206 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               5                59
  CLUS_3               0                72
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM206 MUTATED        6      0      1
  TMEM206 WILD-TYPE    211     75     98
D1027V8, multiclass
        clus
vv       TMEM206 MUTATED TMEM206 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM206 MUTATED        2      0      2
  TMEM206 WILD-TYPE    119    108     70
D1027V9, multiclass
        clus
vv       TMEM206 MUTATED TMEM206 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               0               108
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM206 MUTATED        1      0      1      0      2
  TMEM206 WILD-TYPE     87     66     44     55     45
D1027V10, multiclass
        clus
vv       TMEM206 MUTATED TMEM206 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1028) Variable = CDKN2AIP MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2AIP MUTATED        1      2      0      0
  CDKN2AIP WILD-TYPE    203    135     47      3
D1028V1, multiclass
        clus
vv       CDKN2AIP MUTATED CDKN2AIP WILD-TYPE
  CLUS_1                1                203
  CLUS_2                2                135
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2AIP MUTATED        0      3      0      0      0
  CDKN2AIP WILD-TYPE     39     93     44     88     80
D1028V2, multiclass
        clus
vv       CDKN2AIP MUTATED CDKN2AIP WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                3                 93
  CLUS_3                0                 44
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2AIP MUTATED        0      1      1      0      0
  CDKN2AIP WILD-TYPE     26     78     72     82     58
D1028V3, multiclass
[1] "Remove cluster labels:" "CDKN2AIP MUTATED"      
clus
  CDKN2AIP MUTATED CDKN2AIP WILD-TYPE 
                 2                316 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-B7-A5TI 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-B7-A5TJ         TCGA-B7-A5TK         TCGA-B7-A5TN 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4183         TCGA-BR-4184         TCGA-BR-4187 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4188         TCGA-BR-4191         TCGA-BR-4201 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4253         TCGA-BR-4255         TCGA-BR-4256 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4257         TCGA-BR-4267         TCGA-BR-4279 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4280         TCGA-BR-4292         TCGA-BR-4294 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4357         TCGA-BR-4361         TCGA-BR-4362 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4363         TCGA-BR-4366         TCGA-BR-4368 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4369         TCGA-BR-4370         TCGA-BR-4371 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-6452         TCGA-BR-6453         TCGA-BR-6454 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6456         TCGA-BR-6457 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-6458         TCGA-BR-6564         TCGA-BR-6565 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-6566         TCGA-BR-6705         TCGA-BR-6706 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-6707         TCGA-BR-6709         TCGA-BR-6710 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-6801         TCGA-BR-6802         TCGA-BR-6803 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-6852         TCGA-BR-7196         TCGA-BR-7197 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-7703         TCGA-BR-7704         TCGA-BR-7715 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-7716         TCGA-BR-7717         TCGA-BR-7722 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-7723         TCGA-BR-7851         TCGA-BR-7901 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-7957         TCGA-BR-7958         TCGA-BR-7959 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8058         TCGA-BR-8059         TCGA-BR-8060 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8080         TCGA-BR-8081         TCGA-BR-8284 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8285         TCGA-BR-8286         TCGA-BR-8289 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8291         TCGA-BR-8295         TCGA-BR-8297 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8360         TCGA-BR-8361         TCGA-BR-8363 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8364         TCGA-BR-8365         TCGA-BR-8366 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8367         TCGA-BR-8368         TCGA-BR-8369 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8380         TCGA-BR-8381         TCGA-BR-8382 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8384         TCGA-BR-8483         TCGA-BR-8484 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8485         TCGA-BR-8486         TCGA-BR-8588 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8589         TCGA-BR-8590         TCGA-BR-8591 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8592         TCGA-BR-8676         TCGA-BR-8677 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8678         TCGA-BR-8679         TCGA-BR-8680 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8682         TCGA-BR-8683         TCGA-BR-8686 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8687         TCGA-BR-8690         TCGA-BR-A44T 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A44U         TCGA-BR-A452         TCGA-BR-A453 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A4CQ         TCGA-BR-A4CR         TCGA-BR-A4CS 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A4IU         TCGA-BR-A4IV         TCGA-BR-A4IY 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A4IZ         TCGA-BR-A4J1         TCGA-BR-A4J2 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A4J4         TCGA-BR-A4J5         TCGA-BR-A4J6 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A4J7         TCGA-BR-A4J8         TCGA-BR-A4PD 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A4PE         TCGA-BR-A4PF         TCGA-BR-A4QI 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A4QL         TCGA-BR-A4QM         TCGA-CD-5798 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-5799         TCGA-CD-5800         TCGA-CD-5801 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-5802         TCGA-CD-5803         TCGA-CD-5804 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-5813         TCGA-CD-8524         TCGA-CD-8525 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-8526         TCGA-CD-8527         TCGA-CD-8528 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-8529         TCGA-CD-8530         TCGA-CD-8531 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-8532         TCGA-CD-8533         TCGA-CD-8534 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-8535         TCGA-CD-8536         TCGA-CD-A486 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-A487         TCGA-CD-A489         TCGA-CD-A48A 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-A48C         TCGA-CD-A4MG         TCGA-CD-A4MH 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-A4MI         TCGA-CD-A4MJ         TCGA-CG-4300 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-4301         TCGA-CG-4304         TCGA-CG-4305 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-4306         TCGA-CG-4436         TCGA-CG-4437 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-4438         TCGA-CG-4442         TCGA-CG-4443 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4465         TCGA-CG-4466 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-4469         TCGA-CG-4474         TCGA-CG-4475 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-4476         TCGA-CG-4477         TCGA-CG-5716 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5723 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-5724         TCGA-CG-5725         TCGA-CG-5726 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-5727         TCGA-CG-5728         TCGA-CG-5730 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-5732         TCGA-CG-5733         TCGA-CG-5734 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-5577         TCGA-D7-5578         TCGA-D7-5579 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-6518         TCGA-D7-6519         TCGA-D7-6520 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-6521         TCGA-D7-6522         TCGA-D7-6524 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-6525         TCGA-D7-6527         TCGA-D7-6528 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-6815         TCGA-D7-6817         TCGA-D7-6818 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-6820         TCGA-D7-6822         TCGA-D7-8570 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-8572         TCGA-D7-8573         TCGA-D7-8574 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-8575         TCGA-D7-8578         TCGA-D7-A4YT 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-A4YU         TCGA-D7-A4YV         TCGA-D7-A4YX 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-A4Z0         TCGA-D7-A6EV         TCGA-D7-A6EX 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-A6EY         TCGA-D7-A6EZ         TCGA-D7-A6F0 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-A748         TCGA-EQ-8122         TCGA-EQ-A4SO 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-F1-6177         TCGA-F1-6874         TCGA-F1-6875 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-F1-A448         TCGA-F1-A72C         TCGA-FP-7916 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-FP-7998         TCGA-HF-7131         TCGA-HF-7132 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-HF-7133         TCGA-HF-7134         TCGA-HF-7136 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-HF-A5NB         TCGA-HJ-7597         TCGA-HU-8602 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-HU-8608         TCGA-HU-8610         TCGA-HU-A4GF 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-HU-A4GQ         TCGA-HU-A4GT         TCGA-HU-A4GU 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-HU-A4GX         TCGA-HU-A4GY         TCGA-HU-A4H2 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-HU-A4H3         TCGA-HU-A4H5         TCGA-HU-A4HD 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-IN-7806         TCGA-IN-7808         TCGA-IN-8462 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-IN-8663         TCGA-IN-A6RI         TCGA-IN-A6RL 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-IN-A6RN         TCGA-IN-A6RO         TCGA-IN-A6RR 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-IN-A6RS         TCGA-IN-A7NR         TCGA-IN-A7NT 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-IN-A7NU         TCGA-IN-AB1V         TCGA-IN-AB1X 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-IP-7968         TCGA-KB-A6F5         TCGA-KB-A93G 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-MX-A5UG         TCGA-RD-A7BS         TCGA-RD-A7BT 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-RD-A7BW         TCGA-RD-A7C1         TCGA-RD-A8MV 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-RD-A8MW         TCGA-RD-A8N0         TCGA-RD-A8N1 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-SW-A7EA         TCGA-SW-A7EB         TCGA-VQ-A8DL 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-VQ-A8DT         TCGA-VQ-A8DU         TCGA-VQ-A8E2 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-VQ-A8E7         TCGA-VQ-A8P2         TCGA-VQ-A8P3 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-VQ-A8PE         TCGA-VQ-A8PK         TCGA-VQ-A8PM 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-VQ-A8PQ         TCGA-VQ-A91U         TCGA-VQ-A91V 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-VQ-A92D         TCGA-VQ-AA64         TCGA-VQ-AA69 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-VQ-AA6A         TCGA-VQ-AA6B         TCGA-VQ-AA6F 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-VQ-AA6G         TCGA-VQ-AA6I         TCGA-VQ-AA6K 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-ZA-A8F6 
"CDKN2AIP WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2AIP MUTATED        0      1      1      0
  CDKN2AIP WILD-TYPE    127     50     70     69
D1028V4, multiclass
[1] "Remove cluster labels:" "CDKN2AIP MUTATED"      
clus
  CDKN2AIP MUTATED CDKN2AIP WILD-TYPE 
                 2                316 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-B7-A5TI 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-B7-A5TJ         TCGA-B7-A5TK         TCGA-B7-A5TN 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4183         TCGA-BR-4184         TCGA-BR-4187 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4188         TCGA-BR-4191         TCGA-BR-4201 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4253         TCGA-BR-4255         TCGA-BR-4256 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4257         TCGA-BR-4267         TCGA-BR-4279 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4280         TCGA-BR-4292         TCGA-BR-4294 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4357         TCGA-BR-4361         TCGA-BR-4362 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4363         TCGA-BR-4366         TCGA-BR-4368 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-4369         TCGA-BR-4370         TCGA-BR-4371 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-6452         TCGA-BR-6453         TCGA-BR-6454 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-6455         TCGA-BR-6456         TCGA-BR-6457 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-6458         TCGA-BR-6564         TCGA-BR-6565 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-6566         TCGA-BR-6705         TCGA-BR-6706 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-6707         TCGA-BR-6709         TCGA-BR-6710 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-6801         TCGA-BR-6802         TCGA-BR-6803 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-6852         TCGA-BR-7196         TCGA-BR-7197 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-7703         TCGA-BR-7704         TCGA-BR-7715 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-7716         TCGA-BR-7717         TCGA-BR-7722 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-7723         TCGA-BR-7851         TCGA-BR-7901 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-7957         TCGA-BR-7958         TCGA-BR-7959 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8058         TCGA-BR-8059         TCGA-BR-8060 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8080         TCGA-BR-8081         TCGA-BR-8284 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8285         TCGA-BR-8286         TCGA-BR-8289 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8291         TCGA-BR-8295         TCGA-BR-8297 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8360         TCGA-BR-8361         TCGA-BR-8363 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8364         TCGA-BR-8365         TCGA-BR-8366 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8367         TCGA-BR-8368         TCGA-BR-8369 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8370         TCGA-BR-8371         TCGA-BR-8372 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8380         TCGA-BR-8381         TCGA-BR-8382 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8384         TCGA-BR-8483         TCGA-BR-8484 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8485         TCGA-BR-8486         TCGA-BR-8588 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8589         TCGA-BR-8590         TCGA-BR-8591 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8592         TCGA-BR-8676         TCGA-BR-8677 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8678         TCGA-BR-8679         TCGA-BR-8680 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8682         TCGA-BR-8683         TCGA-BR-8686 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-8687         TCGA-BR-8690         TCGA-BR-A44T 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A44U         TCGA-BR-A452         TCGA-BR-A453 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A4CQ         TCGA-BR-A4CR         TCGA-BR-A4CS 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A4IU         TCGA-BR-A4IV         TCGA-BR-A4IY 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A4IZ         TCGA-BR-A4J1         TCGA-BR-A4J2 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A4J4         TCGA-BR-A4J5         TCGA-BR-A4J6 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A4J7         TCGA-BR-A4J8         TCGA-BR-A4PD 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A4PE         TCGA-BR-A4PF         TCGA-BR-A4QI 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-BR-A4QL         TCGA-BR-A4QM         TCGA-CD-5798 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-5799         TCGA-CD-5800         TCGA-CD-5801 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-5802         TCGA-CD-5803         TCGA-CD-5804 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-5813         TCGA-CD-8524         TCGA-CD-8525 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-8526         TCGA-CD-8527         TCGA-CD-8528 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-8529         TCGA-CD-8530         TCGA-CD-8531 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-8532         TCGA-CD-8533         TCGA-CD-8534 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-8535         TCGA-CD-8536         TCGA-CD-A486 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-A487         TCGA-CD-A489         TCGA-CD-A48A 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-A48C         TCGA-CD-A4MG         TCGA-CD-A4MH 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CD-A4MI         TCGA-CD-A4MJ         TCGA-CG-4300 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-4301         TCGA-CG-4304         TCGA-CG-4305 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-4306         TCGA-CG-4436         TCGA-CG-4437 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-4438         TCGA-CG-4442         TCGA-CG-4443 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-4444         TCGA-CG-4449         TCGA-CG-4455 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-4460         TCGA-CG-4465         TCGA-CG-4466 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-4469         TCGA-CG-4474         TCGA-CG-4475 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-4476         TCGA-CG-4477         TCGA-CG-5716 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-5717         TCGA-CG-5718         TCGA-CG-5719 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-5720         TCGA-CG-5721         TCGA-CG-5723 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-5724         TCGA-CG-5725         TCGA-CG-5726 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-5727         TCGA-CG-5728         TCGA-CG-5730 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-CG-5732         TCGA-CG-5733         TCGA-CG-5734 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-5577         TCGA-D7-5578         TCGA-D7-5579 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-6518         TCGA-D7-6519         TCGA-D7-6520 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-6521         TCGA-D7-6522         TCGA-D7-6524 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-6525         TCGA-D7-6527         TCGA-D7-6528 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-6815         TCGA-D7-6817         TCGA-D7-6818 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-6820         TCGA-D7-6822         TCGA-D7-8570 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-8572         TCGA-D7-8573         TCGA-D7-8574 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-8575         TCGA-D7-8578         TCGA-D7-A4YT 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-A4YU         TCGA-D7-A4YV         TCGA-D7-A4YX 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-A4Z0         TCGA-D7-A6EV         TCGA-D7-A6EX 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-A6EY         TCGA-D7-A6EZ         TCGA-D7-A6F0 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-D7-A748         TCGA-EQ-8122         TCGA-EQ-A4SO 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-F1-6177         TCGA-F1-6874         TCGA-F1-6875 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-F1-A448         TCGA-F1-A72C         TCGA-FP-7916 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-FP-7998         TCGA-HF-7131         TCGA-HF-7132 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-HF-7133         TCGA-HF-7134         TCGA-HF-7136 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-HF-A5NB         TCGA-HJ-7597         TCGA-HU-8602 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-HU-8608         TCGA-HU-8610         TCGA-HU-A4GF 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-HU-A4GQ         TCGA-HU-A4GT         TCGA-HU-A4GU 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-HU-A4GX         TCGA-HU-A4GY         TCGA-HU-A4H2 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-HU-A4H3         TCGA-HU-A4H5         TCGA-HU-A4HD 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-IN-7806         TCGA-IN-7808         TCGA-IN-8462 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-IN-8663         TCGA-IN-A6RI         TCGA-IN-A6RL 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-IN-A6RN         TCGA-IN-A6RO         TCGA-IN-A6RR 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-IN-A6RS         TCGA-IN-A7NR         TCGA-IN-A7NT 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-IN-A7NU         TCGA-IN-AB1V         TCGA-IN-AB1X 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-IP-7968         TCGA-KB-A6F5         TCGA-KB-A93G 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-MX-A5UG         TCGA-RD-A7BS         TCGA-RD-A7BT 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-RD-A7BW         TCGA-RD-A7C1         TCGA-RD-A8MV 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-RD-A8MW         TCGA-RD-A8N0         TCGA-RD-A8N1 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-SW-A7EA         TCGA-SW-A7EB         TCGA-VQ-A8DL 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-VQ-A8DT         TCGA-VQ-A8DU         TCGA-VQ-A8E2 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-VQ-A8E7         TCGA-VQ-A8P2         TCGA-VQ-A8P3 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-VQ-A8PE         TCGA-VQ-A8PK         TCGA-VQ-A8PM 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-VQ-A8PQ         TCGA-VQ-A91U         TCGA-VQ-A91V 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-VQ-A92D         TCGA-VQ-AA64         TCGA-VQ-AA69 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-VQ-AA6A         TCGA-VQ-AA6B         TCGA-VQ-AA6F 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-VQ-AA6G         TCGA-VQ-AA6I         TCGA-VQ-AA6K 
"CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" "CDKN2AIP WILD-TYPE" 
        TCGA-ZA-A8F6 
"CDKN2AIP WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2AIP MUTATED        0      0      3      0      0
  CDKN2AIP WILD-TYPE     84     85     82     69     47
D1028V5, multiclass
        clus
vv       CDKN2AIP MUTATED CDKN2AIP WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                0                 85
  CLUS_3                3                 82
  CLUS_4                0                 69
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CDKN2AIP MUTATED        1      0      0      2
  CDKN2AIP WILD-TYPE     94     74    121     78
D1028V6, multiclass
        clus
vv       CDKN2AIP MUTATED CDKN2AIP WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                0                 74
  CLUS_3                0                121
  CLUS_4                2                 78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CDKN2AIP MUTATED        2      0      1      0      0      0
  CDKN2AIP WILD-TYPE     50     64     71    104     40     59
D1028V7, multiclass
        clus
vv       CDKN2AIP MUTATED CDKN2AIP WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                0                 64
  CLUS_3                1                 71
  CLUS_4                0                104
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CDKN2AIP MUTATED        3      0      0
  CDKN2AIP WILD-TYPE    214     75     99
D1028V8, multiclass
        clus
vv       CDKN2AIP MUTATED CDKN2AIP WILD-TYPE
  CLUS_1                3                214
  CLUS_2                0                 75
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  CDKN2AIP MUTATED        1      0      2
  CDKN2AIP WILD-TYPE    120    108     70
D1028V9, multiclass
        clus
vv       CDKN2AIP MUTATED CDKN2AIP WILD-TYPE
  CLUS_1                1                120
  CLUS_2                0                108
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CDKN2AIP MUTATED        1      0      0      0      2
  CDKN2AIP WILD-TYPE     87     66     45     55     45
D1028V10, multiclass
        clus
vv       CDKN2AIP MUTATED CDKN2AIP WILD-TYPE
  CLUS_1                1                 87
  CLUS_2                0                 66
  CLUS_3                0                 45
  CLUS_4                0                 55
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1029) Variable = CLGN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLGN MUTATED        1      8      0      0
  CLGN WILD-TYPE    203    129     47      3
D1029V1, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            1            203
  CLUS_2            8            129
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLGN MUTATED        0      4      0      0      1
  CLGN WILD-TYPE     39     92     44     88     79
D1029V2, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLGN MUTATED        1      5      2      0      1
  CLGN WILD-TYPE     25     74     71     82     57
D1029V3, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            1             25
  CLUS_2            5             74
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLGN MUTATED        2      6      1      0
  CLGN WILD-TYPE    125     45     70     69
D1029V4, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            2            125
  CLUS_2            6             45
  CLUS_3            1             70
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLGN MUTATED        0      3      3      0      1
  CLGN WILD-TYPE     84     82     82     69     46
D1029V5, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            3             82
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLGN MUTATED        1      2      1      3
  CLGN WILD-TYPE     94     72    120     77
D1029V6, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            1             94
  CLUS_2            2             72
  CLUS_3            1            120
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLGN MUTATED        1      5      2      1      0      0
  CLGN WILD-TYPE     51     59     70    103     40     59
D1029V7, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            1             51
  CLUS_2            5             59
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CLGN MUTATED        8      1      0
  CLGN WILD-TYPE    209     74     99
D1029V8, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            8            209
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CLGN MUTATED        1      1      3
  CLGN WILD-TYPE    120    107     69
D1029V9, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            1            120
  CLUS_2            1            107
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLGN MUTATED        0      1      2      0      2
  CLGN WILD-TYPE     88     65     43     55     45
D1029V10, multiclass
        clus
vv       CLGN MUTATED CLGN WILD-TYPE
  CLUS_1            0             88
  CLUS_2            1             65
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1030) Variable = ACAA2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACAA2 MUTATED        1      4      3      0
  ACAA2 WILD-TYPE    203    133     44      3
D1030V1, multiclass
        clus
vv       ACAA2 MUTATED ACAA2 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             4             133
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACAA2 MUTATED        1      5      0      1      0
  ACAA2 WILD-TYPE     38     91     44     87     80
D1030V2, multiclass
        clus
vv       ACAA2 MUTATED ACAA2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACAA2 MUTATED        0      1      3      0      3
  ACAA2 WILD-TYPE     26     78     70     82     55
D1030V3, multiclass
        clus
vv       ACAA2 MUTATED ACAA2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACAA2 MUTATED        1      5      0      1
  ACAA2 WILD-TYPE    126     46     71     68
D1030V4, multiclass
        clus
vv       ACAA2 MUTATED ACAA2 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             5              46
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACAA2 MUTATED        0      0      3      2      2
  ACAA2 WILD-TYPE     84     85     82     67     45
D1030V5, multiclass
        clus
vv       ACAA2 MUTATED ACAA2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ACAA2 MUTATED        2      0      0      5
  ACAA2 WILD-TYPE     93     74    121     75
D1030V6, multiclass
        clus
vv       ACAA2 MUTATED ACAA2 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ACAA2 MUTATED        2      2      3      0      1      0
  ACAA2 WILD-TYPE     50     62     69    104     39     59
D1030V7, multiclass
        clus
vv       ACAA2 MUTATED ACAA2 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             3              69
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACAA2 MUTATED        8      0      0
  ACAA2 WILD-TYPE    209     75     99
D1030V8, multiclass
        clus
vv       ACAA2 MUTATED ACAA2 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ACAA2 MUTATED        5      0      2
  ACAA2 WILD-TYPE    116    108     70
D1030V9, multiclass
        clus
vv       ACAA2 MUTATED ACAA2 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ACAA2 MUTATED        3      0      1      0      3
  ACAA2 WILD-TYPE     85     66     44     55     44
D1030V10, multiclass
        clus
vv       ACAA2 MUTATED ACAA2 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1031) Variable = SLC25A45 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A45 MUTATED        2      7      0      0
  SLC25A45 WILD-TYPE    202    130     47      3
D1031V1, multiclass
        clus
vv       SLC25A45 MUTATED SLC25A45 WILD-TYPE
  CLUS_1                2                202
  CLUS_2                7                130
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC25A45 MUTATED        0      3      2      1      2
  SLC25A45 WILD-TYPE     39     93     42     87     78
D1031V2, multiclass
        clus
vv       SLC25A45 MUTATED SLC25A45 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                3                 93
  CLUS_3                2                 42
  CLUS_4                1                 87
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC25A45 MUTATED        1      2      1      1      1
  SLC25A45 WILD-TYPE     25     77     72     81     57
D1031V3, multiclass
        clus
vv       SLC25A45 MUTATED SLC25A45 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                2                 77
  CLUS_3                1                 72
  CLUS_4                1                 81
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A45 MUTATED        2      3      1      0
  SLC25A45 WILD-TYPE    125     48     70     69
D1031V4, multiclass
        clus
vv       SLC25A45 MUTATED SLC25A45 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                3                 48
  CLUS_3                1                 70
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC25A45 MUTATED        1      0      6      0      1
  SLC25A45 WILD-TYPE     83     85     79     69     46
D1031V5, multiclass
        clus
vv       SLC25A45 MUTATED SLC25A45 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                0                 85
  CLUS_3                6                 79
  CLUS_4                0                 69
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC25A45 MUTATED        1      1      3      3
  SLC25A45 WILD-TYPE     94     73    118     77
D1031V6, multiclass
        clus
vv       SLC25A45 MUTATED SLC25A45 WILD-TYPE
  CLUS_1                1                 94
  CLUS_2                1                 73
  CLUS_3                3                118
  CLUS_4                3                 77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC25A45 MUTATED        2      5      1      0      0      1
  SLC25A45 WILD-TYPE     50     59     71    104     40     58
D1031V7, multiclass
        clus
vv       SLC25A45 MUTATED SLC25A45 WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                5                 59
  CLUS_3                1                 71
  CLUS_4                0                104
  CLUS_5                0                 40
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A45 MUTATED        7      1      1
  SLC25A45 WILD-TYPE    210     74     98
D1031V8, multiclass
        clus
vv       SLC25A45 MUTATED SLC25A45 WILD-TYPE
  CLUS_1                7                210
  CLUS_2                1                 74
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SLC25A45 MUTATED        4      1      3
  SLC25A45 WILD-TYPE    117    107     69
D1031V9, multiclass
        clus
vv       SLC25A45 MUTATED SLC25A45 WILD-TYPE
  CLUS_1                4                117
  CLUS_2                1                107
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC25A45 MUTATED        2      0      3      0      3
  SLC25A45 WILD-TYPE     86     66     42     55     44
D1031V10, multiclass
        clus
vv       SLC25A45 MUTATED SLC25A45 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                0                 66
  CLUS_3                3                 42
  CLUS_4                0                 55
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1032) Variable = TMEFF2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEFF2 MUTATED        3      7      0      0
  TMEFF2 WILD-TYPE    201    130     47      3
D1032V1, multiclass
        clus
vv       TMEFF2 MUTATED TMEFF2 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEFF2 MUTATED        0      5      1      1      2
  TMEFF2 WILD-TYPE     39     91     43     87     78
D1032V2, multiclass
        clus
vv       TMEFF2 MUTATED TMEFF2 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEFF2 MUTATED        1      5      3      1      0
  TMEFF2 WILD-TYPE     25     74     70     81     58
D1032V3, multiclass
        clus
vv       TMEFF2 MUTATED TMEFF2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              5               74
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEFF2 MUTATED        2      4      3      1
  TMEFF2 WILD-TYPE    125     47     68     68
D1032V4, multiclass
        clus
vv       TMEFF2 MUTATED TMEFF2 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              4               47
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEFF2 MUTATED        0      1      8      0      1
  TMEFF2 WILD-TYPE     84     84     77     69     46
D1032V5, multiclass
        clus
vv       TMEFF2 MUTATED TMEFF2 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              8               77
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEFF2 MUTATED        3      1      2      4
  TMEFF2 WILD-TYPE     92     73    119     76
D1032V6, multiclass
        clus
vv       TMEFF2 MUTATED TMEFF2 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEFF2 MUTATED        2      5      2      1      0      0
  TMEFF2 WILD-TYPE     50     59     70    103     40     59
D1032V7, multiclass
        clus
vv       TMEFF2 MUTATED TMEFF2 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              5               59
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEFF2 MUTATED        9      1      0
  TMEFF2 WILD-TYPE    208     74     99
D1032V8, multiclass
        clus
vv       TMEFF2 MUTATED TMEFF2 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TMEFF2 MUTATED        4      0      5
  TMEFF2 WILD-TYPE    117    108     67
D1032V9, multiclass
        clus
vv       TMEFF2 MUTATED TMEFF2 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              0              108
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEFF2 MUTATED        1      0      4      0      4
  TMEFF2 WILD-TYPE     87     66     41     55     43
D1032V10, multiclass
        clus
vv       TMEFF2 MUTATED TMEFF2 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              4               41
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1033) Variable = IFNA17 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA17 MUTATED        2      2      0      0
  IFNA17 WILD-TYPE    202    135     47      3
D1033V1, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              2              135
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFNA17 MUTATED        1      0      0      1      1
  IFNA17 WILD-TYPE     38     96     44     87     79
D1033V2, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              0               96
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFNA17 MUTATED        1      0      1      0      2
  IFNA17 WILD-TYPE     25     79     72     82     56
D1033V3, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              0               79
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA17 MUTATED        3      1      0      0
  IFNA17 WILD-TYPE    124     50     71     69
D1033V4, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              1               50
  CLUS_3              0               71
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFNA17 MUTATED        1      0      2      1      0
  IFNA17 WILD-TYPE     83     85     83     68     47
D1033V5, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               85
  CLUS_3              2               83
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IFNA17 MUTATED        2      0      1      1
  IFNA17 WILD-TYPE     93     74    120     79
D1033V6, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IFNA17 MUTATED        0      2      0      1      1      0
  IFNA17 WILD-TYPE     52     62     72    103     39     59
D1033V7, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNA17 MUTATED        2      0      2
  IFNA17 WILD-TYPE    215     75     97
D1033V8, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              2              215
  CLUS_2              0               75
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  IFNA17 MUTATED        1      0      2
  IFNA17 WILD-TYPE    120    108     70
D1033V9, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              1              120
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IFNA17 MUTATED        0      0      1      1      1
  IFNA17 WILD-TYPE     88     66     44     54     46
D1033V10, multiclass
        clus
vv       IFNA17 MUTATED IFNA17 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1034) Variable = PGBD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGBD1 MUTATED        0     10      4      0
  PGBD1 WILD-TYPE    204    127     43      3
D1034V1, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            10             127
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGBD1 MUTATED        1      6      2      0      1
  PGBD1 WILD-TYPE     38     90     42     88     79
D1034V2, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGBD1 MUTATED        0      4      7      0      2
  PGBD1 WILD-TYPE     26     75     66     82     56
D1034V3, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             7              66
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGBD1 MUTATED        2      8      3      0
  PGBD1 WILD-TYPE    125     43     68     69
D1034V4, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             8              43
  CLUS_3             3              68
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGBD1 MUTATED        1      1      6      1      3
  PGBD1 WILD-TYPE     83     84     79     68     44
D1034V5, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PGBD1 MUTATED        4      1      2      5
  PGBD1 WILD-TYPE     91     73    119     75
D1034V6, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PGBD1 MUTATED        2      6      2      3      1      0
  PGBD1 WILD-TYPE     50     58     70    101     39     59
D1034V7, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             6              58
  CLUS_3             2              70
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PGBD1 MUTATED       12      1      1
  PGBD1 WILD-TYPE    205     74     98
D1034V8, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PGBD1 MUTATED        4      1      4
  PGBD1 WILD-TYPE    117    107     68
D1034V9, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PGBD1 MUTATED        2      1      3      0      3
  PGBD1 WILD-TYPE     86     65     42     55     44
D1034V10, multiclass
        clus
vv       PGBD1 MUTATED PGBD1 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1035) Variable = FCN2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCN2 MUTATED        2      8      0      0
  FCN2 WILD-TYPE    202    129     47      3
D1035V1, multiclass
        clus
vv       FCN2 MUTATED FCN2 WILD-TYPE
  CLUS_1            2            202
  CLUS_2            8            129
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FCN2 MUTATED        1      6      1      1      0
  FCN2 WILD-TYPE     38     90     43     87     80
D1035V2, multiclass
        clus
vv       FCN2 MUTATED FCN2 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            6             90
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FCN2 MUTATED        1      4      3      0      1
  FCN2 WILD-TYPE     25     75     70     82     57
D1035V3, multiclass
        clus
vv       FCN2 MUTATED FCN2 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             75
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCN2 MUTATED        1      5      3      0
  FCN2 WILD-TYPE    126     46     68     69
D1035V4, multiclass
        clus
vv       FCN2 MUTATED FCN2 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            5             46
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FCN2 MUTATED        1      3      4      0      1
  FCN2 WILD-TYPE     83     82     81     69     46
D1035V5, multiclass
        clus
vv       FCN2 MUTATED FCN2 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            3             82
  CLUS_3            4             81
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FCN2 MUTATED        1      1      2      5
  FCN2 WILD-TYPE     94     73    119     75
D1035V6, multiclass
        clus
vv       FCN2 MUTATED FCN2 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FCN2 MUTATED        4      1      2      2      0      1
  FCN2 WILD-TYPE     48     63     70    102     40     58
D1035V7, multiclass
        clus
vv       FCN2 MUTATED FCN2 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            1             63
  CLUS_3            2             70
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FCN2 MUTATED        7      1      2
  FCN2 WILD-TYPE    210     74     97
D1035V8, multiclass
        clus
vv       FCN2 MUTATED FCN2 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  FCN2 MUTATED        4      2      2
  FCN2 WILD-TYPE    117    106     70
D1035V9, multiclass
        clus
vv       FCN2 MUTATED FCN2 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            2            106
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FCN2 MUTATED        3      1      0      1      3
  FCN2 WILD-TYPE     85     65     45     54     44
D1035V10, multiclass
        clus
vv       FCN2 MUTATED FCN2 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1036) Variable = PTPRJ MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRJ MUTATED        6     16      6      0
  PTPRJ WILD-TYPE    198    121     41      3
D1036V1, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             6             198
  CLUS_2            16             121
  CLUS_3             6              41
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPRJ MUTATED        0     13      5      3      2
  PTPRJ WILD-TYPE     39     83     39     85     78
D1036V2, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             0              39
  CLUS_2            13              83
  CLUS_3             5              39
  CLUS_4             3              85
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPRJ MUTATED        3     10      6      1      4
  PTPRJ WILD-TYPE     23     69     67     81     54
D1036V3, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             3              23
  CLUS_2            10              69
  CLUS_3             6              67
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRJ MUTATED        8      9      6      1
  PTPRJ WILD-TYPE    119     42     65     68
D1036V4, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             8             119
  CLUS_2             9              42
  CLUS_3             6              65
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPRJ MUTATED        1      3     13      5      4
  PTPRJ WILD-TYPE     83     82     72     64     43
D1036V5, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3            13              72
  CLUS_4             5              64
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPRJ MUTATED        9      3      5      9
  PTPRJ WILD-TYPE     86     71    116     71
D1036V6, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             9              86
  CLUS_2             3              71
  CLUS_3             5             116
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPRJ MUTATED        5     12      5      4      1      1
  PTPRJ WILD-TYPE     47     52     67    100     39     58
D1036V7, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             5              47
  CLUS_2            12              52
  CLUS_3             5              67
  CLUS_4             4             100
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRJ MUTATED       24      2      2
  PTPRJ WILD-TYPE    193     73     97
D1036V8, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1            24             193
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTPRJ MUTATED        5      3     12
  PTPRJ WILD-TYPE    116    105     60
D1036V9, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             5             116
  CLUS_2             3             105
  CLUS_3            12              60
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPRJ MUTATED        8      1      7      0      4
  PTPRJ WILD-TYPE     80     65     38     55     43
D1036V10, multiclass
        clus
vv       PTPRJ MUTATED PTPRJ WILD-TYPE
  CLUS_1             8              80
  CLUS_2             1              65
  CLUS_3             7              38
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1037) Variable = C11ORF63 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF63 MUTATED        9     10      0      0
  C11ORF63 WILD-TYPE    195    127     47      3
D1037V1, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                9                195
  CLUS_2               10                127
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF63 MUTATED        1     11      2      4      0
  C11ORF63 WILD-TYPE     38     85     42     84     80
D1037V2, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2               11                 85
  CLUS_3                2                 42
  CLUS_4                4                 84
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF63 MUTATED        1      5      6      2      3
  C11ORF63 WILD-TYPE     25     74     67     80     55
D1037V3, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                5                 74
  CLUS_3                6                 67
  CLUS_4                2                 80
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF63 MUTATED        4      8      3      2
  C11ORF63 WILD-TYPE    123     43     68     67
D1037V4, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                4                123
  CLUS_2                8                 43
  CLUS_3                3                 68
  CLUS_4                2                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF63 MUTATED        2      4      8      2      4
  C11ORF63 WILD-TYPE     82     81     77     67     43
D1037V5, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                2                 82
  CLUS_2                4                 81
  CLUS_3                8                 77
  CLUS_4                2                 67
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C11ORF63 MUTATED        4      2      3     11
  C11ORF63 WILD-TYPE     91     72    118     69
D1037V6, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                4                 91
  CLUS_2                2                 72
  CLUS_3                3                118
  CLUS_4               11                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C11ORF63 MUTATED        6      6      4      2      1      1
  C11ORF63 WILD-TYPE     46     58     68    102     39     58
D1037V7, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                6                 46
  CLUS_2                6                 58
  CLUS_3                4                 68
  CLUS_4                2                102
  CLUS_5                1                 39
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF63 MUTATED       17      1      2
  C11ORF63 WILD-TYPE    200     74     97
D1037V8, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1               17                200
  CLUS_2                1                 74
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C11ORF63 MUTATED       10      0      6
  C11ORF63 WILD-TYPE    111    108     66
D1037V9, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1               10                111
  CLUS_2                0                108
  CLUS_3                6                 66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C11ORF63 MUTATED        5      0      4      1      6
  C11ORF63 WILD-TYPE     83     66     41     54     41
D1037V10, multiclass
        clus
vv       C11ORF63 MUTATED C11ORF63 WILD-TYPE
  CLUS_1                5                 83
  CLUS_2                0                 66
  CLUS_3                4                 41
  CLUS_4                1                 54
  CLUS_5                6                 41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1038) Variable = HSF4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSF4 MUTATED        0      8      0      0
  HSF4 WILD-TYPE    204    129     47      3
D1038V1, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            8            129
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSF4 MUTATED        0      6      2      0      0
  HSF4 WILD-TYPE     39     90     42     88     80
D1038V2, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            6             90
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSF4 MUTATED        0      5      2      0      1
  HSF4 WILD-TYPE     26     74     71     82     57
D1038V3, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            5             74
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSF4 MUTATED        0      4      3      1
  HSF4 WILD-TYPE    127     47     68     68
D1038V4, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            4             47
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSF4 MUTATED        0      2      4      0      1
  HSF4 WILD-TYPE     84     83     81     69     46
D1038V5, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            4             81
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HSF4 MUTATED        1      2      0      4
  HSF4 WILD-TYPE     94     72    121     76
D1038V6, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HSF4 MUTATED        3      3      0      2      0      0
  HSF4 WILD-TYPE     49     61     72    102     40     59
D1038V7, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            3             61
  CLUS_3            0             72
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF4 MUTATED        7      1      0
  HSF4 WILD-TYPE    210     74     99
D1038V8, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HSF4 MUTATED        3      2      3
  HSF4 WILD-TYPE    118    106     69
D1038V9, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            2            106
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HSF4 MUTATED        3      1      2      0      2
  HSF4 WILD-TYPE     85     65     43     55     45
D1038V10, multiclass
        clus
vv       HSF4 MUTATED HSF4 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1039) Variable = CNPY4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNPY4 MUTATED        2      1      1      0
  CNPY4 WILD-TYPE    202    136     46      3
D1039V1, multiclass
        clus
vv       CNPY4 MUTATED CNPY4 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             1             136
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNPY4 MUTATED        1      0      0      1      0
  CNPY4 WILD-TYPE     38     96     44     87     80
D1039V2, multiclass
[1] "Remove cluster labels:" "CNPY4 MUTATED"         
clus
  CNPY4 MUTATED CNPY4 WILD-TYPE 
              2             345 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8060 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8081 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8486      TCGA-BR-8487 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A4J4      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-A4MJ      TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-5716 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2      TCGA-D7-A747 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B      TCGA-EQ-5647 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7735 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-FP-A4BE      TCGA-FP-A4BF      TCGA-FP-A8CX      TCGA-FP-A9TM 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8238 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-8243      TCGA-HU-8244      TCGA-HU-8249      TCGA-HU-8602 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4G2 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-A4G3      TCGA-HU-A4G6      TCGA-HU-A4G8      TCGA-HU-A4G9 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-A4GJ      TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-A4GT      TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-A4H0      TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-A4HD      TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-IN-8663      TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-IN-A6RN      TCGA-IN-A6RO      TCGA-IN-A6RP      TCGA-IN-A6RR 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-KB-A6F7      TCGA-KB-A93G      TCGA-KB-A93J      TCGA-MX-A5UG 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-MX-A5UJ      TCGA-MX-A663      TCGA-MX-A666      TCGA-R5-A7O7 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-R5-A7ZE      TCGA-R5-A7ZF      TCGA-R5-A7ZI      TCGA-R5-A7ZR 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-R5-A804      TCGA-R5-A805      TCGA-RD-A7BS      TCGA-RD-A7BT 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV      TCGA-RD-A8MW 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N2      TCGA-RD-A8N4 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-RD-A8N5      TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-A8DV      TCGA-VQ-A8DZ      TCGA-VQ-A8E2      TCGA-VQ-A8P2 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-A8P3      TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-A8PQ      TCGA-VQ-A91Q      TCGA-VQ-A91U      TCGA-VQ-A91V 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-A92D      TCGA-VQ-A94T      TCGA-VQ-AA64      TCGA-VQ-AA68 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6J      TCGA-VQ-AA6K 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-ZA-A8F6 
"CNPY4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNPY4 MUTATED        1      0      2      0      1
  CNPY4 WILD-TYPE     25     79     71     82     57
D1039V3, multiclass
        clus
vv       CNPY4 MUTATED CNPY4 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             0              79
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNPY4 MUTATED        4      0      0      0
  CNPY4 WILD-TYPE    123     51     71     69
D1039V4, multiclass
        clus
vv       CNPY4 MUTATED CNPY4 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             0              51
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNPY4 MUTATED        2      0      0      1      1
  CNPY4 WILD-TYPE     82     85     85     68     46
D1039V5, multiclass
        clus
vv       CNPY4 MUTATED CNPY4 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             0              85
  CLUS_3             0              85
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNPY4 MUTATED        1      0      2      1
  CNPY4 WILD-TYPE     94     74    119     79
D1039V6, multiclass
        clus
vv       CNPY4 MUTATED CNPY4 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             2             119
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNPY4 MUTATED        1      2      0      0      0      1
  CNPY4 WILD-TYPE     51     62     72    104     40     58
D1039V7, multiclass
        clus
vv       CNPY4 MUTATED CNPY4 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             2              62
  CLUS_3             0              72
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNPY4 MUTATED        2      0      2
  CNPY4 WILD-TYPE    215     75     97
D1039V8, multiclass
        clus
vv       CNPY4 MUTATED CNPY4 WILD-TYPE
  CLUS_1             2             215
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNPY4 MUTATED        2      0      0
  CNPY4 WILD-TYPE    119    108     72
D1039V9, multiclass
[1] "Remove cluster labels:" "CNPY4 MUTATED"         
clus
  CNPY4 MUTATED CNPY4 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8486 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-FP-A9TM      TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-A4GJ      TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-IN-A6RP      TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-KB-A6F7      TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-MX-A663      TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-R5-A7ZF      TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-R5-A805      TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-RD-A8MV      TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-RD-A8N5      TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-A8E2      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNPY4 MUTATED        1      0      0      1      0
  CNPY4 WILD-TYPE     87     66     45     54     47
D1039V10, multiclass
[1] "Remove cluster labels:" "CNPY4 MUTATED"         
clus
  CNPY4 MUTATED CNPY4 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8486 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-FP-A9TM      TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-8604      TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-A4GC      TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-A4GJ      TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-HU-A4H5      TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-IN-A6RP      TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-KB-A6F7      TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-MX-A663      TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-R5-A7ZF      TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-R5-A805      TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-RD-A8MV      TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-RD-A8N5      TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-A8E2      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" "CNPY4 WILD-TYPE" 

Clustering(1040) Variable = FAM167A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM167A MUTATED        0      7      1      0
  FAM167A WILD-TYPE    204    130     46      3
D1040V1, multiclass
        clus
vv       FAM167A MUTATED FAM167A WILD-TYPE
  CLUS_1               0               204
  CLUS_2               7               130
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM167A MUTATED        0      6      1      0      0
  FAM167A WILD-TYPE     39     90     43     88     80
D1040V2, multiclass
        clus
vv       FAM167A MUTATED FAM167A WILD-TYPE
  CLUS_1               0                39
  CLUS_2               6                90
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM167A MUTATED        0      2      4      0      1
  FAM167A WILD-TYPE     26     77     69     82     57
D1040V3, multiclass
        clus
vv       FAM167A MUTATED FAM167A WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               4                69
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM167A MUTATED        1      5      1      0
  FAM167A WILD-TYPE    126     46     70     69
D1040V4, multiclass
        clus
vv       FAM167A MUTATED FAM167A WILD-TYPE
  CLUS_1               1               126
  CLUS_2               5                46
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM167A MUTATED        0      2      3      0      2
  FAM167A WILD-TYPE     84     83     82     69     45
D1040V5, multiclass
        clus
vv       FAM167A MUTATED FAM167A WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3               3                82
  CLUS_4               0                69
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM167A MUTATED        3      0      0      4
  FAM167A WILD-TYPE     92     74    121     76
D1040V6, multiclass
        clus
vv       FAM167A MUTATED FAM167A WILD-TYPE
  CLUS_1               3                92
  CLUS_2               0                74
  CLUS_3               0               121
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM167A MUTATED        2      2      3      0      1      0
  FAM167A WILD-TYPE     50     62     69    104     39     59
D1040V7, multiclass
        clus
vv       FAM167A MUTATED FAM167A WILD-TYPE
  CLUS_1               2                50
  CLUS_2               2                62
  CLUS_3               3                69
  CLUS_4               0               104
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM167A MUTATED        7      0      1
  FAM167A WILD-TYPE    210     75     98
D1040V8, multiclass
        clus
vv       FAM167A MUTATED FAM167A WILD-TYPE
  CLUS_1               7               210
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  FAM167A MUTATED        2      1      3
  FAM167A WILD-TYPE    119    107     69
D1040V9, multiclass
        clus
vv       FAM167A MUTATED FAM167A WILD-TYPE
  CLUS_1               2               119
  CLUS_2               1               107
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM167A MUTATED        1      0      1      0      4
  FAM167A WILD-TYPE     87     66     44     55     43
D1040V10, multiclass
        clus
vv       FAM167A MUTATED FAM167A WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1041) Variable = DMC1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMC1 MUTATED        2      5      0      0
  DMC1 WILD-TYPE    202    132     47      3
D1041V1, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            2            202
  CLUS_2            5            132
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DMC1 MUTATED        0      5      1      0      1
  DMC1 WILD-TYPE     39     91     43     88     79
D1041V2, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            5             91
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DMC1 MUTATED        2      1      2      1      1
  DMC1 WILD-TYPE     24     78     71     81     57
D1041V3, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            1             78
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMC1 MUTATED        3      1      1      2
  DMC1 WILD-TYPE    124     50     70     67
D1041V4, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            1             50
  CLUS_3            1             70
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DMC1 MUTATED        0      3      4      0      1
  DMC1 WILD-TYPE     84     82     81     69     46
D1041V5, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            3             82
  CLUS_3            4             81
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DMC1 MUTATED        1      3      1      3
  DMC1 WILD-TYPE     94     71    120     77
D1041V6, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            3             71
  CLUS_3            1            120
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DMC1 MUTATED        2      3      1      2      0      0
  DMC1 WILD-TYPE     50     61     71    102     40     59
D1041V7, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            3             61
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DMC1 MUTATED        7      1      0
  DMC1 WILD-TYPE    210     74     99
D1041V8, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DMC1 MUTATED        2      1      3
  DMC1 WILD-TYPE    119    107     69
D1041V9, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            1            107
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DMC1 MUTATED        3      0      1      0      2
  DMC1 WILD-TYPE     85     66     44     55     45
D1041V10, multiclass
        clus
vv       DMC1 MUTATED DMC1 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1042) Variable = DENND4C MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DENND4C MUTATED        4     11      1      0
  DENND4C WILD-TYPE    200    126     46      3
D1042V1, multiclass
        clus
vv       DENND4C MUTATED DENND4C WILD-TYPE
  CLUS_1               4               200
  CLUS_2              11               126
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DENND4C MUTATED        1      8      2      2      0
  DENND4C WILD-TYPE     38     88     42     86     80
D1042V2, multiclass
        clus
vv       DENND4C MUTATED DENND4C WILD-TYPE
  CLUS_1               1                38
  CLUS_2               8                88
  CLUS_3               2                42
  CLUS_4               2                86
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DENND4C MUTATED        1      6      3      0      2
  DENND4C WILD-TYPE     25     73     70     82     56
D1042V3, multiclass
        clus
vv       DENND4C MUTATED DENND4C WILD-TYPE
  CLUS_1               1                25
  CLUS_2               6                73
  CLUS_3               3                70
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DENND4C MUTATED        3      6      3      0
  DENND4C WILD-TYPE    124     45     68     69
D1042V4, multiclass
        clus
vv       DENND4C MUTATED DENND4C WILD-TYPE
  CLUS_1               3               124
  CLUS_2               6                45
  CLUS_3               3                68
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DENND4C MUTATED        3      2      7      2      0
  DENND4C WILD-TYPE     81     83     78     67     47
D1042V5, multiclass
        clus
vv       DENND4C MUTATED DENND4C WILD-TYPE
  CLUS_1               3                81
  CLUS_2               2                83
  CLUS_3               7                78
  CLUS_4               2                67
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DENND4C MUTATED        5      0      4      5
  DENND4C WILD-TYPE     90     74    117     75
D1042V6, multiclass
        clus
vv       DENND4C MUTATED DENND4C WILD-TYPE
  CLUS_1               5                90
  CLUS_2               0                74
  CLUS_3               4               117
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DENND4C MUTATED        4      4      2      1      2      3
  DENND4C WILD-TYPE     48     60     70    103     38     56
D1042V7, multiclass
        clus
vv       DENND4C MUTATED DENND4C WILD-TYPE
  CLUS_1               4                48
  CLUS_2               4                60
  CLUS_3               2                70
  CLUS_4               1               103
  CLUS_5               2                38
  CLUS_6               3                56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DENND4C MUTATED       11      1      4
  DENND4C WILD-TYPE    206     74     95
D1042V8, multiclass
        clus
vv       DENND4C MUTATED DENND4C WILD-TYPE
  CLUS_1              11               206
  CLUS_2               1                74
  CLUS_3               4                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  DENND4C MUTATED        4      1      5
  DENND4C WILD-TYPE    117    107     67
D1042V9, multiclass
        clus
vv       DENND4C MUTATED DENND4C WILD-TYPE
  CLUS_1               4               117
  CLUS_2               1               107
  CLUS_3               5                67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DENND4C MUTATED        4      1      2      2      1
  DENND4C WILD-TYPE     84     65     43     53     46
D1042V10, multiclass
        clus
vv       DENND4C MUTATED DENND4C WILD-TYPE
  CLUS_1               4                84
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               2                53
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1043) Variable = DEK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEK MUTATED        2      4      2      0
  DEK WILD-TYPE    202    133     45      3
D1043V1, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           2           202
  CLUS_2           4           133
  CLUS_3           2            45
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEK MUTATED        4      2      0      1      1
  DEK WILD-TYPE     35     94     44     87     79
D1043V2, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           4            35
  CLUS_2           2            94
  CLUS_3           0            44
  CLUS_4           1            87
  CLUS_5           1            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEK MUTATED        1      1      3      0      3
  DEK WILD-TYPE     25     78     70     82     55
D1043V3, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           1            25
  CLUS_2           1            78
  CLUS_3           3            70
  CLUS_4           0            82
  CLUS_5           3            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEK MUTATED        2      5      1      0
  DEK WILD-TYPE    125     46     70     69
D1043V4, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           2           125
  CLUS_2           5            46
  CLUS_3           1            70
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEK MUTATED        1      0      5      1      0
  DEK WILD-TYPE     83     85     80     68     47
D1043V5, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           1            83
  CLUS_2           0            85
  CLUS_3           5            80
  CLUS_4           1            68
  CLUS_5           0            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEK MUTATED        1      0      2      4
  DEK WILD-TYPE     94     74    119     76
D1043V6, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           1            94
  CLUS_2           0            74
  CLUS_3           2           119
  CLUS_4           4            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEK MUTATED        3      2      1      1      1      0
  DEK WILD-TYPE     49     62     71    103     39     59
D1043V7, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           3            49
  CLUS_2           2            62
  CLUS_3           1            71
  CLUS_4           1           103
  CLUS_5           1            39
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        6      1      1
  DEK WILD-TYPE    211     74     98
D1043V8, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           6           211
  CLUS_2           1            74
  CLUS_3           1            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  DEK MUTATED        4      0      2
  DEK WILD-TYPE    117    108     70
D1043V9, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           4           117
  CLUS_2           0           108
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEK MUTATED        2      0      2      0      2
  DEK WILD-TYPE     86     66     43     55     45
D1043V10, multiclass
        clus
vv       DEK MUTATED DEK WILD-TYPE
  CLUS_1           2            86
  CLUS_2           0            66
  CLUS_3           2            43
  CLUS_4           0            55
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1044) Variable = SP140 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP140 MUTATED        7      7      2      0
  SP140 WILD-TYPE    197    130     45      3
D1044V1, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             7             197
  CLUS_2             7             130
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SP140 MUTATED        0      5      1      6      1
  SP140 WILD-TYPE     39     91     43     82     79
D1044V2, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             6              82
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SP140 MUTATED        1      2      7      1      2
  SP140 WILD-TYPE     25     77     66     81     56
D1044V3, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             7              66
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP140 MUTATED        5      5      2      1
  SP140 WILD-TYPE    122     46     69     68
D1044V4, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SP140 MUTATED        3      2      5      2      3
  SP140 WILD-TYPE     81     83     80     67     44
D1044V5, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             2              67
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SP140 MUTATED        4      0      4      7
  SP140 WILD-TYPE     91     74    117     73
D1044V6, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             0              74
  CLUS_3             4             117
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SP140 MUTATED        6      3      2      0      1      4
  SP140 WILD-TYPE     46     61     70    104     39     55
D1044V7, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             3              61
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             4              55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP140 MUTATED       10      0      6
  SP140 WILD-TYPE    207     75     93
D1044V8, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             0              75
  CLUS_3             6              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SP140 MUTATED       10      0      3
  SP140 WILD-TYPE    111    108     69
D1044V9, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1            10             111
  CLUS_2             0             108
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SP140 MUTATED        2      0      2      2      7
  SP140 WILD-TYPE     86     66     43     53     40
D1044V10, multiclass
        clus
vv       SP140 MUTATED SP140 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             2              53
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1045) Variable = EGR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGR1 MUTATED        0     11      1      0
  EGR1 WILD-TYPE    204    126     46      3
D1045V1, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            0            204
  CLUS_2           11            126
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGR1 MUTATED        1      7      1      0      1
  EGR1 WILD-TYPE     38     89     43     88     79
D1045V2, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            7             89
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGR1 MUTATED        0      3      4      0      2
  EGR1 WILD-TYPE     26     76     69     82     56
D1045V3, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            3             76
  CLUS_3            4             69
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGR1 MUTATED        2      5      2      0
  EGR1 WILD-TYPE    125     46     69     69
D1045V4, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            5             46
  CLUS_3            2             69
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGR1 MUTATED        0      2      6      1      3
  EGR1 WILD-TYPE     84     83     79     68     44
D1045V5, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            6             79
  CLUS_4            1             68
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGR1 MUTATED        4      1      1      6
  EGR1 WILD-TYPE     91     73    120     74
D1045V6, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            6             74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EGR1 MUTATED        3      6      1      1      1      0
  EGR1 WILD-TYPE     49     58     71    103     39     59
D1045V7, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            6             58
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        7      2      3
  EGR1 WILD-TYPE    210     73     96
D1045V8, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            2             73
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGR1 MUTATED        3      2      4
  EGR1 WILD-TYPE    118    106     68
D1045V9, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            2            106
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGR1 MUTATED        2      1      2      0      4
  EGR1 WILD-TYPE     86     65     43     55     43
D1045V10, multiclass
        clus
vv       EGR1 MUTATED EGR1 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            1             65
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1046) Variable = PKD2L2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKD2L2 MUTATED        1      8      1      0
  PKD2L2 WILD-TYPE    203    129     46      3
D1046V1, multiclass
        clus
vv       PKD2L2 MUTATED PKD2L2 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              8              129
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PKD2L2 MUTATED        1      4      0      3      1
  PKD2L2 WILD-TYPE     38     92     44     85     79
D1046V2, multiclass
        clus
vv       PKD2L2 MUTATED PKD2L2 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               92
  CLUS_3              0               44
  CLUS_4              3               85
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PKD2L2 MUTATED        1      1      2      0      3
  PKD2L2 WILD-TYPE     25     78     71     82     55
D1046V3, multiclass
        clus
vv       PKD2L2 MUTATED PKD2L2 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKD2L2 MUTATED        2      3      1      1
  PKD2L2 WILD-TYPE    125     48     70     68
D1046V4, multiclass
        clus
vv       PKD2L2 MUTATED PKD2L2 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              3               48
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PKD2L2 MUTATED        1      0      6      1      1
  PKD2L2 WILD-TYPE     83     85     79     68     46
D1046V5, multiclass
        clus
vv       PKD2L2 MUTATED PKD2L2 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               85
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PKD2L2 MUTATED        1      0      2      6
  PKD2L2 WILD-TYPE     94     74    119     74
D1046V6, multiclass
        clus
vv       PKD2L2 MUTATED PKD2L2 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              0               74
  CLUS_3              2              119
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PKD2L2 MUTATED        4      2      2      1      0      1
  PKD2L2 WILD-TYPE     48     62     70    103     40     58
D1046V7, multiclass
        clus
vv       PKD2L2 MUTATED PKD2L2 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              2               62
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PKD2L2 MUTATED        9      0      1
  PKD2L2 WILD-TYPE    208     75     98
D1046V8, multiclass
        clus
vv       PKD2L2 MUTATED PKD2L2 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PKD2L2 MUTATED        5      1      3
  PKD2L2 WILD-TYPE    116    107     69
D1046V9, multiclass
        clus
vv       PKD2L2 MUTATED PKD2L2 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PKD2L2 MUTATED        2      0      2      1      4
  PKD2L2 WILD-TYPE     86     66     43     54     43
D1046V10, multiclass
        clus
vv       PKD2L2 MUTATED PKD2L2 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              1               54
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1047) Variable = FGF13 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGF13 MUTATED        3     11      1      0
  FGF13 WILD-TYPE    201    126     46      3
D1047V1, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             3             201
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF13 MUTATED        1      5      4      2      1
  FGF13 WILD-TYPE     38     91     40     86     79
D1047V2, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             4              40
  CLUS_4             2              86
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF13 MUTATED        2      4      3      2      1
  FGF13 WILD-TYPE     24     75     70     80     57
D1047V3, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             4              75
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGF13 MUTATED        4      4      3      1
  FGF13 WILD-TYPE    123     47     68     68
D1047V4, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             4              47
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF13 MUTATED        1      2      8      1      3
  FGF13 WILD-TYPE     83     83     77     68     44
D1047V5, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             8              77
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGF13 MUTATED        4      2      3      6
  FGF13 WILD-TYPE     91     72    118     74
D1047V6, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             3             118
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FGF13 MUTATED        4      6      1      0      1      3
  FGF13 WILD-TYPE     48     58     71    104     39     56
D1047V7, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             6              58
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             3              56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF13 MUTATED       11      1      3
  FGF13 WILD-TYPE    206     74     96
D1047V8, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1            11             206
  CLUS_2             1              74
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF13 MUTATED        7      2      3
  FGF13 WILD-TYPE    114    106     69
D1047V9, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             7             114
  CLUS_2             2             106
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF13 MUTATED        4      0      3      2      3
  FGF13 WILD-TYPE     84     66     42     53     44
D1047V10, multiclass
        clus
vv       FGF13 MUTATED FGF13 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             2              53
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1048) Variable = MAP4K5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K5 MUTATED        0      4      0      0
  MAP4K5 WILD-TYPE    204    133     47      3
D1048V1, multiclass
        clus
vv       MAP4K5 MUTATED MAP4K5 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              4              133
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP4K5 MUTATED        0      2      1      0      0
  MAP4K5 WILD-TYPE     39     94     43     88     80
D1048V2, multiclass
        clus
vv       MAP4K5 MUTATED MAP4K5 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              2               94
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP4K5 MUTATED        0      2      1      0      1
  MAP4K5 WILD-TYPE     26     77     72     82     57
D1048V3, multiclass
        clus
vv       MAP4K5 MUTATED MAP4K5 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K5 MUTATED        0      3      1      0
  MAP4K5 WILD-TYPE    127     48     70     69
D1048V4, multiclass
        clus
vv       MAP4K5 MUTATED MAP4K5 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              3               48
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP4K5 MUTATED        0      0      3      0      0
  MAP4K5 WILD-TYPE     84     85     82     69     47
D1048V5, multiclass
        clus
vv       MAP4K5 MUTATED MAP4K5 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP4K5 MUTATED        1      0      1      1
  MAP4K5 WILD-TYPE     94     74    120     79
D1048V6, multiclass
        clus
vv       MAP4K5 MUTATED MAP4K5 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP4K5 MUTATED        0      3      1      0      0      0
  MAP4K5 WILD-TYPE     52     61     71    104     40     59
D1048V7, multiclass
        clus
vv       MAP4K5 MUTATED MAP4K5 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP4K5 MUTATED        4      0      0
  MAP4K5 WILD-TYPE    213     75     99
D1048V8, multiclass
        clus
vv       MAP4K5 MUTATED MAP4K5 WILD-TYPE
  CLUS_1              4              213
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  MAP4K5 MUTATED        0      0      2
  MAP4K5 WILD-TYPE    121    108     70
D1048V9, multiclass
[1] "Remove cluster labels:" "MAP4K5 MUTATED"        
clus
  MAP4K5 MUTATED MAP4K5 WILD-TYPE 
               2              299 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-6453       TCGA-BR-6454 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6709 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7717 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8060       TCGA-BR-8077       TCGA-BR-8078       TCGA-BR-8080 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360       TCGA-BR-8361 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8368 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8485       TCGA-BR-8486 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8590       TCGA-BR-8591 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A452 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-A4J1       TCGA-BR-A4J5       TCGA-BR-A4J6       TCGA-BR-A4J7 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI       TCGA-BR-A4QL 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534       TCGA-CD-8535 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5716 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5734       TCGA-D7-5577 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8574 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-8575       TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-A4YT       TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YY 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-D7-A6ET       TCGA-D7-A6EV       TCGA-D7-A6EX 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-A6EY       TCGA-D7-A6EZ       TCGA-D7-A6F0       TCGA-D7-A6F2 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-A747       TCGA-D7-A748       TCGA-D7-A74A       TCGA-D7-A74B 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177       TCGA-F1-6874 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE       TCGA-FP-A9TM 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-HF-7131       TCGA-HF-7132       TCGA-HF-7134       TCGA-HF-7136 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-HU-8238       TCGA-HU-8243       TCGA-HU-8602       TCGA-HU-8604 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8       TCGA-HU-A4GC 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GJ 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GX 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H4       TCGA-HU-A4H5 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-HU-A4H6       TCGA-HU-A4H8       TCGA-HU-A4HB       TCGA-IN-7806 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663       TCGA-IN-A6RI 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-IN-A6RJ       TCGA-IN-A6RL       TCGA-IN-A6RN       TCGA-IN-A6RP 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-IN-A7NR       TCGA-IN-A7NT       TCGA-IN-A7NU       TCGA-IN-AB1V 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-IN-AB1X       TCGA-IP-7968       TCGA-KB-A6F5       TCGA-KB-A6F7 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-KB-A93J       TCGA-MX-A5UG       TCGA-MX-A5UJ       TCGA-MX-A663 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-MX-A666       TCGA-R5-A7O7       TCGA-R5-A7ZE       TCGA-R5-A7ZF 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-R5-A7ZI       TCGA-R5-A7ZR       TCGA-R5-A804       TCGA-R5-A805 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-RD-A7BS       TCGA-RD-A7BW       TCGA-RD-A7C1       TCGA-RD-A8MV 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1       TCGA-RD-A8N5 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA       TCGA-SW-A7EB 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-VQ-A8DL       TCGA-VQ-A8DU       TCGA-VQ-A8DV       TCGA-VQ-A8E2 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-VQ-A8E7       TCGA-VQ-A8P2       TCGA-VQ-A8P3       TCGA-VQ-A8PE 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ       TCGA-VQ-A91Q 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D       TCGA-VQ-A94T 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-VQ-AA64       TCGA-VQ-AA68       TCGA-VQ-AA69       TCGA-VQ-AA6A 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-VQ-AA6B       TCGA-VQ-AA6F       TCGA-VQ-AA6G       TCGA-VQ-AA6I 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-VQ-AA6J       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP4K5 MUTATED        0      0      2      0      0
  MAP4K5 WILD-TYPE     88     66     43     55     47
D1048V10, multiclass
[1] "Remove cluster labels:" "MAP4K5 MUTATED"        
clus
  MAP4K5 MUTATED MAP4K5 WILD-TYPE 
               2              299 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-6453       TCGA-BR-6454 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457       TCGA-BR-6458 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565       TCGA-BR-6566 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707       TCGA-BR-6709 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802       TCGA-BR-6803 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197       TCGA-BR-7703 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715       TCGA-BR-7717 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8060       TCGA-BR-8077       TCGA-BR-8078       TCGA-BR-8080 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289       TCGA-BR-8291 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360       TCGA-BR-8361 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365       TCGA-BR-8368 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8485       TCGA-BR-8486 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8590       TCGA-BR-8591 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677       TCGA-BR-8678 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682       TCGA-BR-8683 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T       TCGA-BR-A452 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-A4J1       TCGA-BR-A4J5       TCGA-BR-A4J6       TCGA-BR-A4J7 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI       TCGA-BR-A4QL 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534       TCGA-CD-8535 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5716 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5734       TCGA-D7-5577 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518       TCGA-D7-6519 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522       TCGA-D7-6524 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527       TCGA-D7-6528 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818       TCGA-D7-6820 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572       TCGA-D7-8574 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-8575       TCGA-D7-8576       TCGA-D7-8578       TCGA-D7-8579 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-A4YT       TCGA-D7-A4YU       TCGA-D7-A4YV       TCGA-D7-A4YY 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-A4Z0       TCGA-D7-A6ET       TCGA-D7-A6EV       TCGA-D7-A6EX 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-A6EY       TCGA-D7-A6EZ       TCGA-D7-A6F0       TCGA-D7-A6F2 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-D7-A747       TCGA-D7-A748       TCGA-D7-A74A       TCGA-D7-A74B 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177       TCGA-F1-6874 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735       TCGA-FP-7829 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209       TCGA-FP-8210 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE       TCGA-FP-A9TM 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-HF-7131       TCGA-HF-7132       TCGA-HF-7134       TCGA-HF-7136 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-HU-8238       TCGA-HU-8243       TCGA-HU-8602       TCGA-HU-8604 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8       TCGA-HU-A4GC 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH       TCGA-HU-A4GJ 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-HU-A4GN       TCGA-HU-A4GQ       TCGA-HU-A4GT       TCGA-HU-A4GX 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H4       TCGA-HU-A4H5 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-HU-A4H6       TCGA-HU-A4H8       TCGA-HU-A4HB       TCGA-IN-7806 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663       TCGA-IN-A6RI 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-IN-A6RJ       TCGA-IN-A6RL       TCGA-IN-A6RN       TCGA-IN-A6RP 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-IN-A7NR       TCGA-IN-A7NT       TCGA-IN-A7NU       TCGA-IN-AB1V 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-IN-AB1X       TCGA-IP-7968       TCGA-KB-A6F5       TCGA-KB-A6F7 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-KB-A93J       TCGA-MX-A5UG       TCGA-MX-A5UJ       TCGA-MX-A663 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-MX-A666       TCGA-R5-A7O7       TCGA-R5-A7ZE       TCGA-R5-A7ZF 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-R5-A7ZI       TCGA-R5-A7ZR       TCGA-R5-A804       TCGA-R5-A805 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-RD-A7BS       TCGA-RD-A7BW       TCGA-RD-A7C1       TCGA-RD-A8MV 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1       TCGA-RD-A8N5 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA       TCGA-SW-A7EB 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-VQ-A8DL       TCGA-VQ-A8DU       TCGA-VQ-A8DV       TCGA-VQ-A8E2 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-VQ-A8E7       TCGA-VQ-A8P2       TCGA-VQ-A8P3       TCGA-VQ-A8PE 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ       TCGA-VQ-A91Q 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D       TCGA-VQ-A94T 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-VQ-AA64       TCGA-VQ-AA68       TCGA-VQ-AA69       TCGA-VQ-AA6A 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-VQ-AA6B       TCGA-VQ-AA6F       TCGA-VQ-AA6G       TCGA-VQ-AA6I 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 
      TCGA-VQ-AA6J       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" "MAP4K5 WILD-TYPE" 

Clustering(1049) Variable = ARID5B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID5B MUTATED        5      9      1      0
  ARID5B WILD-TYPE    199    128     46      3
D1049V1, multiclass
        clus
vv       ARID5B MUTATED ARID5B WILD-TYPE
  CLUS_1              5              199
  CLUS_2              9              128
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID5B MUTATED        1      6      2      1      1
  ARID5B WILD-TYPE     38     90     42     87     79
D1049V2, multiclass
        clus
vv       ARID5B MUTATED ARID5B WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               90
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID5B MUTATED        1      6      5      0      3
  ARID5B WILD-TYPE     25     73     68     82     55
D1049V3, multiclass
        clus
vv       ARID5B MUTATED ARID5B WILD-TYPE
  CLUS_1              1               25
  CLUS_2              6               73
  CLUS_3              5               68
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID5B MUTATED        6      6      3      0
  ARID5B WILD-TYPE    121     45     68     69
D1049V4, multiclass
        clus
vv       ARID5B MUTATED ARID5B WILD-TYPE
  CLUS_1              6              121
  CLUS_2              6               45
  CLUS_3              3               68
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID5B MUTATED        2      3      7      1      2
  ARID5B WILD-TYPE     82     82     78     68     45
D1049V5, multiclass
        clus
vv       ARID5B MUTATED ARID5B WILD-TYPE
  CLUS_1              2               82
  CLUS_2              3               82
  CLUS_3              7               78
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARID5B MUTATED        3      3      2      7
  ARID5B WILD-TYPE     92     71    119     73
D1049V6, multiclass
        clus
vv       ARID5B MUTATED ARID5B WILD-TYPE
  CLUS_1              3               92
  CLUS_2              3               71
  CLUS_3              2              119
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARID5B MUTATED        2      5      2      3      1      2
  ARID5B WILD-TYPE     50     59     70    101     39     57
D1049V7, multiclass
        clus
vv       ARID5B MUTATED ARID5B WILD-TYPE
  CLUS_1              2               50
  CLUS_2              5               59
  CLUS_3              2               70
  CLUS_4              3              101
  CLUS_5              1               39
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID5B MUTATED       13      0      2
  ARID5B WILD-TYPE    204     75     97
D1049V8, multiclass
        clus
vv       ARID5B MUTATED ARID5B WILD-TYPE
  CLUS_1             13              204
  CLUS_2              0               75
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARID5B MUTATED        5      1      4
  ARID5B WILD-TYPE    116    107     68
D1049V9, multiclass
        clus
vv       ARID5B MUTATED ARID5B WILD-TYPE
  CLUS_1              5              116
  CLUS_2              1              107
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARID5B MUTATED        4      0      2      0      4
  ARID5B WILD-TYPE     84     66     43     55     43
D1049V10, multiclass
        clus
vv       ARID5B MUTATED ARID5B WILD-TYPE
  CLUS_1              4               84
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1050) Variable = CCDC92 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC92 MUTATED        1      4      1      0
  CCDC92 WILD-TYPE    203    133     46      3
D1050V1, multiclass
        clus
vv       CCDC92 MUTATED CCDC92 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              4              133
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC92 MUTATED        0      5      0      1      0
  CCDC92 WILD-TYPE     39     91     44     87     80
D1050V2, multiclass
        clus
vv       CCDC92 MUTATED CCDC92 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC92 MUTATED        0      1      1      0      1
  CCDC92 WILD-TYPE     26     78     72     82     57
D1050V3, multiclass
        clus
vv       CCDC92 MUTATED CCDC92 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC92 MUTATED        0      3      0      0
  CCDC92 WILD-TYPE    127     48     71     69
D1050V4, multiclass
        clus
vv       CCDC92 MUTATED CCDC92 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              3               48
  CLUS_3              0               71
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC92 MUTATED        1      0      5      0      0
  CCDC92 WILD-TYPE     83     85     80     69     47
D1050V5, multiclass
        clus
vv       CCDC92 MUTATED CCDC92 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               85
  CLUS_3              5               80
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC92 MUTATED        1      0      1      4
  CCDC92 WILD-TYPE     94     74    120     76
D1050V6, multiclass
        clus
vv       CCDC92 MUTATED CCDC92 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC92 MUTATED        2      2      2      0      0      1
  CCDC92 WILD-TYPE     50     62     70    104     40     58
D1050V7, multiclass
        clus
vv       CCDC92 MUTATED CCDC92 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              2               62
  CLUS_3              2               70
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC92 MUTATED        6      0      1
  CCDC92 WILD-TYPE    211     75     98
D1050V8, multiclass
        clus
vv       CCDC92 MUTATED CCDC92 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC92 MUTATED        3      0      2
  CCDC92 WILD-TYPE    118    108     70
D1050V9, multiclass
        clus
vv       CCDC92 MUTATED CCDC92 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC92 MUTATED        1      0      1      0      3
  CCDC92 WILD-TYPE     87     66     44     55     44
D1050V10, multiclass
        clus
vv       CCDC92 MUTATED CCDC92 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1051) Variable = CNGA1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNGA1 MUTATED        1      8      1      0
  CNGA1 WILD-TYPE    203    129     46      3
D1051V1, multiclass
        clus
vv       CNGA1 MUTATED CNGA1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNGA1 MUTATED        1      6      0      1      0
  CNGA1 WILD-TYPE     38     90     44     87     80
D1051V2, multiclass
        clus
vv       CNGA1 MUTATED CNGA1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNGA1 MUTATED        1      3      2      1      2
  CNGA1 WILD-TYPE     25     76     71     81     56
D1051V3, multiclass
        clus
vv       CNGA1 MUTATED CNGA1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNGA1 MUTATED        2      6      1      0
  CNGA1 WILD-TYPE    125     45     70     69
D1051V4, multiclass
        clus
vv       CNGA1 MUTATED CNGA1 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             6              45
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNGA1 MUTATED        2      0      5      0      0
  CNGA1 WILD-TYPE     82     85     80     69     47
D1051V5, multiclass
        clus
vv       CNGA1 MUTATED CNGA1 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             0              85
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CNGA1 MUTATED        2      0      1      4
  CNGA1 WILD-TYPE     93     74    120     76
D1051V6, multiclass
        clus
vv       CNGA1 MUTATED CNGA1 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CNGA1 MUTATED        2      3      3      1      0      1
  CNGA1 WILD-TYPE     50     61     69    103     40     58
D1051V7, multiclass
        clus
vv       CNGA1 MUTATED CNGA1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNGA1 MUTATED        9      0      1
  CNGA1 WILD-TYPE    208     75     98
D1051V8, multiclass
        clus
vv       CNGA1 MUTATED CNGA1 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CNGA1 MUTATED        2      1      5
  CNGA1 WILD-TYPE    119    107     67
D1051V9, multiclass
        clus
vv       CNGA1 MUTATED CNGA1 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CNGA1 MUTATED        1      1      2      0      4
  CNGA1 WILD-TYPE     87     65     43     55     43
D1051V10, multiclass
        clus
vv       CNGA1 MUTATED CNGA1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1052) Variable = RAE1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAE1 MUTATED        4      4      0      0
  RAE1 WILD-TYPE    200    133     47      3
D1052V1, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            4            200
  CLUS_2            4            133
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAE1 MUTATED        0      3      2      1      0
  RAE1 WILD-TYPE     39     93     42     87     80
D1052V2, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAE1 MUTATED        0      1      3      2      0
  RAE1 WILD-TYPE     26     78     70     80     58
D1052V3, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            1             78
  CLUS_3            3             70
  CLUS_4            2             80
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAE1 MUTATED        3      1      1      1
  RAE1 WILD-TYPE    124     50     70     68
D1052V4, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            1             50
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAE1 MUTATED        2      2      2      1      1
  RAE1 WILD-TYPE     82     83     83     68     46
D1052V5, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            2             83
  CLUS_3            2             83
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RAE1 MUTATED        1      2      3      2
  RAE1 WILD-TYPE     94     72    118     78
D1052V6, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            2             72
  CLUS_3            3            118
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RAE1 MUTATED        3      1      1      2      0      1
  RAE1 WILD-TYPE     49     63     71    102     40     58
D1052V7, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            1             63
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAE1 MUTATED        4      1      3
  RAE1 WILD-TYPE    213     74     96
D1052V8, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            4            213
  CLUS_2            1             74
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RAE1 MUTATED        3      1      0
  RAE1 WILD-TYPE    118    107     72
D1052V9, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            1            107
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RAE1 MUTATED        2      1      0      1      0
  RAE1 WILD-TYPE     86     65     45     54     47
D1052V10, multiclass
        clus
vv       RAE1 MUTATED RAE1 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            1             54
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1053) Variable = ZC3H8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H8 MUTATED        2      2      0      0
  ZC3H8 WILD-TYPE    202    135     47      3
D1053V1, multiclass
        clus
vv       ZC3H8 MUTATED ZC3H8 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             2             135
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H8 MUTATED        1      2      0      0      0
  ZC3H8 WILD-TYPE     38     94     44     88     80
D1053V2, multiclass
        clus
vv       ZC3H8 MUTATED ZC3H8 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             2              94
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H8 MUTATED        1      1      1      0      1
  ZC3H8 WILD-TYPE     25     78     72     82     57
D1053V3, multiclass
        clus
vv       ZC3H8 MUTATED ZC3H8 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H8 MUTATED        1      1      1      1
  ZC3H8 WILD-TYPE    126     50     70     68
D1053V4, multiclass
        clus
vv       ZC3H8 MUTATED ZC3H8 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             1              50
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H8 MUTATED        2      0      1      0      1
  ZC3H8 WILD-TYPE     82     85     84     69     46
D1053V5, multiclass
        clus
vv       ZC3H8 MUTATED ZC3H8 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             0              85
  CLUS_3             1              84
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H8 MUTATED        1      0      1      2
  ZC3H8 WILD-TYPE     94     74    120     78
D1053V6, multiclass
        clus
vv       ZC3H8 MUTATED ZC3H8 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZC3H8 MUTATED        1      0      1      1      0      1
  ZC3H8 WILD-TYPE     51     64     71    103     40     58
D1053V7, multiclass
        clus
vv       ZC3H8 MUTATED ZC3H8 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             0              64
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZC3H8 MUTATED        1      1      2
  ZC3H8 WILD-TYPE    216     74     97
D1053V8, multiclass
        clus
vv       ZC3H8 MUTATED ZC3H8 WILD-TYPE
  CLUS_1             1             216
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ZC3H8 MUTATED        1      1      1
  ZC3H8 WILD-TYPE    120    107     71
D1053V9, multiclass
        clus
vv       ZC3H8 MUTATED ZC3H8 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H8 MUTATED        2      0      0      0      1
  ZC3H8 WILD-TYPE     86     66     45     55     46
D1053V10, multiclass
        clus
vv       ZC3H8 MUTATED ZC3H8 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1054) Variable = WDR53 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR53 MUTATED        0      4      2      0
  WDR53 WILD-TYPE    204    133     45      3
D1054V1, multiclass
        clus
vv       WDR53 MUTATED WDR53 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             4             133
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR53 MUTATED        2      2      2      0      0
  WDR53 WILD-TYPE     37     94     42     88     80
D1054V2, multiclass
        clus
vv       WDR53 MUTATED WDR53 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             2              94
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR53 MUTATED        0      2      0      0      2
  WDR53 WILD-TYPE     26     77     73     82     56
D1054V3, multiclass
        clus
vv       WDR53 MUTATED WDR53 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             0              73
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR53 MUTATED        1      1      2      0
  WDR53 WILD-TYPE    126     50     69     69
D1054V4, multiclass
        clus
vv       WDR53 MUTATED WDR53 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             1              50
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR53 MUTATED        0      0      6      0      0
  WDR53 WILD-TYPE     84     85     79     69     47
D1054V5, multiclass
        clus
vv       WDR53 MUTATED WDR53 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             6              79
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WDR53 MUTATED        0      0      1      5
  WDR53 WILD-TYPE     95     74    120     75
D1054V6, multiclass
        clus
vv       WDR53 MUTATED WDR53 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WDR53 MUTATED        2      2      0      2      0      0
  WDR53 WILD-TYPE     50     62     72    102     40     59
D1054V7, multiclass
        clus
vv       WDR53 MUTATED WDR53 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR53 MUTATED        6      0      0
  WDR53 WILD-TYPE    211     75     99
D1054V8, multiclass
        clus
vv       WDR53 MUTATED WDR53 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WDR53 MUTATED        3      1      1
  WDR53 WILD-TYPE    118    107     71
D1054V9, multiclass
        clus
vv       WDR53 MUTATED WDR53 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WDR53 MUTATED        3      0      1      0      1
  WDR53 WILD-TYPE     85     66     44     55     46
D1054V10, multiclass
        clus
vv       WDR53 MUTATED WDR53 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1055) Variable = EPB41L4B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB41L4B MUTATED        2     15      0      0
  EPB41L4B WILD-TYPE    202    122     47      3
D1055V1, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                2                202
  CLUS_2               15                122
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41L4B MUTATED        3      8      0      0      2
  EPB41L4B WILD-TYPE     36     88     44     88     78
D1055V2, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                3                 36
  CLUS_2                8                 88
  CLUS_3                0                 44
  CLUS_4                0                 88
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41L4B MUTATED        1      2      5      2      3
  EPB41L4B WILD-TYPE     25     77     68     80     55
D1055V3, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                2                 77
  CLUS_3                5                 68
  CLUS_4                2                 80
  CLUS_5                3                 55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB41L4B MUTATED        1      9      1      2
  EPB41L4B WILD-TYPE    126     42     70     67
D1055V4, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                1                126
  CLUS_2                9                 42
  CLUS_3                1                 70
  CLUS_4                2                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41L4B MUTATED        1      5     10      0      1
  EPB41L4B WILD-TYPE     83     80     75     69     46
D1055V5, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                5                 80
  CLUS_3               10                 75
  CLUS_4                0                 69
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPB41L4B MUTATED        4      3      2      8
  EPB41L4B WILD-TYPE     91     71    119     72
D1055V6, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                4                 91
  CLUS_2                3                 71
  CLUS_3                2                119
  CLUS_4                8                 72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPB41L4B MUTATED        5      7      2      3      1      0
  EPB41L4B WILD-TYPE     47     57     70    101     39     59
D1055V7, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                5                 47
  CLUS_2                7                 57
  CLUS_3                2                 70
  CLUS_4                3                101
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  EPB41L4B MUTATED       13      3      2
  EPB41L4B WILD-TYPE    204     72     97
D1055V8, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1               13                204
  CLUS_2                3                 72
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  EPB41L4B MUTATED        6      3      3
  EPB41L4B WILD-TYPE    115    105     69
D1055V9, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                6                115
  CLUS_2                3                105
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPB41L4B MUTATED        4      2      3      0      3
  EPB41L4B WILD-TYPE     84     64     42     55     44
D1055V10, multiclass
        clus
vv       EPB41L4B MUTATED EPB41L4B WILD-TYPE
  CLUS_1                4                 84
  CLUS_2                2                 64
  CLUS_3                3                 42
  CLUS_4                0                 55
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1056) Variable = RNMT MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNMT MUTATED        0      7      1      0
  RNMT WILD-TYPE    204    130     46      3
D1056V1, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            0            204
  CLUS_2            7            130
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNMT MUTATED        1      2      2      0      2
  RNMT WILD-TYPE     38     94     42     88     78
D1056V2, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            1             38
  CLUS_2            2             94
  CLUS_3            2             42
  CLUS_4            0             88
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNMT MUTATED        1      3      1      0      2
  RNMT WILD-TYPE     25     76     72     82     56
D1056V3, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            1             72
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNMT MUTATED        1      4      2      0
  RNMT WILD-TYPE    126     47     69     69
D1056V4, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            1            126
  CLUS_2            4             47
  CLUS_3            2             69
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNMT MUTATED        0      1      7      0      0
  RNMT WILD-TYPE     84     84     78     69     47
D1056V5, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            7             78
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RNMT MUTATED        1      2      2      3
  RNMT WILD-TYPE     94     72    119     77
D1056V6, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            1             94
  CLUS_2            2             72
  CLUS_3            2            119
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RNMT MUTATED        1      6      1      0      0      0
  RNMT WILD-TYPE     51     58     71    104     40     59
D1056V7, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            1             51
  CLUS_2            6             58
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RNMT MUTATED        7      1      0
  RNMT WILD-TYPE    210     74     99
D1056V8, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            7            210
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RNMT MUTATED        2      0      5
  RNMT WILD-TYPE    119    108     67
D1056V9, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            2            119
  CLUS_2            0            108
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RNMT MUTATED        2      0      4      0      1
  RNMT WILD-TYPE     86     66     41     55     46
D1056V10, multiclass
        clus
vv       RNMT MUTATED RNMT WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            4             41
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1057) Variable = SUCNR1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUCNR1 MUTATED        0      4      0      0
  SUCNR1 WILD-TYPE    204    133     47      3
D1057V1, multiclass
        clus
vv       SUCNR1 MUTATED SUCNR1 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              4              133
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SUCNR1 MUTATED        0      2      1      0      0
  SUCNR1 WILD-TYPE     39     94     43     88     80
D1057V2, multiclass
        clus
vv       SUCNR1 MUTATED SUCNR1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              2               94
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SUCNR1 MUTATED        0      2      2      0      0
  SUCNR1 WILD-TYPE     26     77     71     82     58
D1057V3, multiclass
        clus
vv       SUCNR1 MUTATED SUCNR1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUCNR1 MUTATED        1      1      2      0
  SUCNR1 WILD-TYPE    126     50     69     69
D1057V4, multiclass
        clus
vv       SUCNR1 MUTATED SUCNR1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              1               50
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SUCNR1 MUTATED        0      1      2      0      1
  SUCNR1 WILD-TYPE     84     84     83     69     46
D1057V5, multiclass
        clus
vv       SUCNR1 MUTATED SUCNR1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              2               83
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SUCNR1 MUTATED        0      1      0      3
  SUCNR1 WILD-TYPE     95     73    121     77
D1057V6, multiclass
        clus
vv       SUCNR1 MUTATED SUCNR1 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SUCNR1 MUTATED        2      1      0      1      0      0
  SUCNR1 WILD-TYPE     50     63     72    103     40     59
D1057V7, multiclass
        clus
vv       SUCNR1 MUTATED SUCNR1 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              1               63
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SUCNR1 MUTATED        4      0      0
  SUCNR1 WILD-TYPE    213     75     99
D1057V8, multiclass
        clus
vv       SUCNR1 MUTATED SUCNR1 WILD-TYPE
  CLUS_1              4              213
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SUCNR1 MUTATED        2      1      0
  SUCNR1 WILD-TYPE    119    107     72
D1057V9, multiclass
        clus
vv       SUCNR1 MUTATED SUCNR1 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              1              107
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SUCNR1 MUTATED        1      0      0      0      2
  SUCNR1 WILD-TYPE     87     66     45     55     45
D1057V10, multiclass
        clus
vv       SUCNR1 MUTATED SUCNR1 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              0               45
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1058) Variable = NYNRIN MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NYNRIN MUTATED        3     12      2      0
  NYNRIN WILD-TYPE    201    125     45      3
D1058V1, multiclass
        clus
vv       NYNRIN MUTATED NYNRIN WILD-TYPE
  CLUS_1              3              201
  CLUS_2             12              125
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NYNRIN MUTATED        1      8      2      1      0
  NYNRIN WILD-TYPE     38     88     42     87     80
D1058V2, multiclass
        clus
vv       NYNRIN MUTATED NYNRIN WILD-TYPE
  CLUS_1              1               38
  CLUS_2              8               88
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NYNRIN MUTATED        0      5      6      0      2
  NYNRIN WILD-TYPE     26     74     67     82     56
D1058V3, multiclass
        clus
vv       NYNRIN MUTATED NYNRIN WILD-TYPE
  CLUS_1              0               26
  CLUS_2              5               74
  CLUS_3              6               67
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NYNRIN MUTATED        3      9      1      0
  NYNRIN WILD-TYPE    124     42     70     69
D1058V4, multiclass
        clus
vv       NYNRIN MUTATED NYNRIN WILD-TYPE
  CLUS_1              3              124
  CLUS_2              9               42
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NYNRIN MUTATED        1      0     12      2      1
  NYNRIN WILD-TYPE     83     85     73     67     46
D1058V5, multiclass
        clus
vv       NYNRIN MUTATED NYNRIN WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               85
  CLUS_3             12               73
  CLUS_4              2               67
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NYNRIN MUTATED        3      2      2      9
  NYNRIN WILD-TYPE     92     72    119     71
D1058V6, multiclass
        clus
vv       NYNRIN MUTATED NYNRIN WILD-TYPE
  CLUS_1              3               92
  CLUS_2              2               72
  CLUS_3              2              119
  CLUS_4              9               71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NYNRIN MUTATED        4      7      5      0      0      1
  NYNRIN WILD-TYPE     48     57     67    104     40     58
D1058V7, multiclass
        clus
vv       NYNRIN MUTATED NYNRIN WILD-TYPE
  CLUS_1              4               48
  CLUS_2              7               57
  CLUS_3              5               67
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NYNRIN MUTATED       14      0      3
  NYNRIN WILD-TYPE    203     75     96
D1058V8, multiclass
        clus
vv       NYNRIN MUTATED NYNRIN WILD-TYPE
  CLUS_1             14              203
  CLUS_2              0               75
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NYNRIN MUTATED        7      1      2
  NYNRIN WILD-TYPE    114    107     70
D1058V9, multiclass
        clus
vv       NYNRIN MUTATED NYNRIN WILD-TYPE
  CLUS_1              7              114
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NYNRIN MUTATED        4      0      1      0      5
  NYNRIN WILD-TYPE     84     66     44     55     42
D1058V10, multiclass
        clus
vv       NYNRIN MUTATED NYNRIN WILD-TYPE
  CLUS_1              4               84
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1059) Variable = PHTF1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHTF1 MUTATED        3      7      1      0
  PHTF1 WILD-TYPE    201    130     46      3
D1059V1, multiclass
        clus
vv       PHTF1 MUTATED PHTF1 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             7             130
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHTF1 MUTATED        1      6      1      2      0
  PHTF1 WILD-TYPE     38     90     43     86     80
D1059V2, multiclass
        clus
vv       PHTF1 MUTATED PHTF1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             2              86
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHTF1 MUTATED        0      2      6      0      2
  PHTF1 WILD-TYPE     26     77     67     82     56
D1059V3, multiclass
        clus
vv       PHTF1 MUTATED PHTF1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             6              67
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHTF1 MUTATED        3      6      1      0
  PHTF1 WILD-TYPE    124     45     70     69
D1059V4, multiclass
        clus
vv       PHTF1 MUTATED PHTF1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             6              45
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHTF1 MUTATED        1      0      6      1      2
  PHTF1 WILD-TYPE     83     85     79     68     45
D1059V5, multiclass
        clus
vv       PHTF1 MUTATED PHTF1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PHTF1 MUTATED        3      0      1      6
  PHTF1 WILD-TYPE     92     74    120     74
D1059V6, multiclass
        clus
vv       PHTF1 MUTATED PHTF1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PHTF1 MUTATED        3      2      4      0      0      2
  PHTF1 WILD-TYPE     49     62     68    104     40     57
D1059V7, multiclass
        clus
vv       PHTF1 MUTATED PHTF1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             2              62
  CLUS_3             4              68
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHTF1 MUTATED        9      0      2
  PHTF1 WILD-TYPE    208     75     97
D1059V8, multiclass
        clus
vv       PHTF1 MUTATED PHTF1 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PHTF1 MUTATED        5      0      4
  PHTF1 WILD-TYPE    116    108     68
D1059V9, multiclass
        clus
vv       PHTF1 MUTATED PHTF1 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PHTF1 MUTATED        2      0      1      1      5
  PHTF1 WILD-TYPE     86     66     44     54     42
D1059V10, multiclass
        clus
vv       PHTF1 MUTATED PHTF1 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1060) Variable = CARD14 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CARD14 MUTATED        1     11      0      0
  CARD14 WILD-TYPE    203    126     47      3
D1060V1, multiclass
        clus
vv       CARD14 MUTATED CARD14 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             11              126
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CARD14 MUTATED        1      5      1      1      1
  CARD14 WILD-TYPE     38     91     43     87     79
D1060V2, multiclass
        clus
vv       CARD14 MUTATED CARD14 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CARD14 MUTATED        1      4      3      0      3
  CARD14 WILD-TYPE     25     75     70     82     55
D1060V3, multiclass
        clus
vv       CARD14 MUTATED CARD14 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              4               75
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CARD14 MUTATED        4      3      2      2
  CARD14 WILD-TYPE    123     48     69     67
D1060V4, multiclass
        clus
vv       CARD14 MUTATED CARD14 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              3               48
  CLUS_3              2               69
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CARD14 MUTATED        2      3      5      1      2
  CARD14 WILD-TYPE     82     82     80     68     45
D1060V5, multiclass
        clus
vv       CARD14 MUTATED CARD14 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              3               82
  CLUS_3              5               80
  CLUS_4              1               68
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CARD14 MUTATED        3      3      2      5
  CARD14 WILD-TYPE     92     71    119     75
D1060V6, multiclass
        clus
vv       CARD14 MUTATED CARD14 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              3               71
  CLUS_3              2              119
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CARD14 MUTATED        6      5      0      0      1      1
  CARD14 WILD-TYPE     46     59     72    104     39     58
D1060V7, multiclass
        clus
vv       CARD14 MUTATED CARD14 WILD-TYPE
  CLUS_1              6               46
  CLUS_2              5               59
  CLUS_3              0               72
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CARD14 MUTATED        9      1      3
  CARD14 WILD-TYPE    208     74     96
D1060V8, multiclass
        clus
vv       CARD14 MUTATED CARD14 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              1               74
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CARD14 MUTATED        6      0      2
  CARD14 WILD-TYPE    115    108     70
D1060V9, multiclass
        clus
vv       CARD14 MUTATED CARD14 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CARD14 MUTATED        3      0      1      1      3
  CARD14 WILD-TYPE     85     66     44     54     44
D1060V10, multiclass
        clus
vv       CARD14 MUTATED CARD14 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1061) Variable = CASKIN1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASKIN1 MUTATED        5     11      1      0
  CASKIN1 WILD-TYPE    199    126     46      3
D1061V1, multiclass
        clus
vv       CASKIN1 MUTATED CASKIN1 WILD-TYPE
  CLUS_1               5               199
  CLUS_2              11               126
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASKIN1 MUTATED        3     10      1      2      1
  CASKIN1 WILD-TYPE     36     86     43     86     79
D1061V2, multiclass
        clus
vv       CASKIN1 MUTATED CASKIN1 WILD-TYPE
  CLUS_1               3                36
  CLUS_2              10                86
  CLUS_3               1                43
  CLUS_4               2                86
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASKIN1 MUTATED        2      4      5      1      2
  CASKIN1 WILD-TYPE     24     75     68     81     56
D1061V3, multiclass
        clus
vv       CASKIN1 MUTATED CASKIN1 WILD-TYPE
  CLUS_1               2                24
  CLUS_2               4                75
  CLUS_3               5                68
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASKIN1 MUTATED        4      7      1      2
  CASKIN1 WILD-TYPE    123     44     70     67
D1061V4, multiclass
        clus
vv       CASKIN1 MUTATED CASKIN1 WILD-TYPE
  CLUS_1               4               123
  CLUS_2               7                44
  CLUS_3               1                70
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASKIN1 MUTATED        1      2      6      5      2
  CASKIN1 WILD-TYPE     83     83     79     64     45
D1061V5, multiclass
        clus
vv       CASKIN1 MUTATED CASKIN1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               2                83
  CLUS_3               6                79
  CLUS_4               5                64
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASKIN1 MUTATED        6      2      2      6
  CASKIN1 WILD-TYPE     89     72    119     74
D1061V6, multiclass
        clus
vv       CASKIN1 MUTATED CASKIN1 WILD-TYPE
  CLUS_1               6                89
  CLUS_2               2                72
  CLUS_3               2               119
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASKIN1 MUTATED        5      2      3      2      4      1
  CASKIN1 WILD-TYPE     47     62     69    102     36     58
D1061V7, multiclass
        clus
vv       CASKIN1 MUTATED CASKIN1 WILD-TYPE
  CLUS_1               5                47
  CLUS_2               2                62
  CLUS_3               3                69
  CLUS_4               2               102
  CLUS_5               4                36
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CASKIN1 MUTATED       13      0      4
  CASKIN1 WILD-TYPE    204     75     95
D1061V8, multiclass
        clus
vv       CASKIN1 MUTATED CASKIN1 WILD-TYPE
  CLUS_1              13               204
  CLUS_2               0                75
  CLUS_3               4                95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CASKIN1 MUTATED        9      2      3
  CASKIN1 WILD-TYPE    112    106     69
D1061V9, multiclass
        clus
vv       CASKIN1 MUTATED CASKIN1 WILD-TYPE
  CLUS_1               9               112
  CLUS_2               2               106
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASKIN1 MUTATED        5      0      2      2      5
  CASKIN1 WILD-TYPE     83     66     43     53     42
D1061V10, multiclass
        clus
vv       CASKIN1 MUTATED CASKIN1 WILD-TYPE
  CLUS_1               5                83
  CLUS_2               0                66
  CLUS_3               2                43
  CLUS_4               2                53
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1062) Variable = C13ORF18 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF18 MUTATED        5      4      1      0
  C13ORF18 WILD-TYPE    199    133     46      3
D1062V1, multiclass
        clus
vv       C13ORF18 MUTATED C13ORF18 WILD-TYPE
  CLUS_1                5                199
  CLUS_2                4                133
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C13ORF18 MUTATED        0      5      1      1      1
  C13ORF18 WILD-TYPE     39     91     43     87     79
D1062V2, multiclass
        clus
vv       C13ORF18 MUTATED C13ORF18 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                5                 91
  CLUS_3                1                 43
  CLUS_4                1                 87
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C13ORF18 MUTATED        1      2      1      2      4
  C13ORF18 WILD-TYPE     25     77     72     80     54
D1062V3, multiclass
        clus
vv       C13ORF18 MUTATED C13ORF18 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                2                 77
  CLUS_3                1                 72
  CLUS_4                2                 80
  CLUS_5                4                 54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF18 MUTATED        4      1      2      3
  C13ORF18 WILD-TYPE    123     50     69     66
D1062V4, multiclass
        clus
vv       C13ORF18 MUTATED C13ORF18 WILD-TYPE
  CLUS_1                4                123
  CLUS_2                1                 50
  CLUS_3                2                 69
  CLUS_4                3                 66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C13ORF18 MUTATED        0      3      0      3      4
  C13ORF18 WILD-TYPE     84     82     85     66     43
D1062V5, multiclass
        clus
vv       C13ORF18 MUTATED C13ORF18 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                3                 82
  CLUS_3                0                 85
  CLUS_4                3                 66
  CLUS_5                4                 43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C13ORF18 MUTATED        5      4      0      1
  C13ORF18 WILD-TYPE     90     70    121     79
D1062V6, multiclass
        clus
vv       C13ORF18 MUTATED C13ORF18 WILD-TYPE
  CLUS_1                5                 90
  CLUS_2                4                 70
  CLUS_3                0                121
  CLUS_4                1                 79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C13ORF18 MUTATED        1      2      0      3      4      0
  C13ORF18 WILD-TYPE     51     62     72    101     36     59
D1062V7, multiclass
        clus
vv       C13ORF18 MUTATED C13ORF18 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                2                 62
  CLUS_3                0                 72
  CLUS_4                3                101
  CLUS_5                4                 36
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF18 MUTATED        6      3      1
  C13ORF18 WILD-TYPE    211     72     98
D1062V8, multiclass
        clus
vv       C13ORF18 MUTATED C13ORF18 WILD-TYPE
  CLUS_1                6                211
  CLUS_2                3                 72
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C13ORF18 MUTATED        3      3      2
  C13ORF18 WILD-TYPE    118    105     70
D1062V9, multiclass
        clus
vv       C13ORF18 MUTATED C13ORF18 WILD-TYPE
  CLUS_1                3                118
  CLUS_2                3                105
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C13ORF18 MUTATED        2      2      1      0      3
  C13ORF18 WILD-TYPE     86     64     44     55     44
D1062V10, multiclass
        clus
vv       C13ORF18 MUTATED C13ORF18 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                2                 64
  CLUS_3                1                 44
  CLUS_4                0                 55
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1063) Variable = CCDC37 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC37 MUTATED        1     12      0      0
  CCDC37 WILD-TYPE    203    125     47      3
D1063V1, multiclass
        clus
vv       CCDC37 MUTATED CCDC37 WILD-TYPE
  CLUS_1              1              203
  CLUS_2             12              125
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC37 MUTATED        0      7      2      0      1
  CCDC37 WILD-TYPE     39     89     42     88     79
D1063V2, multiclass
        clus
vv       CCDC37 MUTATED CCDC37 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              7               89
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC37 MUTATED        1      8      4      0      0
  CCDC37 WILD-TYPE     25     71     69     82     58
D1063V3, multiclass
        clus
vv       CCDC37 MUTATED CCDC37 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              8               71
  CLUS_3              4               69
  CLUS_4              0               82
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC37 MUTATED        1      7      5      0
  CCDC37 WILD-TYPE    126     44     66     69
D1063V4, multiclass
        clus
vv       CCDC37 MUTATED CCDC37 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              7               44
  CLUS_3              5               66
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC37 MUTATED        0      3      8      0      1
  CCDC37 WILD-TYPE     84     82     77     69     46
D1063V5, multiclass
        clus
vv       CCDC37 MUTATED CCDC37 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3              8               77
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CCDC37 MUTATED        1      2      1      8
  CCDC37 WILD-TYPE     94     72    120     72
D1063V6, multiclass
        clus
vv       CCDC37 MUTATED CCDC37 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              8               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CCDC37 MUTATED        4      7      1      2      0      0
  CCDC37 WILD-TYPE     48     57     71    102     40     59
D1063V7, multiclass
        clus
vv       CCDC37 MUTATED CCDC37 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              7               57
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC37 MUTATED       14      0      0
  CCDC37 WILD-TYPE    203     75     99
D1063V8, multiclass
        clus
vv       CCDC37 MUTATED CCDC37 WILD-TYPE
  CLUS_1             14              203
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CCDC37 MUTATED        4      1      3
  CCDC37 WILD-TYPE    117    107     69
D1063V9, multiclass
        clus
vv       CCDC37 MUTATED CCDC37 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CCDC37 MUTATED        2      0      3      0      3
  CCDC37 WILD-TYPE     86     66     42     55     44
D1063V10, multiclass
        clus
vv       CCDC37 MUTATED CCDC37 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1064) Variable = ETV1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETV1 MUTATED        2      6      0      0
  ETV1 WILD-TYPE    202    131     47      3
D1064V1, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            2            202
  CLUS_2            6            131
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ETV1 MUTATED        1      4      0      1      0
  ETV1 WILD-TYPE     38     92     44     87     80
D1064V2, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            4             92
  CLUS_3            0             44
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ETV1 MUTATED        0      4      2      0      2
  ETV1 WILD-TYPE     26     75     71     82     56
D1064V3, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETV1 MUTATED        0      5      3      0
  ETV1 WILD-TYPE    127     46     68     69
D1064V4, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            5             46
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ETV1 MUTATED        1      0      5      0      1
  ETV1 WILD-TYPE     83     85     80     69     46
D1064V5, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            0             85
  CLUS_3            5             80
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ETV1 MUTATED        0      1      1      5
  ETV1 WILD-TYPE     95     73    120     75
D1064V6, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            0             95
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ETV1 MUTATED        3      2      1      1      0      1
  ETV1 WILD-TYPE     49     62     71    103     40     58
D1064V7, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            2             62
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ETV1 MUTATED        6      0      2
  ETV1 WILD-TYPE    211     75     97
D1064V8, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            6            211
  CLUS_2            0             75
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ETV1 MUTATED        3      0      3
  ETV1 WILD-TYPE    118    108     69
D1064V9, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            3            118
  CLUS_2            0            108
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ETV1 MUTATED        2      0      1      1      2
  ETV1 WILD-TYPE     86     66     44     54     45
D1064V10, multiclass
        clus
vv       ETV1 MUTATED ETV1 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1065) Variable = TSPAN13 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPAN13 MUTATED        0      4      0      0
  TSPAN13 WILD-TYPE    204    133     47      3
D1065V1, multiclass
        clus
vv       TSPAN13 MUTATED TSPAN13 WILD-TYPE
  CLUS_1               0               204
  CLUS_2               4               133
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSPAN13 MUTATED        0      2      1      0      1
  TSPAN13 WILD-TYPE     39     94     43     88     79
D1065V2, multiclass
        clus
vv       TSPAN13 MUTATED TSPAN13 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               2                94
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSPAN13 MUTATED        1      0      1      0      1
  TSPAN13 WILD-TYPE     25     79     72     82     57
D1065V3, multiclass
        clus
vv       TSPAN13 MUTATED TSPAN13 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                79
  CLUS_3               1                72
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPAN13 MUTATED        1      1      0      1
  TSPAN13 WILD-TYPE    126     50     71     68
D1065V4, multiclass
        clus
vv       TSPAN13 MUTATED TSPAN13 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               1                50
  CLUS_3               0                71
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSPAN13 MUTATED        0      2      2      0      0
  TSPAN13 WILD-TYPE     84     83     83     69     47
D1065V5, multiclass
        clus
vv       TSPAN13 MUTATED TSPAN13 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3               2                83
  CLUS_4               0                69
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSPAN13 MUTATED        2      1      1      0
  TSPAN13 WILD-TYPE     93     73    120     80
D1065V6, multiclass
        clus
vv       TSPAN13 MUTATED TSPAN13 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               0                80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TSPAN13 MUTATED        0      3      0      0      1      0
  TSPAN13 WILD-TYPE     52     61     72    104     39     59
D1065V7, multiclass
        clus
vv       TSPAN13 MUTATED TSPAN13 WILD-TYPE
  CLUS_1               0                52
  CLUS_2               3                61
  CLUS_3               0                72
  CLUS_4               0               104
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN13 MUTATED        3      0      1
  TSPAN13 WILD-TYPE    214     75     98
D1065V8, multiclass
        clus
vv       TSPAN13 MUTATED TSPAN13 WILD-TYPE
  CLUS_1               3               214
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSPAN13 MUTATED        0      1      3
  TSPAN13 WILD-TYPE    121    107     69
D1065V9, multiclass
        clus
vv       TSPAN13 MUTATED TSPAN13 WILD-TYPE
  CLUS_1               0               121
  CLUS_2               1               107
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSPAN13 MUTATED        2      0      2      0      0
  TSPAN13 WILD-TYPE     86     66     43     55     47
D1065V10, multiclass
        clus
vv       TSPAN13 MUTATED TSPAN13 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1066) Variable = MAP1A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP1A MUTATED        4     14      1      0
  MAP1A WILD-TYPE    200    123     46      3
D1066V1, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             4             200
  CLUS_2            14             123
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP1A MUTATED        0     12      1      1      1
  MAP1A WILD-TYPE     39     84     43     87     79
D1066V2, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             0              39
  CLUS_2            12              84
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP1A MUTATED        2      4      7      0      4
  MAP1A WILD-TYPE     24     75     66     82     54
D1066V3, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             2              24
  CLUS_2             4              75
  CLUS_3             7              66
  CLUS_4             0              82
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP1A MUTATED        6      9      1      1
  MAP1A WILD-TYPE    121     42     70     68
D1066V4, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             6             121
  CLUS_2             9              42
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP1A MUTATED        2      0     10      5      1
  MAP1A WILD-TYPE     82     85     75     64     46
D1066V5, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             2              82
  CLUS_2             0              85
  CLUS_3            10              75
  CLUS_4             5              64
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MAP1A MUTATED        7      0      3      8
  MAP1A WILD-TYPE     88     74    118     72
D1066V6, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             7              88
  CLUS_2             0              74
  CLUS_3             3             118
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MAP1A MUTATED        6      7      2      1      1      2
  MAP1A WILD-TYPE     46     57     70    103     39     57
D1066V7, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             6              46
  CLUS_2             7              57
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             2              57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAP1A MUTATED       15      0      4
  MAP1A WILD-TYPE    202     75     95
D1066V8, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1            15             202
  CLUS_2             0              75
  CLUS_3             4              95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MAP1A MUTATED        8      1      5
  MAP1A WILD-TYPE    113    107     67
D1066V9, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             8             113
  CLUS_2             1             107
  CLUS_3             5              67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MAP1A MUTATED        2      0      4      1      7
  MAP1A WILD-TYPE     86     66     41     54     40
D1066V10, multiclass
        clus
vv       MAP1A MUTATED MAP1A WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             4              41
  CLUS_4             1              54
  CLUS_5             7              40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1067) Variable = FBXO32 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO32 MUTATED        1      6      0      0
  FBXO32 WILD-TYPE    203    131     47      3
D1067V1, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              6              131
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO32 MUTATED        1      4      1      0      0
  FBXO32 WILD-TYPE     38     92     43     88     80
D1067V2, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO32 MUTATED        0      2      2      0      2
  FBXO32 WILD-TYPE     26     77     71     82     56
D1067V3, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO32 MUTATED        0      5      1      0
  FBXO32 WILD-TYPE    127     46     70     69
D1067V4, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              5               46
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO32 MUTATED        0      1      5      0      1
  FBXO32 WILD-TYPE     84     84     80     69     46
D1067V5, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              5               80
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXO32 MUTATED        0      0      0      7
  FBXO32 WILD-TYPE     95     74    121     73
D1067V6, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              0               74
  CLUS_3              0              121
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXO32 MUTATED        5      2      0      0      0      0
  FBXO32 WILD-TYPE     47     62     72    104     40     59
D1067V7, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO32 MUTATED        7      0      0
  FBXO32 WILD-TYPE    210     75     99
D1067V8, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              7              210
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXO32 MUTATED        4      0      1
  FBXO32 WILD-TYPE    117    108     71
D1067V9, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              0              108
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXO32 MUTATED        1      0      1      0      3
  FBXO32 WILD-TYPE     87     66     44     55     44
D1067V10, multiclass
        clus
vv       FBXO32 MUTATED FBXO32 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1068) Variable = PRAMEF2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRAMEF2 MUTATED        5      4      0      1
  PRAMEF2 WILD-TYPE    199    133     47      2
D1068V1, multiclass
        clus
vv       PRAMEF2 MUTATED PRAMEF2 WILD-TYPE
  CLUS_1               5               199
  CLUS_2               4               133
  CLUS_3               0                47
  CLUS_4               1                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRAMEF2 MUTATED        1      6      0      1      0
  PRAMEF2 WILD-TYPE     38     90     44     87     80
D1068V2, multiclass
        clus
vv       PRAMEF2 MUTATED PRAMEF2 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               6                90
  CLUS_3               0                44
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRAMEF2 MUTATED        0      4      2      0      1
  PRAMEF2 WILD-TYPE     26     75     71     82     57
D1068V3, multiclass
        clus
vv       PRAMEF2 MUTATED PRAMEF2 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               4                75
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRAMEF2 MUTATED        1      4      2      0
  PRAMEF2 WILD-TYPE    126     47     69     69
D1068V4, multiclass
        clus
vv       PRAMEF2 MUTATED PRAMEF2 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               4                47
  CLUS_3               2                69
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRAMEF2 MUTATED        1      1      3      2      3
  PRAMEF2 WILD-TYPE     83     84     82     67     44
D1068V5, multiclass
        clus
vv       PRAMEF2 MUTATED PRAMEF2 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               3                82
  CLUS_4               2                67
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRAMEF2 MUTATED        3      1      1      5
  PRAMEF2 WILD-TYPE     92     73    120     75
D1068V6, multiclass
        clus
vv       PRAMEF2 MUTATED PRAMEF2 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PRAMEF2 MUTATED        4      0      2      1      2      1
  PRAMEF2 WILD-TYPE     48     64     70    103     38     58
D1068V7, multiclass
        clus
vv       PRAMEF2 MUTATED PRAMEF2 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               0                64
  CLUS_3               2                70
  CLUS_4               1               103
  CLUS_5               2                38
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRAMEF2 MUTATED        8      1      1
  PRAMEF2 WILD-TYPE    209     74     98
D1068V8, multiclass
        clus
vv       PRAMEF2 MUTATED PRAMEF2 WILD-TYPE
  CLUS_1               8               209
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  PRAMEF2 MUTATED        6      1      0
  PRAMEF2 WILD-TYPE    115    107     72
D1068V9, multiclass
        clus
vv       PRAMEF2 MUTATED PRAMEF2 WILD-TYPE
  CLUS_1               6               115
  CLUS_2               1               107
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRAMEF2 MUTATED        3      1      0      0      3
  PRAMEF2 WILD-TYPE     85     65     45     55     44
D1068V10, multiclass
        clus
vv       PRAMEF2 MUTATED PRAMEF2 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               1                65
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1069) Variable = C20ORF195 MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF195 MUTATED        3      4      1      1
  C20ORF195 WILD-TYPE    201    133     46      2
D1069V1, multiclass
        clus
vv       C20ORF195 MUTATED C20ORF195 WILD-TYPE
  CLUS_1                 3                 201
  CLUS_2                 4                 133
  CLUS_3                 1                  46
  CLUS_4                 1                   2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C20ORF195 MUTATED        0      2      2      3      1
  C20ORF195 WILD-TYPE     39     94     42     85     79
D1069V2, multiclass
        clus
vv       C20ORF195 MUTATED C20ORF195 WILD-TYPE
  CLUS_1                 0                  39
  CLUS_2                 2                  94
  CLUS_3                 2                  42
  CLUS_4                 3                  85
  CLUS_5                 1                  79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C20ORF195 MUTATED        0      5      3      1      0
  C20ORF195 WILD-TYPE     26     74     70     81     58
D1069V3, multiclass
        clus
vv       C20ORF195 MUTATED C20ORF195 WILD-TYPE
  CLUS_1                 0                  26
  CLUS_2                 5                  74
  CLUS_3                 3                  70
  CLUS_4                 1                  81
  CLUS_5                 0                  58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF195 MUTATED        3      0      5      1
  C20ORF195 WILD-TYPE    124     51     66     68
D1069V4, multiclass
        clus
vv       C20ORF195 MUTATED C20ORF195 WILD-TYPE
  CLUS_1                 3                 124
  CLUS_2                 0                  51
  CLUS_3                 5                  66
  CLUS_4                 1                  68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C20ORF195 MUTATED        0      2      1      1      3
  C20ORF195 WILD-TYPE     84     83     84     68     44
D1069V5, multiclass
        clus
vv       C20ORF195 MUTATED C20ORF195 WILD-TYPE
  CLUS_1                 0                  84
  CLUS_2                 2                  83
  CLUS_3                 1                  84
  CLUS_4                 1                  68
  CLUS_5                 3                  44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C20ORF195 MUTATED        2      1      0      4
  C20ORF195 WILD-TYPE     93     73    121     76
D1069V6, multiclass
        clus
vv       C20ORF195 MUTATED C20ORF195 WILD-TYPE
  CLUS_1                 2                  93
  CLUS_2                 1                  73
  CLUS_3                 0                 121
  CLUS_4                 4                  76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C20ORF195 MUTATED        1      1      4      3      0      0
  C20ORF195 WILD-TYPE     51     63     68    101     40     59
D1069V7, multiclass
        clus
vv       C20ORF195 MUTATED C20ORF195 WILD-TYPE
  CLUS_1                 1                  51
  CLUS_2                 1                  63
  CLUS_3                 4                  68
  CLUS_4                 3                 101
  CLUS_5                 0                  40
  CLUS_6                 0                  59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF195 MUTATED        8      1      0
  C20ORF195 WILD-TYPE    209     74     99
D1069V8, multiclass
        clus
vv       C20ORF195 MUTATED C20ORF195 WILD-TYPE
  CLUS_1                 8                 209
  CLUS_2                 1                  74
  CLUS_3                 0                  99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  C20ORF195 MUTATED        2      3      1
  C20ORF195 WILD-TYPE    119    105     71
D1069V9, multiclass
        clus
vv       C20ORF195 MUTATED C20ORF195 WILD-TYPE
  CLUS_1                 2                 119
  CLUS_2                 3                 105
  CLUS_3                 1                  71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C20ORF195 MUTATED        3      2      0      0      1
  C20ORF195 WILD-TYPE     85     64     45     55     46
D1069V10, multiclass
        clus
vv       C20ORF195 MUTATED C20ORF195 WILD-TYPE
  CLUS_1                 3                  85
  CLUS_2                 2                  64
  CLUS_3                 0                  45
  CLUS_4                 0                  55
  CLUS_5                 1                  46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1070) Variable = RERE MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RERE MUTATED        3     19      2      0
  RERE WILD-TYPE    201    118     45      3
D1070V1, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            3            201
  CLUS_2           19            118
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RERE MUTATED        0     13      1      1      1
  RERE WILD-TYPE     39     83     43     87     79
D1070V2, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            0             39
  CLUS_2           13             83
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RERE MUTATED        2      7      6      1      5
  RERE WILD-TYPE     24     72     67     81     53
D1070V3, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            2             24
  CLUS_2            7             72
  CLUS_3            6             67
  CLUS_4            1             81
  CLUS_5            5             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RERE MUTATED        7      9      4      1
  RERE WILD-TYPE    120     42     67     68
D1070V4, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            7            120
  CLUS_2            9             42
  CLUS_3            4             67
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RERE MUTATED        2      0     14      4      4
  RERE WILD-TYPE     82     85     71     65     43
D1070V5, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            2             82
  CLUS_2            0             85
  CLUS_3           14             71
  CLUS_4            4             65
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RERE MUTATED        9      2      2     11
  RERE WILD-TYPE     86     72    119     69
D1070V6, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            9             86
  CLUS_2            2             72
  CLUS_3            2            119
  CLUS_4           11             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RERE MUTATED        4     11      5      1      1      2
  RERE WILD-TYPE     48     53     67    103     39     57
D1070V7, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            4             48
  CLUS_2           11             53
  CLUS_3            5             67
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RERE MUTATED       19      2      3
  RERE WILD-TYPE    198     73     96
D1070V8, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1           19            198
  CLUS_2            2             73
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RERE MUTATED        5      1      9
  RERE WILD-TYPE    116    107     63
D1070V9, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            5            116
  CLUS_2            1            107
  CLUS_3            9             63
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RERE MUTATED        3      0      4      1      7
  RERE WILD-TYPE     85     66     41     54     40
D1070V10, multiclass
        clus
vv       RERE MUTATED RERE WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            4             41
  CLUS_4            1             54
  CLUS_5            7             40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1071) Variable = WFIKKN2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFIKKN2 MUTATED        3     13      0      0
  WFIKKN2 WILD-TYPE    201    124     47      3
D1071V1, multiclass
        clus
vv       WFIKKN2 MUTATED WFIKKN2 WILD-TYPE
  CLUS_1               3               201
  CLUS_2              13               124
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WFIKKN2 MUTATED        0     10      2      1      2
  WFIKKN2 WILD-TYPE     39     86     42     87     78
D1071V2, multiclass
        clus
vv       WFIKKN2 MUTATED WFIKKN2 WILD-TYPE
  CLUS_1               0                39
  CLUS_2              10                86
  CLUS_3               2                42
  CLUS_4               1                87
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WFIKKN2 MUTATED        1      4      4      1      3
  WFIKKN2 WILD-TYPE     25     75     69     81     55
D1071V3, multiclass
        clus
vv       WFIKKN2 MUTATED WFIKKN2 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               4                75
  CLUS_3               4                69
  CLUS_4               1                81
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFIKKN2 MUTATED        6      4      2      1
  WFIKKN2 WILD-TYPE    121     47     69     68
D1071V4, multiclass
        clus
vv       WFIKKN2 MUTATED WFIKKN2 WILD-TYPE
  CLUS_1               6               121
  CLUS_2               4                47
  CLUS_3               2                69
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WFIKKN2 MUTATED        1      2      5      6      2
  WFIKKN2 WILD-TYPE     83     83     80     63     45
D1071V5, multiclass
        clus
vv       WFIKKN2 MUTATED WFIKKN2 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               2                83
  CLUS_3               5                80
  CLUS_4               6                63
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WFIKKN2 MUTATED        5      2      3      6
  WFIKKN2 WILD-TYPE     90     72    118     74
D1071V6, multiclass
        clus
vv       WFIKKN2 MUTATED WFIKKN2 WILD-TYPE
  CLUS_1               5                90
  CLUS_2               2                72
  CLUS_3               3               118
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WFIKKN2 MUTATED        6      2      4      2      1      1
  WFIKKN2 WILD-TYPE     46     62     68    102     39     58
D1071V7, multiclass
        clus
vv       WFIKKN2 MUTATED WFIKKN2 WILD-TYPE
  CLUS_1               6                46
  CLUS_2               2                62
  CLUS_3               4                68
  CLUS_4               2               102
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  WFIKKN2 MUTATED       12      2      2
  WFIKKN2 WILD-TYPE    205     73     97
D1071V8, multiclass
        clus
vv       WFIKKN2 MUTATED WFIKKN2 WILD-TYPE
  CLUS_1              12               205
  CLUS_2               2                73
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  WFIKKN2 MUTATED       11      2      2
  WFIKKN2 WILD-TYPE    110    106     70
D1071V9, multiclass
        clus
vv       WFIKKN2 MUTATED WFIKKN2 WILD-TYPE
  CLUS_1              11               110
  CLUS_2               2               106
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WFIKKN2 MUTATED        3      1      1      1      9
  WFIKKN2 WILD-TYPE     85     65     44     54     38
D1071V10, multiclass
        clus
vv       WFIKKN2 MUTATED WFIKKN2 WILD-TYPE
  CLUS_1               3                85
  CLUS_2               1                65
  CLUS_3               1                44
  CLUS_4               1                54
  CLUS_5               9                38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1072) Variable = OR1L3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1L3 MUTATED        3      4      0      0
  OR1L3 WILD-TYPE    201    133     47      3
D1072V1, multiclass
        clus
vv       OR1L3 MUTATED OR1L3 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             4             133
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR1L3 MUTATED        3      3      0      0      0
  OR1L3 WILD-TYPE     36     93     44     88     80
D1072V2, multiclass
        clus
vv       OR1L3 MUTATED OR1L3 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR1L3 MUTATED        0      1      1      1      2
  OR1L3 WILD-TYPE     26     78     72     81     56
D1072V3, multiclass
        clus
vv       OR1L3 MUTATED OR1L3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1L3 MUTATED        1      2      1      1
  OR1L3 WILD-TYPE    126     49     70     68
D1072V4, multiclass
        clus
vv       OR1L3 MUTATED OR1L3 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             2              49
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR1L3 MUTATED        0      0      3      3      1
  OR1L3 WILD-TYPE     84     85     82     66     46
D1072V5, multiclass
        clus
vv       OR1L3 MUTATED OR1L3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OR1L3 MUTATED        3      0      0      4
  OR1L3 WILD-TYPE     92     74    121     76
D1072V6, multiclass
        clus
vv       OR1L3 MUTATED OR1L3 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OR1L3 MUTATED        5      0      1      1      0      0
  OR1L3 WILD-TYPE     47     64     71    103     40     59
D1072V7, multiclass
        clus
vv       OR1L3 MUTATED OR1L3 WILD-TYPE
  CLUS_1             5              47
  CLUS_2             0              64
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1L3 MUTATED        7      0      0
  OR1L3 WILD-TYPE    210     75     99
D1072V8, multiclass
        clus
vv       OR1L3 MUTATED OR1L3 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OR1L3 MUTATED        5      0      0
  OR1L3 WILD-TYPE    116    108     72
D1072V9, multiclass
        clus
vv       OR1L3 MUTATED OR1L3 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             0             108
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OR1L3 MUTATED        4      0      0      0      1
  OR1L3 WILD-TYPE     84     66     45     55     46
D1072V10, multiclass
        clus
vv       OR1L3 MUTATED OR1L3 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1073) Variable = MORC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC1 MUTATED        5      7      1      0
  MORC1 WILD-TYPE    199    130     46      3
D1073V1, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             5             199
  CLUS_2             7             130
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MORC1 MUTATED        1      6      0      1      2
  MORC1 WILD-TYPE     38     90     44     87     78
D1073V2, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MORC1 MUTATED        2      3      2      0      4
  MORC1 WILD-TYPE     24     76     71     82     54
D1073V3, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             3              76
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC1 MUTATED        3      6      1      1
  MORC1 WILD-TYPE    124     45     70     68
D1073V4, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             6              45
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MORC1 MUTATED        0      1      7      2      3
  MORC1 WILD-TYPE     84     84     78     67     44
D1073V5, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             7              78
  CLUS_4             2              67
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MORC1 MUTATED        5      0      2      6
  MORC1 WILD-TYPE     90     74    119     74
D1073V6, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             0              74
  CLUS_3             2             119
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MORC1 MUTATED        3      5      3      0      2      0
  MORC1 WILD-TYPE     49     59     69    104     38     59
D1073V7, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             5              59
  CLUS_3             3              69
  CLUS_4             0             104
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MORC1 MUTATED       12      1      0
  MORC1 WILD-TYPE    205     74     99
D1073V8, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             1              74
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MORC1 MUTATED        6      0      3
  MORC1 WILD-TYPE    115    108     69
D1073V9, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             0             108
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MORC1 MUTATED        4      0      3      0      2
  MORC1 WILD-TYPE     84     66     42     55     45
D1073V10, multiclass
        clus
vv       MORC1 MUTATED MORC1 WILD-TYPE
  CLUS_1             4              84
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1074) Variable = AP3B1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3B1 MUTATED        1      7      1      0
  AP3B1 WILD-TYPE    203    130     46      3
D1074V1, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             7             130
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP3B1 MUTATED        1      5      1      1      0
  AP3B1 WILD-TYPE     38     91     43     87     80
D1074V2, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP3B1 MUTATED        1      4      0      0      4
  AP3B1 WILD-TYPE     25     75     73     82     54
D1074V3, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             0              73
  CLUS_4             0              82
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3B1 MUTATED        1      5      2      1
  AP3B1 WILD-TYPE    126     46     69     68
D1074V4, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             5              46
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP3B1 MUTATED        1      0      5      1      1
  AP3B1 WILD-TYPE     83     85     80     68     46
D1074V5, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AP3B1 MUTATED        1      1      1      5
  AP3B1 WILD-TYPE     94     73    120     75
D1074V6, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AP3B1 MUTATED        3      3      2      1      0      0
  AP3B1 WILD-TYPE     49     61     70    103     40     59
D1074V7, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             3              61
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3B1 MUTATED        8      0      1
  AP3B1 WILD-TYPE    209     75     98
D1074V8, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  AP3B1 MUTATED        3      2      3
  AP3B1 WILD-TYPE    118    106     69
D1074V9, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AP3B1 MUTATED        3      0      2      1      2
  AP3B1 WILD-TYPE     85     66     43     54     45
D1074V10, multiclass
        clus
vv       AP3B1 MUTATED AP3B1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1075) Variable = OSBPL6 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL6 MUTATED        6      7      5      0
  OSBPL6 WILD-TYPE    198    130     42      3
D1075V1, multiclass
        clus
vv       OSBPL6 MUTATED OSBPL6 WILD-TYPE
  CLUS_1              6              198
  CLUS_2              7              130
  CLUS_3              5               42
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBPL6 MUTATED        3      5      4      2      3
  OSBPL6 WILD-TYPE     36     91     40     86     77
D1075V2, multiclass
        clus
vv       OSBPL6 MUTATED OSBPL6 WILD-TYPE
  CLUS_1              3               36
  CLUS_2              5               91
  CLUS_3              4               40
  CLUS_4              2               86
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBPL6 MUTATED        0      4      6      2      4
  OSBPL6 WILD-TYPE     26     75     67     80     54
D1075V3, multiclass
        clus
vv       OSBPL6 MUTATED OSBPL6 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              6               67
  CLUS_4              2               80
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL6 MUTATED        7      6      2      1
  OSBPL6 WILD-TYPE    120     45     69     68
D1075V4, multiclass
        clus
vv       OSBPL6 MUTATED OSBPL6 WILD-TYPE
  CLUS_1              7              120
  CLUS_2              6               45
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBPL6 MUTATED        2      5      6      2      2
  OSBPL6 WILD-TYPE     82     80     79     67     45
D1075V5, multiclass
        clus
vv       OSBPL6 MUTATED OSBPL6 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              5               80
  CLUS_3              6               79
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSBPL6 MUTATED        4      2      4      7
  OSBPL6 WILD-TYPE     91     72    117     73
D1075V6, multiclass
        clus
vv       OSBPL6 MUTATED OSBPL6 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              2               72
  CLUS_3              4              117
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OSBPL6 MUTATED        3      2      6      4      1      2
  OSBPL6 WILD-TYPE     49     62     66    100     39     57
D1075V7, multiclass
        clus
vv       OSBPL6 MUTATED OSBPL6 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              2               62
  CLUS_3              6               66
  CLUS_4              4              100
  CLUS_5              1               39
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OSBPL6 MUTATED       13      2      3
  OSBPL6 WILD-TYPE    204     73     96
D1075V8, multiclass
        clus
vv       OSBPL6 MUTATED OSBPL6 WILD-TYPE
  CLUS_1             13              204
  CLUS_2              2               73
  CLUS_3              3               96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  OSBPL6 MUTATED        6      3      4
  OSBPL6 WILD-TYPE    115    105     68
D1075V9, multiclass
        clus
vv       OSBPL6 MUTATED OSBPL6 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              3              105
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSBPL6 MUTATED        3      3      2      2      3
  OSBPL6 WILD-TYPE     85     63     43     53     44
D1075V10, multiclass
        clus
vv       OSBPL6 MUTATED OSBPL6 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              3               63
  CLUS_3              2               43
  CLUS_4              2               53
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1076) Variable = EFHC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHC1 MUTATED        2      8      0      0
  EFHC1 WILD-TYPE    202    129     47      3
D1076V1, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             8             129
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHC1 MUTATED        0      6      1      1      1
  EFHC1 WILD-TYPE     39     90     43     87     79
D1076V2, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             6              90
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHC1 MUTATED        1      3      3      0      0
  EFHC1 WILD-TYPE     25     76     70     82     58
D1076V3, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHC1 MUTATED        1      3      3      0
  EFHC1 WILD-TYPE    126     48     68     69
D1076V4, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             3              48
  CLUS_3             3              68
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHC1 MUTATED        1      2      6      1      0
  EFHC1 WILD-TYPE     83     83     79     68     47
D1076V5, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EFHC1 MUTATED        3      2      2      3
  EFHC1 WILD-TYPE     92     72    119     77
D1076V6, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EFHC1 MUTATED        2      3      4      1      0      0
  EFHC1 WILD-TYPE     50     61     68    103     40     59
D1076V7, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             4              68
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHC1 MUTATED        7      1      2
  EFHC1 WILD-TYPE    210     74     97
D1076V8, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EFHC1 MUTATED        2      1      4
  EFHC1 WILD-TYPE    119    107     68
D1076V9, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EFHC1 MUTATED        0      1      2      0      4
  EFHC1 WILD-TYPE     88     65     43     55     43
D1076V10, multiclass
        clus
vv       EFHC1 MUTATED EFHC1 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1077) Variable = DTNBP1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DTNBP1 MUTATED        1      4      1      0
  DTNBP1 WILD-TYPE    203    133     46      3
D1077V1, multiclass
        clus
vv       DTNBP1 MUTATED DTNBP1 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              4              133
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DTNBP1 MUTATED        0      1      3      0      0
  DTNBP1 WILD-TYPE     39     95     41     88     80
D1077V2, multiclass
        clus
vv       DTNBP1 MUTATED DTNBP1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              1               95
  CLUS_3              3               41
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DTNBP1 MUTATED        0      2      1      1      2
  DTNBP1 WILD-TYPE     26     77     72     81     56
D1077V3, multiclass
        clus
vv       DTNBP1 MUTATED DTNBP1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DTNBP1 MUTATED        1      1      1      3
  DTNBP1 WILD-TYPE    126     50     70     66
D1077V4, multiclass
        clus
vv       DTNBP1 MUTATED DTNBP1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              1               50
  CLUS_3              1               70
  CLUS_4              3               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DTNBP1 MUTATED        0      3      3      0      0
  DTNBP1 WILD-TYPE     84     82     82     69     47
D1077V5, multiclass
        clus
vv       DTNBP1 MUTATED DTNBP1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DTNBP1 MUTATED        2      2      1      1
  DTNBP1 WILD-TYPE     93     72    120     79
D1077V6, multiclass
        clus
vv       DTNBP1 MUTATED DTNBP1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DTNBP1 MUTATED        0      4      1      0      1      0
  DTNBP1 WILD-TYPE     52     60     71    104     39     59
D1077V7, multiclass
        clus
vv       DTNBP1 MUTATED DTNBP1 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DTNBP1 MUTATED        5      0      1
  DTNBP1 WILD-TYPE    212     75     98
D1077V8, multiclass
        clus
vv       DTNBP1 MUTATED DTNBP1 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  DTNBP1 MUTATED        1      0      3
  DTNBP1 WILD-TYPE    120    108     69
D1077V9, multiclass
        clus
vv       DTNBP1 MUTATED DTNBP1 WILD-TYPE
  CLUS_1              1              120
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DTNBP1 MUTATED        2      0      2      0      0
  DTNBP1 WILD-TYPE     86     66     43     55     47
D1077V10, multiclass
        clus
vv       DTNBP1 MUTATED DTNBP1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1078) Variable = KCNH1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH1 MUTATED        4     13      3      0
  KCNH1 WILD-TYPE    200    124     44      3
D1078V1, multiclass
        clus
vv       KCNH1 MUTATED KCNH1 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            13             124
  CLUS_3             3              44
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH1 MUTATED        3     10      3      2      0
  KCNH1 WILD-TYPE     36     86     41     86     80
D1078V2, multiclass
        clus
vv       KCNH1 MUTATED KCNH1 WILD-TYPE
  CLUS_1             3              36
  CLUS_2            10              86
  CLUS_3             3              41
  CLUS_4             2              86
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH1 MUTATED        0      9      3      2      4
  KCNH1 WILD-TYPE     26     70     70     80     54
D1078V3, multiclass
        clus
vv       KCNH1 MUTATED KCNH1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             9              70
  CLUS_3             3              70
  CLUS_4             2              80
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH1 MUTATED        3      8      5      2
  KCNH1 WILD-TYPE    124     43     66     67
D1078V4, multiclass
        clus
vv       KCNH1 MUTATED KCNH1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             8              43
  CLUS_3             5              66
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH1 MUTATED        2      1      9      4      3
  KCNH1 WILD-TYPE     82     84     76     65     44
D1078V5, multiclass
        clus
vv       KCNH1 MUTATED KCNH1 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             1              84
  CLUS_3             9              76
  CLUS_4             4              65
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNH1 MUTATED        7      2      3      7
  KCNH1 WILD-TYPE     88     72    118     73
D1078V6, multiclass
        clus
vv       KCNH1 MUTATED KCNH1 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             2              72
  CLUS_3             3             118
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNH1 MUTATED        6      3      4      2      3      1
  KCNH1 WILD-TYPE     46     61     68    102     37     58
D1078V7, multiclass
        clus
vv       KCNH1 MUTATED KCNH1 WILD-TYPE
  CLUS_1             6              46
  CLUS_2             3              61
  CLUS_3             4              68
  CLUS_4             2             102
  CLUS_5             3              37
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH1 MUTATED       16      0      3
  KCNH1 WILD-TYPE    201     75     96
D1078V8, multiclass
        clus
vv       KCNH1 MUTATED KCNH1 WILD-TYPE
  CLUS_1            16             201
  CLUS_2             0              75
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNH1 MUTATED       10      3      2
  KCNH1 WILD-TYPE    111    105     70
D1078V9, multiclass
        clus
vv       KCNH1 MUTATED KCNH1 WILD-TYPE
  CLUS_1            10             111
  CLUS_2             3             105
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNH1 MUTATED        7      0      1      1      6
  KCNH1 WILD-TYPE     81     66     44     54     41
D1078V10, multiclass
        clus
vv       KCNH1 MUTATED KCNH1 WILD-TYPE
  CLUS_1             7              81
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1079) Variable = BBS10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BBS10 MUTATED        0      8      1      0
  BBS10 WILD-TYPE    204    129     46      3
D1079V1, multiclass
        clus
vv       BBS10 MUTATED BBS10 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BBS10 MUTATED        0      4      1      0      1
  BBS10 WILD-TYPE     39     92     43     88     79
D1079V2, multiclass
        clus
vv       BBS10 MUTATED BBS10 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BBS10 MUTATED        1      3      1      1      1
  BBS10 WILD-TYPE     25     76     72     81     57
D1079V3, multiclass
        clus
vv       BBS10 MUTATED BBS10 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BBS10 MUTATED        1      5      0      1
  BBS10 WILD-TYPE    126     46     71     68
D1079V4, multiclass
        clus
vv       BBS10 MUTATED BBS10 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             5              46
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BBS10 MUTATED        0      2      5      1      0
  BBS10 WILD-TYPE     84     83     80     68     47
D1079V5, multiclass
        clus
vv       BBS10 MUTATED BBS10 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BBS10 MUTATED        1      3      0      4
  BBS10 WILD-TYPE     94     71    121     76
D1079V6, multiclass
        clus
vv       BBS10 MUTATED BBS10 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             3              71
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BBS10 MUTATED        2      3      2      2      0      0
  BBS10 WILD-TYPE     50     61     70    102     40     59
D1079V7, multiclass
        clus
vv       BBS10 MUTATED BBS10 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             3              61
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BBS10 MUTATED        7      2      0
  BBS10 WILD-TYPE    210     73     99
D1079V8, multiclass
        clus
vv       BBS10 MUTATED BBS10 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             2              73
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BBS10 MUTATED        4      0      1
  BBS10 WILD-TYPE    117    108     71
D1079V9, multiclass
        clus
vv       BBS10 MUTATED BBS10 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             0             108
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BBS10 MUTATED        1      0      1      0      3
  BBS10 WILD-TYPE     87     66     44     55     44
D1079V10, multiclass
        clus
vv       BBS10 MUTATED BBS10 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1080) Variable = SMARCC2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCC2 MUTATED        5     11      2      0
  SMARCC2 WILD-TYPE    199    126     45      3
D1080V1, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               5               199
  CLUS_2              11               126
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCC2 MUTATED        0      4      3      3      4
  SMARCC2 WILD-TYPE     39     92     41     85     76
D1080V2, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               4                92
  CLUS_3               3                41
  CLUS_4               3                85
  CLUS_5               4                76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCC2 MUTATED        3      2      2      0      6
  SMARCC2 WILD-TYPE     23     77     71     82     52
D1080V3, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               3                23
  CLUS_2               2                77
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               6                52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCC2 MUTATED        6      2      1      4
  SMARCC2 WILD-TYPE    121     49     70     65
D1080V4, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               6               121
  CLUS_2               2                49
  CLUS_3               1                70
  CLUS_4               4                65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCC2 MUTATED        7      3      6      1      0
  SMARCC2 WILD-TYPE     77     82     79     68     47
D1080V5, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               7                77
  CLUS_2               3                82
  CLUS_3               6                79
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMARCC2 MUTATED        3      3      7      4
  SMARCC2 WILD-TYPE     92     71    114     76
D1080V6, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               3                71
  CLUS_3               7               114
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMARCC2 MUTATED        2      6      3      2      1      4
  SMARCC2 WILD-TYPE     50     58     69    102     39     55
D1080V7, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               6                58
  CLUS_3               3                69
  CLUS_4               2               102
  CLUS_5               1                39
  CLUS_6               4                55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCC2 MUTATED        9      2      7
  SMARCC2 WILD-TYPE    208     73     92
D1080V8, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               9               208
  CLUS_2               2                73
  CLUS_3               7                92
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SMARCC2 MUTATED        7      3      3
  SMARCC2 WILD-TYPE    114    105     69
D1080V9, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               7               114
  CLUS_2               3               105
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMARCC2 MUTATED        5      1      1      4      2
  SMARCC2 WILD-TYPE     83     65     44     51     45
D1080V10, multiclass
        clus
vv       SMARCC2 MUTATED SMARCC2 WILD-TYPE
  CLUS_1               5                83
  CLUS_2               1                65
  CLUS_3               1                44
  CLUS_4               4                51
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1081) Variable = NRK MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRK MUTATED       12     13      1      0
  NRK WILD-TYPE    192    124     46      3
D1081V1, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1          12           192
  CLUS_2          13           124
  CLUS_3           1            46
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRK MUTATED        1     10      4      4      1
  NRK WILD-TYPE     38     86     40     84     79
D1081V2, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           1            38
  CLUS_2          10            86
  CLUS_3           4            40
  CLUS_4           4            84
  CLUS_5           1            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRK MUTATED        2      8      8      0      4
  NRK WILD-TYPE     24     71     65     82     54
D1081V3, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           2            24
  CLUS_2           8            71
  CLUS_3           8            65
  CLUS_4           0            82
  CLUS_5           4            54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRK MUTATED        8      8      3      3
  NRK WILD-TYPE    119     43     68     66
D1081V4, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           8           119
  CLUS_2           8            43
  CLUS_3           3            68
  CLUS_4           3            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRK MUTATED        4      3     10      3      6
  NRK WILD-TYPE     80     82     75     66     41
D1081V5, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           4            80
  CLUS_2           3            82
  CLUS_3          10            75
  CLUS_4           3            66
  CLUS_5           6            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRK MUTATED        5      2      5     14
  NRK WILD-TYPE     90     72    116     66
D1081V6, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           5            90
  CLUS_2           2            72
  CLUS_3           5           116
  CLUS_4          14            66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NRK MUTATED        6      8      5      1      2      3
  NRK WILD-TYPE     46     56     67    103     38     56
D1081V7, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           6            46
  CLUS_2           8            56
  CLUS_3           5            67
  CLUS_4           1           103
  CLUS_5           2            38
  CLUS_6           3            56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NRK MUTATED       19      0      6
  NRK WILD-TYPE    198     75     93
D1081V8, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1          19           198
  CLUS_2           0            75
  CLUS_3           6            93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NRK MUTATED       11      1      4
  NRK WILD-TYPE    110    107     68
D1081V9, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1          11           110
  CLUS_2           1           107
  CLUS_3           4            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRK MUTATED        6      0      2      2      6
  NRK WILD-TYPE     82     66     43     53     41
D1081V10, multiclass
        clus
vv       NRK MUTATED NRK WILD-TYPE
  CLUS_1           6            82
  CLUS_2           0            66
  CLUS_3           2            43
  CLUS_4           2            53
  CLUS_5           6            41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1082) Variable = WBP11 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WBP11 MUTATED        0      4      1      0
  WBP11 WILD-TYPE    204    133     46      3
D1082V1, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             4             133
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WBP11 MUTATED        0      2      0      1      1
  WBP11 WILD-TYPE     39     94     44     87     79
D1082V2, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             2              94
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WBP11 MUTATED        1      2      1      0      0
  WBP11 WILD-TYPE     25     77     72     82     58
D1082V3, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WBP11 MUTATED        2      2      0      0
  WBP11 WILD-TYPE    125     49     71     69
D1082V4, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             2              49
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WBP11 MUTATED        1      0      0      1      2
  WBP11 WILD-TYPE     83     85     85     68     45
D1082V5, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             0              85
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WBP11 MUTATED        2      0      0      2
  WBP11 WILD-TYPE     93     74    121     78
D1082V6, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WBP11 MUTATED        1      0      2      1      0      1
  WBP11 WILD-TYPE     51     64     70    103     40     58
D1082V7, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             0              64
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WBP11 MUTATED        4      0      1
  WBP11 WILD-TYPE    213     75     98
D1082V8, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  WBP11 MUTATED        2      0      2
  WBP11 WILD-TYPE    119    108     70
D1082V9, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WBP11 MUTATED        0      0      1      0      3
  WBP11 WILD-TYPE     88     66     44     55     44
D1082V10, multiclass
        clus
vv       WBP11 MUTATED WBP11 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1083) Variable = WSB2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WSB2 MUTATED        1      8      0      0
  WSB2 WILD-TYPE    203    129     47      3
D1083V1, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            1            203
  CLUS_2            8            129
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WSB2 MUTATED        0      4      3      0      1
  WSB2 WILD-TYPE     39     92     41     88     79
D1083V2, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            3             41
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WSB2 MUTATED        0      6      3      0      0
  WSB2 WILD-TYPE     26     73     70     82     58
D1083V3, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            6             73
  CLUS_3            3             70
  CLUS_4            0             82
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WSB2 MUTATED        0      6      3      0
  WSB2 WILD-TYPE    127     45     68     69
D1083V4, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            6             45
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WSB2 MUTATED        0      0      5      1      3
  WSB2 WILD-TYPE     84     85     80     68     44
D1083V5, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            5             80
  CLUS_4            1             68
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WSB2 MUTATED        2      0      2      5
  WSB2 WILD-TYPE     93     74    119     75
D1083V6, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            0             74
  CLUS_3            2            119
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  WSB2 MUTATED        2      5      2      0      0      0
  WSB2 WILD-TYPE     50     59     70    104     40     59
D1083V7, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            5             59
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WSB2 MUTATED        8      1      0
  WSB2 WILD-TYPE    209     74     99
D1083V8, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            8            209
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WSB2 MUTATED        2      0      5
  WSB2 WILD-TYPE    119    108     67
D1083V9, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            0            108
  CLUS_3            5             67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  WSB2 MUTATED        2      0      4      0      1
  WSB2 WILD-TYPE     86     66     41     55     46
D1083V10, multiclass
        clus
vv       WSB2 MUTATED WSB2 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            4             41
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1084) Variable = SET MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SET MUTATED        2      5      0      0
  SET WILD-TYPE    202    132     47      3
D1084V1, multiclass
        clus
vv       SET MUTATED SET WILD-TYPE
  CLUS_1           2           202
  CLUS_2           5           132
  CLUS_3           0            47
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SET MUTATED        2      2      1      0      0
  SET WILD-TYPE     37     94     43     88     80
D1084V2, multiclass
        clus
vv       SET MUTATED SET WILD-TYPE
  CLUS_1           2            37
  CLUS_2           2            94
  CLUS_3           1            43
  CLUS_4           0            88
  CLUS_5           0            80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SET MUTATED        1      2      1      0      2
  SET WILD-TYPE     25     77     72     82     56
D1084V3, multiclass
        clus
vv       SET MUTATED SET WILD-TYPE
  CLUS_1           1            25
  CLUS_2           2            77
  CLUS_3           1            72
  CLUS_4           0            82
  CLUS_5           2            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SET MUTATED        3      1      2      0
  SET WILD-TYPE    124     50     69     69
D1084V4, multiclass
        clus
vv       SET MUTATED SET WILD-TYPE
  CLUS_1           3           124
  CLUS_2           1            50
  CLUS_3           2            69
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SET MUTATED        1      0      3      2      0
  SET WILD-TYPE     83     85     82     67     47
D1084V5, multiclass
        clus
vv       SET MUTATED SET WILD-TYPE
  CLUS_1           1            83
  CLUS_2           0            85
  CLUS_3           3            82
  CLUS_4           2            67
  CLUS_5           0            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SET MUTATED        4      0      0      2
  SET WILD-TYPE     91     74    121     78
D1084V6, multiclass
        clus
vv       SET MUTATED SET WILD-TYPE
  CLUS_1           4            91
  CLUS_2           0            74
  CLUS_3           0           121
  CLUS_4           2            78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SET MUTATED        2      1      2      1      0      1
  SET WILD-TYPE     50     63     70    103     40     58
D1084V7, multiclass
        clus
vv       SET MUTATED SET WILD-TYPE
  CLUS_1           2            50
  CLUS_2           1            63
  CLUS_3           2            70
  CLUS_4           1           103
  CLUS_5           0            40
  CLUS_6           1            58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SET MUTATED        4      1      2
  SET WILD-TYPE    213     74     97
D1084V8, multiclass
        clus
vv       SET MUTATED SET WILD-TYPE
  CLUS_1           4           213
  CLUS_2           1            74
  CLUS_3           2            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  SET MUTATED        2      1      1
  SET WILD-TYPE    119    107     71
D1084V9, multiclass
        clus
vv       SET MUTATED SET WILD-TYPE
  CLUS_1           2           119
  CLUS_2           1           107
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SET MUTATED        1      1      0      0      2
  SET WILD-TYPE     87     65     45     55     45
D1084V10, multiclass
        clus
vv       SET MUTATED SET WILD-TYPE
  CLUS_1           1            87
  CLUS_2           1            65
  CLUS_3           0            45
  CLUS_4           0            55
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1085) Variable = CASC5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC5 MUTATED        9     11      1      0
  CASC5 WILD-TYPE    195    126     46      3
D1085V1, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             9             195
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASC5 MUTATED        3      5      3      6      0
  CASC5 WILD-TYPE     36     91     41     82     80
D1085V2, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             5              91
  CLUS_3             3              41
  CLUS_4             6              82
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASC5 MUTATED        0      4      5      4      4
  CASC5 WILD-TYPE     26     75     68     78     54
D1085V3, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             5              68
  CLUS_4             4              78
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC5 MUTATED        3      7      5      2
  CASC5 WILD-TYPE    124     44     66     67
D1085V4, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             7              44
  CLUS_3             5              66
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASC5 MUTATED        5      4      7      2      2
  CASC5 WILD-TYPE     79     81     78     67     45
D1085V5, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             5              79
  CLUS_2             4              81
  CLUS_3             7              78
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CASC5 MUTATED        4      2      6      8
  CASC5 WILD-TYPE     91     72    115     72
D1085V6, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             6             115
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CASC5 MUTATED        3      7      4      2      0      5
  CASC5 WILD-TYPE     49     57     68    102     40     54
D1085V7, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             7              57
  CLUS_3             4              68
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             5              54
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASC5 MUTATED       15      1      5
  CASC5 WILD-TYPE    202     74     94
D1085V8, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1            15             202
  CLUS_2             1              74
  CLUS_3             5              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CASC5 MUTATED        8      4      3
  CASC5 WILD-TYPE    113    104     69
D1085V9, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             8             113
  CLUS_2             4             104
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CASC5 MUTATED        5      1      3      4      2
  CASC5 WILD-TYPE     83     65     42     51     45
D1085V10, multiclass
        clus
vv       CASC5 MUTATED CASC5 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             4              51
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1086) Variable = BEND5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEND5 MUTATED        0      4      2      0
  BEND5 WILD-TYPE    204    133     45      3
D1086V1, multiclass
        clus
vv       BEND5 MUTATED BEND5 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             4             133
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BEND5 MUTATED        1      0      1      1      0
  BEND5 WILD-TYPE     38     96     43     87     80
D1086V2, multiclass
        clus
vv       BEND5 MUTATED BEND5 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             0              96
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BEND5 MUTATED        2      3      0      0      1
  BEND5 WILD-TYPE     24     76     73     82     57
D1086V3, multiclass
        clus
vv       BEND5 MUTATED BEND5 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             3              76
  CLUS_3             0              73
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEND5 MUTATED        3      1      2      0
  BEND5 WILD-TYPE    124     50     69     69
D1086V4, multiclass
        clus
vv       BEND5 MUTATED BEND5 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             1              50
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BEND5 MUTATED        1      2      2      0      0
  BEND5 WILD-TYPE     83     83     83     69     47
D1086V5, multiclass
        clus
vv       BEND5 MUTATED BEND5 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             2              83
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BEND5 MUTATED        1      1      0      3
  BEND5 WILD-TYPE     94     73    121     77
D1086V6, multiclass
        clus
vv       BEND5 MUTATED BEND5 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  BEND5 MUTATED        0      3      0      2      0      1
  BEND5 WILD-TYPE     52     61     72    102     40     58
D1086V7, multiclass
        clus
vv       BEND5 MUTATED BEND5 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             3              61
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BEND5 MUTATED        4      0      2
  BEND5 WILD-TYPE    213     75     97
D1086V8, multiclass
        clus
vv       BEND5 MUTATED BEND5 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  BEND5 MUTATED        0      1      1
  BEND5 WILD-TYPE    121    107     71
D1086V9, multiclass
[1] "Remove cluster labels:" "BEND5 MUTATED"         
clus
  BEND5 MUTATED BEND5 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7901      TCGA-BR-7957 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5728      TCGA-CG-5730 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-FP-A9TM 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134      TCGA-HF-7136 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-IN-7806 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BEND5 MUTATED        1      0      1      0      0
  BEND5 WILD-TYPE     87     66     44     55     47
D1086V10, multiclass
[1] "Remove cluster labels:" "BEND5 MUTATED"         
clus
  BEND5 MUTATED BEND5 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7901      TCGA-BR-7957 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289      TCGA-BR-8291 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360      TCGA-BR-8361 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365      TCGA-BR-8368 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485      TCGA-BR-8486 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590      TCGA-BR-8591 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A452 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI      TCGA-BR-A4QL 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CD-A48C      TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5728      TCGA-CG-5730 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734      TCGA-D7-5577 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518      TCGA-D7-6519 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522      TCGA-D7-6524 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527      TCGA-D7-6528 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8574 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578      TCGA-D7-8579 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YY 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177      TCGA-F1-6874 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735      TCGA-FP-7829 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209      TCGA-FP-8210 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A4BE      TCGA-FP-A9TM 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134      TCGA-HF-7136 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-IN-7806 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"BEND5 WILD-TYPE" "BEND5 WILD-TYPE" "BEND5 WILD-TYPE" 

Clustering(1087) Variable = FGF22 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGF22 MUTATED        0      4      0      0
  FGF22 WILD-TYPE    204    133     47      3
D1087V1, multiclass
        clus
vv       FGF22 MUTATED FGF22 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             4             133
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF22 MUTATED        0      4      0      0      0
  FGF22 WILD-TYPE     39     92     44     88     80
D1087V2, multiclass
        clus
vv       FGF22 MUTATED FGF22 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF22 MUTATED        0      1      1      0      0
  FGF22 WILD-TYPE     26     78     72     82     58
D1087V3, multiclass
[1] "Remove cluster labels:" "FGF22 MUTATED"         
clus
  FGF22 MUTATED FGF22 WILD-TYPE 
              2             316 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-4183      TCGA-BR-4184 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-7704      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8080      TCGA-BR-8081 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-A486      TCGA-CD-A487 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4460      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A748      TCGA-EQ-8122 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7916      TCGA-FP-7998 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HJ-7597      TCGA-HU-8602      TCGA-HU-8608 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4GF      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4HD 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RO 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-IN-A6RR      TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-IN-A7NU      TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-KB-A6F5      TCGA-KB-A93G      TCGA-MX-A5UG      TCGA-RD-A7BS 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-RD-A7BT      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-SW-A7EA 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-AA64 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGF22 MUTATED        0      2      0      0
  FGF22 WILD-TYPE    127     49     71     69
D1087V4, multiclass
[1] "Remove cluster labels:" "FGF22 MUTATED"         
clus
  FGF22 MUTATED FGF22 WILD-TYPE 
              2             316 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-4183      TCGA-BR-4184 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-7704      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8080      TCGA-BR-8081 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-A486      TCGA-CD-A487 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MG 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ      TCGA-CG-4300 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305      TCGA-CG-4306 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438      TCGA-CG-4442 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449      TCGA-CG-4455 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4460      TCGA-CG-4465      TCGA-CG-4466      TCGA-CG-4469 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476      TCGA-CG-4477 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723      TCGA-CG-5724 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6527      TCGA-D7-6528 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818      TCGA-D7-6820 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572      TCGA-D7-8573 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8578      TCGA-D7-A4YT 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-A4Z0      TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A748      TCGA-EQ-8122 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874      TCGA-F1-6875 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7916      TCGA-FP-7998 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HJ-7597      TCGA-HU-8602      TCGA-HU-8608 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4GF      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4HD 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RO 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-IN-A6RR      TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-IN-A7NU      TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-KB-A6F5      TCGA-KB-A93G      TCGA-MX-A5UG      TCGA-RD-A7BS 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-RD-A7BT      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-SW-A7EA 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-AA64 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" "FGF22 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF22 MUTATED        0      0      3      1      0
  FGF22 WILD-TYPE     84     85     82     68     47
D1087V5, multiclass
        clus
vv       FGF22 MUTATED FGF22 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FGF22 MUTATED        2      0      0      2
  FGF22 WILD-TYPE     93     74    121     78
D1087V6, multiclass
        clus
vv       FGF22 MUTATED FGF22 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FGF22 MUTATED        3      0      1      0      0      0
  FGF22 WILD-TYPE     49     64     71    104     40     59
D1087V7, multiclass
        clus
vv       FGF22 MUTATED FGF22 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             0              64
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF22 MUTATED        3      0      1
  FGF22 WILD-TYPE    214     75     98
D1087V8, multiclass
        clus
vv       FGF22 MUTATED FGF22 WILD-TYPE
  CLUS_1             3             214
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  FGF22 MUTATED        2      0      1
  FGF22 WILD-TYPE    119    108     71
D1087V9, multiclass
        clus
vv       FGF22 MUTATED FGF22 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FGF22 MUTATED        0      0      0      0      3
  FGF22 WILD-TYPE     88     66     45     55     44
D1087V10, multiclass
        clus
vv       FGF22 MUTATED FGF22 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1088) Variable = EIF2AK3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2AK3 MUTATED        8     10      1      0
  EIF2AK3 WILD-TYPE    196    127     46      3
D1088V1, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               8               196
  CLUS_2              10               127
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF2AK3 MUTATED        1      6      3      4      2
  EIF2AK3 WILD-TYPE     38     90     41     84     78
D1088V2, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               6                90
  CLUS_3               3                41
  CLUS_4               4                84
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF2AK3 MUTATED        1      5      5      1      3
  EIF2AK3 WILD-TYPE     25     74     68     81     55
D1088V3, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               5                74
  CLUS_3               5                68
  CLUS_4               1                81
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2AK3 MUTATED        4      8      2      1
  EIF2AK3 WILD-TYPE    123     43     69     68
D1088V4, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               4               123
  CLUS_2               8                43
  CLUS_3               2                69
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF2AK3 MUTATED        1      0     10      1      4
  EIF2AK3 WILD-TYPE     83     85     75     68     43
D1088V5, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                85
  CLUS_3              10                75
  CLUS_4               1                68
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF2AK3 MUTATED        5      2      2      7
  EIF2AK3 WILD-TYPE     90     72    119     73
D1088V6, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               5                90
  CLUS_2               2                72
  CLUS_3               2               119
  CLUS_4               7                73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EIF2AK3 MUTATED        3      7      4      3      0      2
  EIF2AK3 WILD-TYPE     49     57     68    101     40     57
D1088V7, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               7                57
  CLUS_3               4                68
  CLUS_4               3               101
  CLUS_5               0                40
  CLUS_6               2                57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EIF2AK3 MUTATED       15      1      3
  EIF2AK3 WILD-TYPE    202     74     96
D1088V8, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1              15               202
  CLUS_2               1                74
  CLUS_3               3                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  EIF2AK3 MUTATED        7      2      7
  EIF2AK3 WILD-TYPE    114    106     65
D1088V9, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               7               114
  CLUS_2               2               106
  CLUS_3               7                65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF2AK3 MUTATED        4      1      3      2      6
  EIF2AK3 WILD-TYPE     84     65     42     53     41
D1088V10, multiclass
        clus
vv       EIF2AK3 MUTATED EIF2AK3 WILD-TYPE
  CLUS_1               4                84
  CLUS_2               1                65
  CLUS_3               3                42
  CLUS_4               2                53
  CLUS_5               6                41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1089) Variable = GALK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GALK1 MUTATED        0      2      1      0
  GALK1 WILD-TYPE    204    135     46      3
D1089V1, multiclass
        clus
vv       GALK1 MUTATED GALK1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             2             135
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALK1 MUTATED        0      2      0      0      0
  GALK1 WILD-TYPE     39     94     44     88     80
D1089V2, multiclass
[1] "Remove cluster labels:" "GALK1 MUTATED"         
clus
  GALK1 MUTATED GALK1 WILD-TYPE 
              2             345 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7716      TCGA-BR-7717      TCGA-BR-7722      TCGA-BR-7723 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7851      TCGA-BR-7901      TCGA-BR-7957      TCGA-BR-7958 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7959      TCGA-BR-8058      TCGA-BR-8059      TCGA-BR-8060 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8077      TCGA-BR-8078      TCGA-BR-8080      TCGA-BR-8081 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8373 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8380      TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8483      TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8589      TCGA-BR-8590 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8686      TCGA-BR-8687      TCGA-BR-8690 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A44T      TCGA-BR-A44U      TCGA-BR-A452      TCGA-BR-A453 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4CQ      TCGA-BR-A4CR      TCGA-BR-A4CS      TCGA-BR-A4IU 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4IV      TCGA-BR-A4IY      TCGA-BR-A4IZ      TCGA-BR-A4J1 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4J2      TCGA-BR-A4J4      TCGA-BR-A4J5      TCGA-BR-A4J6 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4PE 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4PF      TCGA-BR-A4QI      TCGA-BR-A4QL      TCGA-BR-A4QM 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-5798      TCGA-CD-5799      TCGA-CD-5800      TCGA-CD-5801 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-5802      TCGA-CD-5803      TCGA-CD-5804      TCGA-CD-5813 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8524      TCGA-CD-8525      TCGA-CD-8526      TCGA-CD-8527 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8528      TCGA-CD-8529      TCGA-CD-8530      TCGA-CD-8531 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534      TCGA-CD-8535 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487      TCGA-CD-A489 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-A48A      TCGA-CD-A48C      TCGA-CD-A4MH      TCGA-CD-A4MI 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-A4MJ      TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-5716 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-8578      TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A4YV      TCGA-D7-A4YX      TCGA-D7-A4YY      TCGA-D7-A4Z0 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A6ET      TCGA-D7-A6EV      TCGA-D7-A6EX      TCGA-D7-A6EY 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A6F2      TCGA-D7-A747 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A748      TCGA-D7-A74A      TCGA-D7-A74B      TCGA-EQ-5647 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7735 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7916      TCGA-FP-7998      TCGA-FP-8099 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-FP-8209      TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-FP-A4BF      TCGA-FP-A8CX      TCGA-FP-A9TM      TCGA-HF-7131 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HF-7132      TCGA-HF-7133      TCGA-HF-7134      TCGA-HF-7136 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HF-A5NB      TCGA-HJ-7597      TCGA-HU-8238      TCGA-HU-8243 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-8244      TCGA-HU-8249      TCGA-HU-8602      TCGA-HU-8604 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-8610      TCGA-HU-A4G2      TCGA-HU-A4G3 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4G6      TCGA-HU-A4G8      TCGA-HU-A4G9      TCGA-HU-A4GC 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GP      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H0 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4H2      TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-HU-A4HD 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-A6RO      TCGA-IN-A6RP      TCGA-IN-A6RR      TCGA-IN-A6RS 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-KB-A93G      TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-MX-A663      TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-R5-A7ZF      TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-R5-A805      TCGA-RD-A7BS      TCGA-RD-A7BT      TCGA-RD-A7BW 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-RD-A7C1      TCGA-RD-A8MV      TCGA-RD-A8MW      TCGA-RD-A8N0 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-RD-A8N1      TCGA-RD-A8N2      TCGA-RD-A8N4      TCGA-RD-A8N5 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU      TCGA-VQ-A8DV 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-A8DZ      TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-A8P3      TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-A8PQ      TCGA-VQ-A91Q      TCGA-VQ-A91U      TCGA-VQ-A91V 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-A92D      TCGA-VQ-A94T      TCGA-VQ-AA64      TCGA-VQ-AA68 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6J      TCGA-VQ-AA6K 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-ZA-A8F6 
"GALK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALK1 MUTATED        0      1      0      0      2
  GALK1 WILD-TYPE     26     78     73     82     56
D1089V3, multiclass
        clus
vv       GALK1 MUTATED GALK1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             0              73
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GALK1 MUTATED        0      2      1      0
  GALK1 WILD-TYPE    127     49     70     69
D1089V4, multiclass
        clus
vv       GALK1 MUTATED GALK1 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             2              49
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALK1 MUTATED        0      2      2      0      0
  GALK1 WILD-TYPE     84     83     83     69     47
D1089V5, multiclass
        clus
vv       GALK1 MUTATED GALK1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             2              83
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GALK1 MUTATED        0      1      0      3
  GALK1 WILD-TYPE     95     73    121     77
D1089V6, multiclass
        clus
vv       GALK1 MUTATED GALK1 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GALK1 MUTATED        1      2      1      0      0      0
  GALK1 WILD-TYPE     51     62     71    104     40     59
D1089V7, multiclass
        clus
vv       GALK1 MUTATED GALK1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GALK1 MUTATED        4      0      0
  GALK1 WILD-TYPE    213     75     99
D1089V8, multiclass
        clus
vv       GALK1 MUTATED GALK1 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GALK1 MUTATED        1      0      1
  GALK1 WILD-TYPE    120    108     71
D1089V9, multiclass
[1] "Remove cluster labels:" "GALK1 MUTATED"         
clus
  GALK1 MUTATED GALK1 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48C      TCGA-CD-A4MH      TCGA-CD-A4MI 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A9TM 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134      TCGA-HF-7136 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-IN-7806 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GALK1 MUTATED        0      0      0      0      2
  GALK1 WILD-TYPE     88     66     45     55     45
D1089V10, multiclass
[1] "Remove cluster labels:" "GALK1 MUTATED"         
clus
  GALK1 MUTATED GALK1 WILD-TYPE 
              2             299 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-6452      TCGA-BR-6453 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6563      TCGA-BR-6564      TCGA-BR-6565 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6566      TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6709      TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-6803      TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7703      TCGA-BR-7704      TCGA-BR-7707      TCGA-BR-7715 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7717      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8077      TCGA-BR-8078 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8080      TCGA-BR-8284      TCGA-BR-8286      TCGA-BR-8289 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8368      TCGA-BR-8369      TCGA-BR-8370      TCGA-BR-8371 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8372      TCGA-BR-8373      TCGA-BR-8380      TCGA-BR-8381 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483      TCGA-BR-8485 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8486      TCGA-BR-8487      TCGA-BR-8588      TCGA-BR-8590 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8591      TCGA-BR-8592      TCGA-BR-8676      TCGA-BR-8677 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8678      TCGA-BR-8679      TCGA-BR-8680      TCGA-BR-8682 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-8683      TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J5      TCGA-BR-A4J6 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4J7      TCGA-BR-A4J8      TCGA-BR-A4PD      TCGA-BR-A4QI 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8529      TCGA-CD-8530 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533      TCGA-CD-8534 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486      TCGA-CD-A487 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CD-A489      TCGA-CD-A48C      TCGA-CD-A4MH      TCGA-CD-A4MI 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-4437      TCGA-CG-4441      TCGA-CG-4449      TCGA-CG-5716 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5717      TCGA-CG-5718      TCGA-CG-5719      TCGA-CG-5720 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5721      TCGA-CG-5722      TCGA-CG-5723      TCGA-CG-5724 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727      TCGA-CG-5728 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733      TCGA-CG-5734 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579      TCGA-D7-6518 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521      TCGA-D7-6522 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6526      TCGA-D7-6527 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8576      TCGA-D7-8578 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-8579      TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6ET      TCGA-D7-A6EV 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A6EX      TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A6F2      TCGA-D7-A747      TCGA-D7-A748      TCGA-D7-A74A 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-D7-A74B      TCGA-EQ-5647      TCGA-EQ-8122      TCGA-F1-6177 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-F1-6874      TCGA-F1-6875      TCGA-F1-A448      TCGA-FP-7735 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-FP-7829      TCGA-FP-7998      TCGA-FP-8099      TCGA-FP-8209 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-FP-8210      TCGA-FP-8211      TCGA-FP-8631      TCGA-FP-A9TM 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7134      TCGA-HF-7136 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-8238      TCGA-HU-8243      TCGA-HU-8602      TCGA-HU-8604 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-8608      TCGA-HU-A4G3      TCGA-HU-A4G8      TCGA-HU-A4GC 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GD      TCGA-HU-A4GF      TCGA-HU-A4GH      TCGA-HU-A4GJ 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GN      TCGA-HU-A4GQ      TCGA-HU-A4GT      TCGA-HU-A4GX 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4GY      TCGA-HU-A4H2      TCGA-HU-A4H4      TCGA-HU-A4H5 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-HU-A4H6      TCGA-HU-A4H8      TCGA-HU-A4HB      TCGA-IN-7806 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663      TCGA-IN-A6RI 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-A6RJ      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RP 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-A7NR      TCGA-IN-A7NT      TCGA-IN-A7NU      TCGA-IN-AB1V 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-IN-AB1X      TCGA-IP-7968      TCGA-KB-A6F5      TCGA-KB-A6F7 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-KB-A93J      TCGA-MX-A5UG      TCGA-MX-A5UJ      TCGA-MX-A663 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-MX-A666      TCGA-R5-A7O7      TCGA-R5-A7ZE      TCGA-R5-A7ZF 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-R5-A7ZI      TCGA-R5-A7ZR      TCGA-R5-A804      TCGA-R5-A805 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-RD-A7BS      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-RD-A8N5 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-RD-A8N6      TCGA-RD-A8N9      TCGA-SW-A7EA      TCGA-SW-A7EB 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-A8DL      TCGA-VQ-A8DU      TCGA-VQ-A8DV      TCGA-VQ-A8E2 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3      TCGA-VQ-A8PE 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ      TCGA-VQ-A91Q 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-A94T 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-AA64      TCGA-VQ-AA68      TCGA-VQ-AA69      TCGA-VQ-AA6A 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-AA6B      TCGA-VQ-AA6F      TCGA-VQ-AA6G      TCGA-VQ-AA6I 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 
     TCGA-VQ-AA6J      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"GALK1 WILD-TYPE" "GALK1 WILD-TYPE" "GALK1 WILD-TYPE" 

Clustering(1090) Variable = ZNF334 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF334 MUTATED        2     11      0      0
  ZNF334 WILD-TYPE    202    126     47      3
D1090V1, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              2              202
  CLUS_2             11              126
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF334 MUTATED        1      5      2      1      1
  ZNF334 WILD-TYPE     38     91     42     87     79
D1090V2, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF334 MUTATED        0      6      3      1      2
  ZNF334 WILD-TYPE     26     73     70     81     56
D1090V3, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              6               73
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF334 MUTATED        0      8      3      1
  ZNF334 WILD-TYPE    127     43     68     68
D1090V4, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              8               43
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF334 MUTATED        1      2      8      0      1
  ZNF334 WILD-TYPE     83     83     77     69     46
D1090V5, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              8               77
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF334 MUTATED        1      1      2      8
  ZNF334 WILD-TYPE     94     73    119     72
D1090V6, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              8               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF334 MUTATED        4      6      2      0      0      1
  ZNF334 WILD-TYPE     48     58     70    104     40     58
D1090V7, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              6               58
  CLUS_3              2               70
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF334 MUTATED       11      1      1
  ZNF334 WILD-TYPE    206     74     98
D1090V8, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1             11              206
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF334 MUTATED        5      0      3
  ZNF334 WILD-TYPE    116    108     69
D1090V9, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF334 MUTATED        1      0      3      0      4
  ZNF334 WILD-TYPE     87     66     42     55     43
D1090V10, multiclass
        clus
vv       ZNF334 MUTATED ZNF334 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1091) Variable = HORMAD1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HORMAD1 MUTATED        1      5      1      0
  HORMAD1 WILD-TYPE    203    132     46      3
D1091V1, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               5               132
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HORMAD1 MUTATED        0      4      1      0      0
  HORMAD1 WILD-TYPE     39     92     43     88     80
D1091V2, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               4                92
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HORMAD1 MUTATED        1      3      1      1      1
  HORMAD1 WILD-TYPE     25     76     72     81     57
D1091V3, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                76
  CLUS_3               1                72
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HORMAD1 MUTATED        2      3      1      1
  HORMAD1 WILD-TYPE    125     48     70     68
D1091V4, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               3                48
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HORMAD1 MUTATED        1      0      4      1      0
  HORMAD1 WILD-TYPE     83     85     81     68     47
D1091V5, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               0                85
  CLUS_3               4                81
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HORMAD1 MUTATED        2      1      1      2
  HORMAD1 WILD-TYPE     93     73    120     78
D1091V6, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               2                78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HORMAD1 MUTATED        1      2      2      0      1      1
  HORMAD1 WILD-TYPE     51     62     70    104     39     58
D1091V7, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               2                62
  CLUS_3               2                70
  CLUS_4               0               104
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HORMAD1 MUTATED        5      1      1
  HORMAD1 WILD-TYPE    212     74     98
D1091V8, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               5               212
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  HORMAD1 MUTATED        2      0      2
  HORMAD1 WILD-TYPE    119    108     70
D1091V9, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               0               108
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HORMAD1 MUTATED        2      0      1      0      1
  HORMAD1 WILD-TYPE     86     66     44     55     46
D1091V10, multiclass
        clus
vv       HORMAD1 MUTATED HORMAD1 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1092) Variable = CSNK1G1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1G1 MUTATED        1      5      0      0
  CSNK1G1 WILD-TYPE    203    132     47      3
D1092V1, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               5               132
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G1 MUTATED        0      5      0      0      0
  CSNK1G1 WILD-TYPE     39     91     44     88     80
D1092V2, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               5                91
  CLUS_3               0                44
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G1 MUTATED        0      1      2      0      2
  CSNK1G1 WILD-TYPE     26     78     71     82     56
D1092V3, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                78
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1G1 MUTATED        2      3      0      0
  CSNK1G1 WILD-TYPE    125     48     71     69
D1092V4, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               3                48
  CLUS_3               0                71
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G1 MUTATED        0      0      4      2      1
  CSNK1G1 WILD-TYPE     84     85     81     67     46
D1092V5, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               4                81
  CLUS_4               2                67
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSNK1G1 MUTATED        2      0      0      5
  CSNK1G1 WILD-TYPE     93     74    121     75
D1092V6, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               0                74
  CLUS_3               0               121
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSNK1G1 MUTATED        4      2      1      0      0      0
  CSNK1G1 WILD-TYPE     48     62     71    104     40     59
D1092V7, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               4                48
  CLUS_2               2                62
  CLUS_3               1                71
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK1G1 MUTATED        6      0      1
  CSNK1G1 WILD-TYPE    211     75     98
D1092V8, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  CSNK1G1 MUTATED        5      0      0
  CSNK1G1 WILD-TYPE    116    108     72
D1092V9, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               5               116
  CLUS_2               0               108
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSNK1G1 MUTATED        0      0      0      0      5
  CSNK1G1 WILD-TYPE     88     66     45     55     42
D1092V10, multiclass
        clus
vv       CSNK1G1 MUTATED CSNK1G1 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               5                42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1093) Variable = HIST1H1B MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1B MUTATED        3      8      0      0
  HIST1H1B WILD-TYPE    201    129     47      3
D1093V1, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                3                201
  CLUS_2                8                129
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1B MUTATED        0      7      0      1      1
  HIST1H1B WILD-TYPE     39     89     44     87     79
D1093V2, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                7                 89
  CLUS_3                0                 44
  CLUS_4                1                 87
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1B MUTATED        2      3      5      0      1
  HIST1H1B WILD-TYPE     24     76     68     82     57
D1093V3, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                3                 76
  CLUS_3                5                 68
  CLUS_4                0                 82
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1B MUTATED        3      5      3      0
  HIST1H1B WILD-TYPE    124     46     68     69
D1093V4, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                3                124
  CLUS_2                5                 46
  CLUS_3                3                 68
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1B MUTATED        1      2      3      1      3
  HIST1H1B WILD-TYPE     83     83     82     68     44
D1093V5, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 83
  CLUS_3                3                 82
  CLUS_4                1                 68
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIST1H1B MUTATED        2      1      2      5
  HIST1H1B WILD-TYPE     93     73    119     75
D1093V6, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                1                 73
  CLUS_3                2                119
  CLUS_4                5                 75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIST1H1B MUTATED        2      4      2      1      1      1
  HIST1H1B WILD-TYPE     50     60     70    103     39     58
D1093V7, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                4                 60
  CLUS_3                2                 70
  CLUS_4                1                103
  CLUS_5                1                 39
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1B MUTATED        9      0      2
  HIST1H1B WILD-TYPE    208     75     97
D1093V8, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                9                208
  CLUS_2                0                 75
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  HIST1H1B MUTATED        4      1      4
  HIST1H1B WILD-TYPE    117    107     68
D1093V9, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                4                117
  CLUS_2                1                107
  CLUS_3                4                 68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIST1H1B MUTATED        4      0      2      1      2
  HIST1H1B WILD-TYPE     84     66     43     54     45
D1093V10, multiclass
        clus
vv       HIST1H1B MUTATED HIST1H1B WILD-TYPE
  CLUS_1                4                 84
  CLUS_2                0                 66
  CLUS_3                2                 43
  CLUS_4                1                 54
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1094) Variable = KIF20B MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF20B MUTATED        3     10      0      0
  KIF20B WILD-TYPE    201    127     47      3
D1094V1, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              3              201
  CLUS_2             10              127
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF20B MUTATED        2      5      2      1      0
  KIF20B WILD-TYPE     37     91     42     87     80
D1094V2, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              2               37
  CLUS_2              5               91
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF20B MUTATED        0      6      4      0      2
  KIF20B WILD-TYPE     26     73     69     82     56
D1094V3, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              0               26
  CLUS_2              6               73
  CLUS_3              4               69
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF20B MUTATED        1      7      4      0
  KIF20B WILD-TYPE    126     44     67     69
D1094V4, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              1              126
  CLUS_2              7               44
  CLUS_3              4               67
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF20B MUTATED        2      0      5      1      4
  KIF20B WILD-TYPE     82     85     80     68     43
D1094V5, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              2               82
  CLUS_2              0               85
  CLUS_3              5               80
  CLUS_4              1               68
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIF20B MUTATED        4      1      2      5
  KIF20B WILD-TYPE     91     73    119     75
D1094V6, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              4               91
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIF20B MUTATED        4      4      2      1      1      1
  KIF20B WILD-TYPE     48     60     70    103     39     58
D1094V7, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              4               48
  CLUS_2              4               60
  CLUS_3              2               70
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF20B MUTATED       11      1      1
  KIF20B WILD-TYPE    206     74     98
D1094V8, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1             11              206
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  KIF20B MUTATED        6      0      3
  KIF20B WILD-TYPE    115    108     69
D1094V9, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              6              115
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIF20B MUTATED        5      1      0      1      2
  KIF20B WILD-TYPE     83     65     45     54     45
D1094V10, multiclass
        clus
vv       KIF20B MUTATED KIF20B WILD-TYPE
  CLUS_1              5               83
  CLUS_2              1               65
  CLUS_3              0               45
  CLUS_4              1               54
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1095) Variable = SASH3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SASH3 MUTATED        0      7      1      0
  SASH3 WILD-TYPE    204    130     46      3
D1095V1, multiclass
        clus
vv       SASH3 MUTATED SASH3 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             7             130
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SASH3 MUTATED        2      5      0      0      0
  SASH3 WILD-TYPE     37     91     44     88     80
D1095V2, multiclass
        clus
vv       SASH3 MUTATED SASH3 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SASH3 MUTATED        1      1      3      0      2
  SASH3 WILD-TYPE     25     78     70     82     56
D1095V3, multiclass
        clus
vv       SASH3 MUTATED SASH3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SASH3 MUTATED        2      5      0      0
  SASH3 WILD-TYPE    125     46     71     69
D1095V4, multiclass
        clus
vv       SASH3 MUTATED SASH3 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             5              46
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SASH3 MUTATED        0      0      2      4      1
  SASH3 WILD-TYPE     84     85     83     65     46
D1095V5, multiclass
        clus
vv       SASH3 MUTATED SASH3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             2              83
  CLUS_4             4              65
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SASH3 MUTATED        5      0      0      2
  SASH3 WILD-TYPE     90     74    121     78
D1095V6, multiclass
        clus
vv       SASH3 MUTATED SASH3 WILD-TYPE
  CLUS_1             5              90
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SASH3 MUTATED        4      2      1      0      1      0
  SASH3 WILD-TYPE     48     62     71    104     39     59
D1095V7, multiclass
        clus
vv       SASH3 MUTATED SASH3 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SASH3 MUTATED        8      0      0
  SASH3 WILD-TYPE    209     75     99
D1095V8, multiclass
        clus
vv       SASH3 MUTATED SASH3 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SASH3 MUTATED        5      0      2
  SASH3 WILD-TYPE    116    108     70
D1095V9, multiclass
        clus
vv       SASH3 MUTATED SASH3 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SASH3 MUTATED        2      0      1      0      4
  SASH3 WILD-TYPE     86     66     44     55     43
D1095V10, multiclass
        clus
vv       SASH3 MUTATED SASH3 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1096) Variable = TCERG1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCERG1 MUTATED        2     10      0      0
  TCERG1 WILD-TYPE    202    127     47      3
D1096V1, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              2              202
  CLUS_2             10              127
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCERG1 MUTATED        1      6      1      0      2
  TCERG1 WILD-TYPE     38     90     43     88     78
D1096V2, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               90
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCERG1 MUTATED        2      2      3      1      3
  TCERG1 WILD-TYPE     24     77     70     81     55
D1096V3, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              2               77
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCERG1 MUTATED        2      6      1      2
  TCERG1 WILD-TYPE    125     45     70     67
D1096V4, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              6               45
  CLUS_3              1               70
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCERG1 MUTATED        1      1      7      2      1
  TCERG1 WILD-TYPE     83     84     78     67     46
D1096V5, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              7               78
  CLUS_4              2               67
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TCERG1 MUTATED        3      2      3      4
  TCERG1 WILD-TYPE     92     72    118     76
D1096V6, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              2               72
  CLUS_3              3              118
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TCERG1 MUTATED        3      5      1      2      0      1
  TCERG1 WILD-TYPE     49     59     71    102     40     58
D1096V7, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              5               59
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCERG1 MUTATED       11      0      1
  TCERG1 WILD-TYPE    206     75     98
D1096V8, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1             11              206
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TCERG1 MUTATED        5      1      4
  TCERG1 WILD-TYPE    116    107     68
D1096V9, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              1              107
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TCERG1 MUTATED        4      0      3      0      3
  TCERG1 WILD-TYPE     84     66     42     55     44
D1096V10, multiclass
        clus
vv       TCERG1 MUTATED TCERG1 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1097) Variable = FBXL22 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXL22 MUTATED        0      4      1      0
  FBXL22 WILD-TYPE    204    133     46      3
D1097V1, multiclass
        clus
vv       FBXL22 MUTATED FBXL22 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              4              133
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXL22 MUTATED        1      3      0      0      0
  FBXL22 WILD-TYPE     38     93     44     88     80
D1097V2, multiclass
        clus
vv       FBXL22 MUTATED FBXL22 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              3               93
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXL22 MUTATED        0      2      2      0      0
  FBXL22 WILD-TYPE     26     77     71     82     58
D1097V3, multiclass
        clus
vv       FBXL22 MUTATED FBXL22 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXL22 MUTATED        0      2      2      0
  FBXL22 WILD-TYPE    127     49     69     69
D1097V4, multiclass
        clus
vv       FBXL22 MUTATED FBXL22 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              2               49
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXL22 MUTATED        0      1      2      1      0
  FBXL22 WILD-TYPE     84     84     83     68     47
D1097V5, multiclass
        clus
vv       FBXL22 MUTATED FBXL22 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              2               83
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FBXL22 MUTATED        1      2      0      1
  FBXL22 WILD-TYPE     94     72    121     79
D1097V6, multiclass
        clus
vv       FBXL22 MUTATED FBXL22 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FBXL22 MUTATED        1      2      0      1      1      0
  FBXL22 WILD-TYPE     51     62     72    103     39     59
D1097V7, multiclass
        clus
vv       FBXL22 MUTATED FBXL22 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXL22 MUTATED        4      1      0
  FBXL22 WILD-TYPE    213     74     99
D1097V8, multiclass
        clus
vv       FBXL22 MUTATED FBXL22 WILD-TYPE
  CLUS_1              4              213
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FBXL22 MUTATED        2      1      1
  FBXL22 WILD-TYPE    119    107     71
D1097V9, multiclass
        clus
vv       FBXL22 MUTATED FBXL22 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              1              107
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FBXL22 MUTATED        0      1      1      0      2
  FBXL22 WILD-TYPE     88     65     44     55     45
D1097V10, multiclass
        clus
vv       FBXL22 MUTATED FBXL22 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1098) Variable = PARP15 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP15 MUTATED        1      4      0      0
  PARP15 WILD-TYPE    203    133     47      3
D1098V1, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              4              133
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP15 MUTATED        1      1      2      0      1
  PARP15 WILD-TYPE     38     95     42     88     79
D1098V2, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              1               95
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP15 MUTATED        1      2      1      0      1
  PARP15 WILD-TYPE     25     77     72     82     57
D1098V3, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               77
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP15 MUTATED        1      2      2      0
  PARP15 WILD-TYPE    126     49     69     69
D1098V4, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              2               69
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP15 MUTATED        0      0      4      0      0
  PARP15 WILD-TYPE     84     85     81     69     47
D1098V5, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              4               81
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PARP15 MUTATED        0      0      1      3
  PARP15 WILD-TYPE     95     74    120     77
D1098V6, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              0               74
  CLUS_3              1              120
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PARP15 MUTATED        2      2      0      1      0      0
  PARP15 WILD-TYPE     50     62     72    103     40     59
D1098V7, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              2               62
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP15 MUTATED        4      1      0
  PARP15 WILD-TYPE    213     74     99
D1098V8, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              4              213
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PARP15 MUTATED        1      0      3
  PARP15 WILD-TYPE    120    108     69
D1098V9, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              1              120
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PARP15 MUTATED        1      1      2      0      0
  PARP15 WILD-TYPE     87     65     43     55     47
D1098V10, multiclass
        clus
vv       PARP15 MUTATED PARP15 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1099) Variable = NCAN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAN MUTATED        5     16      3      0
  NCAN WILD-TYPE    199    121     44      3
D1099V1, multiclass
        clus
vv       NCAN MUTATED NCAN WILD-TYPE
  CLUS_1            5            199
  CLUS_2           16            121
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCAN MUTATED        0     12      3      0      2
  NCAN WILD-TYPE     39     84     41     88     78
D1099V2, multiclass
        clus
vv       NCAN MUTATED NCAN WILD-TYPE
  CLUS_1            0             39
  CLUS_2           12             84
  CLUS_3            3             41
  CLUS_4            0             88
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCAN MUTATED        2      8      4      3      5
  NCAN WILD-TYPE     24     71     69     79     53
D1099V3, multiclass
        clus
vv       NCAN MUTATED NCAN WILD-TYPE
  CLUS_1            2             24
  CLUS_2            8             71
  CLUS_3            4             69
  CLUS_4            3             79
  CLUS_5            5             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAN MUTATED        5      9      6      2
  NCAN WILD-TYPE    122     42     65     67
D1099V4, multiclass
        clus
vv       NCAN MUTATED NCAN WILD-TYPE
  CLUS_1            5            122
  CLUS_2            9             42
  CLUS_3            6             65
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCAN MUTATED        3      6     10      1      4
  NCAN WILD-TYPE     81     79     75     68     43
D1099V5, multiclass
        clus
vv       NCAN MUTATED NCAN WILD-TYPE
  CLUS_1            3             81
  CLUS_2            6             79
  CLUS_3           10             75
  CLUS_4            1             68
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NCAN MUTATED        7      4      4      9
  NCAN WILD-TYPE     88     70    117     71
D1099V6, multiclass
        clus
vv       NCAN MUTATED NCAN WILD-TYPE
  CLUS_1            7             88
  CLUS_2            4             70
  CLUS_3            4            117
  CLUS_4            9             71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NCAN MUTATED        2      8      6      5      1      3
  NCAN WILD-TYPE     50     56     66     99     39     56
D1099V7, multiclass
        clus
vv       NCAN MUTATED NCAN WILD-TYPE
  CLUS_1            2             50
  CLUS_2            8             56
  CLUS_3            6             66
  CLUS_4            5             99
  CLUS_5            1             39
  CLUS_6            3             56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NCAN MUTATED       18      4      3
  NCAN WILD-TYPE    199     71     96
D1099V8, multiclass
        clus
vv       NCAN MUTATED NCAN WILD-TYPE
  CLUS_1           18            199
  CLUS_2            4             71
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NCAN MUTATED        4      5      7
  NCAN WILD-TYPE    117    103     65
D1099V9, multiclass
        clus
vv       NCAN MUTATED NCAN WILD-TYPE
  CLUS_1            4            117
  CLUS_2            5            103
  CLUS_3            7             65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NCAN MUTATED        3      2      3      2      6
  NCAN WILD-TYPE     85     64     42     53     41
D1099V10, multiclass
        clus
vv       NCAN MUTATED NCAN WILD-TYPE
  CLUS_1            3             85
  CLUS_2            2             64
  CLUS_3            3             42
  CLUS_4            2             53
  CLUS_5            6             41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1100) Variable = SLC30A3 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC30A3 MUTATED        1      5      3      0
  SLC30A3 WILD-TYPE    203    132     44      3
D1100V1, multiclass
        clus
vv       SLC30A3 MUTATED SLC30A3 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               5               132
  CLUS_3               3                44
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC30A3 MUTATED        2      2      1      1      0
  SLC30A3 WILD-TYPE     37     94     43     87     80
D1100V2, multiclass
        clus
vv       SLC30A3 MUTATED SLC30A3 WILD-TYPE
  CLUS_1               2                37
  CLUS_2               2                94
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC30A3 MUTATED        1      2      1      0      5
  SLC30A3 WILD-TYPE     25     77     72     82     53
D1100V3, multiclass
        clus
vv       SLC30A3 MUTATED SLC30A3 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               2                77
  CLUS_3               1                72
  CLUS_4               0                82
  CLUS_5               5                53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC30A3 MUTATED        1      7      1      0
  SLC30A3 WILD-TYPE    126     44     70     69
D1100V4, multiclass
        clus
vv       SLC30A3 MUTATED SLC30A3 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               7                44
  CLUS_3               1                70
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC30A3 MUTATED        1      1      4      1      1
  SLC30A3 WILD-TYPE     83     84     81     68     46
D1100V5, multiclass
        clus
vv       SLC30A3 MUTATED SLC30A3 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               1                84
  CLUS_3               4                81
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC30A3 MUTATED        2      0      1      5
  SLC30A3 WILD-TYPE     93     74    120     75
D1100V6, multiclass
        clus
vv       SLC30A3 MUTATED SLC30A3 WILD-TYPE
  CLUS_1               2                93
  CLUS_2               0                74
  CLUS_3               1               120
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC30A3 MUTATED        2      2      3      0      1      1
  SLC30A3 WILD-TYPE     50     62     69    104     39     58
D1100V7, multiclass
        clus
vv       SLC30A3 MUTATED SLC30A3 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               2                62
  CLUS_3               3                69
  CLUS_4               0               104
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC30A3 MUTATED        6      0      3
  SLC30A3 WILD-TYPE    211     75     96
D1100V8, multiclass
        clus
vv       SLC30A3 MUTATED SLC30A3 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               0                75
  CLUS_3               3                96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC30A3 MUTATED        3      1      2
  SLC30A3 WILD-TYPE    118    107     70
D1100V9, multiclass
        clus
vv       SLC30A3 MUTATED SLC30A3 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               1               107
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC30A3 MUTATED        2      0      0      0      4
  SLC30A3 WILD-TYPE     86     66     45     55     43
D1100V10, multiclass
        clus
vv       SLC30A3 MUTATED SLC30A3 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1101) Variable = LRP1B MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP1B MUTATED       46     44     12      1
  LRP1B WILD-TYPE    158     93     35      2
D1101V1, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            46             158
  CLUS_2            44              93
  CLUS_3            12              35
  CLUS_4             1               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP1B MUTATED        3     50      8     19     12
  LRP1B WILD-TYPE     36     46     36     69     68
D1101V2, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1             3              36
  CLUS_2            50              46
  CLUS_3             8              36
  CLUS_4            19              69
  CLUS_5            12              68
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP1B MUTATED        9     25     23     15     17
  LRP1B WILD-TYPE     17     54     50     67     41
D1101V3, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1             9              17
  CLUS_2            25              54
  CLUS_3            23              50
  CLUS_4            15              67
  CLUS_5            17              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP1B MUTATED       31     26     15     17
  LRP1B WILD-TYPE     96     25     56     52
D1101V4, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            31              96
  CLUS_2            26              25
  CLUS_3            15              56
  CLUS_4            17              52
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP1B MUTATED       17     16     36     15     17
  LRP1B WILD-TYPE     67     69     49     54     30
D1101V5, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            17              67
  CLUS_2            16              69
  CLUS_3            36              49
  CLUS_4            15              54
  CLUS_5            17              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRP1B MUTATED       21     15     27     38
  LRP1B WILD-TYPE     74     59     94     42
D1101V6, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            21              74
  CLUS_2            15              59
  CLUS_3            27              94
  CLUS_4            38              42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRP1B MUTATED       21     17     20     23     11     11
  LRP1B WILD-TYPE     31     47     52     81     29     48
D1101V7, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            21              31
  CLUS_2            17              47
  CLUS_3            20              52
  CLUS_4            23              81
  CLUS_5            11              29
  CLUS_6            11              48
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRP1B MUTATED       66     16     21
  LRP1B WILD-TYPE    151     59     78
D1101V8, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            66             151
  CLUS_2            16              59
  CLUS_3            21              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRP1B MUTATED       35     27     21
  LRP1B WILD-TYPE     86     81     51
D1101V9, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            35              86
  CLUS_2            27              81
  CLUS_3            21              51
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRP1B MUTATED       31     11     11     13     17
  LRP1B WILD-TYPE     57     55     34     42     30
D1101V10, multiclass
        clus
vv       LRP1B MUTATED LRP1B WILD-TYPE
  CLUS_1            31              57
  CLUS_2            11              55
  CLUS_3            11              34
  CLUS_4            13              42
  CLUS_5            17              30
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1102) Variable = GNAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAS MUTATED       10     20      3      0
  GNAS WILD-TYPE    194    117     44      3
D1102V1, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1           10            194
  CLUS_2           20            117
  CLUS_3            3             44
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAS MUTATED        2     17      3      4      4
  GNAS WILD-TYPE     37     79     41     84     76
D1102V2, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            2             37
  CLUS_2           17             79
  CLUS_3            3             41
  CLUS_4            4             84
  CLUS_5            4             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAS MUTATED        4      5      9      3      6
  GNAS WILD-TYPE     22     74     64     79     52
D1102V3, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            4             22
  CLUS_2            5             74
  CLUS_3            9             64
  CLUS_4            3             79
  CLUS_5            6             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAS MUTATED       12      8      6      1
  GNAS WILD-TYPE    115     43     65     68
D1102V4, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1           12            115
  CLUS_2            8             43
  CLUS_3            6             65
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAS MUTATED        5      3     13      6      5
  GNAS WILD-TYPE     79     82     72     63     42
D1102V5, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            5             79
  CLUS_2            3             82
  CLUS_3           13             72
  CLUS_4            6             63
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GNAS MUTATED        8      3      5     16
  GNAS WILD-TYPE     87     71    116     64
D1102V6, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            8             87
  CLUS_2            3             71
  CLUS_3            5            116
  CLUS_4           16             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GNAS MUTATED       12      6      7      2      3      4
  GNAS WILD-TYPE     40     58     65    102     37     55
D1102V7, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1           12             40
  CLUS_2            6             58
  CLUS_3            7             65
  CLUS_4            2            102
  CLUS_5            3             37
  CLUS_6            4             55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAS MUTATED       28      2      4
  GNAS WILD-TYPE    189     73     95
D1102V8, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1           28            189
  CLUS_2            2             73
  CLUS_3            4             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  GNAS MUTATED       15      4      8
  GNAS WILD-TYPE    106    104     64
D1102V9, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1           15            106
  CLUS_2            4            104
  CLUS_3            8             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GNAS MUTATED        9      3      4      3      8
  GNAS WILD-TYPE     79     63     41     52     39
D1102V10, multiclass
        clus
vv       GNAS MUTATED GNAS WILD-TYPE
  CLUS_1            9             79
  CLUS_2            3             63
  CLUS_3            4             41
  CLUS_4            3             52
  CLUS_5            8             39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1103) Variable = FER MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER MUTATED        4      9      0      0
  FER WILD-TYPE    200    128     47      3
D1103V1, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           4           200
  CLUS_2           9           128
  CLUS_3           0            47
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FER MUTATED        2      6      0      2      2
  FER WILD-TYPE     37     90     44     86     78
D1103V2, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           2            37
  CLUS_2           6            90
  CLUS_3           0            44
  CLUS_4           2            86
  CLUS_5           2            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FER MUTATED        3      3      4      0      2
  FER WILD-TYPE     23     76     69     82     56
D1103V3, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           3            23
  CLUS_2           3            76
  CLUS_3           4            69
  CLUS_4           0            82
  CLUS_5           2            56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER MUTATED        4      6      1      1
  FER WILD-TYPE    123     45     70     68
D1103V4, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           4           123
  CLUS_2           6            45
  CLUS_3           1            70
  CLUS_4           1            68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FER MUTATED        2      1      7      2      1
  FER WILD-TYPE     82     84     78     67     46
D1103V5, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           2            82
  CLUS_2           1            84
  CLUS_3           7            78
  CLUS_4           2            67
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FER MUTATED        4      1      4      4
  FER WILD-TYPE     91     73    117     76
D1103V6, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           4            91
  CLUS_2           1            73
  CLUS_3           4           117
  CLUS_4           4            76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FER MUTATED        4      4      2      1      1      1
  FER WILD-TYPE     48     60     70    103     39     58
D1103V7, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           4            48
  CLUS_2           4            60
  CLUS_3           2            70
  CLUS_4           1           103
  CLUS_5           1            39
  CLUS_6           1            58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FER MUTATED       10      2      1
  FER WILD-TYPE    207     73     98
D1103V8, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1          10           207
  CLUS_2           2            73
  CLUS_3           1            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FER MUTATED        6      1      3
  FER WILD-TYPE    115    107     69
D1103V9, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           6           115
  CLUS_2           1           107
  CLUS_3           3            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FER MUTATED        4      1      3      1      1
  FER WILD-TYPE     84     65     42     54     46
D1103V10, multiclass
        clus
vv       FER MUTATED FER WILD-TYPE
  CLUS_1           4            84
  CLUS_2           1            65
  CLUS_3           3            42
  CLUS_4           1            54
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1104) Variable = GPATCH2 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH2 MUTATED        2      7      0      0
  GPATCH2 WILD-TYPE    202    130     47      3
D1104V1, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               2               202
  CLUS_2               7               130
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH2 MUTATED        0      3      1      2      1
  GPATCH2 WILD-TYPE     39     93     43     86     79
D1104V2, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               1                43
  CLUS_4               2                86
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH2 MUTATED        1      3      4      0      0
  GPATCH2 WILD-TYPE     25     76     69     82     58
D1104V3, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               3                76
  CLUS_3               4                69
  CLUS_4               0                82
  CLUS_5               0                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH2 MUTATED        1      5      2      0
  GPATCH2 WILD-TYPE    126     46     69     69
D1104V4, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               5                46
  CLUS_3               2                69
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH2 MUTATED        0      2      4      1      2
  GPATCH2 WILD-TYPE     84     83     81     68     45
D1104V5, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3               4                81
  CLUS_4               1                68
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPATCH2 MUTATED        3      1      2      3
  GPATCH2 WILD-TYPE     92     73    119     77
D1104V6, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               1                73
  CLUS_3               2               119
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPATCH2 MUTATED        1      5      0      1      1      1
  GPATCH2 WILD-TYPE     51     59     72    103     39     58
D1104V7, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               5                59
  CLUS_3               0                72
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH2 MUTATED        6      1      2
  GPATCH2 WILD-TYPE    211     74     97
D1104V8, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               1                74
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  GPATCH2 MUTATED        2      1      4
  GPATCH2 WILD-TYPE    119    107     68
D1104V9, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               1               107
  CLUS_3               4                68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPATCH2 MUTATED        0      1      3      1      2
  GPATCH2 WILD-TYPE     88     65     42     54     45
D1104V10, multiclass
        clus
vv       GPATCH2 MUTATED GPATCH2 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               1                65
  CLUS_3               3                42
  CLUS_4               1                54
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1105) Variable = GFOD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFOD1 MUTATED        2     10      1      0
  GFOD1 WILD-TYPE    202    127     46      3
D1105V1, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            10             127
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GFOD1 MUTATED        1      4      2      0      1
  GFOD1 WILD-TYPE     38     92     42     88     79
D1105V2, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             4              92
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GFOD1 MUTATED        1      6      0      1      4
  GFOD1 WILD-TYPE     25     73     73     81     54
D1105V3, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             6              73
  CLUS_3             0              73
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFOD1 MUTATED        2      5      5      0
  GFOD1 WILD-TYPE    125     46     66     69
D1105V4, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             5              46
  CLUS_3             5              66
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GFOD1 MUTATED        1      3      5      3      1
  GFOD1 WILD-TYPE     83     82     80     66     46
D1105V5, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             5              80
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GFOD1 MUTATED        4      2      2      5
  GFOD1 WILD-TYPE     91     72    119     75
D1105V6, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GFOD1 MUTATED        1      9      2      1      0      0
  GFOD1 WILD-TYPE     51     55     70    103     40     59
D1105V7, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             9              55
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GFOD1 MUTATED       10      1      2
  GFOD1 WILD-TYPE    207     74     97
D1105V8, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1            10             207
  CLUS_2             1              74
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GFOD1 MUTATED        3      1      4
  GFOD1 WILD-TYPE    118    107     68
D1105V9, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GFOD1 MUTATED        1      1      4      0      2
  GFOD1 WILD-TYPE     87     65     41     55     45
D1105V10, multiclass
        clus
vv       GFOD1 MUTATED GFOD1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1106) Variable = C3ORF33 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF33 MUTATED        1      3      2      0
  C3ORF33 WILD-TYPE    203    134     45      3
D1106V1, multiclass
        clus
vv       C3ORF33 MUTATED C3ORF33 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               3               134
  CLUS_3               2                45
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3ORF33 MUTATED        0      5      1      1      0
  C3ORF33 WILD-TYPE     39     91     43     87     80
D1106V2, multiclass
        clus
vv       C3ORF33 MUTATED C3ORF33 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               5                91
  CLUS_3               1                43
  CLUS_4               1                87
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3ORF33 MUTATED        0      3      1      0      1
  C3ORF33 WILD-TYPE     26     76     72     82     57
D1106V3, multiclass
        clus
vv       C3ORF33 MUTATED C3ORF33 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               3                76
  CLUS_3               1                72
  CLUS_4               0                82
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF33 MUTATED        0      2      3      0
  C3ORF33 WILD-TYPE    127     49     68     69
D1106V4, multiclass
        clus
vv       C3ORF33 MUTATED C3ORF33 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               2                49
  CLUS_3               3                68
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3ORF33 MUTATED        0      1      4      0      2
  C3ORF33 WILD-TYPE     84     84     81     69     45
D1106V5, multiclass
        clus
vv       C3ORF33 MUTATED C3ORF33 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               1                84
  CLUS_3               4                81
  CLUS_4               0                69
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C3ORF33 MUTATED        0      0      2      5
  C3ORF33 WILD-TYPE     95     74    119     75
D1106V6, multiclass
        clus
vv       C3ORF33 MUTATED C3ORF33 WILD-TYPE
  CLUS_1               0                95
  CLUS_2               0                74
  CLUS_3               2               119
  CLUS_4               5                75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C3ORF33 MUTATED        2      2      1      1      0      1
  C3ORF33 WILD-TYPE     50     62     71    103     40     58
D1106V7, multiclass
        clus
vv       C3ORF33 MUTATED C3ORF33 WILD-TYPE
  CLUS_1               2                50
  CLUS_2               2                62
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF33 MUTATED        6      0      1
  C3ORF33 WILD-TYPE    211     75     98
D1106V8, multiclass
        clus
vv       C3ORF33 MUTATED C3ORF33 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               0                75
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  C3ORF33 MUTATED        3      1      3
  C3ORF33 WILD-TYPE    118    107     69
D1106V9, multiclass
        clus
vv       C3ORF33 MUTATED C3ORF33 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               1               107
  CLUS_3               3                69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C3ORF33 MUTATED        2      0      2      1      2
  C3ORF33 WILD-TYPE     86     66     43     54     45
D1106V10, multiclass
        clus
vv       C3ORF33 MUTATED C3ORF33 WILD-TYPE
  CLUS_1               2                86
  CLUS_2               0                66
  CLUS_3               2                43
  CLUS_4               1                54
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1107) Variable = MYCL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYCL1 MUTATED        3      3      1      0
  MYCL1 WILD-TYPE    201    134     46      3
D1107V1, multiclass
        clus
vv       MYCL1 MUTATED MYCL1 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             3             134
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYCL1 MUTATED        3      3      0      0      0
  MYCL1 WILD-TYPE     36     93     44     88     80
D1107V2, multiclass
        clus
vv       MYCL1 MUTATED MYCL1 WILD-TYPE
  CLUS_1             3              36
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYCL1 MUTATED        0      1      4      1      0
  MYCL1 WILD-TYPE     26     78     69     81     58
D1107V3, multiclass
        clus
vv       MYCL1 MUTATED MYCL1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYCL1 MUTATED        1      4      1      0
  MYCL1 WILD-TYPE    126     47     70     69
D1107V4, multiclass
        clus
vv       MYCL1 MUTATED MYCL1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYCL1 MUTATED        0      1      2      3      1
  MYCL1 WILD-TYPE     84     84     83     66     46
D1107V5, multiclass
        clus
vv       MYCL1 MUTATED MYCL1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             2              83
  CLUS_4             3              66
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYCL1 MUTATED        4      1      0      2
  MYCL1 WILD-TYPE     91     73    121     78
D1107V6, multiclass
        clus
vv       MYCL1 MUTATED MYCL1 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             0             121
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MYCL1 MUTATED        1      4      1      0      2      0
  MYCL1 WILD-TYPE     51     60     71    104     38     59
D1107V7, multiclass
        clus
vv       MYCL1 MUTATED MYCL1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             4              60
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYCL1 MUTATED        8      0      0
  MYCL1 WILD-TYPE    209     75     99
D1107V8, multiclass
        clus
vv       MYCL1 MUTATED MYCL1 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYCL1 MUTATED        3      0      2
  MYCL1 WILD-TYPE    118    108     70
D1107V9, multiclass
        clus
vv       MYCL1 MUTATED MYCL1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYCL1 MUTATED        1      0      2      0      2
  MYCL1 WILD-TYPE     87     66     43     55     45
D1107V10, multiclass
        clus
vv       MYCL1 MUTATED MYCL1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1108) Variable = SERPING1 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPING1 MUTATED        3      4      1      0
  SERPING1 WILD-TYPE    201    133     46      3
D1108V1, multiclass
        clus
vv       SERPING1 MUTATED SERPING1 WILD-TYPE
  CLUS_1                3                201
  CLUS_2                4                133
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPING1 MUTATED        1      2      2      1      1
  SERPING1 WILD-TYPE     38     94     42     87     79
D1108V2, multiclass
        clus
vv       SERPING1 MUTATED SERPING1 WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                2                 94
  CLUS_3                2                 42
  CLUS_4                1                 87
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPING1 MUTATED        1      2      1      2      2
  SERPING1 WILD-TYPE     25     77     72     80     56
D1108V3, multiclass
        clus
vv       SERPING1 MUTATED SERPING1 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                2                 77
  CLUS_3                1                 72
  CLUS_4                2                 80
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPING1 MUTATED        2      2      3      1
  SERPING1 WILD-TYPE    125     49     68     68
D1108V4, multiclass
        clus
vv       SERPING1 MUTATED SERPING1 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                2                 49
  CLUS_3                3                 68
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPING1 MUTATED        1      2      4      1      0
  SERPING1 WILD-TYPE     83     83     81     68     47
D1108V5, multiclass
        clus
vv       SERPING1 MUTATED SERPING1 WILD-TYPE
  CLUS_1                1                 83
  CLUS_2                2                 83
  CLUS_3                4                 81
  CLUS_4                1                 68
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPING1 MUTATED        2      2      1      3
  SERPING1 WILD-TYPE     93     72    120     77
D1108V6, multiclass
        clus
vv       SERPING1 MUTATED SERPING1 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                2                 72
  CLUS_3                1                120
  CLUS_4                3                 77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERPING1 MUTATED        0      0      3      4      0      1
  SERPING1 WILD-TYPE     52     64     69    100     40     58
D1108V7, multiclass
        clus
vv       SERPING1 MUTATED SERPING1 WILD-TYPE
  CLUS_1                0                 52
  CLUS_2                0                 64
  CLUS_3                3                 69
  CLUS_4                4                100
  CLUS_5                0                 40
  CLUS_6                1                 58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPING1 MUTATED        5      1      2
  SERPING1 WILD-TYPE    212     74     97
D1108V8, multiclass
        clus
vv       SERPING1 MUTATED SERPING1 WILD-TYPE
  CLUS_1                5                212
  CLUS_2                1                 74
  CLUS_3                2                 97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPING1 MUTATED        1      3      1
  SERPING1 WILD-TYPE    120    105     71
D1108V9, multiclass
        clus
vv       SERPING1 MUTATED SERPING1 WILD-TYPE
  CLUS_1                1                120
  CLUS_2                3                105
  CLUS_3                1                 71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPING1 MUTATED        2      1      0      1      1
  SERPING1 WILD-TYPE     86     65     45     54     46
D1108V10, multiclass
        clus
vv       SERPING1 MUTATED SERPING1 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                1                 65
  CLUS_3                0                 45
  CLUS_4                1                 54
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1109) Variable = TNFRSF13B MUTATION ANALYSIS
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF13B MUTATED        1      5      1      0
  TNFRSF13B WILD-TYPE    203    132     46      3
D1109V1, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 1                 203
  CLUS_2                 5                 132
  CLUS_3                 1                  46
  CLUS_4                 0                   3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFRSF13B MUTATED        0      3      1      2      1
  TNFRSF13B WILD-TYPE     39     93     43     86     79
D1109V2, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 0                  39
  CLUS_2                 3                  93
  CLUS_3                 1                  43
  CLUS_4                 2                  86
  CLUS_5                 1                  79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFRSF13B MUTATED        0      2      1      2      0
  TNFRSF13B WILD-TYPE     26     77     72     80     58
D1109V3, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 0                  26
  CLUS_2                 2                  77
  CLUS_3                 1                  72
  CLUS_4                 2                  80
  CLUS_5                 0                  58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF13B MUTATED        2      2      1      0
  TNFRSF13B WILD-TYPE    125     49     70     69
D1109V4, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 2                 125
  CLUS_2                 2                  49
  CLUS_3                 1                  70
  CLUS_4                 0                  69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFRSF13B MUTATED        1      0      4      0      2
  TNFRSF13B WILD-TYPE     83     85     81     69     45
D1109V5, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 1                  83
  CLUS_2                 0                  85
  CLUS_3                 4                  81
  CLUS_4                 0                  69
  CLUS_5                 2                  45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNFRSF13B MUTATED        1      0      2      4
  TNFRSF13B WILD-TYPE     94     74    119     76
D1109V6, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 1                  94
  CLUS_2                 0                  74
  CLUS_3                 2                 119
  CLUS_4                 4                  76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNFRSF13B MUTATED        3      1      1      0      1      1
  TNFRSF13B WILD-TYPE     49     63     71    104     39     58
D1109V7, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 3                  49
  CLUS_2                 1                  63
  CLUS_3                 1                  71
  CLUS_4                 0                 104
  CLUS_5                 1                  39
  CLUS_6                 1                  58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  TNFRSF13B MUTATED        6      0      1
  TNFRSF13B WILD-TYPE    211     75     98
D1109V8, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 6                 211
  CLUS_2                 0                  75
  CLUS_3                 1                  98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3
  TNFRSF13B MUTATED        5      1      1
  TNFRSF13B WILD-TYPE    116    107     71
D1109V9, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 5                 116
  CLUS_2                 1                 107
  CLUS_3                 1                  71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                     vv
clus                  CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNFRSF13B MUTATED        2      0      2      0      3
  TNFRSF13B WILD-TYPE     86     66     43     55     44
D1109V10, multiclass
        clus
vv       TNFRSF13B MUTATED TNFRSF13B WILD-TYPE
  CLUS_1                 2                  86
  CLUS_2                 0                  66
  CLUS_3                 2                  43
  CLUS_4                 0                  55
  CLUS_5                 3                  44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1110) Variable = ABCC1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC1 MUTATED        2     11      1      0
  ABCC1 WILD-TYPE    202    126     46      3
D1110V1, multiclass
        clus
vv       ABCC1 MUTATED ABCC1 WILD-TYPE
  CLUS_1             2             202
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC1 MUTATED        0     10      1      1      0
  ABCC1 WILD-TYPE     39     86     43     87     80
D1110V2, multiclass
        clus
vv       ABCC1 MUTATED ABCC1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2            10              86
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC1 MUTATED        0      4      5      1      3
  ABCC1 WILD-TYPE     26     75     68     81     55
D1110V3, multiclass
        clus
vv       ABCC1 MUTATED ABCC1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             5              68
  CLUS_4             1              81
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC1 MUTATED        3      9      1      0
  ABCC1 WILD-TYPE    124     42     70     69
D1110V4, multiclass
        clus
vv       ABCC1 MUTATED ABCC1 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             9              42
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC1 MUTATED        1      3      7      0      2
  ABCC1 WILD-TYPE     83     82     78     69     45
D1110V5, multiclass
        clus
vv       ABCC1 MUTATED ABCC1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             7              78
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCC1 MUTATED        1      3      1      8
  ABCC1 WILD-TYPE     94     71    120     72
D1110V6, multiclass
        clus
vv       ABCC1 MUTATED ABCC1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             3              71
  CLUS_3             1             120
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ABCC1 MUTATED        3      3      3      5      0      0
  ABCC1 WILD-TYPE     49     61     69     99     40     59
D1110V7, multiclass
        clus
vv       ABCC1 MUTATED ABCC1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             3              61
  CLUS_3             3              69
  CLUS_4             5              99
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC1 MUTATED       12      2      0
  ABCC1 WILD-TYPE    205     73     99
D1110V8, multiclass
        clus
vv       ABCC1 MUTATED ABCC1 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             2              73
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCC1 MUTATED        5      3      3
  ABCC1 WILD-TYPE    116    105     69
D1110V9, multiclass
        clus
vv       ABCC1 MUTATED ABCC1 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             3             105
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCC1 MUTATED        3      3      1      0      4
  ABCC1 WILD-TYPE     85     63     44     55     43
D1110V10, multiclass
        clus
vv       ABCC1 MUTATED ABCC1 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             3              63
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1111) Variable = CD1E MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD1E MUTATED        7      3      1      0
  CD1E WILD-TYPE    197    134     46      3
D1111V1, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            7            197
  CLUS_2            3            134
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD1E MUTATED        0      5      0      2      2
  CD1E WILD-TYPE     39     91     44     86     78
D1111V2, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            0             39
  CLUS_2            5             91
  CLUS_3            0             44
  CLUS_4            2             86
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD1E MUTATED        2      2      3      1      2
  CD1E WILD-TYPE     24     77     70     81     56
D1111V3, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            2             24
  CLUS_2            2             77
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD1E MUTATED        5      2      1      2
  CD1E WILD-TYPE    122     49     70     67
D1111V4, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            5            122
  CLUS_2            2             49
  CLUS_3            1             70
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD1E MUTATED        3      1      3      2      1
  CD1E WILD-TYPE     81     84     82     67     46
D1111V5, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            3             81
  CLUS_2            1             84
  CLUS_3            3             82
  CLUS_4            2             67
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD1E MUTATED        2      2      4      2
  CD1E WILD-TYPE     93     72    117     78
D1111V6, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            2             93
  CLUS_2            2             72
  CLUS_3            4            117
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD1E MUTATED        1      1      2      1      2      4
  CD1E WILD-TYPE     51     63     70    103     38     55
D1111V7, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            1             51
  CLUS_2            1             63
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            2             38
  CLUS_6            4             55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD1E MUTATED        6      1      4
  CD1E WILD-TYPE    211     74     95
D1111V8, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            6            211
  CLUS_2            1             74
  CLUS_3            4             95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CD1E MUTATED        4      3      1
  CD1E WILD-TYPE    117    105     71
D1111V9, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            4            117
  CLUS_2            3            105
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD1E MUTATED        2      2      0      2      2
  CD1E WILD-TYPE     86     64     45     53     45
D1111V10, multiclass
        clus
vv       CD1E MUTATED CD1E WILD-TYPE
  CLUS_1            2             86
  CLUS_2            2             64
  CLUS_3            0             45
  CLUS_4            2             53
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1112) Variable = ATG9A MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG9A MUTATED        2      8      1      0
  ATG9A WILD-TYPE    202    129     46      3
D1112V1, multiclass
        clus
vv       ATG9A MUTATED ATG9A WILD-TYPE
  CLUS_1             2             202
  CLUS_2             8             129
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATG9A MUTATED        1      6      0      0      2
  ATG9A WILD-TYPE     38     90     44     88     78
D1112V2, multiclass
        clus
vv       ATG9A MUTATED ATG9A WILD-TYPE
  CLUS_1             1              38
  CLUS_2             6              90
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATG9A MUTATED        0      3      4      0      3
  ATG9A WILD-TYPE     26     76     69     82     55
D1112V3, multiclass
        clus
vv       ATG9A MUTATED ATG9A WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG9A MUTATED        1      7      2      0
  ATG9A WILD-TYPE    126     44     69     69
D1112V4, multiclass
        clus
vv       ATG9A MUTATED ATG9A WILD-TYPE
  CLUS_1             1             126
  CLUS_2             7              44
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATG9A MUTATED        0      3      5      1      1
  ATG9A WILD-TYPE     84     82     80     68     46
D1112V5, multiclass
        clus
vv       ATG9A MUTATED ATG9A WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATG9A MUTATED        2      1      1      6
  ATG9A WILD-TYPE     93     73    120     74
D1112V6, multiclass
        clus
vv       ATG9A MUTATED ATG9A WILD-TYPE
  CLUS_1             2              93
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             6              74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATG9A MUTATED        3      3      2      1      2      0
  ATG9A WILD-TYPE     49     61     70    103     38     59
D1112V7, multiclass
        clus
vv       ATG9A MUTATED ATG9A WILD-TYPE
  CLUS_1             3              49
  CLUS_2             3              61
  CLUS_3             2              70
  CLUS_4             1             103
  CLUS_5             2              38
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG9A MUTATED        7      2      2
  ATG9A WILD-TYPE    210     73     97
D1112V8, multiclass
        clus
vv       ATG9A MUTATED ATG9A WILD-TYPE
  CLUS_1             7             210
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATG9A MUTATED        4      2      2
  ATG9A WILD-TYPE    117    106     70
D1112V9, multiclass
        clus
vv       ATG9A MUTATED ATG9A WILD-TYPE
  CLUS_1             4             117
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATG9A MUTATED        3      1      1      0      3
  ATG9A WILD-TYPE     85     65     44     55     44
D1112V10, multiclass
        clus
vv       ATG9A MUTATED ATG9A WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1113) Variable = IGBP1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGBP1 MUTATED        1      5      0      0
  IGBP1 WILD-TYPE    203    132     47      3
D1113V1, multiclass
        clus
vv       IGBP1 MUTATED IGBP1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             5             132
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGBP1 MUTATED        0      0      4      1      1
  IGBP1 WILD-TYPE     39     96     40     87     79
D1113V2, multiclass
        clus
vv       IGBP1 MUTATED IGBP1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             0              96
  CLUS_3             4              40
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGBP1 MUTATED        0      4      1      0      0
  IGBP1 WILD-TYPE     26     75     72     82     58
D1113V3, multiclass
        clus
vv       IGBP1 MUTATED IGBP1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             4              75
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGBP1 MUTATED        1      1      3      0
  IGBP1 WILD-TYPE    126     50     68     69
D1113V4, multiclass
        clus
vv       IGBP1 MUTATED IGBP1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             1              50
  CLUS_3             3              68
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGBP1 MUTATED        2      0      3      0      0
  IGBP1 WILD-TYPE     82     85     82     69     47
D1113V5, multiclass
        clus
vv       IGBP1 MUTATED IGBP1 WILD-TYPE
  CLUS_1             2              82
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGBP1 MUTATED        0      0      4      1
  IGBP1 WILD-TYPE     95     74    117     79
D1113V6, multiclass
        clus
vv       IGBP1 MUTATED IGBP1 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             0              74
  CLUS_3             4             117
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  IGBP1 MUTATED        0      1      3      1      0      1
  IGBP1 WILD-TYPE     52     63     69    103     40     58
D1113V7, multiclass
        clus
vv       IGBP1 MUTATED IGBP1 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             1              63
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGBP1 MUTATED        4      0      2
  IGBP1 WILD-TYPE    213     75     97
D1113V8, multiclass
        clus
vv       IGBP1 MUTATED IGBP1 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGBP1 MUTATED        4      1      1
  IGBP1 WILD-TYPE    117    107     71
D1113V9, multiclass
        clus
vv       IGBP1 MUTATED IGBP1 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGBP1 MUTATED        0      1      1      1      3
  IGBP1 WILD-TYPE     88     65     44     54     44
D1113V10, multiclass
        clus
vv       IGBP1 MUTATED IGBP1 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1114) Variable = HIVEP2 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP2 MUTATED        8     18      1      0
  HIVEP2 WILD-TYPE    196    119     46      3
D1114V1, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              8              196
  CLUS_2             18              119
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP2 MUTATED        1     14      2      1      4
  HIVEP2 WILD-TYPE     38     82     42     87     76
D1114V2, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              1               38
  CLUS_2             14               82
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              4               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP2 MUTATED        2      9      3      3      4
  HIVEP2 WILD-TYPE     24     70     70     79     54
D1114V3, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              9               70
  CLUS_3              3               70
  CLUS_4              3               79
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP2 MUTATED        5      8      6      2
  HIVEP2 WILD-TYPE    122     43     65     67
D1114V4, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              5              122
  CLUS_2              8               43
  CLUS_3              6               65
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP2 MUTATED        3      4     13      3      2
  HIVEP2 WILD-TYPE     81     81     72     66     45
D1114V5, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              3               81
  CLUS_2              4               81
  CLUS_3             13               72
  CLUS_4              3               66
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HIVEP2 MUTATED        9      1      5     10
  HIVEP2 WILD-TYPE     86     73    116     70
D1114V6, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              9               86
  CLUS_2              1               73
  CLUS_3              5              116
  CLUS_4             10               70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  HIVEP2 MUTATED        7      8      5      3      2      2
  HIVEP2 WILD-TYPE     45     56     67    101     38     57
D1114V7, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              7               45
  CLUS_2              8               56
  CLUS_3              5               67
  CLUS_4              3              101
  CLUS_5              2               38
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP2 MUTATED       20      2      5
  HIVEP2 WILD-TYPE    197     73     94
D1114V8, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1             20              197
  CLUS_2              2               73
  CLUS_3              5               94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  HIVEP2 MUTATED       10      3      6
  HIVEP2 WILD-TYPE    111    105     66
D1114V9, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1             10              111
  CLUS_2              3              105
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HIVEP2 MUTATED        5      0      4      3      7
  HIVEP2 WILD-TYPE     83     66     41     52     40
D1114V10, multiclass
        clus
vv       HIVEP2 MUTATED HIVEP2 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              0               66
  CLUS_3              4               41
  CLUS_4              3               52
  CLUS_5              7               40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1115) Variable = FAM60A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM60A MUTATED        1      2      0      0
  FAM60A WILD-TYPE    203    135     47      3
D1115V1, multiclass
        clus
vv       FAM60A MUTATED FAM60A WILD-TYPE
  CLUS_1              1              203
  CLUS_2              2              135
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM60A MUTATED        1      1      0      0      0
  FAM60A WILD-TYPE     38     95     44     88     80
D1115V2, multiclass
[1] "Remove cluster labels:" "FAM60A MUTATED"        
clus
  FAM60A MUTATED FAM60A WILD-TYPE 
               2              345 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-6452       TCGA-BR-6453 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-7716       TCGA-BR-7717       TCGA-BR-7722       TCGA-BR-7723 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-7851       TCGA-BR-7901       TCGA-BR-7957       TCGA-BR-7958 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-7959       TCGA-BR-8058       TCGA-BR-8059       TCGA-BR-8060 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8077       TCGA-BR-8078       TCGA-BR-8080       TCGA-BR-8081 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8284       TCGA-BR-8285       TCGA-BR-8286       TCGA-BR-8289 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8366       TCGA-BR-8367       TCGA-BR-8368       TCGA-BR-8369 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8370       TCGA-BR-8371       TCGA-BR-8372       TCGA-BR-8373 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8380       TCGA-BR-8381       TCGA-BR-8382       TCGA-BR-8384 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8483       TCGA-BR-8484       TCGA-BR-8485       TCGA-BR-8486 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8589       TCGA-BR-8590 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8686       TCGA-BR-8687       TCGA-BR-8690 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A44T       TCGA-BR-A44U       TCGA-BR-A452       TCGA-BR-A453 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A4CQ       TCGA-BR-A4CR       TCGA-BR-A4CS       TCGA-BR-A4IU 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A4IV       TCGA-BR-A4IY       TCGA-BR-A4IZ       TCGA-BR-A4J1 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A4J2       TCGA-BR-A4J4       TCGA-BR-A4J5       TCGA-BR-A4J6 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4PE 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A4PF       TCGA-BR-A4QI       TCGA-BR-A4QM       TCGA-CD-5798 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-5799       TCGA-CD-5800       TCGA-CD-5801       TCGA-CD-5802 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-5803       TCGA-CD-5804       TCGA-CD-5813       TCGA-CD-8524 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-8525       TCGA-CD-8526       TCGA-CD-8527       TCGA-CD-8528 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531       TCGA-CD-8532 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-8533       TCGA-CD-8534       TCGA-CD-8535       TCGA-CD-8536 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489       TCGA-CD-A48A 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-A4MJ       TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-5716 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-8573       TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-8578       TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-A4YV       TCGA-D7-A4YX       TCGA-D7-A4YY       TCGA-D7-A4Z0 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-A6ET       TCGA-D7-A6EV       TCGA-D7-A6EX       TCGA-D7-A6EY 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-A6EZ       TCGA-D7-A6F0       TCGA-D7-A6F2       TCGA-D7-A747 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-A748       TCGA-D7-A74A       TCGA-D7-A74B       TCGA-EQ-5647 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-EQ-8122       TCGA-EQ-A4SO       TCGA-F1-6177       TCGA-F1-6874 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-F1-6875       TCGA-F1-A448       TCGA-F1-A72C       TCGA-FP-7735 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7916       TCGA-FP-7998       TCGA-FP-8099 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-FP-8209       TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-FP-A4BE       TCGA-FP-A4BF       TCGA-FP-A8CX       TCGA-FP-A9TM 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HF-7131       TCGA-HF-7132       TCGA-HF-7133       TCGA-HF-7134 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HF-7136       TCGA-HF-A5NB       TCGA-HJ-7597       TCGA-HU-8238 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-8243       TCGA-HU-8244       TCGA-HU-8249       TCGA-HU-8602 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-8610       TCGA-HU-A4G2 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-A4G3       TCGA-HU-A4G6       TCGA-HU-A4G8       TCGA-HU-A4G9 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-A4GC       TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-A4GJ       TCGA-HU-A4GN       TCGA-HU-A4GP       TCGA-HU-A4GQ 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-A4GT       TCGA-HU-A4GU       TCGA-HU-A4GX       TCGA-HU-A4GY 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-A4H0       TCGA-HU-A4H2       TCGA-HU-A4H3       TCGA-HU-A4H4 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8       TCGA-HU-A4HB 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-A4HD       TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-IN-8663       TCGA-IN-A6RI       TCGA-IN-A6RJ       TCGA-IN-A6RL 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-IN-A6RN       TCGA-IN-A6RO       TCGA-IN-A6RP       TCGA-IN-A6RR 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-IN-A6RS       TCGA-IN-A7NR       TCGA-IN-A7NT       TCGA-IN-A7NU 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-IN-AB1V       TCGA-IN-AB1X       TCGA-KB-A6F5       TCGA-KB-A6F7 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-KB-A93G       TCGA-KB-A93J       TCGA-MX-A5UG       TCGA-MX-A5UJ 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-MX-A663       TCGA-MX-A666       TCGA-R5-A7O7       TCGA-R5-A7ZE 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-R5-A7ZF       TCGA-R5-A7ZI       TCGA-R5-A7ZR       TCGA-R5-A804 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-R5-A805       TCGA-RD-A7BS       TCGA-RD-A7BT       TCGA-RD-A7BW 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-RD-A7C1       TCGA-RD-A8MV       TCGA-RD-A8MW       TCGA-RD-A8N0 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-RD-A8N1       TCGA-RD-A8N2       TCGA-RD-A8N4       TCGA-RD-A8N5 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA       TCGA-SW-A7EB 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-A8DL       TCGA-VQ-A8DT       TCGA-VQ-A8DU       TCGA-VQ-A8DV 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-A8DZ       TCGA-VQ-A8E2       TCGA-VQ-A8E7       TCGA-VQ-A8P2 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-A8P3       TCGA-VQ-A8PE       TCGA-VQ-A8PK       TCGA-VQ-A8PM 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-A8PQ       TCGA-VQ-A91Q       TCGA-VQ-A91U       TCGA-VQ-A91V 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-A92D       TCGA-VQ-A94T       TCGA-VQ-AA64       TCGA-VQ-AA68 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-AA69       TCGA-VQ-AA6A       TCGA-VQ-AA6B       TCGA-VQ-AA6F 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-AA6G       TCGA-VQ-AA6I       TCGA-VQ-AA6J       TCGA-VQ-AA6K 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-ZA-A8F6 
"FAM60A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM60A MUTATED        0      0      0      1      2
  FAM60A WILD-TYPE     26     79     73     81     56
D1115V3, multiclass
        clus
vv       FAM60A MUTATED FAM60A WILD-TYPE
  CLUS_1              0               26
  CLUS_2              0               79
  CLUS_3              0               73
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM60A MUTATED        0      2      0      1
  FAM60A WILD-TYPE    127     49     71     68
D1115V4, multiclass
        clus
vv       FAM60A MUTATED FAM60A WILD-TYPE
  CLUS_1              0              127
  CLUS_2              2               49
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM60A MUTATED        1      1      0      0      1
  FAM60A WILD-TYPE     83     84     85     69     46
D1115V5, multiclass
        clus
vv       FAM60A MUTATED FAM60A WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              0               85
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM60A MUTATED        0      1      1      1
  FAM60A WILD-TYPE     95     73    120     79
D1115V6, multiclass
        clus
vv       FAM60A MUTATED FAM60A WILD-TYPE
  CLUS_1              0               95
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAM60A MUTATED        1      1      1      0      0      0
  FAM60A WILD-TYPE     51     63     71    104     40     59
D1115V7, multiclass
        clus
vv       FAM60A MUTATED FAM60A WILD-TYPE
  CLUS_1              1               51
  CLUS_2              1               63
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM60A MUTATED        3      0      0
  FAM60A WILD-TYPE    214     75     99
D1115V8, multiclass
        clus
vv       FAM60A MUTATED FAM60A WILD-TYPE
  CLUS_1              3              214
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM60A MUTATED        2      0      0
  FAM60A WILD-TYPE    119    108     72
D1115V9, multiclass
[1] "Remove cluster labels:" "FAM60A MUTATED"        
clus
  FAM60A MUTATED FAM60A WILD-TYPE 
               2              299 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-6452       TCGA-BR-6453 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8060       TCGA-BR-8077       TCGA-BR-8078 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8485 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8590 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J5       TCGA-BR-A4J6 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534       TCGA-CD-8535 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5716 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576       TCGA-D7-8578 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU       TCGA-D7-A4YV 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-D7-A6ET       TCGA-D7-A6EV 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-A6EX       TCGA-D7-A6EY       TCGA-D7-A6EZ       TCGA-D7-A6F0 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-A6F2       TCGA-D7-A747       TCGA-D7-A748       TCGA-D7-A74A 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-A74B       TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-FP-A9TM       TCGA-HF-7131       TCGA-HF-7132       TCGA-HF-7134 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HF-7136       TCGA-HU-8238       TCGA-HU-8243       TCGA-HU-8602 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-A4GC       TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-A4GJ       TCGA-HU-A4GN       TCGA-HU-A4GQ       TCGA-HU-A4GT 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H4 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8       TCGA-HU-A4HB 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-IN-A6RI       TCGA-IN-A6RJ       TCGA-IN-A6RL       TCGA-IN-A6RN 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-IN-A6RP       TCGA-IN-A7NR       TCGA-IN-A7NT       TCGA-IN-A7NU 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-IN-AB1V       TCGA-IN-AB1X       TCGA-KB-A6F5       TCGA-KB-A6F7 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-KB-A93J       TCGA-MX-A5UG       TCGA-MX-A5UJ       TCGA-MX-A663 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-MX-A666       TCGA-R5-A7O7       TCGA-R5-A7ZE       TCGA-R5-A7ZF 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-R5-A7ZI       TCGA-R5-A7ZR       TCGA-R5-A804       TCGA-R5-A805 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-RD-A7BS       TCGA-RD-A7BW       TCGA-RD-A7C1       TCGA-RD-A8MV 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1       TCGA-RD-A8N5 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA       TCGA-SW-A7EB 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-A8DL       TCGA-VQ-A8DU       TCGA-VQ-A8DV       TCGA-VQ-A8E2 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-A8E7       TCGA-VQ-A8P2       TCGA-VQ-A8P3       TCGA-VQ-A8PE 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ       TCGA-VQ-A91Q 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D       TCGA-VQ-A94T 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-AA64       TCGA-VQ-AA68       TCGA-VQ-AA69       TCGA-VQ-AA6A 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-AA6B       TCGA-VQ-AA6F       TCGA-VQ-AA6G       TCGA-VQ-AA6I 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-AA6J       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM60A MUTATED        1      0      0      0      1
  FAM60A WILD-TYPE     87     66     45     55     46
D1115V10, multiclass
[1] "Remove cluster labels:" "FAM60A MUTATED"        
clus
  FAM60A MUTATED FAM60A WILD-TYPE 
               2              299 
      TCGA-B7-5816       TCGA-B7-5818       TCGA-B7-A5TI       TCGA-B7-A5TJ 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-B7-A5TK       TCGA-B7-A5TN       TCGA-BR-6452       TCGA-BR-6453 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-6454       TCGA-BR-6455       TCGA-BR-6456       TCGA-BR-6457 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-6458       TCGA-BR-6563       TCGA-BR-6564       TCGA-BR-6565 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-6566       TCGA-BR-6705       TCGA-BR-6706       TCGA-BR-6707 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-6709       TCGA-BR-6710       TCGA-BR-6801       TCGA-BR-6802 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-6803       TCGA-BR-6852       TCGA-BR-7196       TCGA-BR-7197 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-7703       TCGA-BR-7704       TCGA-BR-7707       TCGA-BR-7715 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-7717       TCGA-BR-7723       TCGA-BR-7851       TCGA-BR-7901 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-7957       TCGA-BR-7958       TCGA-BR-7959       TCGA-BR-8058 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8059       TCGA-BR-8060       TCGA-BR-8077       TCGA-BR-8078 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8080       TCGA-BR-8284       TCGA-BR-8286       TCGA-BR-8289 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8291       TCGA-BR-8295       TCGA-BR-8297       TCGA-BR-8360 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8361       TCGA-BR-8363       TCGA-BR-8364       TCGA-BR-8365 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8368       TCGA-BR-8369       TCGA-BR-8370       TCGA-BR-8371 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8372       TCGA-BR-8373       TCGA-BR-8380       TCGA-BR-8381 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8382       TCGA-BR-8384       TCGA-BR-8483       TCGA-BR-8485 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8486       TCGA-BR-8487       TCGA-BR-8588       TCGA-BR-8590 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8591       TCGA-BR-8592       TCGA-BR-8676       TCGA-BR-8677 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8678       TCGA-BR-8679       TCGA-BR-8680       TCGA-BR-8682 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-8683       TCGA-BR-8687       TCGA-BR-8690       TCGA-BR-A44T 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A452       TCGA-BR-A453       TCGA-BR-A4CQ       TCGA-BR-A4CR 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A4CS       TCGA-BR-A4IU       TCGA-BR-A4IV       TCGA-BR-A4IY 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A4IZ       TCGA-BR-A4J1       TCGA-BR-A4J5       TCGA-BR-A4J6 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A4J7       TCGA-BR-A4J8       TCGA-BR-A4PD       TCGA-BR-A4QI 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-BR-A4QM       TCGA-CD-5798       TCGA-CD-5799       TCGA-CD-5800 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-5801       TCGA-CD-5802       TCGA-CD-5803       TCGA-CD-5804 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-5813       TCGA-CD-8524       TCGA-CD-8525       TCGA-CD-8526 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-8527       TCGA-CD-8529       TCGA-CD-8530       TCGA-CD-8531 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-8532       TCGA-CD-8533       TCGA-CD-8534       TCGA-CD-8535 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-8536       TCGA-CD-A486       TCGA-CD-A487       TCGA-CD-A489 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CD-A48C       TCGA-CD-A4MG       TCGA-CD-A4MH       TCGA-CD-A4MI 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CG-4437       TCGA-CG-4441       TCGA-CG-4449       TCGA-CG-5716 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CG-5717       TCGA-CG-5718       TCGA-CG-5719       TCGA-CG-5720 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CG-5721       TCGA-CG-5722       TCGA-CG-5723       TCGA-CG-5724 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CG-5725       TCGA-CG-5726       TCGA-CG-5727       TCGA-CG-5728 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-CG-5730       TCGA-CG-5732       TCGA-CG-5733       TCGA-CG-5734 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-5577       TCGA-D7-5578       TCGA-D7-5579       TCGA-D7-6518 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-6519       TCGA-D7-6520       TCGA-D7-6521       TCGA-D7-6522 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-6524       TCGA-D7-6525       TCGA-D7-6526       TCGA-D7-6527 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-6528       TCGA-D7-6815       TCGA-D7-6817       TCGA-D7-6818 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-6820       TCGA-D7-6822       TCGA-D7-8570       TCGA-D7-8572 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-8574       TCGA-D7-8575       TCGA-D7-8576       TCGA-D7-8578 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-8579       TCGA-D7-A4YT       TCGA-D7-A4YU       TCGA-D7-A4YV 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-A4YY       TCGA-D7-A4Z0       TCGA-D7-A6ET       TCGA-D7-A6EV 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-A6EX       TCGA-D7-A6EY       TCGA-D7-A6EZ       TCGA-D7-A6F0 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-A6F2       TCGA-D7-A747       TCGA-D7-A748       TCGA-D7-A74A 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-D7-A74B       TCGA-EQ-5647       TCGA-EQ-8122       TCGA-F1-6177 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-F1-6874       TCGA-F1-6875       TCGA-F1-A448       TCGA-FP-7735 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-FP-7829       TCGA-FP-7998       TCGA-FP-8099       TCGA-FP-8209 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-FP-8210       TCGA-FP-8211       TCGA-FP-8631       TCGA-FP-A4BE 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-FP-A9TM       TCGA-HF-7131       TCGA-HF-7132       TCGA-HF-7134 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HF-7136       TCGA-HU-8238       TCGA-HU-8243       TCGA-HU-8602 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-8604       TCGA-HU-8608       TCGA-HU-A4G3       TCGA-HU-A4G8 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-A4GC       TCGA-HU-A4GD       TCGA-HU-A4GF       TCGA-HU-A4GH 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-A4GJ       TCGA-HU-A4GN       TCGA-HU-A4GQ       TCGA-HU-A4GT 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-A4GX       TCGA-HU-A4GY       TCGA-HU-A4H2       TCGA-HU-A4H4 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-HU-A4H5       TCGA-HU-A4H6       TCGA-HU-A4H8       TCGA-HU-A4HB 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-IN-7806       TCGA-IN-7808       TCGA-IN-8462       TCGA-IN-8663 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-IN-A6RI       TCGA-IN-A6RJ       TCGA-IN-A6RL       TCGA-IN-A6RN 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-IN-A6RP       TCGA-IN-A7NR       TCGA-IN-A7NT       TCGA-IN-A7NU 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-IN-AB1V       TCGA-IN-AB1X       TCGA-KB-A6F5       TCGA-KB-A6F7 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-KB-A93J       TCGA-MX-A5UG       TCGA-MX-A5UJ       TCGA-MX-A663 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-MX-A666       TCGA-R5-A7O7       TCGA-R5-A7ZE       TCGA-R5-A7ZF 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-R5-A7ZI       TCGA-R5-A7ZR       TCGA-R5-A804       TCGA-R5-A805 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-RD-A7BS       TCGA-RD-A7BW       TCGA-RD-A7C1       TCGA-RD-A8MV 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-RD-A8MW       TCGA-RD-A8N0       TCGA-RD-A8N1       TCGA-RD-A8N5 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-RD-A8N6       TCGA-RD-A8N9       TCGA-SW-A7EA       TCGA-SW-A7EB 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-A8DL       TCGA-VQ-A8DU       TCGA-VQ-A8DV       TCGA-VQ-A8E2 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-A8E7       TCGA-VQ-A8P2       TCGA-VQ-A8P3       TCGA-VQ-A8PE 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-A8PK       TCGA-VQ-A8PM       TCGA-VQ-A8PQ       TCGA-VQ-A91Q 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-A91U       TCGA-VQ-A91V       TCGA-VQ-A92D       TCGA-VQ-A94T 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-AA64       TCGA-VQ-AA68       TCGA-VQ-AA69       TCGA-VQ-AA6A 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-AA6B       TCGA-VQ-AA6F       TCGA-VQ-AA6G       TCGA-VQ-AA6I 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 
      TCGA-VQ-AA6J       TCGA-VQ-AA6K       TCGA-ZA-A8F6 
"FAM60A WILD-TYPE" "FAM60A WILD-TYPE" "FAM60A WILD-TYPE" 

Clustering(1116) Variable = ARV1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARV1 MUTATED        0      4      1      0
  ARV1 WILD-TYPE    204    133     46      3
D1116V1, multiclass
        clus
vv       ARV1 MUTATED ARV1 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            4            133
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARV1 MUTATED        0      4      1      0      0
  ARV1 WILD-TYPE     39     92     43     88     80
D1116V2, multiclass
        clus
vv       ARV1 MUTATED ARV1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARV1 MUTATED        0      0      2      0      1
  ARV1 WILD-TYPE     26     79     71     82     57
D1116V3, multiclass
        clus
vv       ARV1 MUTATED ARV1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             79
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARV1 MUTATED        0      3      0      0
  ARV1 WILD-TYPE    127     48     71     69
D1116V4, multiclass
        clus
vv       ARV1 MUTATED ARV1 WILD-TYPE
  CLUS_1            0            127
  CLUS_2            3             48
  CLUS_3            0             71
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARV1 MUTATED        0      1      2      2      0
  ARV1 WILD-TYPE     84     84     83     67     47
D1116V5, multiclass
        clus
vv       ARV1 MUTATED ARV1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            2             83
  CLUS_4            2             67
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARV1 MUTATED        3      0      0      2
  ARV1 WILD-TYPE     92     74    121     78
D1116V6, multiclass
        clus
vv       ARV1 MUTATED ARV1 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            0             74
  CLUS_3            0            121
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARV1 MUTATED        1      0      1      1      2      0
  ARV1 WILD-TYPE     51     64     71    103     38     59
D1116V7, multiclass
        clus
vv       ARV1 MUTATED ARV1 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            0             64
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ARV1 MUTATED        4      0      1
  ARV1 WILD-TYPE    213     75     98
D1116V8, multiclass
        clus
vv       ARV1 MUTATED ARV1 WILD-TYPE
  CLUS_1            4            213
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ARV1 MUTATED        2      1      1
  ARV1 WILD-TYPE    119    107     71
D1116V9, multiclass
        clus
vv       ARV1 MUTATED ARV1 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            1            107
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARV1 MUTATED        2      0      1      0      1
  ARV1 WILD-TYPE     86     66     44     55     46
D1116V10, multiclass
        clus
vv       ARV1 MUTATED ARV1 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            1             44
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1117) Variable = ERI1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERI1 MUTATED        3      1      0      0
  ERI1 WILD-TYPE    201    136     47      3
D1117V1, multiclass
        clus
vv       ERI1 MUTATED ERI1 WILD-TYPE
  CLUS_1            3            201
  CLUS_2            1            136
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERI1 MUTATED        0      0      0      2      0
  ERI1 WILD-TYPE     39     96     44     86     80
D1117V2, multiclass
[1] "Remove cluster labels:" "ERI1 MUTATED"          
clus
  ERI1 MUTATED ERI1 WILD-TYPE 
             2            345 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-7703     TCGA-BR-7704     TCGA-BR-7707     TCGA-BR-7715 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8060 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8078     TCGA-BR-8080     TCGA-BR-8081 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8284     TCGA-BR-8285     TCGA-BR-8286     TCGA-BR-8289 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8360 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8366     TCGA-BR-8367     TCGA-BR-8368     TCGA-BR-8369 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8483     TCGA-BR-8484     TCGA-BR-8485     TCGA-BR-8486 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8589     TCGA-BR-8590 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8686     TCGA-BR-8687     TCGA-BR-8690 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A44T     TCGA-BR-A44U     TCGA-BR-A452     TCGA-BR-A453 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A4CQ     TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A4J2     TCGA-BR-A4J4     TCGA-BR-A4J5     TCGA-BR-A4J6 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4PE 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A4PF     TCGA-BR-A4QI     TCGA-BR-A4QL     TCGA-BR-A4QM 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800     TCGA-CD-5801 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804     TCGA-CD-5813 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8527 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-8528     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8533     TCGA-CD-8534     TCGA-CD-8535 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-A48A     TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4437     TCGA-CG-4441 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CG-5716     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8573     TCGA-D7-8574     TCGA-D7-8575 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-D7-A6ET     TCGA-D7-A6EV     TCGA-D7-A6EX 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-A6EY     TCGA-D7-A6EZ     TCGA-D7-A6F0     TCGA-D7-A6F2 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-A747     TCGA-D7-A748     TCGA-D7-A74A     TCGA-D7-A74B 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-EQ-5647     TCGA-EQ-8122     TCGA-EQ-A4SO     TCGA-F1-6177 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448     TCGA-F1-A72C 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7916     TCGA-FP-7998 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-FP-8631     TCGA-FP-A4BE     TCGA-FP-A4BF     TCGA-FP-A8CX 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-FP-A9TM     TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7133 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HF-7134     TCGA-HF-7136     TCGA-HF-A5NB     TCGA-HJ-7597 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-8238     TCGA-HU-8243     TCGA-HU-8244     TCGA-HU-8249 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608     TCGA-HU-8610 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4G2     TCGA-HU-A4G3     TCGA-HU-A4G6     TCGA-HU-A4G8 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4G9     TCGA-HU-A4GC     TCGA-HU-A4GD     TCGA-HU-A4GF 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4GH     TCGA-HU-A4GJ     TCGA-HU-A4GN     TCGA-HU-A4GP 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GU     TCGA-HU-A4GX 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H0     TCGA-HU-A4H2     TCGA-HU-A4H3 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4HB     TCGA-HU-A4HD     TCGA-IN-7806     TCGA-IN-7808 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-IN-8462     TCGA-IN-8663     TCGA-IN-A6RI     TCGA-IN-A6RJ 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-IN-A6RL     TCGA-IN-A6RN     TCGA-IN-A6RO     TCGA-IN-A6RP 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-IN-A6RR     TCGA-IN-A6RS     TCGA-IN-A7NR     TCGA-IN-A7NT 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-IN-A7NU     TCGA-IN-AB1V     TCGA-IN-AB1X     TCGA-IP-7968 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-KB-A6F5     TCGA-KB-A6F7     TCGA-KB-A93G     TCGA-KB-A93J 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-MX-A5UG     TCGA-MX-A5UJ     TCGA-MX-A663     TCGA-MX-A666 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-R5-A7O7     TCGA-R5-A7ZE     TCGA-R5-A7ZF     TCGA-R5-A7ZI 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-R5-A7ZR     TCGA-R5-A804     TCGA-R5-A805     TCGA-RD-A7BS 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-RD-A7BT     TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-RD-A8N2 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-RD-A8N4     TCGA-RD-A8N5     TCGA-RD-A8N6     TCGA-RD-A8N9 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-SW-A7EA     TCGA-SW-A7EB     TCGA-VQ-A8DT     TCGA-VQ-A8DU 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-A8DV     TCGA-VQ-A8DZ     TCGA-VQ-A8E2     TCGA-VQ-A8E7 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-A8P2     TCGA-VQ-A8P3     TCGA-VQ-A8PE     TCGA-VQ-A8PK 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-A8PM     TCGA-VQ-A8PQ     TCGA-VQ-A91Q     TCGA-VQ-A91U 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-A94T     TCGA-VQ-AA64 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-AA68     TCGA-VQ-AA69     TCGA-VQ-AA6A     TCGA-VQ-AA6B 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-AA6F     TCGA-VQ-AA6G     TCGA-VQ-AA6I     TCGA-VQ-AA6J 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-AA6K 
"ERI1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERI1 MUTATED        1      3      0      0      0
  ERI1 WILD-TYPE     25     76     73     82     58
D1117V3, multiclass
        clus
vv       ERI1 MUTATED ERI1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            0             73
  CLUS_4            0             82
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERI1 MUTATED        1      0      3      0
  ERI1 WILD-TYPE    126     51     68     69
D1117V4, multiclass
        clus
vv       ERI1 MUTATED ERI1 WILD-TYPE
  CLUS_1            1            126
  CLUS_2            0             51
  CLUS_3            3             68
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERI1 MUTATED        0      1      2      0      0
  ERI1 WILD-TYPE     84     84     83     69     47
D1117V5, multiclass
        clus
vv       ERI1 MUTATED ERI1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            2             83
  CLUS_4            0             69
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ERI1 MUTATED        1      1      1      0
  ERI1 WILD-TYPE     94     73    120     80
D1117V6, multiclass
        clus
vv       ERI1 MUTATED ERI1 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            0             80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ERI1 MUTATED        0      2      1      1      0      0
  ERI1 WILD-TYPE     52     62     71    103     40     59
D1117V7, multiclass
        clus
vv       ERI1 MUTATED ERI1 WILD-TYPE
  CLUS_1            0             52
  CLUS_2            2             62
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERI1 MUTATED        3      1      0
  ERI1 WILD-TYPE    214     74     99
D1117V8, multiclass
        clus
vv       ERI1 MUTATED ERI1 WILD-TYPE
  CLUS_1            3            214
  CLUS_2            1             74
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ERI1 MUTATED        1      1      0
  ERI1 WILD-TYPE    120    107     72
D1117V9, multiclass
[1] "Remove cluster labels:" "ERI1 MUTATED"          
clus
  ERI1 MUTATED ERI1 WILD-TYPE 
             2            299 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-7703     TCGA-BR-7704     TCGA-BR-7707     TCGA-BR-7715 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8060     TCGA-BR-8077     TCGA-BR-8078 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8360 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J5     TCGA-BR-A4J6 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8533     TCGA-CD-8534 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-A489     TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-A4MI     TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-4449 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CG-5716     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-D7-A6ET 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-A6EV     TCGA-D7-A6EX     TCGA-D7-A6EY     TCGA-D7-A6EZ 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-A6F0     TCGA-D7-A6F2     TCGA-D7-A747     TCGA-D7-A748 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-A74A     TCGA-D7-A74B     TCGA-EQ-5647     TCGA-EQ-8122 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7998     TCGA-FP-8099 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211     TCGA-FP-8631 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-FP-A4BE     TCGA-FP-A9TM     TCGA-HF-7131     TCGA-HF-7132 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HF-7134     TCGA-HF-7136     TCGA-HU-8238     TCGA-HU-8243 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608     TCGA-HU-A4G3 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4G8     TCGA-HU-A4GC     TCGA-HU-A4GD     TCGA-HU-A4GF 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4GH     TCGA-HU-A4GJ     TCGA-HU-A4GN     TCGA-HU-A4GQ 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4HB     TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-IN-8663     TCGA-IN-A6RI     TCGA-IN-A6RJ     TCGA-IN-A6RL 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-IN-A6RN     TCGA-IN-A6RP     TCGA-IN-A7NR     TCGA-IN-A7NT 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-IN-A7NU     TCGA-IN-AB1V     TCGA-IN-AB1X     TCGA-IP-7968 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-KB-A6F5     TCGA-KB-A6F7     TCGA-KB-A93J     TCGA-MX-A5UG 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-MX-A5UJ     TCGA-MX-A663     TCGA-MX-A666     TCGA-R5-A7O7 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-R5-A7ZE     TCGA-R5-A7ZF     TCGA-R5-A7ZI     TCGA-R5-A7ZR 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-R5-A804     TCGA-R5-A805     TCGA-RD-A7BS     TCGA-RD-A7BW 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-RD-A7C1     TCGA-RD-A8MV     TCGA-RD-A8MW     TCGA-RD-A8N0 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-RD-A8N1     TCGA-RD-A8N5     TCGA-RD-A8N6     TCGA-RD-A8N9 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-SW-A7EA     TCGA-SW-A7EB     TCGA-VQ-A8DU     TCGA-VQ-A8DV 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-A8E2     TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-A8PE     TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-A91Q     TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-A94T     TCGA-VQ-AA64     TCGA-VQ-AA68     TCGA-VQ-AA69 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-AA6A     TCGA-VQ-AA6B     TCGA-VQ-AA6F     TCGA-VQ-AA6G 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-AA6I     TCGA-VQ-AA6J     TCGA-VQ-AA6K 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ERI1 MUTATED        1      1      0      0      0
  ERI1 WILD-TYPE     87     65     45     55     47
D1117V10, multiclass
[1] "Remove cluster labels:" "ERI1 MUTATED"          
clus
  ERI1 MUTATED ERI1 WILD-TYPE 
             2            299 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-6566     TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-7703     TCGA-BR-7704     TCGA-BR-7707     TCGA-BR-7715 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-7717     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8060     TCGA-BR-8077     TCGA-BR-8078 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8284     TCGA-BR-8286     TCGA-BR-8289 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8291     TCGA-BR-8295     TCGA-BR-8297     TCGA-BR-8360 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8361     TCGA-BR-8363     TCGA-BR-8364     TCGA-BR-8365 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8485 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588     TCGA-BR-8590 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J5     TCGA-BR-A4J6 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4QI 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8529     TCGA-CD-8530 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8533     TCGA-CD-8534 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-A489     TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CD-A4MI     TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-4449 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CG-5716     TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CG-5720     TCGA-CG-5721     TCGA-CG-5722     TCGA-CG-5723 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CG-5724     TCGA-CG-5725     TCGA-CG-5726     TCGA-CG-5727 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CG-5728     TCGA-CG-5730     TCGA-CG-5732     TCGA-CG-5733 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-CG-5734     TCGA-D7-5577     TCGA-D7-5578     TCGA-D7-5579 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-6518     TCGA-D7-6519     TCGA-D7-6520     TCGA-D7-6521 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-6522     TCGA-D7-6524     TCGA-D7-6525     TCGA-D7-6526 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815     TCGA-D7-6817 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822     TCGA-D7-8570 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-8572     TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-8578     TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-D7-A6ET 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-A6EV     TCGA-D7-A6EX     TCGA-D7-A6EY     TCGA-D7-A6EZ 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-A6F0     TCGA-D7-A6F2     TCGA-D7-A747     TCGA-D7-A748 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-D7-A74A     TCGA-D7-A74B     TCGA-EQ-5647     TCGA-EQ-8122 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-FP-7735     TCGA-FP-7829     TCGA-FP-7998     TCGA-FP-8099 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-FP-8209     TCGA-FP-8210     TCGA-FP-8211     TCGA-FP-8631 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-FP-A4BE     TCGA-FP-A9TM     TCGA-HF-7131     TCGA-HF-7132 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HF-7134     TCGA-HF-7136     TCGA-HU-8238     TCGA-HU-8243 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-8602     TCGA-HU-8604     TCGA-HU-8608     TCGA-HU-A4G3 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4G8     TCGA-HU-A4GC     TCGA-HU-A4GD     TCGA-HU-A4GF 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4GH     TCGA-HU-A4GJ     TCGA-HU-A4GN     TCGA-HU-A4GQ 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4GT     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4H6     TCGA-HU-A4H8 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-HU-A4HB     TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-IN-8663     TCGA-IN-A6RI     TCGA-IN-A6RJ     TCGA-IN-A6RL 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-IN-A6RN     TCGA-IN-A6RP     TCGA-IN-A7NR     TCGA-IN-A7NT 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-IN-A7NU     TCGA-IN-AB1V     TCGA-IN-AB1X     TCGA-IP-7968 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-KB-A6F5     TCGA-KB-A6F7     TCGA-KB-A93J     TCGA-MX-A5UG 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-MX-A5UJ     TCGA-MX-A663     TCGA-MX-A666     TCGA-R5-A7O7 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-R5-A7ZE     TCGA-R5-A7ZF     TCGA-R5-A7ZI     TCGA-R5-A7ZR 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-R5-A804     TCGA-R5-A805     TCGA-RD-A7BS     TCGA-RD-A7BW 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-RD-A7C1     TCGA-RD-A8MV     TCGA-RD-A8MW     TCGA-RD-A8N0 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-RD-A8N1     TCGA-RD-A8N5     TCGA-RD-A8N6     TCGA-RD-A8N9 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-SW-A7EA     TCGA-SW-A7EB     TCGA-VQ-A8DU     TCGA-VQ-A8DV 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-A8E2     TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-A8PE     TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-A91Q     TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-A94T     TCGA-VQ-AA64     TCGA-VQ-AA68     TCGA-VQ-AA69 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-AA6A     TCGA-VQ-AA6B     TCGA-VQ-AA6F     TCGA-VQ-AA6G 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 
    TCGA-VQ-AA6I     TCGA-VQ-AA6J     TCGA-VQ-AA6K 
"ERI1 WILD-TYPE" "ERI1 WILD-TYPE" "ERI1 WILD-TYPE" 

Clustering(1118) Variable = TM9SF3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM9SF3 MUTATED        3     10      0      0
  TM9SF3 WILD-TYPE    201    127     47      3
D1118V1, multiclass
        clus
vv       TM9SF3 MUTATED TM9SF3 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             10              127
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TM9SF3 MUTATED        1      6      2      1      1
  TM9SF3 WILD-TYPE     38     90     42     87     79
D1118V2, multiclass
        clus
vv       TM9SF3 MUTATED TM9SF3 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              6               90
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TM9SF3 MUTATED        1      6      3      0      1
  TM9SF3 WILD-TYPE     25     73     70     82     57
D1118V3, multiclass
        clus
vv       TM9SF3 MUTATED TM9SF3 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              6               73
  CLUS_3              3               70
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM9SF3 MUTATED        4      4      3      0
  TM9SF3 WILD-TYPE    123     47     68     69
D1118V4, multiclass
        clus
vv       TM9SF3 MUTATED TM9SF3 WILD-TYPE
  CLUS_1              4              123
  CLUS_2              4               47
  CLUS_3              3               68
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TM9SF3 MUTATED        3      1      7      2      0
  TM9SF3 WILD-TYPE     81     84     78     67     47
D1118V5, multiclass
        clus
vv       TM9SF3 MUTATED TM9SF3 WILD-TYPE
  CLUS_1              3               81
  CLUS_2              1               84
  CLUS_3              7               78
  CLUS_4              2               67
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TM9SF3 MUTATED        4      0      3      6
  TM9SF3 WILD-TYPE     91     74    118     74
D1118V6, multiclass
        clus
vv       TM9SF3 MUTATED TM9SF3 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              0               74
  CLUS_3              3              118
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TM9SF3 MUTATED        2      2      3      3      1      2
  TM9SF3 WILD-TYPE     50     62     69    101     39     57
D1118V7, multiclass
        clus
vv       TM9SF3 MUTATED TM9SF3 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              2               62
  CLUS_3              3               69
  CLUS_4              3              101
  CLUS_5              1               39
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM9SF3 MUTATED        9      0      4
  TM9SF3 WILD-TYPE    208     75     95
D1118V8, multiclass
        clus
vv       TM9SF3 MUTATED TM9SF3 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              0               75
  CLUS_3              4               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TM9SF3 MUTATED        6      3      1
  TM9SF3 WILD-TYPE    115    105     71
D1118V9, multiclass
        clus
vv       TM9SF3 MUTATED TM9SF3 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              3              105
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TM9SF3 MUTATED        4      0      1      2      3
  TM9SF3 WILD-TYPE     84     66     44     53     44
D1118V10, multiclass
        clus
vv       TM9SF3 MUTATED TM9SF3 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              2               53
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1119) Variable = ATP2C1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2C1 MUTATED        3      8      2      0
  ATP2C1 WILD-TYPE    201    129     45      3
D1119V1, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              8              129
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2C1 MUTATED        1      5      3      0      0
  ATP2C1 WILD-TYPE     38     91     41     88     80
D1119V2, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              5               91
  CLUS_3              3               41
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2C1 MUTATED        0      4      2      2      4
  ATP2C1 WILD-TYPE     26     75     71     80     54
D1119V3, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              2               71
  CLUS_4              2               80
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2C1 MUTATED        2      8      0      2
  ATP2C1 WILD-TYPE    125     43     71     67
D1119V4, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              8               43
  CLUS_3              0               71
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2C1 MUTATED        2      2      7      1      0
  ATP2C1 WILD-TYPE     82     83     78     68     47
D1119V5, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              2               83
  CLUS_3              7               78
  CLUS_4              1               68
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATP2C1 MUTATED        2      2      3      5
  ATP2C1 WILD-TYPE     93     72    118     75
D1119V6, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              3              118
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATP2C1 MUTATED        2      7      3      0      1      0
  ATP2C1 WILD-TYPE     50     57     69    104     39     59
D1119V7, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              7               57
  CLUS_3              3               69
  CLUS_4              0              104
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C1 MUTATED       12      0      1
  ATP2C1 WILD-TYPE    205     75     98
D1119V8, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1             12              205
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ATP2C1 MUTATED        4      0      5
  ATP2C1 WILD-TYPE    117    108     67
D1119V9, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              0              108
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATP2C1 MUTATED        2      0      3      0      4
  ATP2C1 WILD-TYPE     86     66     42     55     43
D1119V10, multiclass
        clus
vv       ATP2C1 MUTATED ATP2C1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1120) Variable = STK36 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK36 MUTATED        2      6      0      0
  STK36 WILD-TYPE    202    131     47      3
D1120V1, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             6             131
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK36 MUTATED        1      2      1      1      1
  STK36 WILD-TYPE     38     94     43     87     79
D1120V2, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             2              94
  CLUS_3             1              43
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK36 MUTATED        1      3      1      1      1
  STK36 WILD-TYPE     25     76     72     81     57
D1120V3, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             3              76
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK36 MUTATED        2      3      1      1
  STK36 WILD-TYPE    125     48     70     68
D1120V4, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             3              48
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK36 MUTATED        1      2      5      0      0
  STK36 WILD-TYPE     83     83     80     69     47
D1120V5, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STK36 MUTATED        1      1      2      4
  STK36 WILD-TYPE     94     73    119     76
D1120V6, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  STK36 MUTATED        2      4      0      1      0      1
  STK36 WILD-TYPE     50     60     72    103     40     58
D1120V7, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             4              60
  CLUS_3             0              72
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK36 MUTATED        6      0      2
  STK36 WILD-TYPE    211     75     97
D1120V8, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STK36 MUTATED        2      2      2
  STK36 WILD-TYPE    119    106     70
D1120V9, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  STK36 MUTATED        2      0      2      2      0
  STK36 WILD-TYPE     86     66     43     53     47
D1120V10, multiclass
        clus
vv       STK36 MUTATED STK36 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             2              53
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1121) Variable = ISM1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ISM1 MUTATED        3     10      0      0
  ISM1 WILD-TYPE    201    127     47      3
D1121V1, multiclass
        clus
vv       ISM1 MUTATED ISM1 WILD-TYPE
  CLUS_1            3            201
  CLUS_2           10            127
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ISM1 MUTATED        0      7      1      3      0
  ISM1 WILD-TYPE     39     89     43     85     80
D1121V2, multiclass
        clus
vv       ISM1 MUTATED ISM1 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            7             89
  CLUS_3            1             43
  CLUS_4            3             85
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ISM1 MUTATED        1      4      3      1      1
  ISM1 WILD-TYPE     25     75     70     81     57
D1121V3, multiclass
        clus
vv       ISM1 MUTATED ISM1 WILD-TYPE
  CLUS_1            1             25
  CLUS_2            4             75
  CLUS_3            3             70
  CLUS_4            1             81
  CLUS_5            1             57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ISM1 MUTATED        2      4      3      1
  ISM1 WILD-TYPE    125     47     68     68
D1121V4, multiclass
        clus
vv       ISM1 MUTATED ISM1 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            4             47
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ISM1 MUTATED        2      1      6      1      2
  ISM1 WILD-TYPE     82     84     79     68     45
D1121V5, multiclass
        clus
vv       ISM1 MUTATED ISM1 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            1             84
  CLUS_3            6             79
  CLUS_4            1             68
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ISM1 MUTATED        4      1      2      5
  ISM1 WILD-TYPE     91     73    119     75
D1121V6, multiclass
        clus
vv       ISM1 MUTATED ISM1 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            1             73
  CLUS_3            2            119
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ISM1 MUTATED        2      5      1      2      0      2
  ISM1 WILD-TYPE     50     59     71    102     40     57
D1121V7, multiclass
        clus
vv       ISM1 MUTATED ISM1 WILD-TYPE
  CLUS_1            2             50
  CLUS_2            5             59
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ISM1 MUTATED        9      1      2
  ISM1 WILD-TYPE    208     74     97
D1121V8, multiclass
        clus
vv       ISM1 MUTATED ISM1 WILD-TYPE
  CLUS_1            9            208
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ISM1 MUTATED        6      1      3
  ISM1 WILD-TYPE    115    107     69
D1121V9, multiclass
        clus
vv       ISM1 MUTATED ISM1 WILD-TYPE
  CLUS_1            6            115
  CLUS_2            1            107
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ISM1 MUTATED        2      0      3      1      4
  ISM1 WILD-TYPE     86     66     42     54     43
D1121V10, multiclass
        clus
vv       ISM1 MUTATED ISM1 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            0             66
  CLUS_3            3             42
  CLUS_4            1             54
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1122) Variable = GLTPD1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTPD1 MUTATED        0      4      0      0
  GLTPD1 WILD-TYPE    204    133     47      3
D1122V1, multiclass
        clus
vv       GLTPD1 MUTATED GLTPD1 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              4              133
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLTPD1 MUTATED        0      3      0      0      1
  GLTPD1 WILD-TYPE     39     93     44     88     79
D1122V2, multiclass
        clus
vv       GLTPD1 MUTATED GLTPD1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLTPD1 MUTATED        1      1      1      0      1
  GLTPD1 WILD-TYPE     25     78     72     82     57
D1122V3, multiclass
        clus
vv       GLTPD1 MUTATED GLTPD1 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTPD1 MUTATED        1      2      1      0
  GLTPD1 WILD-TYPE    126     49     70     69
D1122V4, multiclass
        clus
vv       GLTPD1 MUTATED GLTPD1 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLTPD1 MUTATED        0      1      2      0      0
  GLTPD1 WILD-TYPE     84     84     83     69     47
D1122V5, multiclass
        clus
vv       GLTPD1 MUTATED GLTPD1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              2               83
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GLTPD1 MUTATED        0      1      1      1
  GLTPD1 WILD-TYPE     95     73    120     79
D1122V6, multiclass
        clus
vv       GLTPD1 MUTATED GLTPD1 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              1               73
  CLUS_3              1              120
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GLTPD1 MUTATED        0      2      1      1      0      0
  GLTPD1 WILD-TYPE     52     62     71    103     40     59
D1122V7, multiclass
        clus
vv       GLTPD1 MUTATED GLTPD1 WILD-TYPE
  CLUS_1              0               52
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLTPD1 MUTATED        3      1      0
  GLTPD1 WILD-TYPE    214     74     99
D1122V8, multiclass
        clus
vv       GLTPD1 MUTATED GLTPD1 WILD-TYPE
  CLUS_1              3              214
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GLTPD1 MUTATED        1      1      2
  GLTPD1 WILD-TYPE    120    107     70
D1122V9, multiclass
        clus
vv       GLTPD1 MUTATED GLTPD1 WILD-TYPE
  CLUS_1              1              120
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GLTPD1 MUTATED        0      1      2      0      1
  GLTPD1 WILD-TYPE     88     65     43     55     46
D1122V10, multiclass
        clus
vv       GLTPD1 MUTATED GLTPD1 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1123) Variable = CLDN5 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN5 MUTATED        0      2      1      0
  CLDN5 WILD-TYPE    204    135     46      3
D1123V1, multiclass
        clus
vv       CLDN5 MUTATED CLDN5 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             2             135
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLDN5 MUTATED        1      2      0      0      1
  CLDN5 WILD-TYPE     38     94     44     88     79
D1123V2, multiclass
        clus
vv       CLDN5 MUTATED CLDN5 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             2              94
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLDN5 MUTATED        0      0      1      0      1
  CLDN5 WILD-TYPE     26     79     72     82     57
D1123V3, multiclass
[1] "Remove cluster labels:" "CLDN5 MUTATED"         
clus
  CLDN5 MUTATED CLDN5 WILD-TYPE 
              2             316 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-4183      TCGA-BR-4184 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-7704      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8080      TCGA-BR-8081 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4465      TCGA-CG-4466 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6527 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8578 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6EV      TCGA-D7-A6EX 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A748 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7916 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-FP-7998      TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7133 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HF-A5NB      TCGA-HU-8602      TCGA-HU-8608 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4GF      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4HD 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RO 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-IN-A6RR      TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-IN-A7NU      TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-KB-A6F5      TCGA-KB-A93G      TCGA-MX-A5UG      TCGA-RD-A7BS 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-RD-A7BT      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-SW-A7EA 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-AA64 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN5 MUTATED        2      0      0      0
  CLDN5 WILD-TYPE    125     51     71     69
D1123V4, multiclass
[1] "Remove cluster labels:" "CLDN5 MUTATED"         
clus
  CLDN5 MUTATED CLDN5 WILD-TYPE 
              2             316 
     TCGA-B7-5816      TCGA-B7-5818      TCGA-B7-A5TI      TCGA-B7-A5TJ 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-B7-A5TK      TCGA-B7-A5TN      TCGA-BR-4183      TCGA-BR-4184 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-4187      TCGA-BR-4188      TCGA-BR-4191      TCGA-BR-4201 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-4253      TCGA-BR-4255      TCGA-BR-4256      TCGA-BR-4257 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-4267      TCGA-BR-4279      TCGA-BR-4280      TCGA-BR-4292 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-4294      TCGA-BR-4357      TCGA-BR-4361      TCGA-BR-4362 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-4363      TCGA-BR-4366      TCGA-BR-4368      TCGA-BR-4369 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-4370      TCGA-BR-4371      TCGA-BR-6452      TCGA-BR-6453 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-6454      TCGA-BR-6455      TCGA-BR-6456      TCGA-BR-6457 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-6458      TCGA-BR-6564      TCGA-BR-6565      TCGA-BR-6566 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-6705      TCGA-BR-6706      TCGA-BR-6707      TCGA-BR-6709 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-6710      TCGA-BR-6801      TCGA-BR-6802      TCGA-BR-6803 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-6852      TCGA-BR-7196      TCGA-BR-7197      TCGA-BR-7703 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-7704      TCGA-BR-7715      TCGA-BR-7716      TCGA-BR-7717 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-7722      TCGA-BR-7723      TCGA-BR-7851      TCGA-BR-7901 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-7957      TCGA-BR-7958      TCGA-BR-7959      TCGA-BR-8058 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8059      TCGA-BR-8060      TCGA-BR-8080      TCGA-BR-8081 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8284      TCGA-BR-8285      TCGA-BR-8286      TCGA-BR-8289 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8291      TCGA-BR-8295      TCGA-BR-8297      TCGA-BR-8360 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8361      TCGA-BR-8363      TCGA-BR-8364      TCGA-BR-8365 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8366      TCGA-BR-8367      TCGA-BR-8368      TCGA-BR-8369 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8370      TCGA-BR-8371      TCGA-BR-8372      TCGA-BR-8380 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8381      TCGA-BR-8382      TCGA-BR-8384      TCGA-BR-8483 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8484      TCGA-BR-8485      TCGA-BR-8486      TCGA-BR-8588 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8589      TCGA-BR-8590      TCGA-BR-8591      TCGA-BR-8592 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8676      TCGA-BR-8677      TCGA-BR-8678      TCGA-BR-8679 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8680      TCGA-BR-8682      TCGA-BR-8683      TCGA-BR-8686 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-8687      TCGA-BR-8690      TCGA-BR-A44T      TCGA-BR-A44U 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-A452      TCGA-BR-A453      TCGA-BR-A4CQ      TCGA-BR-A4CR 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-A4CS      TCGA-BR-A4IU      TCGA-BR-A4IV      TCGA-BR-A4IY 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-A4IZ      TCGA-BR-A4J1      TCGA-BR-A4J2      TCGA-BR-A4J4 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-A4J5      TCGA-BR-A4J6      TCGA-BR-A4J7      TCGA-BR-A4J8 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-A4PD      TCGA-BR-A4PE      TCGA-BR-A4PF      TCGA-BR-A4QI 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-BR-A4QL      TCGA-BR-A4QM      TCGA-CD-5798      TCGA-CD-5799 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CD-5800      TCGA-CD-5801      TCGA-CD-5802      TCGA-CD-5803 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CD-5804      TCGA-CD-5813      TCGA-CD-8524      TCGA-CD-8525 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CD-8526      TCGA-CD-8527      TCGA-CD-8528      TCGA-CD-8529 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CD-8530      TCGA-CD-8531      TCGA-CD-8532      TCGA-CD-8533 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CD-8534      TCGA-CD-8535      TCGA-CD-8536      TCGA-CD-A486 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CD-A487      TCGA-CD-A489      TCGA-CD-A48A      TCGA-CD-A48C 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CD-A4MG      TCGA-CD-A4MH      TCGA-CD-A4MI      TCGA-CD-A4MJ 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-4300      TCGA-CG-4301      TCGA-CG-4304      TCGA-CG-4305 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-4306      TCGA-CG-4436      TCGA-CG-4437      TCGA-CG-4438 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-4442      TCGA-CG-4443      TCGA-CG-4444      TCGA-CG-4449 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-4455      TCGA-CG-4460      TCGA-CG-4465      TCGA-CG-4466 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-4469      TCGA-CG-4474      TCGA-CG-4475      TCGA-CG-4476 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-4477      TCGA-CG-5716      TCGA-CG-5717      TCGA-CG-5718 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-5719      TCGA-CG-5720      TCGA-CG-5721      TCGA-CG-5723 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-5724      TCGA-CG-5725      TCGA-CG-5726      TCGA-CG-5727 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-5728      TCGA-CG-5730      TCGA-CG-5732      TCGA-CG-5733 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-CG-5734      TCGA-D7-5577      TCGA-D7-5578      TCGA-D7-5579 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-6518      TCGA-D7-6519      TCGA-D7-6520      TCGA-D7-6521 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-6522      TCGA-D7-6524      TCGA-D7-6525      TCGA-D7-6527 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-6528      TCGA-D7-6815      TCGA-D7-6817      TCGA-D7-6818 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-6820      TCGA-D7-6822      TCGA-D7-8570      TCGA-D7-8572 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-8573      TCGA-D7-8574      TCGA-D7-8575      TCGA-D7-8578 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-A4YT      TCGA-D7-A4YU      TCGA-D7-A4YV      TCGA-D7-A4YX 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-A4YY      TCGA-D7-A4Z0      TCGA-D7-A6EV      TCGA-D7-A6EX 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-D7-A6EY      TCGA-D7-A6EZ      TCGA-D7-A6F0      TCGA-D7-A748 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-EQ-8122      TCGA-EQ-A4SO      TCGA-F1-6177      TCGA-F1-6874 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-F1-6875      TCGA-F1-A448      TCGA-F1-A72C      TCGA-FP-7916 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-FP-7998      TCGA-HF-7131      TCGA-HF-7132      TCGA-HF-7133 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-HF-7136      TCGA-HF-A5NB      TCGA-HU-8602      TCGA-HU-8608 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-HU-8610      TCGA-HU-A4GF      TCGA-HU-A4GQ      TCGA-HU-A4GT 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-HU-A4GU      TCGA-HU-A4GX      TCGA-HU-A4GY      TCGA-HU-A4H2 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-HU-A4H3      TCGA-HU-A4H4      TCGA-HU-A4H5      TCGA-HU-A4HD 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-IN-7806      TCGA-IN-7808      TCGA-IN-8462      TCGA-IN-8663 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-IN-A6RI      TCGA-IN-A6RL      TCGA-IN-A6RN      TCGA-IN-A6RO 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-IN-A6RR      TCGA-IN-A6RS      TCGA-IN-A7NR      TCGA-IN-A7NT 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-IN-A7NU      TCGA-IN-AB1V      TCGA-IN-AB1X      TCGA-IP-7968 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-KB-A6F5      TCGA-KB-A93G      TCGA-MX-A5UG      TCGA-RD-A7BS 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-RD-A7BT      TCGA-RD-A7BW      TCGA-RD-A7C1      TCGA-RD-A8MV 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-RD-A8MW      TCGA-RD-A8N0      TCGA-RD-A8N1      TCGA-SW-A7EA 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-SW-A7EB      TCGA-VQ-A8DL      TCGA-VQ-A8DT      TCGA-VQ-A8DU 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-VQ-A8E2      TCGA-VQ-A8E7      TCGA-VQ-A8P2      TCGA-VQ-A8P3 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-VQ-A8PE      TCGA-VQ-A8PK      TCGA-VQ-A8PM      TCGA-VQ-A8PQ 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-VQ-A91U      TCGA-VQ-A91V      TCGA-VQ-A92D      TCGA-VQ-AA64 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-VQ-AA69      TCGA-VQ-AA6A      TCGA-VQ-AA6B      TCGA-VQ-AA6F 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
     TCGA-VQ-AA6G      TCGA-VQ-AA6I      TCGA-VQ-AA6K      TCGA-ZA-A8F6 
"CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" "CLDN5 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLDN5 MUTATED        0      0      2      1      1
  CLDN5 WILD-TYPE     84     85     83     68     46
D1123V5, multiclass
        clus
vv       CLDN5 MUTATED CLDN5 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             2              83
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CLDN5 MUTATED        1      0      0      3
  CLDN5 WILD-TYPE     94     74    121     77
D1123V6, multiclass
        clus
vv       CLDN5 MUTATED CLDN5 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CLDN5 MUTATED        2      0      1      1      0      0
  CLDN5 WILD-TYPE     50     64     71    103     40     59
D1123V7, multiclass
        clus
vv       CLDN5 MUTATED CLDN5 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             0              64
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLDN5 MUTATED        4      0      0
  CLDN5 WILD-TYPE    213     75     99
D1123V8, multiclass
        clus
vv       CLDN5 MUTATED CLDN5 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  CLDN5 MUTATED        3      0      0
  CLDN5 WILD-TYPE    118    108     72
D1123V9, multiclass
        clus
vv       CLDN5 MUTATED CLDN5 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0             108
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CLDN5 MUTATED        1      0      0      0      2
  CLDN5 WILD-TYPE     87     66     45     55     45
D1123V10, multiclass
        clus
vv       CLDN5 MUTATED CLDN5 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1124) Variable = D4S234E MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  D4S234E MUTATED        1      6      0      0
  D4S234E WILD-TYPE    203    131     47      3
D1124V1, multiclass
        clus
vv       D4S234E MUTATED D4S234E WILD-TYPE
  CLUS_1               1               203
  CLUS_2               6               131
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  D4S234E MUTATED        0      3      2      0      0
  D4S234E WILD-TYPE     39     93     42     88     80
D1124V2, multiclass
        clus
vv       D4S234E MUTATED D4S234E WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               2                42
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  D4S234E MUTATED        0      1      0      2      3
  D4S234E WILD-TYPE     26     78     73     80     55
D1124V3, multiclass
        clus
vv       D4S234E MUTATED D4S234E WILD-TYPE
  CLUS_1               0                26
  CLUS_2               1                78
  CLUS_3               0                73
  CLUS_4               2                80
  CLUS_5               3                55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  D4S234E MUTATED        2      2      0      2
  D4S234E WILD-TYPE    125     49     71     67
D1124V4, multiclass
        clus
vv       D4S234E MUTATED D4S234E WILD-TYPE
  CLUS_1               2               125
  CLUS_2               2                49
  CLUS_3               0                71
  CLUS_4               2                67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  D4S234E MUTATED        0      3      2      1      0
  D4S234E WILD-TYPE     84     82     83     68     47
D1124V5, multiclass
        clus
vv       D4S234E MUTATED D4S234E WILD-TYPE
  CLUS_1               0                84
  CLUS_2               3                82
  CLUS_3               2                83
  CLUS_4               1                68
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  D4S234E MUTATED        2      3      1      0
  D4S234E WILD-TYPE     93     71    120     80
D1124V6, multiclass
        clus
vv       D4S234E MUTATED D4S234E WILD-TYPE
  CLUS_1               2                93
  CLUS_2               3                71
  CLUS_3               1               120
  CLUS_4               0                80
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  D4S234E MUTATED        1      3      1      1      1      0
  D4S234E WILD-TYPE     51     61     71    103     39     59
D1124V7, multiclass
        clus
vv       D4S234E MUTATED D4S234E WILD-TYPE
  CLUS_1               1                51
  CLUS_2               3                61
  CLUS_3               1                71
  CLUS_4               1               103
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  D4S234E MUTATED        5      1      1
  D4S234E WILD-TYPE    212     74     98
D1124V8, multiclass
        clus
vv       D4S234E MUTATED D4S234E WILD-TYPE
  CLUS_1               5               212
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  D4S234E MUTATED        1      2      1
  D4S234E WILD-TYPE    120    106     71
D1124V9, multiclass
        clus
vv       D4S234E MUTATED D4S234E WILD-TYPE
  CLUS_1               1               120
  CLUS_2               2               106
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  D4S234E MUTATED        3      1      0      0      0
  D4S234E WILD-TYPE     85     65     45     55     47
D1124V10, multiclass
        clus
vv       D4S234E MUTATED D4S234E WILD-TYPE
  CLUS_1               3                85
  CLUS_2               1                65
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               0                47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1125) Variable = EGLN1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGLN1 MUTATED        1      4      0      0
  EGLN1 WILD-TYPE    203    133     47      3
D1125V1, multiclass
        clus
vv       EGLN1 MUTATED EGLN1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             4             133
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGLN1 MUTATED        0      4      0      0      0
  EGLN1 WILD-TYPE     39     92     44     88     80
D1125V2, multiclass
        clus
vv       EGLN1 MUTATED EGLN1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGLN1 MUTATED        0      0      2      2      0
  EGLN1 WILD-TYPE     26     79     71     80     58
D1125V3, multiclass
        clus
vv       EGLN1 MUTATED EGLN1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              79
  CLUS_3             2              71
  CLUS_4             2              80
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGLN1 MUTATED        0      1      1      2
  EGLN1 WILD-TYPE    127     50     70     67
D1125V4, multiclass
        clus
vv       EGLN1 MUTATED EGLN1 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             1              50
  CLUS_3             1              70
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGLN1 MUTATED        0      3      2      0      0
  EGLN1 WILD-TYPE     84     82     83     69     47
D1125V5, multiclass
        clus
vv       EGLN1 MUTATED EGLN1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             2              83
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGLN1 MUTATED        1      3      0      1
  EGLN1 WILD-TYPE     94     71    121     79
D1125V6, multiclass
        clus
vv       EGLN1 MUTATED EGLN1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             3              71
  CLUS_3             0             121
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EGLN1 MUTATED        1      2      0      1      1      0
  EGLN1 WILD-TYPE     51     62     72    103     39     59
D1125V7, multiclass
        clus
vv       EGLN1 MUTATED EGLN1 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             2              62
  CLUS_3             0              72
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EGLN1 MUTATED        3      0      2
  EGLN1 WILD-TYPE    214     75     97
D1125V8, multiclass
        clus
vv       EGLN1 MUTATED EGLN1 WILD-TYPE
  CLUS_1             3             214
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EGLN1 MUTATED        2      1      1
  EGLN1 WILD-TYPE    119    107     71
D1125V9, multiclass
        clus
vv       EGLN1 MUTATED EGLN1 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EGLN1 MUTATED        1      1      1      0      1
  EGLN1 WILD-TYPE     87     65     44     55     46
D1125V10, multiclass
        clus
vv       EGLN1 MUTATED EGLN1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1126) Variable = C1ORF131 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF131 MUTATED        0      5      0      0
  C1ORF131 WILD-TYPE    204    132     47      3
D1126V1, multiclass
        clus
vv       C1ORF131 MUTATED C1ORF131 WILD-TYPE
  CLUS_1                0                204
  CLUS_2                5                132
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF131 MUTATED        0      3      1      0      0
  C1ORF131 WILD-TYPE     39     93     43     88     80
D1126V2, multiclass
        clus
vv       C1ORF131 MUTATED C1ORF131 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                3                 93
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF131 MUTATED        0      0      0      0      1
  C1ORF131 WILD-TYPE     26     79     73     82     57
D1126V3, multiclass
[1] "Remove cluster labels:" "C1ORF131 MUTATED"      
clus
  C1ORF131 MUTATED C1ORF131 WILD-TYPE 
                 1                317 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-B7-A5TI 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-B7-A5TJ         TCGA-B7-A5TK         TCGA-B7-A5TN 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4183         TCGA-BR-4184         TCGA-BR-4187 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4188         TCGA-BR-4191         TCGA-BR-4201 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4253         TCGA-BR-4255         TCGA-BR-4256 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4257         TCGA-BR-4267         TCGA-BR-4279 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4280         TCGA-BR-4292         TCGA-BR-4294 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4357         TCGA-BR-4361         TCGA-BR-4363 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4366         TCGA-BR-4368         TCGA-BR-4369 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4370         TCGA-BR-4371         TCGA-BR-6452 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-6453         TCGA-BR-6454         TCGA-BR-6455 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-6456         TCGA-BR-6457         TCGA-BR-6458 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-7196         TCGA-BR-7197         TCGA-BR-7703 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-7704         TCGA-BR-7715         TCGA-BR-7716 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-7717         TCGA-BR-7722         TCGA-BR-7723 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-7851         TCGA-BR-7901         TCGA-BR-7957 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-7958         TCGA-BR-7959         TCGA-BR-8058 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8059         TCGA-BR-8060         TCGA-BR-8080 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8081         TCGA-BR-8284         TCGA-BR-8285 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8286         TCGA-BR-8289         TCGA-BR-8291 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8295         TCGA-BR-8297         TCGA-BR-8360 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8361         TCGA-BR-8363         TCGA-BR-8364 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8365         TCGA-BR-8366         TCGA-BR-8367 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8368         TCGA-BR-8369         TCGA-BR-8370 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8371         TCGA-BR-8372         TCGA-BR-8380 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8381         TCGA-BR-8382         TCGA-BR-8384 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8483         TCGA-BR-8484         TCGA-BR-8485 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8486         TCGA-BR-8588         TCGA-BR-8589 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8590         TCGA-BR-8591         TCGA-BR-8592 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8676         TCGA-BR-8677         TCGA-BR-8678 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8679         TCGA-BR-8680         TCGA-BR-8682 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8683         TCGA-BR-8686         TCGA-BR-8687 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8690         TCGA-BR-A44T         TCGA-BR-A44U 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A452         TCGA-BR-A453         TCGA-BR-A4CQ 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A4CR         TCGA-BR-A4CS         TCGA-BR-A4IU 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A4IV         TCGA-BR-A4IY         TCGA-BR-A4IZ 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A4J1         TCGA-BR-A4J2         TCGA-BR-A4J4 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A4J5         TCGA-BR-A4J6         TCGA-BR-A4J7 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A4J8         TCGA-BR-A4PD         TCGA-BR-A4PE 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A4PF         TCGA-BR-A4QI         TCGA-BR-A4QL 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A4QM         TCGA-CD-5798         TCGA-CD-5799 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-5800         TCGA-CD-5801         TCGA-CD-5802 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-5803         TCGA-CD-5804         TCGA-CD-5813 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-8524         TCGA-CD-8525         TCGA-CD-8526 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-8527         TCGA-CD-8528         TCGA-CD-8529 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-8530         TCGA-CD-8531         TCGA-CD-8532 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-8533         TCGA-CD-8534         TCGA-CD-8535 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-8536         TCGA-CD-A486         TCGA-CD-A487 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-A489         TCGA-CD-A48A         TCGA-CD-A48C 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-A4MG         TCGA-CD-A4MH         TCGA-CD-A4MI 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-A4MJ         TCGA-CG-4300         TCGA-CG-4301 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-4442         TCGA-CG-4443         TCGA-CG-4444 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-4449         TCGA-CG-4455         TCGA-CG-4460 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-4465         TCGA-CG-4466         TCGA-CG-4469 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4475         TCGA-CG-4476 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-4477         TCGA-CG-5716         TCGA-CG-5717 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-5718         TCGA-CG-5719         TCGA-CG-5720 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-5721         TCGA-CG-5723         TCGA-CG-5724 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-5725         TCGA-CG-5726         TCGA-CG-5727 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-5728         TCGA-CG-5730         TCGA-CG-5732 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-5733         TCGA-CG-5734         TCGA-D7-5577 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-5578         TCGA-D7-5579         TCGA-D7-6518 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-6519         TCGA-D7-6520         TCGA-D7-6521 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-6522         TCGA-D7-6524         TCGA-D7-6525 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-6822         TCGA-D7-8570         TCGA-D7-8572 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-8573         TCGA-D7-8574         TCGA-D7-8575 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-8578         TCGA-D7-A4YT         TCGA-D7-A4YU 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-A4YV         TCGA-D7-A4YX         TCGA-D7-A4YY 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-A4Z0         TCGA-D7-A6EV         TCGA-D7-A6EX 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-A6EY         TCGA-D7-A6EZ         TCGA-D7-A6F0 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-A748         TCGA-EQ-8122         TCGA-EQ-A4SO 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-F1-6177         TCGA-F1-6874         TCGA-F1-6875 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-F1-A448         TCGA-F1-A72C         TCGA-FP-7916 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-FP-7998         TCGA-HF-7131         TCGA-HF-7132 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-HF-7133         TCGA-HF-7134         TCGA-HF-7136 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-HF-A5NB         TCGA-HJ-7597         TCGA-HU-8602 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-HU-8608         TCGA-HU-8610         TCGA-HU-A4GF 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-HU-A4GQ         TCGA-HU-A4GT         TCGA-HU-A4GU 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-HU-A4GX         TCGA-HU-A4GY         TCGA-HU-A4H2 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-HU-A4H3         TCGA-HU-A4H4         TCGA-HU-A4H5 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-HU-A4HD         TCGA-IN-7806         TCGA-IN-7808 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-IN-8462         TCGA-IN-8663         TCGA-IN-A6RI 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-IN-A6RL         TCGA-IN-A6RN         TCGA-IN-A6RO 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-IN-A6RR         TCGA-IN-A6RS         TCGA-IN-A7NR 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-IN-A7NT         TCGA-IN-A7NU         TCGA-IN-AB1V 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-IN-AB1X         TCGA-IP-7968         TCGA-KB-A6F5 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-KB-A93G         TCGA-MX-A5UG         TCGA-RD-A7BS 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-RD-A7BT         TCGA-RD-A7BW         TCGA-RD-A7C1 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-RD-A8MV         TCGA-RD-A8MW         TCGA-RD-A8N0 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-RD-A8N1         TCGA-SW-A7EA         TCGA-SW-A7EB 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-A8DL         TCGA-VQ-A8DT         TCGA-VQ-A8DU 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-A8E2         TCGA-VQ-A8E7         TCGA-VQ-A8P2 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-A8P3         TCGA-VQ-A8PE         TCGA-VQ-A8PK 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-A8PM         TCGA-VQ-A8PQ         TCGA-VQ-A91U 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-A91V         TCGA-VQ-A92D         TCGA-VQ-AA64 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-AA69         TCGA-VQ-AA6A         TCGA-VQ-AA6B 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-AA6F         TCGA-VQ-AA6G         TCGA-VQ-AA6I 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-AA6K         TCGA-ZA-A8F6 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF131 MUTATED        0      1      0      0
  C1ORF131 WILD-TYPE    127     50     71     69
D1126V4, multiclass
[1] "Remove cluster labels:" "C1ORF131 MUTATED"      
clus
  C1ORF131 MUTATED C1ORF131 WILD-TYPE 
                 1                317 
        TCGA-B7-5816         TCGA-B7-5818         TCGA-B7-A5TI 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-B7-A5TJ         TCGA-B7-A5TK         TCGA-B7-A5TN 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4183         TCGA-BR-4184         TCGA-BR-4187 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4188         TCGA-BR-4191         TCGA-BR-4201 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4253         TCGA-BR-4255         TCGA-BR-4256 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4257         TCGA-BR-4267         TCGA-BR-4279 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4280         TCGA-BR-4292         TCGA-BR-4294 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4357         TCGA-BR-4361         TCGA-BR-4363 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4366         TCGA-BR-4368         TCGA-BR-4369 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-4370         TCGA-BR-4371         TCGA-BR-6452 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-6453         TCGA-BR-6454         TCGA-BR-6455 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-6456         TCGA-BR-6457         TCGA-BR-6458 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-6564         TCGA-BR-6565         TCGA-BR-6566 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-6705         TCGA-BR-6706         TCGA-BR-6707 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-6709         TCGA-BR-6710         TCGA-BR-6801 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-6802         TCGA-BR-6803         TCGA-BR-6852 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-7196         TCGA-BR-7197         TCGA-BR-7703 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-7704         TCGA-BR-7715         TCGA-BR-7716 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-7717         TCGA-BR-7722         TCGA-BR-7723 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-7851         TCGA-BR-7901         TCGA-BR-7957 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-7958         TCGA-BR-7959         TCGA-BR-8058 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8059         TCGA-BR-8060         TCGA-BR-8080 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8081         TCGA-BR-8284         TCGA-BR-8285 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8286         TCGA-BR-8289         TCGA-BR-8291 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8295         TCGA-BR-8297         TCGA-BR-8360 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8361         TCGA-BR-8363         TCGA-BR-8364 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8365         TCGA-BR-8366         TCGA-BR-8367 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8368         TCGA-BR-8369         TCGA-BR-8370 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8371         TCGA-BR-8372         TCGA-BR-8380 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8381         TCGA-BR-8382         TCGA-BR-8384 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8483         TCGA-BR-8484         TCGA-BR-8485 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8486         TCGA-BR-8588         TCGA-BR-8589 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8590         TCGA-BR-8591         TCGA-BR-8592 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8676         TCGA-BR-8677         TCGA-BR-8678 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8679         TCGA-BR-8680         TCGA-BR-8682 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8683         TCGA-BR-8686         TCGA-BR-8687 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-8690         TCGA-BR-A44T         TCGA-BR-A44U 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A452         TCGA-BR-A453         TCGA-BR-A4CQ 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A4CR         TCGA-BR-A4CS         TCGA-BR-A4IU 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A4IV         TCGA-BR-A4IY         TCGA-BR-A4IZ 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A4J1         TCGA-BR-A4J2         TCGA-BR-A4J4 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A4J5         TCGA-BR-A4J6         TCGA-BR-A4J7 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A4J8         TCGA-BR-A4PD         TCGA-BR-A4PE 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A4PF         TCGA-BR-A4QI         TCGA-BR-A4QL 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-BR-A4QM         TCGA-CD-5798         TCGA-CD-5799 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-5800         TCGA-CD-5801         TCGA-CD-5802 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-5803         TCGA-CD-5804         TCGA-CD-5813 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-8524         TCGA-CD-8525         TCGA-CD-8526 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-8527         TCGA-CD-8528         TCGA-CD-8529 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-8530         TCGA-CD-8531         TCGA-CD-8532 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-8533         TCGA-CD-8534         TCGA-CD-8535 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-8536         TCGA-CD-A486         TCGA-CD-A487 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-A489         TCGA-CD-A48A         TCGA-CD-A48C 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-A4MG         TCGA-CD-A4MH         TCGA-CD-A4MI 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CD-A4MJ         TCGA-CG-4300         TCGA-CG-4301 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-4304         TCGA-CG-4305         TCGA-CG-4306 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-4436         TCGA-CG-4437         TCGA-CG-4438 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-4442         TCGA-CG-4443         TCGA-CG-4444 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-4449         TCGA-CG-4455         TCGA-CG-4460 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-4465         TCGA-CG-4466         TCGA-CG-4469 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-4474         TCGA-CG-4475         TCGA-CG-4476 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-4477         TCGA-CG-5716         TCGA-CG-5717 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-5718         TCGA-CG-5719         TCGA-CG-5720 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-5721         TCGA-CG-5723         TCGA-CG-5724 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-5725         TCGA-CG-5726         TCGA-CG-5727 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-5728         TCGA-CG-5730         TCGA-CG-5732 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-CG-5733         TCGA-CG-5734         TCGA-D7-5577 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-5578         TCGA-D7-5579         TCGA-D7-6518 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-6519         TCGA-D7-6520         TCGA-D7-6521 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-6522         TCGA-D7-6524         TCGA-D7-6525 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-6527         TCGA-D7-6528         TCGA-D7-6815 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-6817         TCGA-D7-6818         TCGA-D7-6820 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-6822         TCGA-D7-8570         TCGA-D7-8572 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-8573         TCGA-D7-8574         TCGA-D7-8575 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-8578         TCGA-D7-A4YT         TCGA-D7-A4YU 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-A4YV         TCGA-D7-A4YX         TCGA-D7-A4YY 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-A4Z0         TCGA-D7-A6EV         TCGA-D7-A6EX 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-A6EY         TCGA-D7-A6EZ         TCGA-D7-A6F0 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-D7-A748         TCGA-EQ-8122         TCGA-EQ-A4SO 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-F1-6177         TCGA-F1-6874         TCGA-F1-6875 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-F1-A448         TCGA-F1-A72C         TCGA-FP-7916 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-FP-7998         TCGA-HF-7131         TCGA-HF-7132 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-HF-7133         TCGA-HF-7134         TCGA-HF-7136 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-HF-A5NB         TCGA-HJ-7597         TCGA-HU-8602 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-HU-8608         TCGA-HU-8610         TCGA-HU-A4GF 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-HU-A4GQ         TCGA-HU-A4GT         TCGA-HU-A4GU 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-HU-A4GX         TCGA-HU-A4GY         TCGA-HU-A4H2 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-HU-A4H3         TCGA-HU-A4H4         TCGA-HU-A4H5 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-HU-A4HD         TCGA-IN-7806         TCGA-IN-7808 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-IN-8462         TCGA-IN-8663         TCGA-IN-A6RI 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-IN-A6RL         TCGA-IN-A6RN         TCGA-IN-A6RO 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-IN-A6RR         TCGA-IN-A6RS         TCGA-IN-A7NR 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-IN-A7NT         TCGA-IN-A7NU         TCGA-IN-AB1V 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-IN-AB1X         TCGA-IP-7968         TCGA-KB-A6F5 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-KB-A93G         TCGA-MX-A5UG         TCGA-RD-A7BS 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-RD-A7BT         TCGA-RD-A7BW         TCGA-RD-A7C1 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-RD-A8MV         TCGA-RD-A8MW         TCGA-RD-A8N0 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-RD-A8N1         TCGA-SW-A7EA         TCGA-SW-A7EB 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-A8DL         TCGA-VQ-A8DT         TCGA-VQ-A8DU 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-A8E2         TCGA-VQ-A8E7         TCGA-VQ-A8P2 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-A8P3         TCGA-VQ-A8PE         TCGA-VQ-A8PK 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-A8PM         TCGA-VQ-A8PQ         TCGA-VQ-A91U 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-A91V         TCGA-VQ-A92D         TCGA-VQ-AA64 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-AA69         TCGA-VQ-AA6A         TCGA-VQ-AA6B 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-AA6F         TCGA-VQ-AA6G         TCGA-VQ-AA6I 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
        TCGA-VQ-AA6K         TCGA-ZA-A8F6 
"C1ORF131 WILD-TYPE" "C1ORF131 WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF131 MUTATED        0      1      3      1      0
  C1ORF131 WILD-TYPE     84     84     82     68     47
D1126V5, multiclass
        clus
vv       C1ORF131 MUTATED C1ORF131 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                3                 82
  CLUS_4                1                 68
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  C1ORF131 MUTATED        2      0      0      3
  C1ORF131 WILD-TYPE     93     74    121     77
D1126V6, multiclass
        clus
vv       C1ORF131 MUTATED C1ORF131 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                0                 74
  CLUS_3                0                121
  CLUS_4                3                 77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  C1ORF131 MUTATED        2      2      0      0      1      0
  C1ORF131 WILD-TYPE     50     62     72    104     39     59
D1126V7, multiclass
        clus
vv       C1ORF131 MUTATED C1ORF131 WILD-TYPE
  CLUS_1                2                 50
  CLUS_2                2                 62
  CLUS_3                0                 72
  CLUS_4                0                104
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C1ORF131 MUTATED        4      0      1
  C1ORF131 WILD-TYPE    213     75     98
D1126V8, multiclass
        clus
vv       C1ORF131 MUTATED C1ORF131 WILD-TYPE
  CLUS_1                4                213
  CLUS_2                0                 75
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  C1ORF131 MUTATED        3      1      0
  C1ORF131 WILD-TYPE    118    107     72
D1126V9, multiclass
        clus
vv       C1ORF131 MUTATED C1ORF131 WILD-TYPE
  CLUS_1                3                118
  CLUS_2                1                107
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  C1ORF131 MUTATED        2      0      0      0      2
  C1ORF131 WILD-TYPE     86     66     45     55     45
D1126V10, multiclass
        clus
vv       C1ORF131 MUTATED C1ORF131 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                0                 66
  CLUS_3                0                 45
  CLUS_4                0                 55
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1127) Variable = CSF1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSF1 MUTATED        0      4      1      0
  CSF1 WILD-TYPE    204    133     46      3
D1127V1, multiclass
        clus
vv       CSF1 MUTATED CSF1 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            4            133
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSF1 MUTATED        1      3      0      0      0
  CSF1 WILD-TYPE     38     93     44     88     80
D1127V2, multiclass
        clus
vv       CSF1 MUTATED CSF1 WILD-TYPE
  CLUS_1            1             38
  CLUS_2            3             93
  CLUS_3            0             44
  CLUS_4            0             88
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSF1 MUTATED        0      0      2      0      2
  CSF1 WILD-TYPE     26     79     71     82     56
D1127V3, multiclass
        clus
vv       CSF1 MUTATED CSF1 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             79
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSF1 MUTATED        3      1      0      0
  CSF1 WILD-TYPE    124     50     71     69
D1127V4, multiclass
        clus
vv       CSF1 MUTATED CSF1 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            1             50
  CLUS_3            0             71
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSF1 MUTATED        0      1      3      1      0
  CSF1 WILD-TYPE     84     84     82     68     47
D1127V5, multiclass
        clus
vv       CSF1 MUTATED CSF1 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            3             82
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CSF1 MUTATED        1      1      0      3
  CSF1 WILD-TYPE     94     73    121     77
D1127V6, multiclass
        clus
vv       CSF1 MUTATED CSF1 WILD-TYPE
  CLUS_1            1             94
  CLUS_2            1             73
  CLUS_3            0            121
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CSF1 MUTATED        1      1      1      2      0      0
  CSF1 WILD-TYPE     51     63     71    102     40     59
D1127V7, multiclass
        clus
vv       CSF1 MUTATED CSF1 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            1             63
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CSF1 MUTATED        3      1      1
  CSF1 WILD-TYPE    214     74     98
D1127V8, multiclass
        clus
vv       CSF1 MUTATED CSF1 WILD-TYPE
  CLUS_1            3            214
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CSF1 MUTATED        2      1      0
  CSF1 WILD-TYPE    119    107     72
D1127V9, multiclass
        clus
vv       CSF1 MUTATED CSF1 WILD-TYPE
  CLUS_1            2            119
  CLUS_2            1            107
  CLUS_3            0             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CSF1 MUTATED        1      1      0      0      1
  CSF1 WILD-TYPE     87     65     45     55     46
D1127V10, multiclass
        clus
vv       CSF1 MUTATED CSF1 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            1             65
  CLUS_3            0             45
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1128) Variable = TBC1D5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D5 MUTATED        0      8      1      0
  TBC1D5 WILD-TYPE    204    129     46      3
D1128V1, multiclass
        clus
vv       TBC1D5 MUTATED TBC1D5 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              8              129
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D5 MUTATED        0      2      2      0      2
  TBC1D5 WILD-TYPE     39     94     42     88     78
D1128V2, multiclass
        clus
vv       TBC1D5 MUTATED TBC1D5 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              2               94
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D5 MUTATED        0      5      1      1      2
  TBC1D5 WILD-TYPE     26     74     72     81     56
D1128V3, multiclass
        clus
vv       TBC1D5 MUTATED TBC1D5 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              5               74
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D5 MUTATED        1      3      4      1
  TBC1D5 WILD-TYPE    126     48     67     68
D1128V4, multiclass
        clus
vv       TBC1D5 MUTATED TBC1D5 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              3               48
  CLUS_3              4               67
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D5 MUTATED        0      1      6      0      1
  TBC1D5 WILD-TYPE     84     84     79     69     46
D1128V5, multiclass
        clus
vv       TBC1D5 MUTATED TBC1D5 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              6               79
  CLUS_4              0               69
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TBC1D5 MUTATED        2      3      1      2
  TBC1D5 WILD-TYPE     93     71    120     78
D1128V6, multiclass
        clus
vv       TBC1D5 MUTATED TBC1D5 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              3               71
  CLUS_3              1              120
  CLUS_4              2               78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TBC1D5 MUTATED        1      6      0      2      0      0
  TBC1D5 WILD-TYPE     51     58     72    102     40     59
D1128V7, multiclass
        clus
vv       TBC1D5 MUTATED TBC1D5 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              6               58
  CLUS_3              0               72
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TBC1D5 MUTATED        6      3      0
  TBC1D5 WILD-TYPE    211     72     99
D1128V8, multiclass
        clus
vv       TBC1D5 MUTATED TBC1D5 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              3               72
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TBC1D5 MUTATED        0      2      4
  TBC1D5 WILD-TYPE    121    106     68
D1128V9, multiclass
        clus
vv       TBC1D5 MUTATED TBC1D5 WILD-TYPE
  CLUS_1              0              121
  CLUS_2              2              106
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TBC1D5 MUTATED        1      2      3      0      0
  TBC1D5 WILD-TYPE     87     64     42     55     47
D1128V10, multiclass
        clus
vv       TBC1D5 MUTATED TBC1D5 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              2               64
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1129) Variable = ZNF428 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF428 MUTATED        0      4      0      0
  ZNF428 WILD-TYPE    204    133     47      3
D1129V1, multiclass
        clus
vv       ZNF428 MUTATED ZNF428 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              4              133
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF428 MUTATED        0      5      0      0      0
  ZNF428 WILD-TYPE     39     91     44     88     80
D1129V2, multiclass
        clus
vv       ZNF428 MUTATED ZNF428 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF428 MUTATED        0      2      1      0      0
  ZNF428 WILD-TYPE     26     77     72     82     58
D1129V3, multiclass
        clus
vv       ZNF428 MUTATED ZNF428 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF428 MUTATED        0      2      1      0
  ZNF428 WILD-TYPE    127     49     70     69
D1129V4, multiclass
        clus
vv       ZNF428 MUTATED ZNF428 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF428 MUTATED        0      0      3      0      0
  ZNF428 WILD-TYPE     84     85     82     69     47
D1129V5, multiclass
        clus
vv       ZNF428 MUTATED ZNF428 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              3               82
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF428 MUTATED        0      0      0      3
  ZNF428 WILD-TYPE     95     74    121     77
D1129V6, multiclass
        clus
vv       ZNF428 MUTATED ZNF428 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              0               74
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF428 MUTATED        3      1      1      0      0      0
  ZNF428 WILD-TYPE     49     63     71    104     40     59
D1129V7, multiclass
        clus
vv       ZNF428 MUTATED ZNF428 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              1               63
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF428 MUTATED        5      0      0
  ZNF428 WILD-TYPE    212     75     99
D1129V8, multiclass
        clus
vv       ZNF428 MUTATED ZNF428 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF428 MUTATED        3      0      2
  ZNF428 WILD-TYPE    118    108     70
D1129V9, multiclass
        clus
vv       ZNF428 MUTATED ZNF428 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF428 MUTATED        0      0      1      0      4
  ZNF428 WILD-TYPE     88     66     44     55     43
D1129V10, multiclass
        clus
vv       ZNF428 MUTATED ZNF428 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1130) Variable = SLC38A1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A1 MUTATED        1      6      0      0
  SLC38A1 WILD-TYPE    203    131     47      3
D1130V1, multiclass
        clus
vv       SLC38A1 MUTATED SLC38A1 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               6               131
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC38A1 MUTATED        0      3      1      0      0
  SLC38A1 WILD-TYPE     39     93     43     88     80
D1130V2, multiclass
        clus
vv       SLC38A1 MUTATED SLC38A1 WILD-TYPE
  CLUS_1               0                39
  CLUS_2               3                93
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC38A1 MUTATED        0      5      2      0      0
  SLC38A1 WILD-TYPE     26     74     71     82     58
D1130V3, multiclass
        clus
vv       SLC38A1 MUTATED SLC38A1 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               5                74
  CLUS_3               2                71
  CLUS_4               0                82
  CLUS_5               0                58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A1 MUTATED        0      4      3      0
  SLC38A1 WILD-TYPE    127     47     68     69
D1130V4, multiclass
        clus
vv       SLC38A1 MUTATED SLC38A1 WILD-TYPE
  CLUS_1               0               127
  CLUS_2               4                47
  CLUS_3               3                68
  CLUS_4               0                69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC38A1 MUTATED        0      0      4      0      1
  SLC38A1 WILD-TYPE     84     85     81     69     46
D1130V5, multiclass
        clus
vv       SLC38A1 MUTATED SLC38A1 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               0                85
  CLUS_3               4                81
  CLUS_4               0                69
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC38A1 MUTATED        1      1      0      3
  SLC38A1 WILD-TYPE     94     73    121     77
D1130V6, multiclass
        clus
vv       SLC38A1 MUTATED SLC38A1 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               0               121
  CLUS_4               3                77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC38A1 MUTATED        3      4      0      0      0      0
  SLC38A1 WILD-TYPE     49     60     72    104     40     59
D1130V7, multiclass
        clus
vv       SLC38A1 MUTATED SLC38A1 WILD-TYPE
  CLUS_1               3                49
  CLUS_2               4                60
  CLUS_3               0                72
  CLUS_4               0               104
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC38A1 MUTATED        5      0      2
  SLC38A1 WILD-TYPE    212     75     97
D1130V8, multiclass
        clus
vv       SLC38A1 MUTATED SLC38A1 WILD-TYPE
  CLUS_1               5               212
  CLUS_2               0                75
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC38A1 MUTATED        2      0      1
  SLC38A1 WILD-TYPE    119    108     71
D1130V9, multiclass
        clus
vv       SLC38A1 MUTATED SLC38A1 WILD-TYPE
  CLUS_1               2               119
  CLUS_2               0               108
  CLUS_3               1                71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC38A1 MUTATED        0      0      1      0      2
  SLC38A1 WILD-TYPE     88     66     44     55     45
D1130V10, multiclass
        clus
vv       SLC38A1 MUTATED SLC38A1 WILD-TYPE
  CLUS_1               0                88
  CLUS_2               0                66
  CLUS_3               1                44
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1131) Variable = ZNF570 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF570 MUTATED        4      8      0      0
  ZNF570 WILD-TYPE    200    129     47      3
D1131V1, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              4              200
  CLUS_2              8              129
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF570 MUTATED        1      4      2      1      2
  ZNF570 WILD-TYPE     38     92     42     87     78
D1131V2, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               92
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF570 MUTATED        0      4      3      1      2
  ZNF570 WILD-TYPE     26     75     70     81     56
D1131V3, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF570 MUTATED        3      3      2      2
  ZNF570 WILD-TYPE    124     48     69     67
D1131V4, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              3               48
  CLUS_3              2               69
  CLUS_4              2               67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF570 MUTATED        1      3      5      2      0
  ZNF570 WILD-TYPE     83     82     80     67     47
D1131V5, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               82
  CLUS_3              5               80
  CLUS_4              2               67
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF570 MUTATED        2      3      2      4
  ZNF570 WILD-TYPE     93     71    119     76
D1131V6, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              3               71
  CLUS_3              2              119
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ZNF570 MUTATED        3      5      0      1      2      1
  ZNF570 WILD-TYPE     49     59     72    103     38     58
D1131V7, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              5               59
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              2               38
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF570 MUTATED        9      2      1
  ZNF570 WILD-TYPE    208     73     98
D1131V8, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF570 MUTATED        4      1      2
  ZNF570 WILD-TYPE    117    107     70
D1131V9, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              4              117
  CLUS_2              1              107
  CLUS_3              2               70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF570 MUTATED        3      1      1      1      1
  ZNF570 WILD-TYPE     85     65     44     54     46
D1131V10, multiclass
        clus
vv       ZNF570 MUTATED ZNF570 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              1               54
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1132) Variable = GPR115 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR115 MUTATED        0      5      0      0
  GPR115 WILD-TYPE    204    132     47      3
D1132V1, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              5              132
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR115 MUTATED        0      3      0      0      0
  GPR115 WILD-TYPE     39     93     44     88     80
D1132V2, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR115 MUTATED        0      2      1      0      2
  GPR115 WILD-TYPE     26     77     72     82     56
D1132V3, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR115 MUTATED        1      3      1      0
  GPR115 WILD-TYPE    126     48     70     69
D1132V4, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              3               48
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR115 MUTATED        0      1      2      1      1
  GPR115 WILD-TYPE     84     84     83     68     46
D1132V5, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              2               83
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR115 MUTATED        1      0      0      4
  GPR115 WILD-TYPE     94     74    121     76
D1132V6, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              0               74
  CLUS_3              0              121
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GPR115 MUTATED        2      2      1      0      0      0
  GPR115 WILD-TYPE     50     62     71    104     40     59
D1132V7, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              2               50
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR115 MUTATED        5      0      0
  GPR115 WILD-TYPE    212     75     99
D1132V8, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GPR115 MUTATED        2      0      1
  GPR115 WILD-TYPE    119    108     71
D1132V9, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              0              108
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR115 MUTATED        2      0      0      0      1
  GPR115 WILD-TYPE     86     66     45     55     46
D1132V10, multiclass
        clus
vv       GPR115 MUTATED GPR115 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              0               45
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1133) Variable = SLC45A4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC45A4 MUTATED        3     15      0      0
  SLC45A4 WILD-TYPE    201    122     47      3
D1133V1, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               3               201
  CLUS_2              15               122
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC45A4 MUTATED        0     12      1      0      3
  SLC45A4 WILD-TYPE     39     84     43     88     77
D1133V2, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               0                39
  CLUS_2              12                84
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               3                77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC45A4 MUTATED        1      6      7      1      2
  SLC45A4 WILD-TYPE     25     73     66     81     56
D1133V3, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               1                25
  CLUS_2               6                73
  CLUS_3               7                66
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC45A4 MUTATED        3      8      5      1
  SLC45A4 WILD-TYPE    124     43     66     68
D1133V4, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               3               124
  CLUS_2               8                43
  CLUS_3               5                66
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC45A4 MUTATED        0      4     11      1      2
  SLC45A4 WILD-TYPE     84     81     74     68     45
D1133V5, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               4                81
  CLUS_3              11                74
  CLUS_4               1                68
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC45A4 MUTATED        4      3      3      8
  SLC45A4 WILD-TYPE     91     71    118     72
D1133V6, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               4                91
  CLUS_2               3                71
  CLUS_3               3               118
  CLUS_4               8                72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC45A4 MUTATED        6      5      3      4      0      1
  SLC45A4 WILD-TYPE     46     59     69    100     40     58
D1133V7, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               6                46
  CLUS_2               5                59
  CLUS_3               3                69
  CLUS_4               4               100
  CLUS_5               0                40
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC45A4 MUTATED       15      3      1
  SLC45A4 WILD-TYPE    202     72     98
D1133V8, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1              15               202
  CLUS_2               3                72
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC45A4 MUTATED        4      2      8
  SLC45A4 WILD-TYPE    117    106     64
D1133V9, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               4               117
  CLUS_2               2               106
  CLUS_3               8                64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC45A4 MUTATED        4      2      3      1      4
  SLC45A4 WILD-TYPE     84     64     42     54     43
D1133V10, multiclass
        clus
vv       SLC45A4 MUTATED SLC45A4 WILD-TYPE
  CLUS_1               4                84
  CLUS_2               2                64
  CLUS_3               3                42
  CLUS_4               1                54
  CLUS_5               4                43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1134) Variable = NKX2-3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKX2-3 MUTATED        2      6      0      0
  NKX2-3 WILD-TYPE    202    131     47      3
D1134V1, multiclass
        clus
vv       NKX2-3 MUTATED NKX2-3 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              6              131
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKX2-3 MUTATED        0      5      0      1      0
  NKX2-3 WILD-TYPE     39     91     44     87     80
D1134V2, multiclass
        clus
vv       NKX2-3 MUTATED NKX2-3 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKX2-3 MUTATED        0      2      2      1      2
  NKX2-3 WILD-TYPE     26     77     71     81     56
D1134V3, multiclass
        clus
vv       NKX2-3 MUTATED NKX2-3 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              2               71
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKX2-3 MUTATED        1      4      1      1
  NKX2-3 WILD-TYPE    126     47     70     68
D1134V4, multiclass
        clus
vv       NKX2-3 MUTATED NKX2-3 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              4               47
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKX2-3 MUTATED        1      2      1      1      3
  NKX2-3 WILD-TYPE     83     83     84     68     44
D1134V5, multiclass
        clus
vv       NKX2-3 MUTATED NKX2-3 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              2               83
  CLUS_3              1               84
  CLUS_4              1               68
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NKX2-3 MUTATED        1      2      1      4
  NKX2-3 WILD-TYPE     94     72    120     76
D1134V6, multiclass
        clus
vv       NKX2-3 MUTATED NKX2-3 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  NKX2-3 MUTATED        4      2      1      1      0      0
  NKX2-3 WILD-TYPE     48     62     71    103     40     59
D1134V7, multiclass
        clus
vv       NKX2-3 MUTATED NKX2-3 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NKX2-3 MUTATED        6      1      1
  NKX2-3 WILD-TYPE    211     74     98
D1134V8, multiclass
        clus
vv       NKX2-3 MUTATED NKX2-3 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              1               74
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NKX2-3 MUTATED        5      1      0
  NKX2-3 WILD-TYPE    116    107     72
D1134V9, multiclass
        clus
vv       NKX2-3 MUTATED NKX2-3 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              1              107
  CLUS_3              0               72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NKX2-3 MUTATED        0      1      0      0      5
  NKX2-3 WILD-TYPE     88     65     45     55     42
D1134V10, multiclass
        clus
vv       NKX2-3 MUTATED NKX2-3 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              1               65
  CLUS_3              0               45
  CLUS_4              0               55
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1135) Variable = EPHA3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA3 MUTATED       13     14      1      0
  EPHA3 WILD-TYPE    191    123     46      3
D1135V1, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1            13             191
  CLUS_2            14             123
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA3 MUTATED        2     11      4      6      1
  EPHA3 WILD-TYPE     37     85     40     82     79
D1135V2, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             2              37
  CLUS_2            11              85
  CLUS_3             4              40
  CLUS_4             6              82
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA3 MUTATED        1     14      6      1      4
  EPHA3 WILD-TYPE     25     65     67     81     54
D1135V3, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2            14              65
  CLUS_3             6              67
  CLUS_4             1              81
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA3 MUTATED        6      7     11      2
  EPHA3 WILD-TYPE    121     44     60     67
D1135V4, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             6             121
  CLUS_2             7              44
  CLUS_3            11              60
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA3 MUTATED        6      1     12      3      4
  EPHA3 WILD-TYPE     78     84     73     66     43
D1135V5, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             6              78
  CLUS_2             1              84
  CLUS_3            12              73
  CLUS_4             3              66
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA3 MUTATED        8      1      8      9
  EPHA3 WILD-TYPE     87     73    113     71
D1135V6, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             8              87
  CLUS_2             1              73
  CLUS_3             8             113
  CLUS_4             9              71
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHA3 MUTATED        7      6      3      5      3      4
  EPHA3 WILD-TYPE     45     58     69     99     37     55
D1135V7, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             7              45
  CLUS_2             6              58
  CLUS_3             3              69
  CLUS_4             5              99
  CLUS_5             3              37
  CLUS_6             4              55
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA3 MUTATED       19      4      5
  EPHA3 WILD-TYPE    198     71     94
D1135V8, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1            19             198
  CLUS_2             4              71
  CLUS_3             5              94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EPHA3 MUTATED        9      2     10
  EPHA3 WILD-TYPE    112    106     62
D1135V9, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             9             112
  CLUS_2             2             106
  CLUS_3            10              62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA3 MUTATED        8      1      4      2      6
  EPHA3 WILD-TYPE     80     65     41     53     41
D1135V10, multiclass
        clus
vv       EPHA3 MUTATED EPHA3 WILD-TYPE
  CLUS_1             8              80
  CLUS_2             1              65
  CLUS_3             4              41
  CLUS_4             2              53
  CLUS_5             6              41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1136) Variable = GABRG3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRG3 MUTATED        0      7      2      0
  GABRG3 WILD-TYPE    204    130     45      3
D1136V1, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              7              130
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GABRG3 MUTATED        1      4      3      0      0
  GABRG3 WILD-TYPE     38     92     41     88     80
D1136V2, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               92
  CLUS_3              3               41
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GABRG3 MUTATED        0      2      1      1      3
  GABRG3 WILD-TYPE     26     77     72     81     55
D1136V3, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRG3 MUTATED        0      5      1      1
  GABRG3 WILD-TYPE    127     46     70     68
D1136V4, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              5               46
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GABRG3 MUTATED        0      2      6      0      0
  GABRG3 WILD-TYPE     84     83     79     69     47
D1136V5, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              6               79
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GABRG3 MUTATED        2      1      2      3
  GABRG3 WILD-TYPE     93     73    119     77
D1136V6, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  GABRG3 MUTATED        1      1      4      2      1      0
  GABRG3 WILD-TYPE     51     63     68    102     39     59
D1136V7, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              1               63
  CLUS_3              4               68
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABRG3 MUTATED        5      2      2
  GABRG3 WILD-TYPE    212     73     97
D1136V8, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              2               73
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GABRG3 MUTATED        2      3      3
  GABRG3 WILD-TYPE    119    105     69
D1136V9, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              3              105
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GABRG3 MUTATED        5      1      1      0      1
  GABRG3 WILD-TYPE     83     65     44     55     46
D1136V10, multiclass
        clus
vv       GABRG3 MUTATED GABRG3 WILD-TYPE
  CLUS_1              5               83
  CLUS_2              1               65
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1137) Variable = EPHA10 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA10 MUTATED        3     14      0      0
  EPHA10 WILD-TYPE    201    123     47      3
D1137V1, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              3              201
  CLUS_2             14              123
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA10 MUTATED        2      6      4      1      1
  EPHA10 WILD-TYPE     37     90     40     87     79
D1137V2, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              2               37
  CLUS_2              6               90
  CLUS_3              4               40
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA10 MUTATED        2      7      1      1      4
  EPHA10 WILD-TYPE     24     72     72     81     54
D1137V3, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              2               24
  CLUS_2              7               72
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA10 MUTATED        3      5      6      1
  EPHA10 WILD-TYPE    124     46     65     68
D1137V4, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              3              124
  CLUS_2              5               46
  CLUS_3              6               65
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA10 MUTATED        1      3      8      3      1
  EPHA10 WILD-TYPE     83     82     77     66     46
D1137V5, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               82
  CLUS_3              8               77
  CLUS_4              3               66
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EPHA10 MUTATED        3      3      2      8
  EPHA10 WILD-TYPE     92     71    119     72
D1137V6, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              3               71
  CLUS_3              2              119
  CLUS_4              8               72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  EPHA10 MUTATED        4      9      2      2      0      0
  EPHA10 WILD-TYPE     48     55     70    102     40     59
D1137V7, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              9               55
  CLUS_3              2               70
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EPHA10 MUTATED       16      0      1
  EPHA10 WILD-TYPE    201     75     98
D1137V8, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1             16              201
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EPHA10 MUTATED        6      2      5
  EPHA10 WILD-TYPE    115    106     67
D1137V9, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              2              106
  CLUS_3              5               67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EPHA10 MUTATED        4      0      4      1      4
  EPHA10 WILD-TYPE     84     66     41     54     43
D1137V10, multiclass
        clus
vv       EPHA10 MUTATED EPHA10 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              0               66
  CLUS_3              4               41
  CLUS_4              1               54
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1138) Variable = SLC44A4 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC44A4 MUTATED        1     11      3      0
  SLC44A4 WILD-TYPE    203    126     44      3
D1138V1, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               1               203
  CLUS_2              11               126
  CLUS_3               3                44
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC44A4 MUTATED        1      4      2      1      2
  SLC44A4 WILD-TYPE     38     92     42     87     78
D1138V2, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               4                92
  CLUS_3               2                42
  CLUS_4               1                87
  CLUS_5               2                78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC44A4 MUTATED        0      4      4      1      1
  SLC44A4 WILD-TYPE     26     75     69     81     57
D1138V3, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               4                75
  CLUS_3               4                69
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC44A4 MUTATED        2      6      1      1
  SLC44A4 WILD-TYPE    125     45     70     68
D1138V4, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               2               125
  CLUS_2               6                45
  CLUS_3               1                70
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC44A4 MUTATED        1      3      5      2      3
  SLC44A4 WILD-TYPE     83     82     80     67     44
D1138V5, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               1                83
  CLUS_2               3                82
  CLUS_3               5                80
  CLUS_4               2                67
  CLUS_5               3                44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SLC44A4 MUTATED        3      3      2      6
  SLC44A4 WILD-TYPE     92     71    119     74
D1138V6, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               3                92
  CLUS_2               3                71
  CLUS_3               2               119
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SLC44A4 MUTATED        1      6      3      2      2      1
  SLC44A4 WILD-TYPE     51     58     69    102     38     58
D1138V7, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               1                51
  CLUS_2               6                58
  CLUS_3               3                69
  CLUS_4               2               102
  CLUS_5               2                38
  CLUS_6               1                58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC44A4 MUTATED       11      2      2
  SLC44A4 WILD-TYPE    206     73     97
D1138V8, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1              11               206
  CLUS_2               2                73
  CLUS_3               2                97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  SLC44A4 MUTATED        6      4      0
  SLC44A4 WILD-TYPE    115    104     72
D1138V9, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               6               115
  CLUS_2               4               104
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SLC44A4 MUTATED        5      2      0      1      2
  SLC44A4 WILD-TYPE     83     64     45     54     45
D1138V10, multiclass
        clus
vv       SLC44A4 MUTATED SLC44A4 WILD-TYPE
  CLUS_1               5                83
  CLUS_2               2                64
  CLUS_3               0                45
  CLUS_4               1                54
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1139) Variable = PPL MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        2     13      3      0
  PPL WILD-TYPE    202    124     44      3
D1139V1, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           2           202
  CLUS_2          13           124
  CLUS_3           3            44
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPL MUTATED        0      9      3      2      2
  PPL WILD-TYPE     39     87     41     86     78
D1139V2, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           0            39
  CLUS_2           9            87
  CLUS_3           3            41
  CLUS_4           2            86
  CLUS_5           2            78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPL MUTATED        3      6      4      0      3
  PPL WILD-TYPE     23     73     69     82     55
D1139V3, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           3            23
  CLUS_2           6            73
  CLUS_3           4            69
  CLUS_4           0            82
  CLUS_5           3            55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        3     10      3      0
  PPL WILD-TYPE    124     41     68     69
D1139V4, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           3           124
  CLUS_2          10            41
  CLUS_3           3            68
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPL MUTATED        0      1     10      3      4
  PPL WILD-TYPE     84     84     75     66     43
D1139V5, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           0            84
  CLUS_2           1            84
  CLUS_3          10            75
  CLUS_4           3            66
  CLUS_5           4            43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPL MUTATED        6      1      3      8
  PPL WILD-TYPE     89     73    118     72
D1139V6, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           6            89
  CLUS_2           1            73
  CLUS_3           3           118
  CLUS_4           8            72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PPL MUTATED        4      9      3      1      1      0
  PPL WILD-TYPE     48     55     69    103     39     59
D1139V7, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           4            48
  CLUS_2           9            55
  CLUS_3           3            69
  CLUS_4           1           103
  CLUS_5           1            39
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED       16      1      1
  PPL WILD-TYPE    201     74     98
D1139V8, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1          16           201
  CLUS_2           1            74
  CLUS_3           1            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  PPL MUTATED        5      0     10
  PPL WILD-TYPE    116    108     62
D1139V9, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           5           116
  CLUS_2           0           108
  CLUS_3          10            62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPL MUTATED        2      0      8      0      5
  PPL WILD-TYPE     86     66     37     55     42
D1139V10, multiclass
        clus
vv       PPL MUTATED PPL WILD-TYPE
  CLUS_1           2            86
  CLUS_2           0            66
  CLUS_3           8            37
  CLUS_4           0            55
  CLUS_5           5            42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1140) Variable = TMEM63A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM63A MUTATED        1     11      1      0
  TMEM63A WILD-TYPE    203    126     46      3
D1140V1, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               1               203
  CLUS_2              11               126
  CLUS_3               1                46
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM63A MUTATED        1      6      2      0      1
  TMEM63A WILD-TYPE     38     90     42     88     79
D1140V2, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               1                38
  CLUS_2               6                90
  CLUS_3               2                42
  CLUS_4               0                88
  CLUS_5               1                79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM63A MUTATED        0      7      2      1      2
  TMEM63A WILD-TYPE     26     72     71     81     56
D1140V3, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               0                26
  CLUS_2               7                72
  CLUS_3               2                71
  CLUS_4               1                81
  CLUS_5               2                56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM63A MUTATED        1      5      5      1
  TMEM63A WILD-TYPE    126     46     66     68
D1140V4, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               1               126
  CLUS_2               5                46
  CLUS_3               5                66
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM63A MUTATED        1      3      7      0      1
  TMEM63A WILD-TYPE     83     82     78     69     46
D1140V5, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               1                83
  CLUS_2               3                82
  CLUS_3               7                78
  CLUS_4               0                69
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM63A MUTATED        2      2      2      6
  TMEM63A WILD-TYPE     93     72    119     74
D1140V6, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               2                93
  CLUS_2               2                72
  CLUS_3               2               119
  CLUS_4               6                74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMEM63A MUTATED        3      6      0      3      1      0
  TMEM63A WILD-TYPE     49     58     72    101     39     59
D1140V7, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               3                49
  CLUS_2               6                58
  CLUS_3               0                72
  CLUS_4               3               101
  CLUS_5               1                39
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM63A MUTATED       11      2      0
  TMEM63A WILD-TYPE    206     73     99
D1140V8, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1              11               206
  CLUS_2               2                73
  CLUS_3               0                99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM63A MUTATED        4      4      2
  TMEM63A WILD-TYPE    117    104     70
D1140V9, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               4               117
  CLUS_2               4               104
  CLUS_3               2                70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM63A MUTATED        5      1      2      0      2
  TMEM63A WILD-TYPE     83     65     43     55     45
D1140V10, multiclass
        clus
vv       TMEM63A MUTATED TMEM63A WILD-TYPE
  CLUS_1               5                83
  CLUS_2               1                65
  CLUS_3               2                43
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1141) Variable = ANKRD42 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD42 MUTATED        1      7      0      0
  ANKRD42 WILD-TYPE    203    130     47      3
D1141V1, multiclass
        clus
vv       ANKRD42 MUTATED ANKRD42 WILD-TYPE
  CLUS_1               1               203
  CLUS_2               7               130
  CLUS_3               0                47
  CLUS_4               0                 3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD42 MUTATED        1      3      1      0      0
  ANKRD42 WILD-TYPE     38     93     43     88     80
D1141V2, multiclass
        clus
vv       ANKRD42 MUTATED ANKRD42 WILD-TYPE
  CLUS_1               1                38
  CLUS_2               3                93
  CLUS_3               1                43
  CLUS_4               0                88
  CLUS_5               0                80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD42 MUTATED        0      2      3      1      1
  ANKRD42 WILD-TYPE     26     77     70     81     57
D1141V3, multiclass
        clus
vv       ANKRD42 MUTATED ANKRD42 WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                77
  CLUS_3               3                70
  CLUS_4               1                81
  CLUS_5               1                57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD42 MUTATED        1      5      0      1
  ANKRD42 WILD-TYPE    126     46     71     68
D1141V4, multiclass
        clus
vv       ANKRD42 MUTATED ANKRD42 WILD-TYPE
  CLUS_1               1               126
  CLUS_2               5                46
  CLUS_3               0                71
  CLUS_4               1                68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD42 MUTATED        0      2      3      1      1
  ANKRD42 WILD-TYPE     84     83     82     68     46
D1141V5, multiclass
        clus
vv       ANKRD42 MUTATED ANKRD42 WILD-TYPE
  CLUS_1               0                84
  CLUS_2               2                83
  CLUS_3               3                82
  CLUS_4               1                68
  CLUS_5               1                46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ANKRD42 MUTATED        1      1      1      4
  ANKRD42 WILD-TYPE     94     73    120     76
D1141V6, multiclass
        clus
vv       ANKRD42 MUTATED ANKRD42 WILD-TYPE
  CLUS_1               1                94
  CLUS_2               1                73
  CLUS_3               1               120
  CLUS_4               4                76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ANKRD42 MUTATED        5      2      0      1      0      0
  ANKRD42 WILD-TYPE     47     62     72    103     40     59
D1141V7, multiclass
        clus
vv       ANKRD42 MUTATED ANKRD42 WILD-TYPE
  CLUS_1               5                47
  CLUS_2               2                62
  CLUS_3               0                72
  CLUS_4               1               103
  CLUS_5               0                40
  CLUS_6               0                59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD42 MUTATED        6      1      1
  ANKRD42 WILD-TYPE    211     74     98
D1141V8, multiclass
        clus
vv       ANKRD42 MUTATED ANKRD42 WILD-TYPE
  CLUS_1               6               211
  CLUS_2               1                74
  CLUS_3               1                98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ANKRD42 MUTATED        3      0      0
  ANKRD42 WILD-TYPE    118    108     72
D1141V9, multiclass
        clus
vv       ANKRD42 MUTATED ANKRD42 WILD-TYPE
  CLUS_1               3               118
  CLUS_2               0               108
  CLUS_3               0                72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ANKRD42 MUTATED        1      0      0      0      2
  ANKRD42 WILD-TYPE     87     66     45     55     45
D1141V10, multiclass
        clus
vv       ANKRD42 MUTATED ANKRD42 WILD-TYPE
  CLUS_1               1                87
  CLUS_2               0                66
  CLUS_3               0                45
  CLUS_4               0                55
  CLUS_5               2                45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1142) Variable = AVPR1A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AVPR1A MUTATED        2     11      2      0
  AVPR1A WILD-TYPE    202    126     45      3
D1142V1, multiclass
        clus
vv       AVPR1A MUTATED AVPR1A WILD-TYPE
  CLUS_1              2              202
  CLUS_2             11              126
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AVPR1A MUTATED        0      7      2      1      3
  AVPR1A WILD-TYPE     39     89     42     87     77
D1142V2, multiclass
        clus
vv       AVPR1A MUTATED AVPR1A WILD-TYPE
  CLUS_1              0               39
  CLUS_2              7               89
  CLUS_3              2               42
  CLUS_4              1               87
  CLUS_5              3               77
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AVPR1A MUTATED        2      4      3      1      4
  AVPR1A WILD-TYPE     24     75     70     81     54
D1142V3, multiclass
        clus
vv       AVPR1A MUTATED AVPR1A WILD-TYPE
  CLUS_1              2               24
  CLUS_2              4               75
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              4               54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AVPR1A MUTATED        3      6      4      1
  AVPR1A WILD-TYPE    124     45     67     68
D1142V4, multiclass
        clus
vv       AVPR1A MUTATED AVPR1A WILD-TYPE
  CLUS_1              3              124
  CLUS_2              6               45
  CLUS_3              4               67
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AVPR1A MUTATED        3      1      6      2      2
  AVPR1A WILD-TYPE     81     84     79     67     45
D1142V5, multiclass
        clus
vv       AVPR1A MUTATED AVPR1A WILD-TYPE
  CLUS_1              3               81
  CLUS_2              1               84
  CLUS_3              6               79
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AVPR1A MUTATED        4      1      2      7
  AVPR1A WILD-TYPE     91     73    119     73
D1142V6, multiclass
        clus
vv       AVPR1A MUTATED AVPR1A WILD-TYPE
  CLUS_1              4               91
  CLUS_2              1               73
  CLUS_3              2              119
  CLUS_4              7               73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AVPR1A MUTATED        4      4      1      2      2      2
  AVPR1A WILD-TYPE     48     60     71    102     38     57
D1142V7, multiclass
        clus
vv       AVPR1A MUTATED AVPR1A WILD-TYPE
  CLUS_1              4               48
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              2               38
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AVPR1A MUTATED       12      1      2
  AVPR1A WILD-TYPE    205     74     97
D1142V8, multiclass
        clus
vv       AVPR1A MUTATED AVPR1A WILD-TYPE
  CLUS_1             12              205
  CLUS_2              1               74
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  AVPR1A MUTATED        3      4      6
  AVPR1A WILD-TYPE    118    104     66
D1142V9, multiclass
        clus
vv       AVPR1A MUTATED AVPR1A WILD-TYPE
  CLUS_1              3              118
  CLUS_2              4              104
  CLUS_3              6               66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AVPR1A MUTATED        4      1      3      1      4
  AVPR1A WILD-TYPE     84     65     42     54     43
D1142V10, multiclass
        clus
vv       AVPR1A MUTATED AVPR1A WILD-TYPE
  CLUS_1              4               84
  CLUS_2              1               65
  CLUS_3              3               42
  CLUS_4              1               54
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1143) Variable = VILL MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VILL MUTATED        2      8      1      0
  VILL WILD-TYPE    202    129     46      3
D1143V1, multiclass
        clus
vv       VILL MUTATED VILL WILD-TYPE
  CLUS_1            2            202
  CLUS_2            8            129
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VILL MUTATED        0      4      3      1      1
  VILL WILD-TYPE     39     92     41     87     79
D1143V2, multiclass
        clus
vv       VILL MUTATED VILL WILD-TYPE
  CLUS_1            0             39
  CLUS_2            4             92
  CLUS_3            3             41
  CLUS_4            1             87
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VILL MUTATED        1      3      2      0      4
  VILL WILD-TYPE     25     76     71     82     54
D1143V3, multiclass
        clus
vv       VILL MUTATED VILL WILD-TYPE
  CLUS_1            1             25
  CLUS_2            3             76
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VILL MUTATED        3      4      2      1
  VILL WILD-TYPE    124     47     69     68
D1143V4, multiclass
        clus
vv       VILL MUTATED VILL WILD-TYPE
  CLUS_1            3            124
  CLUS_2            4             47
  CLUS_3            2             69
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VILL MUTATED        0      2      5      1      2
  VILL WILD-TYPE     84     83     80     68     45
D1143V5, multiclass
        clus
vv       VILL MUTATED VILL WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3            5             80
  CLUS_4            1             68
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  VILL MUTATED        4      1      1      4
  VILL WILD-TYPE     91     73    120     76
D1143V6, multiclass
        clus
vv       VILL MUTATED VILL WILD-TYPE
  CLUS_1            4             91
  CLUS_2            1             73
  CLUS_3            1            120
  CLUS_4            4             76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  VILL MUTATED        2      6      1      1      0      1
  VILL WILD-TYPE     50     58     71    103     40     58
D1143V7, multiclass
        clus
vv       VILL MUTATED VILL WILD-TYPE
  CLUS_1            2             50
  CLUS_2            6             58
  CLUS_3            1             71
  CLUS_4            1            103
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VILL MUTATED        9      1      1
  VILL WILD-TYPE    208     74     98
D1143V8, multiclass
        clus
vv       VILL MUTATED VILL WILD-TYPE
  CLUS_1            9            208
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  VILL MUTATED        3      2      4
  VILL WILD-TYPE    118    106     68
D1143V9, multiclass
        clus
vv       VILL MUTATED VILL WILD-TYPE
  CLUS_1            3            118
  CLUS_2            2            106
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  VILL MUTATED        5      1      2      0      1
  VILL WILD-TYPE     83     65     43     55     46
D1143V10, multiclass
        clus
vv       VILL MUTATED VILL WILD-TYPE
  CLUS_1            5             83
  CLUS_2            1             65
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1144) Variable = ARRDC5 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARRDC5 MUTATED        0      4      0      0
  ARRDC5 WILD-TYPE    204    133     47      3
D1144V1, multiclass
        clus
vv       ARRDC5 MUTATED ARRDC5 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              4              133
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARRDC5 MUTATED        0      2      1      0      0
  ARRDC5 WILD-TYPE     39     94     43     88     80
D1144V2, multiclass
        clus
vv       ARRDC5 MUTATED ARRDC5 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              2               94
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARRDC5 MUTATED        0      1      2      0      1
  ARRDC5 WILD-TYPE     26     78     71     82     57
D1144V3, multiclass
        clus
vv       ARRDC5 MUTATED ARRDC5 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              1               78
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARRDC5 MUTATED        1      2      1      0
  ARRDC5 WILD-TYPE    126     49     70     69
D1144V4, multiclass
        clus
vv       ARRDC5 MUTATED ARRDC5 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARRDC5 MUTATED        0      3      1      0      0
  ARRDC5 WILD-TYPE     84     82     84     69     47
D1144V5, multiclass
        clus
vv       ARRDC5 MUTATED ARRDC5 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              3               82
  CLUS_3              1               84
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARRDC5 MUTATED        0      2      1      1
  ARRDC5 WILD-TYPE     95     72    120     79
D1144V6, multiclass
        clus
vv       ARRDC5 MUTATED ARRDC5 WILD-TYPE
  CLUS_1              0               95
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ARRDC5 MUTATED        1      1      0      2      0      0
  ARRDC5 WILD-TYPE     51     63     72    102     40     59
D1144V7, multiclass
        clus
vv       ARRDC5 MUTATED ARRDC5 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              1               63
  CLUS_3              0               72
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARRDC5 MUTATED        2      2      0
  ARRDC5 WILD-TYPE    215     73     99
D1144V8, multiclass
        clus
vv       ARRDC5 MUTATED ARRDC5 WILD-TYPE
  CLUS_1              2              215
  CLUS_2              2               73
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARRDC5 MUTATED        1      1      1
  ARRDC5 WILD-TYPE    120    107     71
D1144V9, multiclass
        clus
vv       ARRDC5 MUTATED ARRDC5 WILD-TYPE
  CLUS_1              1              120
  CLUS_2              1              107
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARRDC5 MUTATED        0      2      0      0      1
  ARRDC5 WILD-TYPE     88     64     45     55     46
D1144V10, multiclass
        clus
vv       ARRDC5 MUTATED ARRDC5 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              2               64
  CLUS_3              0               45
  CLUS_4              0               55
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1145) Variable = P2RY12 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY12 MUTATED        1      6      2      0
  P2RY12 WILD-TYPE    203    131     45      3
D1145V1, multiclass
        clus
vv       P2RY12 MUTATED P2RY12 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              6              131
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RY12 MUTATED        0      6      0      0      0
  P2RY12 WILD-TYPE     39     90     44     88     80
D1145V2, multiclass
        clus
vv       P2RY12 MUTATED P2RY12 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              6               90
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RY12 MUTATED        0      4      2      0      3
  P2RY12 WILD-TYPE     26     75     71     82     55
D1145V3, multiclass
        clus
vv       P2RY12 MUTATED P2RY12 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              2               71
  CLUS_4              0               82
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY12 MUTATED        2      6      1      0
  P2RY12 WILD-TYPE    125     45     70     69
D1145V4, multiclass
        clus
vv       P2RY12 MUTATED P2RY12 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              6               45
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RY12 MUTATED        0      0      6      1      1
  P2RY12 WILD-TYPE     84     85     79     68     46
D1145V5, multiclass
        clus
vv       P2RY12 MUTATED P2RY12 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              6               79
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  P2RY12 MUTATED        2      0      3      3
  P2RY12 WILD-TYPE     93     74    118     77
D1145V6, multiclass
        clus
vv       P2RY12 MUTATED P2RY12 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              0               74
  CLUS_3              3              118
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  P2RY12 MUTATED        1      5      3      0      0      0
  P2RY12 WILD-TYPE     51     59     69    104     40     59
D1145V7, multiclass
        clus
vv       P2RY12 MUTATED P2RY12 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              5               59
  CLUS_3              3               69
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  P2RY12 MUTATED        9      0      0
  P2RY12 WILD-TYPE    208     75     99
D1145V8, multiclass
        clus
vv       P2RY12 MUTATED P2RY12 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  P2RY12 MUTATED        1      1      4
  P2RY12 WILD-TYPE    120    107     68
D1145V9, multiclass
        clus
vv       P2RY12 MUTATED P2RY12 WILD-TYPE
  CLUS_1              1              120
  CLUS_2              1              107
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  P2RY12 MUTATED        1      0      3      0      2
  P2RY12 WILD-TYPE     87     66     42     55     45
D1145V10, multiclass
        clus
vv       P2RY12 MUTATED P2RY12 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              3               42
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1146) Variable = KIAA1217 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1217 MUTATED        8     15      2      1
  KIAA1217 WILD-TYPE    196    122     45      2
D1146V1, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                8                196
  CLUS_2               15                122
  CLUS_3                2                 45
  CLUS_4                1                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1217 MUTATED        2     15      2      4      2
  KIAA1217 WILD-TYPE     37     81     42     84     78
D1146V2, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                2                 37
  CLUS_2               15                 81
  CLUS_3                2                 42
  CLUS_4                4                 84
  CLUS_5                2                 78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1217 MUTATED        0      7      9      2      4
  KIAA1217 WILD-TYPE     26     72     64     80     54
D1146V3, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                7                 72
  CLUS_3                9                 64
  CLUS_4                2                 80
  CLUS_5                4                 54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1217 MUTATED        7     10      4      1
  KIAA1217 WILD-TYPE    120     41     67     68
D1146V4, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                7                120
  CLUS_2               10                 41
  CLUS_3                4                 67
  CLUS_4                1                 68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1217 MUTATED        4      1     13      3      3
  KIAA1217 WILD-TYPE     80     84     72     66     44
D1146V5, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                4                 80
  CLUS_2                1                 84
  CLUS_3               13                 72
  CLUS_4                3                 66
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA1217 MUTATED        5      1      5     13
  KIAA1217 WILD-TYPE     90     73    116     67
D1146V6, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                5                 90
  CLUS_2                1                 73
  CLUS_3                5                116
  CLUS_4               13                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA1217 MUTATED        6      5      7      6      0      3
  KIAA1217 WILD-TYPE     46     59     65     98     40     56
D1146V7, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                6                 46
  CLUS_2                5                 59
  CLUS_3                7                 65
  CLUS_4                6                 98
  CLUS_5                0                 40
  CLUS_6                3                 56
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1217 MUTATED       19      3      5
  KIAA1217 WILD-TYPE    198     72     94
D1146V8, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1               19                198
  CLUS_2                3                 72
  CLUS_3                5                 94
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA1217 MUTATED       13      3      5
  KIAA1217 WILD-TYPE    108    105     67
D1146V9, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1               13                108
  CLUS_2                3                105
  CLUS_3                5                 67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA1217 MUTATED        6      2      3      3      7
  KIAA1217 WILD-TYPE     82     64     42     52     40
D1146V10, multiclass
        clus
vv       KIAA1217 MUTATED KIAA1217 WILD-TYPE
  CLUS_1                6                 82
  CLUS_2                2                 64
  CLUS_3                3                 42
  CLUS_4                3                 52
  CLUS_5                7                 40
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1147) Variable = MEPCE MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEPCE MUTATED        0      7      1      0
  MEPCE WILD-TYPE    204    130     46      3
D1147V1, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             0             204
  CLUS_2             7             130
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEPCE MUTATED        0      5      2      0      0
  MEPCE WILD-TYPE     39     91     42     88     80
D1147V2, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEPCE MUTATED        0      1      4      0      2
  MEPCE WILD-TYPE     26     78     69     82     56
D1147V3, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEPCE MUTATED        0      6      1      0
  MEPCE WILD-TYPE    127     45     70     69
D1147V4, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             0             127
  CLUS_2             6              45
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEPCE MUTATED        0      0      6      0      2
  MEPCE WILD-TYPE     84     85     79     69     45
D1147V5, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             6              79
  CLUS_4             0              69
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MEPCE MUTATED        1      0      0      7
  MEPCE WILD-TYPE     94     74    121     73
D1147V6, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             7              73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MEPCE MUTATED        2      4      2      0      0      0
  MEPCE WILD-TYPE     50     60     70    104     40     59
D1147V7, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             2              50
  CLUS_2             4              60
  CLUS_3             2              70
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEPCE MUTATED        8      0      0
  MEPCE WILD-TYPE    209     75     99
D1147V8, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             8             209
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MEPCE MUTATED        3      0      4
  MEPCE WILD-TYPE    118    108     68
D1147V9, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0             108
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MEPCE MUTATED        2      0      2      0      3
  MEPCE WILD-TYPE     86     66     43     55     44
D1147V10, multiclass
        clus
vv       MEPCE MUTATED MEPCE WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1148) Variable = TRIM27 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM27 MUTATED        0      4      1      0
  TRIM27 WILD-TYPE    204    133     46      3
D1148V1, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              4              133
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIM27 MUTATED        1      2      1      0      0
  TRIM27 WILD-TYPE     38     94     43     88     80
D1148V2, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              2               94
  CLUS_3              1               43
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIM27 MUTATED        0      2      1      0      1
  TRIM27 WILD-TYPE     26     77     72     82     57
D1148V3, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              2               77
  CLUS_3              1               72
  CLUS_4              0               82
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM27 MUTATED        1      2      1      0
  TRIM27 WILD-TYPE    126     49     70     69
D1148V4, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              2               49
  CLUS_3              1               70
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIM27 MUTATED        0      0      2      0      3
  TRIM27 WILD-TYPE     84     85     83     69     44
D1148V5, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              0               85
  CLUS_3              2               83
  CLUS_4              0               69
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIM27 MUTATED        1      1      0      3
  TRIM27 WILD-TYPE     94     73    121     77
D1148V6, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              1               73
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIM27 MUTATED        1      3      1      0      0      0
  TRIM27 WILD-TYPE     51     61     71    104     40     59
D1148V7, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM27 MUTATED        5      0      0
  TRIM27 WILD-TYPE    212     75     99
D1148V8, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              0               75
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TRIM27 MUTATED        1      0      3
  TRIM27 WILD-TYPE    120    108     69
D1148V9, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              1              120
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIM27 MUTATED        1      0      1      0      2
  TRIM27 WILD-TYPE     87     66     44     55     45
D1148V10, multiclass
        clus
vv       TRIM27 MUTATED TRIM27 WILD-TYPE
  CLUS_1              1               87
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1149) Variable = PTPN12 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN12 MUTATED        3      8      1      0
  PTPN12 WILD-TYPE    201    129     46      3
D1149V1, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              8              129
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN12 MUTATED        3      5      0      1      1
  PTPN12 WILD-TYPE     36     91     44     87     79
D1149V2, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              3               36
  CLUS_2              5               91
  CLUS_3              0               44
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN12 MUTATED        1      2      3      1      2
  PTPN12 WILD-TYPE     25     77     70     81     56
D1149V3, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               77
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN12 MUTATED        2      4      2      1
  PTPN12 WILD-TYPE    125     47     69     68
D1149V4, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              4               47
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN12 MUTATED        2      1      5      2      1
  PTPN12 WILD-TYPE     82     84     80     67     46
D1149V5, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              1               84
  CLUS_3              5               80
  CLUS_4              2               67
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN12 MUTATED        2      1      3      5
  PTPN12 WILD-TYPE     93     73    118     75
D1149V6, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              1               73
  CLUS_3              3              118
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPN12 MUTATED        3      3      0      1      3      2
  PTPN12 WILD-TYPE     49     61     72    103     37     57
D1149V7, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              3               61
  CLUS_3              0               72
  CLUS_4              1              103
  CLUS_5              3               37
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN12 MUTATED        7      3      2
  PTPN12 WILD-TYPE    210     72     97
D1149V8, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              7              210
  CLUS_2              3               72
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN12 MUTATED        5      1      4
  PTPN12 WILD-TYPE    116    107     68
D1149V9, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              1              107
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN12 MUTATED        4      0      1      2      3
  PTPN12 WILD-TYPE     84     66     44     53     44
D1149V10, multiclass
        clus
vv       PTPN12 MUTATED PTPN12 WILD-TYPE
  CLUS_1              4               84
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              2               53
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1150) Variable = ITGAV MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGAV MUTATED        8      9      1      0
  ITGAV WILD-TYPE    196    128     46      3
D1150V1, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             8             196
  CLUS_2             9             128
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGAV MUTATED        2      8      1      5      0
  ITGAV WILD-TYPE     37     88     43     83     80
D1150V2, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             2              37
  CLUS_2             8              88
  CLUS_3             1              43
  CLUS_4             5              83
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGAV MUTATED        3      2      2      4      3
  ITGAV WILD-TYPE     23     77     71     78     55
D1150V3, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             3              23
  CLUS_2             2              77
  CLUS_3             2              71
  CLUS_4             4              78
  CLUS_5             3              55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGAV MUTATED        5      4      2      3
  ITGAV WILD-TYPE    122     47     69     66
D1150V4, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             5             122
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGAV MUTATED        1      3      6      3      4
  ITGAV WILD-TYPE     83     82     79     66     43
D1150V5, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             1              83
  CLUS_2             3              82
  CLUS_3             6              79
  CLUS_4             3              66
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ITGAV MUTATED        4      2      3      8
  ITGAV WILD-TYPE     91     72    118     72
D1150V6, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             4              91
  CLUS_2             2              72
  CLUS_3             3             118
  CLUS_4             8              72
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ITGAV MUTATED        6      6      1      3      1      1
  ITGAV WILD-TYPE     46     58     71    101     39     58
D1150V7, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             6              46
  CLUS_2             6              58
  CLUS_3             1              71
  CLUS_4             3             101
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGAV MUTATED       14      1      3
  ITGAV WILD-TYPE    203     74     96
D1150V8, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1            14             203
  CLUS_2             1              74
  CLUS_3             3              96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ITGAV MUTATED        8      3      3
  ITGAV WILD-TYPE    113    105     69
D1150V9, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             8             113
  CLUS_2             3             105
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ITGAV MUTATED        2      1      2      1      8
  ITGAV WILD-TYPE     86     65     43     54     39
D1150V10, multiclass
        clus
vv       ITGAV MUTATED ITGAV WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             8              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1151) Variable = PATL1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PATL1 MUTATED        0      7      0      0
  PATL1 WILD-TYPE    204    130     47      3
D1151V1, multiclass
        clus
vv       PATL1 MUTATED PATL1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PATL1 MUTATED        0      3      1      0      2
  PATL1 WILD-TYPE     39     93     43     88     78
D1151V2, multiclass
        clus
vv       PATL1 MUTATED PATL1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PATL1 MUTATED        1      2      1      1      1
  PATL1 WILD-TYPE     25     77     72     81     57
D1151V3, multiclass
        clus
vv       PATL1 MUTATED PATL1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             1              72
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PATL1 MUTATED        2      3      0      1
  PATL1 WILD-TYPE    125     48     71     68
D1151V4, multiclass
        clus
vv       PATL1 MUTATED PATL1 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             3              48
  CLUS_3             0              71
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PATL1 MUTATED        0      3      2      1      1
  PATL1 WILD-TYPE     84     82     83     68     46
D1151V5, multiclass
        clus
vv       PATL1 MUTATED PATL1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             3              82
  CLUS_3             2              83
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PATL1 MUTATED        1      2      2      2
  PATL1 WILD-TYPE     94     72    119     78
D1151V6, multiclass
        clus
vv       PATL1 MUTATED PATL1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PATL1 MUTATED        2      2      1      1      1      0
  PATL1 WILD-TYPE     50     62     71    103     39     59
D1151V7, multiclass
        clus
vv       PATL1 MUTATED PATL1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             2              62
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PATL1 MUTATED        5      1      1
  PATL1 WILD-TYPE    212     74     98
D1151V8, multiclass
        clus
vv       PATL1 MUTATED PATL1 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PATL1 MUTATED        3      1      1
  PATL1 WILD-TYPE    118    107     71
D1151V9, multiclass
        clus
vv       PATL1 MUTATED PATL1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PATL1 MUTATED        1      1      1      0      2
  PATL1 WILD-TYPE     87     65     44     55     45
D1151V10, multiclass
        clus
vv       PATL1 MUTATED PATL1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1152) Variable = KCNE1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNE1 MUTATED        1      2      1      0
  KCNE1 WILD-TYPE    203    135     46      3
D1152V1, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             2             135
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNE1 MUTATED        1      2      0      1      0
  KCNE1 WILD-TYPE     38     94     44     87     80
D1152V2, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             2              94
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNE1 MUTATED        0      1      2      0      1
  KCNE1 WILD-TYPE     26     78     71     82     57
D1152V3, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNE1 MUTATED        2      2      0      0
  KCNE1 WILD-TYPE    125     49     71     69
D1152V4, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             2              49
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNE1 MUTATED        0      0      2      2      0
  KCNE1 WILD-TYPE     84     85     83     67     47
D1152V5, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             2              83
  CLUS_4             2              67
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KCNE1 MUTATED        2      0      0      2
  KCNE1 WILD-TYPE     93     74    121     78
D1152V6, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KCNE1 MUTATED        0      0      3      1      0      0
  KCNE1 WILD-TYPE     52     64     69    103     40     59
D1152V7, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             0              64
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNE1 MUTATED        4      0      0
  KCNE1 WILD-TYPE    213     75     99
D1152V8, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             4             213
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  KCNE1 MUTATED        3      0      0
  KCNE1 WILD-TYPE    118    108     72
D1152V9, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0             108
  CLUS_3             0              72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KCNE1 MUTATED        2      0      0      0      1
  KCNE1 WILD-TYPE     86     66     45     55     46
D1152V10, multiclass
        clus
vv       KCNE1 MUTATED KCNE1 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1153) Variable = TLR4 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLR4 MUTATED       16      9      2      0
  TLR4 WILD-TYPE    188    128     45      3
D1153V1, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1           16            188
  CLUS_2            9            128
  CLUS_3            2             45
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TLR4 MUTATED        0     11      3      5      4
  TLR4 WILD-TYPE     39     85     41     83     76
D1153V2, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            0             39
  CLUS_2           11             85
  CLUS_3            3             41
  CLUS_4            5             83
  CLUS_5            4             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TLR4 MUTATED        2     10      5      5      2
  TLR4 WILD-TYPE     24     69     68     77     56
D1153V3, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            2             24
  CLUS_2           10             69
  CLUS_3            5             68
  CLUS_4            5             77
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLR4 MUTATED        9      5      8      2
  TLR4 WILD-TYPE    118     46     63     67
D1153V4, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            9            118
  CLUS_2            5             46
  CLUS_3            8             63
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TLR4 MUTATED        9      4      7      3      3
  TLR4 WILD-TYPE     75     81     78     66     44
D1153V5, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            9             75
  CLUS_2            4             81
  CLUS_3            7             78
  CLUS_4            3             66
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TLR4 MUTATED        6      2     11      7
  TLR4 WILD-TYPE     89     72    110     73
D1153V6, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            6             89
  CLUS_2            2             72
  CLUS_3           11            110
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TLR4 MUTATED        3      4      4      4      5      7
  TLR4 WILD-TYPE     49     60     68    100     35     52
D1153V7, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            3             49
  CLUS_2            4             60
  CLUS_3            4             68
  CLUS_4            4            100
  CLUS_5            5             35
  CLUS_6            7             52
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TLR4 MUTATED       16      1     10
  TLR4 WILD-TYPE    201     74     89
D1153V8, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1           16            201
  CLUS_2            1             74
  CLUS_3           10             89
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TLR4 MUTATED        4      8     10
  TLR4 WILD-TYPE    117    100     62
D1153V9, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            8            100
  CLUS_3           10             62
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TLR4 MUTATED        7      4      3      5      3
  TLR4 WILD-TYPE     81     62     42     50     44
D1153V10, multiclass
        clus
vv       TLR4 MUTATED TLR4 WILD-TYPE
  CLUS_1            7             81
  CLUS_2            4             62
  CLUS_3            3             42
  CLUS_4            5             50
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1154) Variable = XRCC2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRCC2 MUTATED        0      6      0      0
  XRCC2 WILD-TYPE    204    131     47      3
D1154V1, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             6             131
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XRCC2 MUTATED        0      3      0      0      0
  XRCC2 WILD-TYPE     39     93     44     88     80
D1154V2, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XRCC2 MUTATED        1      1      1      0      2
  XRCC2 WILD-TYPE     25     78     72     82     56
D1154V3, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRCC2 MUTATED        1      4      0      0
  XRCC2 WILD-TYPE    126     47     71     69
D1154V4, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             0              71
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XRCC2 MUTATED        1      1      3      0      1
  XRCC2 WILD-TYPE     83     84     82     69     46
D1154V5, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             3              82
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XRCC2 MUTATED        2      0      0      4
  XRCC2 WILD-TYPE     93     74    121     76
D1154V6, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             0              74
  CLUS_3             0             121
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XRCC2 MUTATED        1      3      1      0      0      1
  XRCC2 WILD-TYPE     51     61     71    104     40     58
D1154V7, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             1              51
  CLUS_2             3              61
  CLUS_3             1              71
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XRCC2 MUTATED        5      0      1
  XRCC2 WILD-TYPE    212     75     98
D1154V8, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XRCC2 MUTATED        1      0      2
  XRCC2 WILD-TYPE    120    108     70
D1154V9, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XRCC2 MUTATED        0      0      1      0      2
  XRCC2 WILD-TYPE     88     66     44     55     45
D1154V10, multiclass
        clus
vv       XRCC2 MUTATED XRCC2 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1155) Variable = CRYBB1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYBB1 MUTATED        3      6      1      0
  CRYBB1 WILD-TYPE    201    131     46      3
D1155V1, multiclass
        clus
vv       CRYBB1 MUTATED CRYBB1 WILD-TYPE
  CLUS_1              3              201
  CLUS_2              6              131
  CLUS_3              1               46
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRYBB1 MUTATED        0      3      1      3      0
  CRYBB1 WILD-TYPE     39     93     43     85     80
D1155V2, multiclass
        clus
vv       CRYBB1 MUTATED CRYBB1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              1               43
  CLUS_4              3               85
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRYBB1 MUTATED        0      4      3      1      1
  CRYBB1 WILD-TYPE     26     75     70     81     57
D1155V3, multiclass
        clus
vv       CRYBB1 MUTATED CRYBB1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYBB1 MUTATED        0      5      3      1
  CRYBB1 WILD-TYPE    127     46     68     68
D1155V4, multiclass
        clus
vv       CRYBB1 MUTATED CRYBB1 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              5               46
  CLUS_3              3               68
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRYBB1 MUTATED        2      1      4      0      3
  CRYBB1 WILD-TYPE     82     84     81     69     44
D1155V5, multiclass
        clus
vv       CRYBB1 MUTATED CRYBB1 WILD-TYPE
  CLUS_1              2               82
  CLUS_2              1               84
  CLUS_3              4               81
  CLUS_4              0               69
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CRYBB1 MUTATED        1      2      2      5
  CRYBB1 WILD-TYPE     94     72    119     75
D1155V6, multiclass
        clus
vv       CRYBB1 MUTATED CRYBB1 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              2              119
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CRYBB1 MUTATED        4      4      1      0      0      1
  CRYBB1 WILD-TYPE     48     60     71    104     40     58
D1155V7, multiclass
        clus
vv       CRYBB1 MUTATED CRYBB1 WILD-TYPE
  CLUS_1              4               48
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CRYBB1 MUTATED        9      0      1
  CRYBB1 WILD-TYPE    208     75     98
D1155V8, multiclass
        clus
vv       CRYBB1 MUTATED CRYBB1 WILD-TYPE
  CLUS_1              9              208
  CLUS_2              0               75
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CRYBB1 MUTATED        5      0      1
  CRYBB1 WILD-TYPE    116    108     71
D1155V9, multiclass
        clus
vv       CRYBB1 MUTATED CRYBB1 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              0              108
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CRYBB1 MUTATED        2      0      1      0      3
  CRYBB1 WILD-TYPE     86     66     44     55     44
D1155V10, multiclass
        clus
vv       CRYBB1 MUTATED CRYBB1 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1156) Variable = MED23 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED23 MUTATED        4     13      1      0
  MED23 WILD-TYPE    200    124     46      3
D1156V1, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             4             200
  CLUS_2            13             124
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED23 MUTATED        2      5      3      1      2
  MED23 WILD-TYPE     37     91     41     87     78
D1156V2, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             2              37
  CLUS_2             5              91
  CLUS_3             3              41
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED23 MUTATED        2      7      2      3      4
  MED23 WILD-TYPE     24     72     71     79     54
D1156V3, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             7              72
  CLUS_3             2              71
  CLUS_4             3              79
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED23 MUTATED        4      5      5      4
  MED23 WILD-TYPE    123     46     66     65
D1156V4, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             4             123
  CLUS_2             5              46
  CLUS_3             5              66
  CLUS_4             4              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED23 MUTATED        1      1      7      4      3
  MED23 WILD-TYPE     83     84     78     65     44
D1156V5, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             7              78
  CLUS_4             4              65
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MED23 MUTATED        7      2      3      4
  MED23 WILD-TYPE     88     72    118     76
D1156V6, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             7              88
  CLUS_2             2              72
  CLUS_3             3             118
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  MED23 MUTATED        3      9      1      2      2      1
  MED23 WILD-TYPE     49     55     71    102     38     58
D1156V7, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             9              55
  CLUS_3             1              71
  CLUS_4             2             102
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED23 MUTATED       14      2      2
  MED23 WILD-TYPE    203     73     97
D1156V8, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MED23 MUTATED        4      2      7
  MED23 WILD-TYPE    117    106     65
D1156V9, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             2             106
  CLUS_3             7              65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MED23 MUTATED        7      0      4      0      2
  MED23 WILD-TYPE     81     66     41     55     45
D1156V10, multiclass
        clus
vv       MED23 MUTATED MED23 WILD-TYPE
  CLUS_1             7              81
  CLUS_2             0              66
  CLUS_3             4              41
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1157) Variable = SFRS2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS2 MUTATED        0      4      0      0
  SFRS2 WILD-TYPE    204    133     47      3
D1157V1, multiclass
        clus
vv       SFRS2 MUTATED SFRS2 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             4             133
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS2 MUTATED        0      3      1      0      0
  SFRS2 WILD-TYPE     39     93     43     88     80
D1157V2, multiclass
        clus
vv       SFRS2 MUTATED SFRS2 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS2 MUTATED        0      1      2      1      0
  SFRS2 WILD-TYPE     26     78     71     81     58
D1157V3, multiclass
        clus
vv       SFRS2 MUTATED SFRS2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS2 MUTATED        1      1      1      1
  SFRS2 WILD-TYPE    126     50     70     68
D1157V4, multiclass
        clus
vv       SFRS2 MUTATED SFRS2 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             1              50
  CLUS_3             1              70
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS2 MUTATED        0      2      2      0      0
  SFRS2 WILD-TYPE     84     83     83     69     47
D1157V5, multiclass
        clus
vv       SFRS2 MUTATED SFRS2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             2              83
  CLUS_4             0              69
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SFRS2 MUTATED        1      2      0      1
  SFRS2 WILD-TYPE     94     72    121     79
D1157V6, multiclass
        clus
vv       SFRS2 MUTATED SFRS2 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             1              79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SFRS2 MUTATED        0      1      0      2      1      0
  SFRS2 WILD-TYPE     52     63     72    102     39     59
D1157V7, multiclass
        clus
vv       SFRS2 MUTATED SFRS2 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             1              63
  CLUS_3             0              72
  CLUS_4             2             102
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SFRS2 MUTATED        2      2      0
  SFRS2 WILD-TYPE    215     73     99
D1157V8, multiclass
        clus
vv       SFRS2 MUTATED SFRS2 WILD-TYPE
  CLUS_1             2             215
  CLUS_2             2              73
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  SFRS2 MUTATED        0      2      2
  SFRS2 WILD-TYPE    121    106     70
D1157V9, multiclass
        clus
vv       SFRS2 MUTATED SFRS2 WILD-TYPE
  CLUS_1             0             121
  CLUS_2             2             106
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SFRS2 MUTATED        2      1      1      0      0
  SFRS2 WILD-TYPE     86     65     44     55     47
D1157V10, multiclass
        clus
vv       SFRS2 MUTATED SFRS2 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1158) Variable = SGK196 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK196 MUTATED        0      7      0      0
  SGK196 WILD-TYPE    204    130     47      3
D1158V1, multiclass
        clus
vv       SGK196 MUTATED SGK196 WILD-TYPE
  CLUS_1              0              204
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGK196 MUTATED        0      3      0      0      2
  SGK196 WILD-TYPE     39     93     44     88     78
D1158V2, multiclass
        clus
vv       SGK196 MUTATED SGK196 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              3               93
  CLUS_3              0               44
  CLUS_4              0               88
  CLUS_5              2               78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGK196 MUTATED        1      1      3      1      0
  SGK196 WILD-TYPE     25     78     70     81     58
D1158V3, multiclass
        clus
vv       SGK196 MUTATED SGK196 WILD-TYPE
  CLUS_1              1               25
  CLUS_2              1               78
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              0               58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK196 MUTATED        1      4      0      1
  SGK196 WILD-TYPE    126     47     71     68
D1158V4, multiclass
        clus
vv       SGK196 MUTATED SGK196 WILD-TYPE
  CLUS_1              1              126
  CLUS_2              4               47
  CLUS_3              0               71
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGK196 MUTATED        0      2      2      1      1
  SGK196 WILD-TYPE     84     83     83     68     46
D1158V5, multiclass
        clus
vv       SGK196 MUTATED SGK196 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              2               83
  CLUS_4              1               68
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SGK196 MUTATED        2      3      0      1
  SGK196 WILD-TYPE     93     71    121     79
D1158V6, multiclass
        clus
vv       SGK196 MUTATED SGK196 WILD-TYPE
  CLUS_1              2               93
  CLUS_2              3               71
  CLUS_3              0              121
  CLUS_4              1               79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SGK196 MUTATED        1      2      1      2      1      0
  SGK196 WILD-TYPE     51     62     71    102     39     59
D1158V7, multiclass
        clus
vv       SGK196 MUTATED SGK196 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              2               62
  CLUS_3              1               71
  CLUS_4              2              102
  CLUS_5              1               39
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SGK196 MUTATED        5      2      0
  SGK196 WILD-TYPE    212     73     99
D1158V8, multiclass
        clus
vv       SGK196 MUTATED SGK196 WILD-TYPE
  CLUS_1              5              212
  CLUS_2              2               73
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SGK196 MUTATED        2      2      1
  SGK196 WILD-TYPE    119    106     71
D1158V9, multiclass
        clus
vv       SGK196 MUTATED SGK196 WILD-TYPE
  CLUS_1              2              119
  CLUS_2              2              106
  CLUS_3              1               71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SGK196 MUTATED        0      2      1      0      2
  SGK196 WILD-TYPE     88     64     44     55     45
D1158V10, multiclass
        clus
vv       SGK196 MUTATED SGK196 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              2               64
  CLUS_3              1               44
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1159) Variable = TDG MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDG MUTATED        1      5      0      0
  TDG WILD-TYPE    203    132     47      3
D1159V1, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           1           203
  CLUS_2           5           132
  CLUS_3           0            47
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TDG MUTATED        0      3      1      1      1
  TDG WILD-TYPE     39     93     43     87     79
D1159V2, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           0            39
  CLUS_2           3            93
  CLUS_3           1            43
  CLUS_4           1            87
  CLUS_5           1            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TDG MUTATED        2      0      4      0      0
  TDG WILD-TYPE     24     79     69     82     58
D1159V3, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           2            24
  CLUS_2           0            79
  CLUS_3           4            69
  CLUS_4           0            82
  CLUS_5           0            58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDG MUTATED        2      4      0      0
  TDG WILD-TYPE    125     47     71     69
D1159V4, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           2           125
  CLUS_2           4            47
  CLUS_3           0            71
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TDG MUTATED        0      1      4      1      0
  TDG WILD-TYPE     84     84     81     68     47
D1159V5, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           0            84
  CLUS_2           1            84
  CLUS_3           4            81
  CLUS_4           1            68
  CLUS_5           0            47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TDG MUTATED        2      1      2      1
  TDG WILD-TYPE     93     73    119     79
D1159V6, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           2            93
  CLUS_2           1            73
  CLUS_3           2           119
  CLUS_4           1            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TDG MUTATED        1      2      1      1      1      0
  TDG WILD-TYPE     51     62     71    103     39     59
D1159V7, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           1            51
  CLUS_2           2            62
  CLUS_3           1            71
  CLUS_4           1           103
  CLUS_5           1            39
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TDG MUTATED        4      1      1
  TDG WILD-TYPE    213     74     98
D1159V8, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           4           213
  CLUS_2           1            74
  CLUS_3           1            98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  TDG MUTATED        2      1      3
  TDG WILD-TYPE    119    107     69
D1159V9, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           2           119
  CLUS_2           1           107
  CLUS_3           3            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TDG MUTATED        0      1      3      0      2
  TDG WILD-TYPE     88     65     42     55     45
D1159V10, multiclass
        clus
vv       TDG MUTATED TDG WILD-TYPE
  CLUS_1           0            88
  CLUS_2           1            65
  CLUS_3           3            42
  CLUS_4           0            55
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1160) Variable = KIAA0408 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0408 MUTATED        4      9      1      0
  KIAA0408 WILD-TYPE    200    128     46      3
D1160V1, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                4                200
  CLUS_2                9                128
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0408 MUTATED        2      6      2      1      1
  KIAA0408 WILD-TYPE     37     90     42     87     79
D1160V2, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                2                 37
  CLUS_2                6                 90
  CLUS_3                2                 42
  CLUS_4                1                 87
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0408 MUTATED        1      4      4      2      2
  KIAA0408 WILD-TYPE     25     75     69     80     56
D1160V3, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                4                 75
  CLUS_3                4                 69
  CLUS_4                2                 80
  CLUS_5                2                 56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0408 MUTATED        2      6      2      3
  KIAA0408 WILD-TYPE    125     45     69     66
D1160V4, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                2                125
  CLUS_2                6                 45
  CLUS_3                2                 69
  CLUS_4                3                 66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0408 MUTATED        3      3      5      1      2
  KIAA0408 WILD-TYPE     81     82     80     68     45
D1160V5, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                3                 81
  CLUS_2                3                 82
  CLUS_3                5                 80
  CLUS_4                1                 68
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  KIAA0408 MUTATED        2      2      5      5
  KIAA0408 WILD-TYPE     93     72    116     75
D1160V6, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                2                 72
  CLUS_3                5                116
  CLUS_4                5                 75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  KIAA0408 MUTATED        4      1      2      5      2      0
  KIAA0408 WILD-TYPE     48     63     70     99     38     59
D1160V7, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                4                 48
  CLUS_2                1                 63
  CLUS_3                2                 70
  CLUS_4                5                 99
  CLUS_5                2                 38
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0408 MUTATED        9      2      3
  KIAA0408 WILD-TYPE    208     73     96
D1160V8, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                9                208
  CLUS_2                2                 73
  CLUS_3                3                 96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  KIAA0408 MUTATED        5      4      2
  KIAA0408 WILD-TYPE    116    104     70
D1160V9, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                5                116
  CLUS_2                4                104
  CLUS_3                2                 70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  KIAA0408 MUTATED        5      1      1      1      3
  KIAA0408 WILD-TYPE     83     65     44     54     44
D1160V10, multiclass
        clus
vv       KIAA0408 MUTATED KIAA0408 WILD-TYPE
  CLUS_1                5                 83
  CLUS_2                1                 65
  CLUS_3                1                 44
  CLUS_4                1                 54
  CLUS_5                3                 44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1161) Variable = PIAS1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIAS1 MUTATED        2      7      0      0
  PIAS1 WILD-TYPE    202    130     47      3
D1161V1, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIAS1 MUTATED        0      5      0      1      2
  PIAS1 WILD-TYPE     39     91     44     87     78
D1161V2, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIAS1 MUTATED        1      4      2      0      0
  PIAS1 WILD-TYPE     25     75     71     82     58
D1161V3, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIAS1 MUTATED        1      4      2      0
  PIAS1 WILD-TYPE    126     47     69     69
D1161V4, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIAS1 MUTATED        1      0      6      0      1
  PIAS1 WILD-TYPE     83     85     79     69     46
D1161V5, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             6              79
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIAS1 MUTATED        1      0      3      4
  PIAS1 WILD-TYPE     94     74    118     76
D1161V6, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             3             118
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PIAS1 MUTATED        3      4      1      1      0      0
  PIAS1 WILD-TYPE     49     60     71    103     40     59
D1161V7, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             4              60
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PIAS1 MUTATED        7      1      1
  PIAS1 WILD-TYPE    210     74     98
D1161V8, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PIAS1 MUTATED        2      2      4
  PIAS1 WILD-TYPE    119    106     68
D1161V9, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             2             106
  CLUS_3             4              68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PIAS1 MUTATED        1      0      3      1      3
  PIAS1 WILD-TYPE     87     66     42     54     44
D1161V10, multiclass
        clus
vv       PIAS1 MUTATED PIAS1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1162) Variable = FLJ10357 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLJ10357 MUTATED        0     19      1      0
  FLJ10357 WILD-TYPE    204    118     46      3
D1162V1, multiclass
        clus
vv       FLJ10357 MUTATED FLJ10357 WILD-TYPE
  CLUS_1                0                204
  CLUS_2               19                118
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLJ10357 MUTATED        3     11      1      0      0
  FLJ10357 WILD-TYPE     36     85     43     88     80
D1162V2, multiclass
        clus
vv       FLJ10357 MUTATED FLJ10357 WILD-TYPE
  CLUS_1                3                 36
  CLUS_2               11                 85
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLJ10357 MUTATED        0      4      5      2      7
  FLJ10357 WILD-TYPE     26     75     68     80     51
D1162V3, multiclass
        clus
vv       FLJ10357 MUTATED FLJ10357 WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                4                 75
  CLUS_3                5                 68
  CLUS_4                2                 80
  CLUS_5                7                 51
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLJ10357 MUTATED        3     10      3      2
  FLJ10357 WILD-TYPE    124     41     68     67
D1162V4, multiclass
        clus
vv       FLJ10357 MUTATED FLJ10357 WILD-TYPE
  CLUS_1                3                124
  CLUS_2               10                 41
  CLUS_3                3                 68
  CLUS_4                2                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLJ10357 MUTATED        0      4     12      2      2
  FLJ10357 WILD-TYPE     84     81     73     67     45
D1162V5, multiclass
        clus
vv       FLJ10357 MUTATED FLJ10357 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                4                 81
  CLUS_3               12                 73
  CLUS_4                2                 67
  CLUS_5                2                 45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FLJ10357 MUTATED        3      4      0     13
  FLJ10357 WILD-TYPE     92     70    121     67
D1162V6, multiclass
        clus
vv       FLJ10357 MUTATED FLJ10357 WILD-TYPE
  CLUS_1                3                 92
  CLUS_2                4                 70
  CLUS_3                0                121
  CLUS_4               13                 67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FLJ10357 MUTATED        5      7      2      5      1      0
  FLJ10357 WILD-TYPE     47     57     70     99     39     59
D1162V7, multiclass
        clus
vv       FLJ10357 MUTATED FLJ10357 WILD-TYPE
  CLUS_1                5                 47
  CLUS_2                7                 57
  CLUS_3                2                 70
  CLUS_4                5                 99
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  FLJ10357 MUTATED       17      3      0
  FLJ10357 WILD-TYPE    200     72     99
D1162V8, multiclass
        clus
vv       FLJ10357 MUTATED FLJ10357 WILD-TYPE
  CLUS_1               17                200
  CLUS_2                3                 72
  CLUS_3                0                 99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  FLJ10357 MUTATED        5      2      7
  FLJ10357 WILD-TYPE    116    106     65
D1162V9, multiclass
        clus
vv       FLJ10357 MUTATED FLJ10357 WILD-TYPE
  CLUS_1                5                116
  CLUS_2                2                106
  CLUS_3                7                 65
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FLJ10357 MUTATED        5      1      2      0      6
  FLJ10357 WILD-TYPE     83     65     43     55     41
D1162V10, multiclass
        clus
vv       FLJ10357 MUTATED FLJ10357 WILD-TYPE
  CLUS_1                5                 83
  CLUS_2                1                 65
  CLUS_3                2                 43
  CLUS_4                0                 55
  CLUS_5                6                 41
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1163) Variable = SMC5 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC5 MUTATED        3      7      0      0
  SMC5 WILD-TYPE    201    130     47      3
D1163V1, multiclass
        clus
vv       SMC5 MUTATED SMC5 WILD-TYPE
  CLUS_1            3            201
  CLUS_2            7            130
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMC5 MUTATED        2      4      1      1      0
  SMC5 WILD-TYPE     37     92     43     87     80
D1163V2, multiclass
        clus
vv       SMC5 MUTATED SMC5 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            4             92
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMC5 MUTATED        0      4      2      1      3
  SMC5 WILD-TYPE     26     75     71     81     55
D1163V3, multiclass
        clus
vv       SMC5 MUTATED SMC5 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            2             71
  CLUS_4            1             81
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC5 MUTATED        3      4      1      2
  SMC5 WILD-TYPE    124     47     70     67
D1163V4, multiclass
        clus
vv       SMC5 MUTATED SMC5 WILD-TYPE
  CLUS_1            3            124
  CLUS_2            4             47
  CLUS_3            1             70
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMC5 MUTATED        0      1      5      1      2
  SMC5 WILD-TYPE     84     84     80     68     45
D1163V5, multiclass
        clus
vv       SMC5 MUTATED SMC5 WILD-TYPE
  CLUS_1            0             84
  CLUS_2            1             84
  CLUS_3            5             80
  CLUS_4            1             68
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SMC5 MUTATED        2      2      0      5
  SMC5 WILD-TYPE     93     72    121     75
D1163V6, multiclass
        clus
vv       SMC5 MUTATED SMC5 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            2             72
  CLUS_3            0            121
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SMC5 MUTATED        4      3      1      2      0      0
  SMC5 WILD-TYPE     48     61     71    102     40     59
D1163V7, multiclass
        clus
vv       SMC5 MUTATED SMC5 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            3             61
  CLUS_3            1             71
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMC5 MUTATED        9      0      1
  SMC5 WILD-TYPE    208     75     98
D1163V8, multiclass
        clus
vv       SMC5 MUTATED SMC5 WILD-TYPE
  CLUS_1            9            208
  CLUS_2            0             75
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SMC5 MUTATED        4      2      1
  SMC5 WILD-TYPE    117    106     71
D1163V9, multiclass
        clus
vv       SMC5 MUTATED SMC5 WILD-TYPE
  CLUS_1            4            117
  CLUS_2            2            106
  CLUS_3            1             71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SMC5 MUTATED        3      0      0      1      3
  SMC5 WILD-TYPE     85     66     45     54     44
D1163V10, multiclass
        clus
vv       SMC5 MUTATED SMC5 WILD-TYPE
  CLUS_1            3             85
  CLUS_2            0             66
  CLUS_3            0             45
  CLUS_4            1             54
  CLUS_5            3             44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1164) Variable = ATOH1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATOH1 MUTATED        0      6      0      0
  ATOH1 WILD-TYPE    204    131     47      3
D1164V1, multiclass
        clus
vv       ATOH1 MUTATED ATOH1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             6             131
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATOH1 MUTATED        0      2      2      0      1
  ATOH1 WILD-TYPE     39     94     42     88     79
D1164V2, multiclass
        clus
vv       ATOH1 MUTATED ATOH1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             2              94
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATOH1 MUTATED        2      2      0      0      1
  ATOH1 WILD-TYPE     24     77     73     82     57
D1164V3, multiclass
        clus
vv       ATOH1 MUTATED ATOH1 WILD-TYPE
  CLUS_1             2              24
  CLUS_2             2              77
  CLUS_3             0              73
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATOH1 MUTATED        2      2      1      0
  ATOH1 WILD-TYPE    125     49     70     69
D1164V4, multiclass
        clus
vv       ATOH1 MUTATED ATOH1 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             2              49
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATOH1 MUTATED        0      0      3      1      2
  ATOH1 WILD-TYPE     84     85     82     68     45
D1164V5, multiclass
        clus
vv       ATOH1 MUTATED ATOH1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             3              82
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ATOH1 MUTATED        1      0      1      4
  ATOH1 WILD-TYPE     94     74    120     76
D1164V6, multiclass
        clus
vv       ATOH1 MUTATED ATOH1 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             1             120
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ATOH1 MUTATED        2      4      0      0      0      0
  ATOH1 WILD-TYPE     50     60     72    104     40     59
D1164V7, multiclass
        clus
vv       ATOH1 MUTATED ATOH1 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             4              60
  CLUS_3             0              72
  CLUS_4             0             104
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATOH1 MUTATED        6      0      0
  ATOH1 WILD-TYPE    211     75     99
D1164V8, multiclass
        clus
vv       ATOH1 MUTATED ATOH1 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ATOH1 MUTATED        2      0      3
  ATOH1 WILD-TYPE    119    108     69
D1164V9, multiclass
        clus
vv       ATOH1 MUTATED ATOH1 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ATOH1 MUTATED        1      0      3      0      1
  ATOH1 WILD-TYPE     87     66     42     55     46
D1164V10, multiclass
        clus
vv       ATOH1 MUTATED ATOH1 WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1165) Variable = AAMP MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AAMP MUTATED        1      1      1      0
  AAMP WILD-TYPE    203    136     46      3
D1165V1, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            1            203
  CLUS_2            1            136
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AAMP MUTATED        0      2      0      0      0
  AAMP WILD-TYPE     39     94     44     88     80
D1165V2, multiclass
[1] "Remove cluster labels:" "AAMP MUTATED"          
clus
  AAMP MUTATED AAMP WILD-TYPE 
             2            345 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6709 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7704     TCGA-BR-7715     TCGA-BR-7716     TCGA-BR-7717 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7722     TCGA-BR-7723     TCGA-BR-7851     TCGA-BR-7901 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7957     TCGA-BR-7958     TCGA-BR-7959     TCGA-BR-8058 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8059     TCGA-BR-8060     TCGA-BR-8077     TCGA-BR-8078 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284     TCGA-BR-8285 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291     TCGA-BR-8295 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8297     TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8372     TCGA-BR-8373     TCGA-BR-8380     TCGA-BR-8381 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8382     TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8484 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487     TCGA-BR-8588 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8589     TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8686 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8687     TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A44U 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A452     TCGA-BR-A453     TCGA-BR-A4CQ     TCGA-BR-A4CR 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4CS     TCGA-BR-A4IU     TCGA-BR-A4IV     TCGA-BR-A4IY 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4IZ     TCGA-BR-A4J1     TCGA-BR-A4J2     TCGA-BR-A4J4 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4J5     TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4PD     TCGA-BR-A4PE     TCGA-BR-A4PF     TCGA-BR-A4QI 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4QL     TCGA-BR-A4QM     TCGA-CD-5798     TCGA-CD-5799 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-5800     TCGA-CD-5801     TCGA-CD-5802     TCGA-CD-5803 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-5804     TCGA-CD-5813     TCGA-CD-8524     TCGA-CD-8525 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8526     TCGA-CD-8527     TCGA-CD-8528     TCGA-CD-8529 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532     TCGA-CD-8533 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536     TCGA-CD-A486 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48A     TCGA-CD-A48C 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CD-A4MJ 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4441     TCGA-CG-5716     TCGA-CG-5717 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8573 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-8574     TCGA-D7-8575     TCGA-D7-8576     TCGA-D7-8578 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-8579     TCGA-D7-A4YT     TCGA-D7-A4YU     TCGA-D7-A4YV 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A4YX     TCGA-D7-A4YY     TCGA-D7-A4Z0     TCGA-D7-A6ET 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A6EV     TCGA-D7-A6EX     TCGA-D7-A6EY     TCGA-D7-A6EZ 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A6F0     TCGA-D7-A6F2     TCGA-D7-A747     TCGA-D7-A748 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A74A     TCGA-D7-A74B     TCGA-EQ-5647     TCGA-EQ-8122 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-EQ-A4SO     TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-F1-A448     TCGA-F1-A72C     TCGA-FP-7735     TCGA-FP-7829 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FP-7916     TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FP-8210     TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FP-A4BF     TCGA-FP-A8CX     TCGA-FP-A9TM     TCGA-HF-7131 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HF-7132     TCGA-HF-7133     TCGA-HF-7134     TCGA-HF-7136 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HF-A5NB     TCGA-HJ-7597     TCGA-HU-8238     TCGA-HU-8243 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-8244     TCGA-HU-8249     TCGA-HU-8602     TCGA-HU-8604 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-8608     TCGA-HU-8610     TCGA-HU-A4G2     TCGA-HU-A4G3 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4G6     TCGA-HU-A4G8     TCGA-HU-A4G9     TCGA-HU-A4GC 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GJ 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GP     TCGA-HU-A4GQ     TCGA-HU-A4GT 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4GU     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H0 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4H2     TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4H6     TCGA-HU-A4H8     TCGA-HU-A4HB     TCGA-HU-A4HD 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-A6RI     TCGA-IN-A6RJ     TCGA-IN-A6RL     TCGA-IN-A6RN 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-A6RO     TCGA-IN-A6RP     TCGA-IN-A6RR     TCGA-IN-A6RS 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-A7NR     TCGA-IN-A7NT     TCGA-IN-A7NU     TCGA-IN-AB1V 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-AB1X     TCGA-IP-7968     TCGA-KB-A6F5     TCGA-KB-A6F7 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-KB-A93G     TCGA-KB-A93J     TCGA-MX-A5UG     TCGA-MX-A5UJ 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-MX-A663     TCGA-MX-A666     TCGA-R5-A7O7     TCGA-R5-A7ZE 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-R5-A7ZF     TCGA-R5-A7ZI     TCGA-R5-A7ZR     TCGA-R5-A804 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-R5-A805     TCGA-RD-A7BS     TCGA-RD-A7BT     TCGA-RD-A7BW 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-RD-A7C1     TCGA-RD-A8MV     TCGA-RD-A8MW     TCGA-RD-A8N0 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-RD-A8N1     TCGA-RD-A8N2     TCGA-RD-A8N4     TCGA-RD-A8N5 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-RD-A8N6     TCGA-RD-A8N9     TCGA-SW-A7EA     TCGA-SW-A7EB 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A8DL     TCGA-VQ-A8DT     TCGA-VQ-A8DU     TCGA-VQ-A8DV 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A8DZ     TCGA-VQ-A8E2     TCGA-VQ-A8E7     TCGA-VQ-A8P2 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A8P3     TCGA-VQ-A8PE     TCGA-VQ-A8PK     TCGA-VQ-A8PM 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A8PQ     TCGA-VQ-A91Q     TCGA-VQ-A91U     TCGA-VQ-A91V 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A92D     TCGA-VQ-A94T     TCGA-VQ-AA64     TCGA-VQ-AA68 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-AA69     TCGA-VQ-AA6A     TCGA-VQ-AA6B     TCGA-VQ-AA6F 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-AA6G     TCGA-VQ-AA6I     TCGA-VQ-AA6J     TCGA-VQ-AA6K 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-ZA-A8F6 
"AAMP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AAMP MUTATED        0      1      0      0      1
  AAMP WILD-TYPE     26     78     73     82     57
D1165V3, multiclass
[1] "Remove cluster labels:" "AAMP MUTATED"          
clus
  AAMP MUTATED AAMP WILD-TYPE 
             2            316 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-4183     TCGA-BR-4184 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-4187     TCGA-BR-4188     TCGA-BR-4191     TCGA-BR-4201 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-4253     TCGA-BR-4255     TCGA-BR-4256     TCGA-BR-4267 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-4279     TCGA-BR-4280     TCGA-BR-4292     TCGA-BR-4294 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-4357     TCGA-BR-4361     TCGA-BR-4362     TCGA-BR-4363 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-4366     TCGA-BR-4368     TCGA-BR-4369     TCGA-BR-4370 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-4371     TCGA-BR-6452     TCGA-BR-6453     TCGA-BR-6454 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457     TCGA-BR-6458 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6705     TCGA-BR-6706 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6707     TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7704     TCGA-BR-7715 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8060 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284     TCGA-BR-8285 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291     TCGA-BR-8295 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8297     TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8372     TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8484     TCGA-BR-8485 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589     TCGA-BR-8590 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8686     TCGA-BR-8687     TCGA-BR-8690 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A44T     TCGA-BR-A44U     TCGA-BR-A452     TCGA-BR-A453 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4CQ     TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4J2     TCGA-BR-A4J4     TCGA-BR-A4J5     TCGA-BR-A4J6 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4PE 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4PF     TCGA-BR-A4QI     TCGA-BR-A4QL     TCGA-BR-A4QM 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800     TCGA-CD-5801 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804     TCGA-CD-5813 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8527 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8528     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8533     TCGA-CD-8534     TCGA-CD-8535 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-A48A     TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300     TCGA-CG-4301 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4442     TCGA-CG-4443 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4474 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-4475     TCGA-CG-4476     TCGA-CG-4477     TCGA-CG-5716 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6525     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8573     TCGA-D7-8574 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-8575     TCGA-D7-8578     TCGA-D7-A4YT     TCGA-D7-A4YU 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY     TCGA-D7-A4Z0 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A6EV     TCGA-D7-A6EX     TCGA-D7-A6EY     TCGA-D7-A6EZ 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A6F0     TCGA-D7-A748     TCGA-EQ-8122     TCGA-EQ-A4SO 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-F1-A72C     TCGA-FP-7916     TCGA-FP-7998     TCGA-HF-7131 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HF-7132     TCGA-HF-7133     TCGA-HF-7134     TCGA-HF-7136 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HF-A5NB     TCGA-HJ-7597     TCGA-HU-8602     TCGA-HU-8608 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-8610     TCGA-HU-A4GF     TCGA-HU-A4GQ     TCGA-HU-A4GT 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4GU     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4HD 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-A6RI     TCGA-IN-A6RL     TCGA-IN-A6RN     TCGA-IN-A6RO 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-A6RR     TCGA-IN-A6RS     TCGA-IN-A7NR     TCGA-IN-A7NT 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-A7NU     TCGA-IN-AB1V     TCGA-IN-AB1X     TCGA-IP-7968 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-KB-A6F5     TCGA-KB-A93G     TCGA-MX-A5UG     TCGA-RD-A7BS 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-RD-A7BT     TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-SW-A7EA 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-SW-A7EB     TCGA-VQ-A8DL     TCGA-VQ-A8DT     TCGA-VQ-A8DU 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A8E2     TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A8PE     TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-AA64 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-AA69     TCGA-VQ-AA6A     TCGA-VQ-AA6B     TCGA-VQ-AA6F 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-AA6G     TCGA-VQ-AA6I     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AAMP MUTATED        1      1      0      0
  AAMP WILD-TYPE    126     50     71     69
D1165V4, multiclass
[1] "Remove cluster labels:" "AAMP MUTATED"          
clus
  AAMP MUTATED AAMP WILD-TYPE 
             2            316 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-4183     TCGA-BR-4184 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-4187     TCGA-BR-4188     TCGA-BR-4191     TCGA-BR-4201 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-4253     TCGA-BR-4255     TCGA-BR-4256     TCGA-BR-4267 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-4279     TCGA-BR-4280     TCGA-BR-4292     TCGA-BR-4294 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-4357     TCGA-BR-4361     TCGA-BR-4362     TCGA-BR-4363 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-4366     TCGA-BR-4368     TCGA-BR-4369     TCGA-BR-4370 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-4371     TCGA-BR-6452     TCGA-BR-6453     TCGA-BR-6454 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457     TCGA-BR-6458 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6564     TCGA-BR-6565     TCGA-BR-6705     TCGA-BR-6706 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6707     TCGA-BR-6709     TCGA-BR-6710     TCGA-BR-6801 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6802     TCGA-BR-6803     TCGA-BR-6852     TCGA-BR-7196 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7197     TCGA-BR-7703     TCGA-BR-7704     TCGA-BR-7715 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7716     TCGA-BR-7717     TCGA-BR-7722     TCGA-BR-7723 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8060 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8080     TCGA-BR-8081     TCGA-BR-8284     TCGA-BR-8285 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291     TCGA-BR-8295 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8297     TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8366     TCGA-BR-8367 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8368     TCGA-BR-8369     TCGA-BR-8370     TCGA-BR-8371 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8372     TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8384     TCGA-BR-8483     TCGA-BR-8484     TCGA-BR-8485 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8486     TCGA-BR-8588     TCGA-BR-8589     TCGA-BR-8590 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8591     TCGA-BR-8592     TCGA-BR-8676     TCGA-BR-8677 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8678     TCGA-BR-8679     TCGA-BR-8680     TCGA-BR-8682 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8683     TCGA-BR-8686     TCGA-BR-8687     TCGA-BR-8690 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A44T     TCGA-BR-A44U     TCGA-BR-A452     TCGA-BR-A453 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4CQ     TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4J2     TCGA-BR-A4J4     TCGA-BR-A4J5     TCGA-BR-A4J6 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4J7     TCGA-BR-A4J8     TCGA-BR-A4PD     TCGA-BR-A4PE 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4PF     TCGA-BR-A4QI     TCGA-BR-A4QL     TCGA-BR-A4QM 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800     TCGA-CD-5801 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804     TCGA-CD-5813 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8527 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8528     TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8532     TCGA-CD-8533     TCGA-CD-8534     TCGA-CD-8535 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8536     TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-A48A     TCGA-CD-A48C     TCGA-CD-A4MG     TCGA-CD-A4MH 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-A4MI     TCGA-CD-A4MJ     TCGA-CG-4300     TCGA-CG-4301 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-4304     TCGA-CG-4305     TCGA-CG-4306     TCGA-CG-4436 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-4437     TCGA-CG-4438     TCGA-CG-4442     TCGA-CG-4443 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-4444     TCGA-CG-4449     TCGA-CG-4455     TCGA-CG-4460 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-4465     TCGA-CG-4466     TCGA-CG-4469     TCGA-CG-4474 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-4475     TCGA-CG-4476     TCGA-CG-4477     TCGA-CG-5716 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5717     TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5721     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6525     TCGA-D7-6527     TCGA-D7-6528     TCGA-D7-6815 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820     TCGA-D7-6822 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8573     TCGA-D7-8574 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-8575     TCGA-D7-8578     TCGA-D7-A4YT     TCGA-D7-A4YU 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A4YV     TCGA-D7-A4YX     TCGA-D7-A4YY     TCGA-D7-A4Z0 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A6EV     TCGA-D7-A6EX     TCGA-D7-A6EY     TCGA-D7-A6EZ 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A6F0     TCGA-D7-A748     TCGA-EQ-8122     TCGA-EQ-A4SO 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-F1-6177     TCGA-F1-6874     TCGA-F1-6875     TCGA-F1-A448 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-F1-A72C     TCGA-FP-7916     TCGA-FP-7998     TCGA-HF-7131 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HF-7132     TCGA-HF-7133     TCGA-HF-7134     TCGA-HF-7136 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HF-A5NB     TCGA-HJ-7597     TCGA-HU-8602     TCGA-HU-8608 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-8610     TCGA-HU-A4GF     TCGA-HU-A4GQ     TCGA-HU-A4GT 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4GU     TCGA-HU-A4GX     TCGA-HU-A4GY     TCGA-HU-A4H2 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4H3     TCGA-HU-A4H4     TCGA-HU-A4H5     TCGA-HU-A4HD 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-7806     TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-A6RI     TCGA-IN-A6RL     TCGA-IN-A6RN     TCGA-IN-A6RO 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-A6RR     TCGA-IN-A6RS     TCGA-IN-A7NR     TCGA-IN-A7NT 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-A7NU     TCGA-IN-AB1V     TCGA-IN-AB1X     TCGA-IP-7968 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-KB-A6F5     TCGA-KB-A93G     TCGA-MX-A5UG     TCGA-RD-A7BS 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-RD-A7BT     TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-SW-A7EA 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-SW-A7EB     TCGA-VQ-A8DL     TCGA-VQ-A8DT     TCGA-VQ-A8DU 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A8E2     TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A8PE     TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-AA64 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-AA69     TCGA-VQ-AA6A     TCGA-VQ-AA6B     TCGA-VQ-AA6F 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-AA6G     TCGA-VQ-AA6I     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AAMP MUTATED        0      0      2      0      1
  AAMP WILD-TYPE     84     85     83     69     46
D1165V5, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            0             84
  CLUS_2            0             85
  CLUS_3            2             83
  CLUS_4            0             69
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AAMP MUTATED        1      0      0      2
  AAMP WILD-TYPE     94     74    121     78
D1165V6, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            1             94
  CLUS_2            0             74
  CLUS_3            0            121
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AAMP MUTATED        0      2      1      0      0      0
  AAMP WILD-TYPE     52     62     71    104     40     59
D1165V7, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            0             52
  CLUS_2            2             62
  CLUS_3            1             71
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AAMP MUTATED        3      0      0
  AAMP WILD-TYPE    214     75     99
D1165V8, multiclass
        clus
vv       AAMP MUTATED AAMP WILD-TYPE
  CLUS_1            3            214
  CLUS_2            0             75
  CLUS_3            0             99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AAMP MUTATED        1      0      1
  AAMP WILD-TYPE    120    108     71
D1165V9, multiclass
[1] "Remove cluster labels:" "AAMP MUTATED"          
clus
  AAMP MUTATED AAMP WILD-TYPE 
             2            299 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6709 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7704     TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8060 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8078     TCGA-BR-8080     TCGA-BR-8284 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291     TCGA-BR-8295 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8297     TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8368     TCGA-BR-8369 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8483     TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8588     TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8687 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A452     TCGA-BR-A453 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4CQ     TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4J5     TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4PD     TCGA-BR-A4QI     TCGA-BR-A4QL     TCGA-BR-A4QM 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800     TCGA-CD-5801 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804     TCGA-CD-5813 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8527 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8533     TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48C 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5716     TCGA-CG-5717 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8574 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-8575     TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A4YT     TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YY 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-D7-A6ET     TCGA-D7-A6EV     TCGA-D7-A6EX 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A6EY     TCGA-D7-A6EZ     TCGA-D7-A6F0     TCGA-D7-A6F2 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A747     TCGA-D7-A748     TCGA-D7-A74A     TCGA-D7-A74B 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE     TCGA-FP-A9TM 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7134     TCGA-HF-7136 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-8238     TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GJ 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GX 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H4     TCGA-HU-A4H5 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4H6     TCGA-HU-A4H8     TCGA-HU-A4HB     TCGA-IN-7806 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663     TCGA-IN-A6RI 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-A6RJ     TCGA-IN-A6RL     TCGA-IN-A6RN     TCGA-IN-A6RP 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-A7NR     TCGA-IN-A7NT     TCGA-IN-A7NU     TCGA-IN-AB1V 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-AB1X     TCGA-IP-7968     TCGA-KB-A6F5     TCGA-KB-A6F7 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-KB-A93J     TCGA-MX-A5UG     TCGA-MX-A5UJ     TCGA-MX-A663 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-MX-A666     TCGA-R5-A7O7     TCGA-R5-A7ZE     TCGA-R5-A7ZF 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-R5-A7ZI     TCGA-R5-A7ZR     TCGA-R5-A804     TCGA-R5-A805 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-RD-A7BS     TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-RD-A8N5 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-RD-A8N6     TCGA-RD-A8N9     TCGA-SW-A7EA     TCGA-SW-A7EB 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A8DL     TCGA-VQ-A8DU     TCGA-VQ-A8DV     TCGA-VQ-A8E2 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3     TCGA-VQ-A8PE 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ     TCGA-VQ-A91Q 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-A94T 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-AA64     TCGA-VQ-AA68     TCGA-VQ-AA69     TCGA-VQ-AA6A 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-AA6B     TCGA-VQ-AA6F     TCGA-VQ-AA6G     TCGA-VQ-AA6I 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-AA6J     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AAMP MUTATED        1      0      1      0      0
  AAMP WILD-TYPE     87     66     44     55     47
D1165V10, multiclass
[1] "Remove cluster labels:" "AAMP MUTATED"          
clus
  AAMP MUTATED AAMP WILD-TYPE 
             2            299 
    TCGA-B7-5816     TCGA-B7-5818     TCGA-B7-A5TI     TCGA-B7-A5TJ 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-B7-A5TK     TCGA-B7-A5TN     TCGA-BR-6452     TCGA-BR-6453 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6454     TCGA-BR-6455     TCGA-BR-6456     TCGA-BR-6457 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6458     TCGA-BR-6563     TCGA-BR-6564     TCGA-BR-6565 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6705     TCGA-BR-6706     TCGA-BR-6707     TCGA-BR-6709 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6710     TCGA-BR-6801     TCGA-BR-6802     TCGA-BR-6803 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-6852     TCGA-BR-7196     TCGA-BR-7197     TCGA-BR-7703 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7704     TCGA-BR-7715     TCGA-BR-7717     TCGA-BR-7723 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7851     TCGA-BR-7901     TCGA-BR-7957     TCGA-BR-7958 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-7959     TCGA-BR-8058     TCGA-BR-8059     TCGA-BR-8060 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8077     TCGA-BR-8078     TCGA-BR-8080     TCGA-BR-8284 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8286     TCGA-BR-8289     TCGA-BR-8291     TCGA-BR-8295 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8297     TCGA-BR-8360     TCGA-BR-8361     TCGA-BR-8363 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8364     TCGA-BR-8365     TCGA-BR-8368     TCGA-BR-8369 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8370     TCGA-BR-8371     TCGA-BR-8372     TCGA-BR-8373 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8380     TCGA-BR-8381     TCGA-BR-8382     TCGA-BR-8384 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8483     TCGA-BR-8485     TCGA-BR-8486     TCGA-BR-8487 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8588     TCGA-BR-8590     TCGA-BR-8591     TCGA-BR-8592 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8676     TCGA-BR-8677     TCGA-BR-8678     TCGA-BR-8679 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8680     TCGA-BR-8682     TCGA-BR-8683     TCGA-BR-8687 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-8690     TCGA-BR-A44T     TCGA-BR-A452     TCGA-BR-A453 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4CQ     TCGA-BR-A4CR     TCGA-BR-A4CS     TCGA-BR-A4IU 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4IV     TCGA-BR-A4IY     TCGA-BR-A4IZ     TCGA-BR-A4J1 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4J5     TCGA-BR-A4J6     TCGA-BR-A4J7     TCGA-BR-A4J8 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-BR-A4PD     TCGA-BR-A4QI     TCGA-BR-A4QL     TCGA-BR-A4QM 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-5798     TCGA-CD-5799     TCGA-CD-5800     TCGA-CD-5801 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-5802     TCGA-CD-5803     TCGA-CD-5804     TCGA-CD-5813 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8524     TCGA-CD-8525     TCGA-CD-8526     TCGA-CD-8527 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8529     TCGA-CD-8530     TCGA-CD-8531     TCGA-CD-8532 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-8533     TCGA-CD-8534     TCGA-CD-8535     TCGA-CD-8536 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-A486     TCGA-CD-A487     TCGA-CD-A489     TCGA-CD-A48C 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CD-A4MG     TCGA-CD-A4MH     TCGA-CD-A4MI     TCGA-CG-4437 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-4441     TCGA-CG-4449     TCGA-CG-5716     TCGA-CG-5717 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5718     TCGA-CG-5719     TCGA-CG-5720     TCGA-CG-5721 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5722     TCGA-CG-5723     TCGA-CG-5724     TCGA-CG-5725 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5726     TCGA-CG-5727     TCGA-CG-5728     TCGA-CG-5730 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-CG-5732     TCGA-CG-5733     TCGA-CG-5734     TCGA-D7-5577 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-5578     TCGA-D7-5579     TCGA-D7-6518     TCGA-D7-6519 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6520     TCGA-D7-6521     TCGA-D7-6522     TCGA-D7-6524 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6525     TCGA-D7-6526     TCGA-D7-6527     TCGA-D7-6528 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6815     TCGA-D7-6817     TCGA-D7-6818     TCGA-D7-6820 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-6822     TCGA-D7-8570     TCGA-D7-8572     TCGA-D7-8574 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-8575     TCGA-D7-8576     TCGA-D7-8578     TCGA-D7-8579 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A4YT     TCGA-D7-A4YU     TCGA-D7-A4YV     TCGA-D7-A4YY 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A4Z0     TCGA-D7-A6ET     TCGA-D7-A6EV     TCGA-D7-A6EX 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A6EY     TCGA-D7-A6EZ     TCGA-D7-A6F0     TCGA-D7-A6F2 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-D7-A747     TCGA-D7-A748     TCGA-D7-A74A     TCGA-D7-A74B 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-EQ-5647     TCGA-EQ-8122     TCGA-F1-6177     TCGA-F1-6874 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-F1-6875     TCGA-F1-A448     TCGA-FP-7735     TCGA-FP-7829 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FP-7998     TCGA-FP-8099     TCGA-FP-8209     TCGA-FP-8210 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-FP-8211     TCGA-FP-8631     TCGA-FP-A4BE     TCGA-FP-A9TM 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HF-7131     TCGA-HF-7132     TCGA-HF-7134     TCGA-HF-7136 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-8238     TCGA-HU-8243     TCGA-HU-8602     TCGA-HU-8604 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-8608     TCGA-HU-A4G3     TCGA-HU-A4G8     TCGA-HU-A4GC 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4GD     TCGA-HU-A4GF     TCGA-HU-A4GH     TCGA-HU-A4GJ 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4GN     TCGA-HU-A4GQ     TCGA-HU-A4GT     TCGA-HU-A4GX 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4GY     TCGA-HU-A4H2     TCGA-HU-A4H4     TCGA-HU-A4H5 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-HU-A4H6     TCGA-HU-A4H8     TCGA-HU-A4HB     TCGA-IN-7806 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-7808     TCGA-IN-8462     TCGA-IN-8663     TCGA-IN-A6RI 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-A6RJ     TCGA-IN-A6RL     TCGA-IN-A6RN     TCGA-IN-A6RP 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-A7NR     TCGA-IN-A7NT     TCGA-IN-A7NU     TCGA-IN-AB1V 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-IN-AB1X     TCGA-IP-7968     TCGA-KB-A6F5     TCGA-KB-A6F7 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-KB-A93J     TCGA-MX-A5UG     TCGA-MX-A5UJ     TCGA-MX-A663 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-MX-A666     TCGA-R5-A7O7     TCGA-R5-A7ZE     TCGA-R5-A7ZF 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-R5-A7ZI     TCGA-R5-A7ZR     TCGA-R5-A804     TCGA-R5-A805 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-RD-A7BS     TCGA-RD-A7BW     TCGA-RD-A7C1     TCGA-RD-A8MV 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-RD-A8MW     TCGA-RD-A8N0     TCGA-RD-A8N1     TCGA-RD-A8N5 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-RD-A8N6     TCGA-RD-A8N9     TCGA-SW-A7EA     TCGA-SW-A7EB 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A8DL     TCGA-VQ-A8DU     TCGA-VQ-A8DV     TCGA-VQ-A8E2 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A8E7     TCGA-VQ-A8P2     TCGA-VQ-A8P3     TCGA-VQ-A8PE 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A8PK     TCGA-VQ-A8PM     TCGA-VQ-A8PQ     TCGA-VQ-A91Q 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-A91U     TCGA-VQ-A91V     TCGA-VQ-A92D     TCGA-VQ-A94T 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-AA64     TCGA-VQ-AA68     TCGA-VQ-AA69     TCGA-VQ-AA6A 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-AA6B     TCGA-VQ-AA6F     TCGA-VQ-AA6G     TCGA-VQ-AA6I 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 
    TCGA-VQ-AA6J     TCGA-VQ-AA6K     TCGA-ZA-A8F6 
"AAMP WILD-TYPE" "AAMP WILD-TYPE" "AAMP WILD-TYPE" 

Clustering(1166) Variable = SYBU MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYBU MUTATED        2     11      1      0
  SYBU WILD-TYPE    202    126     46      3
D1166V1, multiclass
        clus
vv       SYBU MUTATED SYBU WILD-TYPE
  CLUS_1            2            202
  CLUS_2           11            126
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYBU MUTATED        2      8      1      1      2
  SYBU WILD-TYPE     37     88     43     87     78
D1166V2, multiclass
        clus
vv       SYBU MUTATED SYBU WILD-TYPE
  CLUS_1            2             37
  CLUS_2            8             88
  CLUS_3            1             43
  CLUS_4            1             87
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYBU MUTATED        0      5      4      1      3
  SYBU WILD-TYPE     26     74     69     81     55
D1166V3, multiclass
        clus
vv       SYBU MUTATED SYBU WILD-TYPE
  CLUS_1            0             26
  CLUS_2            5             74
  CLUS_3            4             69
  CLUS_4            1             81
  CLUS_5            3             55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYBU MUTATED        3      8      2      0
  SYBU WILD-TYPE    124     43     69     69
D1166V4, multiclass
        clus
vv       SYBU MUTATED SYBU WILD-TYPE
  CLUS_1            3            124
  CLUS_2            8             43
  CLUS_3            2             69
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYBU MUTATED        0      2     11      1      1
  SYBU WILD-TYPE     84     83     74     68     46
D1166V5, multiclass
        clus
vv       SYBU MUTATED SYBU WILD-TYPE
  CLUS_1            0             84
  CLUS_2            2             83
  CLUS_3           11             74
  CLUS_4            1             68
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SYBU MUTATED        3      2      3      7
  SYBU WILD-TYPE     92     72    118     73
D1166V6, multiclass
        clus
vv       SYBU MUTATED SYBU WILD-TYPE
  CLUS_1            3             92
  CLUS_2            2             72
  CLUS_3            3            118
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SYBU MUTATED        3      5      4      1      2      0
  SYBU WILD-TYPE     49     59     68    103     38     59
D1166V7, multiclass
        clus
vv       SYBU MUTATED SYBU WILD-TYPE
  CLUS_1            3             49
  CLUS_2            5             59
  CLUS_3            4             68
  CLUS_4            1            103
  CLUS_5            2             38
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYBU MUTATED       11      2      2
  SYBU WILD-TYPE    206     73     97
D1166V8, multiclass
        clus
vv       SYBU MUTATED SYBU WILD-TYPE
  CLUS_1           11            206
  CLUS_2            2             73
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SYBU MUTATED        4      3      6
  SYBU WILD-TYPE    117    105     66
D1166V9, multiclass
        clus
vv       SYBU MUTATED SYBU WILD-TYPE
  CLUS_1            4            117
  CLUS_2            3            105
  CLUS_3            6             66
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SYBU MUTATED        3      1      4      0      5
  SYBU WILD-TYPE     85     65     41     55     42
D1166V10, multiclass
        clus
vv       SYBU MUTATED SYBU WILD-TYPE
  CLUS_1            3             85
  CLUS_2            1             65
  CLUS_3            4             41
  CLUS_4            0             55
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1167) Variable = CPT2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPT2 MUTATED        0      6      0      0
  CPT2 WILD-TYPE    204    131     47      3
D1167V1, multiclass
        clus
vv       CPT2 MUTATED CPT2 WILD-TYPE
  CLUS_1            0            204
  CLUS_2            6            131
  CLUS_3            0             47
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPT2 MUTATED        0      3      1      0      1
  CPT2 WILD-TYPE     39     93     43     88     79
D1167V2, multiclass
        clus
vv       CPT2 MUTATED CPT2 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            3             93
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPT2 MUTATED        2      0      2      0      0
  CPT2 WILD-TYPE     24     79     71     82     58
D1167V3, multiclass
        clus
vv       CPT2 MUTATED CPT2 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            0             79
  CLUS_3            2             71
  CLUS_4            0             82
  CLUS_5            0             58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPT2 MUTATED        2      2      0      0
  CPT2 WILD-TYPE    125     49     71     69
D1167V4, multiclass
        clus
vv       CPT2 MUTATED CPT2 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            2             49
  CLUS_3            0             71
  CLUS_4            0             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPT2 MUTATED        1      0      4      1      0
  CPT2 WILD-TYPE     83     85     81     68     47
D1167V5, multiclass
        clus
vv       CPT2 MUTATED CPT2 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            0             85
  CLUS_3            4             81
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CPT2 MUTATED        3      0      1      2
  CPT2 WILD-TYPE     92     74    120     78
D1167V6, multiclass
        clus
vv       CPT2 MUTATED CPT2 WILD-TYPE
  CLUS_1            3             92
  CLUS_2            0             74
  CLUS_3            1            120
  CLUS_4            2             78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CPT2 MUTATED        1      2      2      0      0      1
  CPT2 WILD-TYPE     51     62     70    104     40     58
D1167V7, multiclass
        clus
vv       CPT2 MUTATED CPT2 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            2             62
  CLUS_3            2             70
  CLUS_4            0            104
  CLUS_5            0             40
  CLUS_6            1             58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPT2 MUTATED        4      0      2
  CPT2 WILD-TYPE    213     75     97
D1167V8, multiclass
        clus
vv       CPT2 MUTATED CPT2 WILD-TYPE
  CLUS_1            4            213
  CLUS_2            0             75
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  CPT2 MUTATED        0      0      3
  CPT2 WILD-TYPE    121    108     69
D1167V9, multiclass
        clus
vv       CPT2 MUTATED CPT2 WILD-TYPE
  CLUS_1            0            121
  CLUS_2            0            108
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CPT2 MUTATED        0      0      2      0      1
  CPT2 WILD-TYPE     88     66     43     55     46
D1167V10, multiclass
        clus
vv       CPT2 MUTATED CPT2 WILD-TYPE
  CLUS_1            0             88
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1168) Variable = SCNN1D MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCNN1D MUTATED        0      8      2      0
  SCNN1D WILD-TYPE    204    129     45      3
D1168V1, multiclass
        clus
vv       SCNN1D MUTATED SCNN1D WILD-TYPE
  CLUS_1              0              204
  CLUS_2              8              129
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCNN1D MUTATED        2      5      1      1      1
  SCNN1D WILD-TYPE     37     91     43     87     79
D1168V2, multiclass
        clus
vv       SCNN1D MUTATED SCNN1D WILD-TYPE
  CLUS_1              2               37
  CLUS_2              5               91
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCNN1D MUTATED        1      2      3      1      1
  SCNN1D WILD-TYPE     25     77     70     81     57
D1168V3, multiclass
        clus
vv       SCNN1D MUTATED SCNN1D WILD-TYPE
  CLUS_1              1               25
  CLUS_2              2               77
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCNN1D MUTATED        4      1      2      1
  SCNN1D WILD-TYPE    123     50     69     68
D1168V4, multiclass
        clus
vv       SCNN1D MUTATED SCNN1D WILD-TYPE
  CLUS_1              4              123
  CLUS_2              1               50
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCNN1D MUTATED        0      1      3      2      2
  SCNN1D WILD-TYPE     84     84     82     67     45
D1168V5, multiclass
        clus
vv       SCNN1D MUTATED SCNN1D WILD-TYPE
  CLUS_1              0               84
  CLUS_2              1               84
  CLUS_3              3               82
  CLUS_4              2               67
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SCNN1D MUTATED        2      2      0      4
  SCNN1D WILD-TYPE     93     72    121     76
D1168V6, multiclass
        clus
vv       SCNN1D MUTATED SCNN1D WILD-TYPE
  CLUS_1              2               93
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              4               76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SCNN1D MUTATED        2      3      3      2      0      0
  SCNN1D WILD-TYPE     50     61     69    102     40     59
D1168V7, multiclass
        clus
vv       SCNN1D MUTATED SCNN1D WILD-TYPE
  CLUS_1              2               50
  CLUS_2              3               61
  CLUS_3              3               69
  CLUS_4              2              102
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCNN1D MUTATED        7      2      1
  SCNN1D WILD-TYPE    210     73     98
D1168V8, multiclass
        clus
vv       SCNN1D MUTATED SCNN1D WILD-TYPE
  CLUS_1              7              210
  CLUS_2              2               73
  CLUS_3              1               98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SCNN1D MUTATED        4      2      4
  SCNN1D WILD-TYPE    117    106     68
D1168V9, multiclass
        clus
vv       SCNN1D MUTATED SCNN1D WILD-TYPE
  CLUS_1              4              117
  CLUS_2              2              106
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SCNN1D MUTATED        4      1      2      0      3
  SCNN1D WILD-TYPE     84     65     43     55     44
D1168V10, multiclass
        clus
vv       SCNN1D MUTATED SCNN1D WILD-TYPE
  CLUS_1              4               84
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              3               44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1169) Variable = OLFM3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OLFM3 MUTATED        3      4      1      0
  OLFM3 WILD-TYPE    201    133     46      3
D1169V1, multiclass
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  CLUS_1             3             201
  CLUS_2             4             133
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OLFM3 MUTATED        0      7      0      0      1
  OLFM3 WILD-TYPE     39     89     44     88     79
D1169V2, multiclass
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             7              89
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OLFM3 MUTATED        0      2      4      0      1
  OLFM3 WILD-TYPE     26     77     69     82     57
D1169V3, multiclass
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             4              69
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OLFM3 MUTATED        2      4      1      0
  OLFM3 WILD-TYPE    125     47     70     69
D1169V4, multiclass
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             4              47
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OLFM3 MUTATED        0      2      5      0      1
  OLFM3 WILD-TYPE     84     83     80     69     46
D1169V5, multiclass
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             5              80
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OLFM3 MUTATED        1      2      2      3
  OLFM3 WILD-TYPE     94     72    119     77
D1169V6, multiclass
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             2              72
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OLFM3 MUTATED        3      1      2      2      0      0
  OLFM3 WILD-TYPE     49     63     70    102     40     59
D1169V7, multiclass
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             1              63
  CLUS_3             2              70
  CLUS_4             2             102
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OLFM3 MUTATED        6      2      0
  OLFM3 WILD-TYPE    211     73     99
D1169V8, multiclass
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             2              73
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OLFM3 MUTATED        3      2      3
  OLFM3 WILD-TYPE    118    106     69
D1169V9, multiclass
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             2             106
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OLFM3 MUTATED        3      1      2      0      2
  OLFM3 WILD-TYPE     85     65     43     55     45
D1169V10, multiclass
        clus
vv       OLFM3 MUTATED OLFM3 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1170) Variable = LRRC43 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC43 MUTATED        2      9      0      0
  LRRC43 WILD-TYPE    202    128     47      3
D1170V1, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              2              202
  CLUS_2              9              128
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC43 MUTATED        0      7      1      1      1
  LRRC43 WILD-TYPE     39     89     43     87     79
D1170V2, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              7               89
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC43 MUTATED        0      3      3      1      2
  LRRC43 WILD-TYPE     26     76     70     81     56
D1170V3, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              3               70
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC43 MUTATED        2      5      1      1
  LRRC43 WILD-TYPE    125     46     70     68
D1170V4, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              2              125
  CLUS_2              5               46
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC43 MUTATED        1      0      7      3      1
  LRRC43 WILD-TYPE     83     85     78     66     46
D1170V5, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              0               85
  CLUS_3              7               78
  CLUS_4              3               66
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC43 MUTATED        4      2      1      5
  LRRC43 WILD-TYPE     91     72    120     75
D1170V6, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              4               91
  CLUS_2              2               72
  CLUS_3              1              120
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRRC43 MUTATED        5      4      1      1      0      1
  LRRC43 WILD-TYPE     47     60     71    103     40     58
D1170V7, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              5               47
  CLUS_2              4               60
  CLUS_3              1               71
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC43 MUTATED       10      0      2
  LRRC43 WILD-TYPE    207     75     97
D1170V8, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1             10              207
  CLUS_2              0               75
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  LRRC43 MUTATED        5      2      3
  LRRC43 WILD-TYPE    116    106     69
D1170V9, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              5              116
  CLUS_2              2              106
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC43 MUTATED        2      0      2      2      4
  LRRC43 WILD-TYPE     86     66     43     53     43
D1170V10, multiclass
        clus
vv       LRRC43 MUTATED LRRC43 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              2               53
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1171) Variable = TMC2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMC2 MUTATED        6     10      1      0
  TMC2 WILD-TYPE    198    127     46      3
D1171V1, multiclass
        clus
vv       TMC2 MUTATED TMC2 WILD-TYPE
  CLUS_1            6            198
  CLUS_2           10            127
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMC2 MUTATED        2      6      0      3      2
  TMC2 WILD-TYPE     37     90     44     85     78
D1171V2, multiclass
        clus
vv       TMC2 MUTATED TMC2 WILD-TYPE
  CLUS_1            2             37
  CLUS_2            6             90
  CLUS_3            0             44
  CLUS_4            3             85
  CLUS_5            2             78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMC2 MUTATED        2      3      6      1      2
  TMC2 WILD-TYPE     24     76     67     81     56
D1171V3, multiclass
        clus
vv       TMC2 MUTATED TMC2 WILD-TYPE
  CLUS_1            2             24
  CLUS_2            3             76
  CLUS_3            6             67
  CLUS_4            1             81
  CLUS_5            2             56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMC2 MUTATED        4      8      1      1
  TMC2 WILD-TYPE    123     43     70     68
D1171V4, multiclass
        clus
vv       TMC2 MUTATED TMC2 WILD-TYPE
  CLUS_1            4            123
  CLUS_2            8             43
  CLUS_3            1             70
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMC2 MUTATED        2      1      7      3      2
  TMC2 WILD-TYPE     82     84     78     66     45
D1171V5, multiclass
        clus
vv       TMC2 MUTATED TMC2 WILD-TYPE
  CLUS_1            2             82
  CLUS_2            1             84
  CLUS_3            7             78
  CLUS_4            3             66
  CLUS_5            2             45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMC2 MUTATED        4      1      3      7
  TMC2 WILD-TYPE     91     73    118     73
D1171V6, multiclass
        clus
vv       TMC2 MUTATED TMC2 WILD-TYPE
  CLUS_1            4             91
  CLUS_2            1             73
  CLUS_3            3            118
  CLUS_4            7             73
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TMC2 MUTATED        4      4      5      1      1      2
  TMC2 WILD-TYPE     48     60     67    103     39     57
D1171V7, multiclass
        clus
vv       TMC2 MUTATED TMC2 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            4             60
  CLUS_3            5             67
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC2 MUTATED       12      2      3
  TMC2 WILD-TYPE    205     73     96
D1171V8, multiclass
        clus
vv       TMC2 MUTATED TMC2 WILD-TYPE
  CLUS_1           12            205
  CLUS_2            2             73
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TMC2 MUTATED        8      2      2
  TMC2 WILD-TYPE    113    106     70
D1171V9, multiclass
        clus
vv       TMC2 MUTATED TMC2 WILD-TYPE
  CLUS_1            8            113
  CLUS_2            2            106
  CLUS_3            2             70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMC2 MUTATED        5      1      1      1      4
  TMC2 WILD-TYPE     83     65     44     54     43
D1171V10, multiclass
        clus
vv       TMC2 MUTATED TMC2 WILD-TYPE
  CLUS_1            5             83
  CLUS_2            1             65
  CLUS_3            1             44
  CLUS_4            1             54
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1172) Variable = USP30 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP30 MUTATED        1      7      0      0
  USP30 WILD-TYPE    203    130     47      3
D1172V1, multiclass
        clus
vv       USP30 MUTATED USP30 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP30 MUTATED        0      6      0      0      1
  USP30 WILD-TYPE     39     90     44     88     79
D1172V2, multiclass
        clus
vv       USP30 MUTATED USP30 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             6              90
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP30 MUTATED        1      1      3      0      1
  USP30 WILD-TYPE     25     78     70     82     57
D1172V3, multiclass
        clus
vv       USP30 MUTATED USP30 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP30 MUTATED        2      3      1      0
  USP30 WILD-TYPE    125     48     70     69
D1172V4, multiclass
        clus
vv       USP30 MUTATED USP30 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             3              48
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP30 MUTATED        1      0      5      2      1
  USP30 WILD-TYPE     83     85     80     67     46
D1172V5, multiclass
        clus
vv       USP30 MUTATED USP30 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             5              80
  CLUS_4             2              67
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  USP30 MUTATED        4      0      2      3
  USP30 WILD-TYPE     91     74    119     77
D1172V6, multiclass
        clus
vv       USP30 MUTATED USP30 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             0              74
  CLUS_3             2             119
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  USP30 MUTATED        4      4      0      1      0      0
  USP30 WILD-TYPE     48     60     72    103     40     59
D1172V7, multiclass
        clus
vv       USP30 MUTATED USP30 WILD-TYPE
  CLUS_1             4              48
  CLUS_2             4              60
  CLUS_3             0              72
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP30 MUTATED        8      0      1
  USP30 WILD-TYPE    209     75     98
D1172V8, multiclass
        clus
vv       USP30 MUTATED USP30 WILD-TYPE
  CLUS_1             8             209
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  USP30 MUTATED        4      1      2
  USP30 WILD-TYPE    117    107     70
D1172V9, multiclass
        clus
vv       USP30 MUTATED USP30 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  USP30 MUTATED        2      0      2      0      3
  USP30 WILD-TYPE     86     66     43     55     44
D1172V10, multiclass
        clus
vv       USP30 MUTATED USP30 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             0              55
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1173) Variable = TRIP6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP6 MUTATED        1      7      0      0
  TRIP6 WILD-TYPE    203    130     47      3
D1173V1, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             7             130
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP6 MUTATED        0      3      0      1      2
  TRIP6 WILD-TYPE     39     93     44     87     78
D1173V2, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP6 MUTATED        0      3      2      1      0
  TRIP6 WILD-TYPE     26     76     71     81     58
D1173V3, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             2              71
  CLUS_4             1              81
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP6 MUTATED        0      3      2      1
  TRIP6 WILD-TYPE    127     48     69     68
D1173V4, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             3              48
  CLUS_3             2              69
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP6 MUTATED        0      0      5      1      2
  TRIP6 WILD-TYPE     84     85     80     68     45
D1173V5, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             0              85
  CLUS_3             5              80
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TRIP6 MUTATED        3      2      1      2
  TRIP6 WILD-TYPE     92     72    120     78
D1173V6, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TRIP6 MUTATED        2      4      1      1      0      0
  TRIP6 WILD-TYPE     50     60     71    103     40     59
D1173V7, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             2              50
  CLUS_2             4              60
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRIP6 MUTATED        6      1      1
  TRIP6 WILD-TYPE    211     74     98
D1173V8, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             1              74
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TRIP6 MUTATED        3      1      2
  TRIP6 WILD-TYPE    118    107     70
D1173V9, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             3             118
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TRIP6 MUTATED        0      0      2      1      3
  TRIP6 WILD-TYPE     88     66     43     54     44
D1173V10, multiclass
        clus
vv       TRIP6 MUTATED TRIP6 WILD-TYPE
  CLUS_1             0              88
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1174) Variable = PBX2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBX2 MUTATED        3      6      1      0
  PBX2 WILD-TYPE    201    131     46      3
D1174V1, multiclass
        clus
vv       PBX2 MUTATED PBX2 WILD-TYPE
  CLUS_1            3            201
  CLUS_2            6            131
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PBX2 MUTATED        0      6      1      0      1
  PBX2 WILD-TYPE     39     90     43     88     79
D1174V2, multiclass
        clus
vv       PBX2 MUTATED PBX2 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            6             90
  CLUS_3            1             43
  CLUS_4            0             88
  CLUS_5            1             79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PBX2 MUTATED        0      0      3      3      4
  PBX2 WILD-TYPE     26     79     70     79     54
D1174V3, multiclass
        clus
vv       PBX2 MUTATED PBX2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            0             79
  CLUS_3            3             70
  CLUS_4            3             79
  CLUS_5            4             54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBX2 MUTATED        4      4      0      2
  PBX2 WILD-TYPE    123     47     71     67
D1174V4, multiclass
        clus
vv       PBX2 MUTATED PBX2 WILD-TYPE
  CLUS_1            4            123
  CLUS_2            4             47
  CLUS_3            0             71
  CLUS_4            2             67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PBX2 MUTATED        1      5      3      1      0
  PBX2 WILD-TYPE     83     80     82     68     47
D1174V5, multiclass
        clus
vv       PBX2 MUTATED PBX2 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            5             80
  CLUS_3            3             82
  CLUS_4            1             68
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PBX2 MUTATED        2      3      2      3
  PBX2 WILD-TYPE     93     71    119     77
D1174V6, multiclass
        clus
vv       PBX2 MUTATED PBX2 WILD-TYPE
  CLUS_1            2             93
  CLUS_2            3             71
  CLUS_3            2            119
  CLUS_4            3             77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PBX2 MUTATED        1      5      2      1      1      0
  PBX2 WILD-TYPE     51     59     70    103     39     59
D1174V7, multiclass
        clus
vv       PBX2 MUTATED PBX2 WILD-TYPE
  CLUS_1            1             51
  CLUS_2            5             59
  CLUS_3            2             70
  CLUS_4            1            103
  CLUS_5            1             39
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PBX2 MUTATED        7      1      2
  PBX2 WILD-TYPE    210     74     97
D1174V8, multiclass
        clus
vv       PBX2 MUTATED PBX2 WILD-TYPE
  CLUS_1            7            210
  CLUS_2            1             74
  CLUS_3            2             97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PBX2 MUTATED        1      2      4
  PBX2 WILD-TYPE    120    106     68
D1174V9, multiclass
        clus
vv       PBX2 MUTATED PBX2 WILD-TYPE
  CLUS_1            1            120
  CLUS_2            2            106
  CLUS_3            4             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PBX2 MUTATED        2      2      2      0      1
  PBX2 WILD-TYPE     86     64     43     55     46
D1174V10, multiclass
        clus
vv       PBX2 MUTATED PBX2 WILD-TYPE
  CLUS_1            2             86
  CLUS_2            2             64
  CLUS_3            2             43
  CLUS_4            0             55
  CLUS_5            1             46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1175) Variable = TNNT3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNNT3 MUTATED        2      5      0      0
  TNNT3 WILD-TYPE    202    132     47      3
D1175V1, multiclass
        clus
vv       TNNT3 MUTATED TNNT3 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             5             132
  CLUS_3             0              47
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNNT3 MUTATED        0      3      1      2      1
  TNNT3 WILD-TYPE     39     93     43     86     79
D1175V2, multiclass
        clus
vv       TNNT3 MUTATED TNNT3 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             2              86
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNNT3 MUTATED        1      1      2      0      0
  TNNT3 WILD-TYPE     25     78     71     82     58
D1175V3, multiclass
        clus
vv       TNNT3 MUTATED TNNT3 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             1              78
  CLUS_3             2              71
  CLUS_4             0              82
  CLUS_5             0              58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNNT3 MUTATED        2      1      1      0
  TNNT3 WILD-TYPE    125     50     70     69
D1175V4, multiclass
        clus
vv       TNNT3 MUTATED TNNT3 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             1              50
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNNT3 MUTATED        1      1      4      0      1
  TNNT3 WILD-TYPE     83     84     81     69     46
D1175V5, multiclass
        clus
vv       TNNT3 MUTATED TNNT3 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             4              81
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNNT3 MUTATED        1      0      3      3
  TNNT3 WILD-TYPE     94     74    118     77
D1175V6, multiclass
        clus
vv       TNNT3 MUTATED TNNT3 WILD-TYPE
  CLUS_1             1              94
  CLUS_2             0              74
  CLUS_3             3             118
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TNNT3 MUTATED        3      1      0      0      2      1
  TNNT3 WILD-TYPE     49     63     72    104     38     58
D1175V7, multiclass
        clus
vv       TNNT3 MUTATED TNNT3 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             1              63
  CLUS_3             0              72
  CLUS_4             0             104
  CLUS_5             2              38
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNNT3 MUTATED        5      0      2
  TNNT3 WILD-TYPE    212     75     97
D1175V8, multiclass
        clus
vv       TNNT3 MUTATED TNNT3 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             0              75
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TNNT3 MUTATED        5      1      1
  TNNT3 WILD-TYPE    116    107     71
D1175V9, multiclass
        clus
vv       TNNT3 MUTATED TNNT3 WILD-TYPE
  CLUS_1             5             116
  CLUS_2             1             107
  CLUS_3             1              71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNNT3 MUTATED        2      0      1      1      3
  TNNT3 WILD-TYPE     86     66     44     54     44
D1175V10, multiclass
        clus
vv       TNNT3 MUTATED TNNT3 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             1              54
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1176) Variable = OSTALPHA MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSTALPHA MUTATED        0      4      0      0
  OSTALPHA WILD-TYPE    204    133     47      3
D1176V1, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                0                204
  CLUS_2                4                133
  CLUS_3                0                 47
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSTALPHA MUTATED        1      2      1      0      0
  OSTALPHA WILD-TYPE     38     94     43     88     80
D1176V2, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                1                 38
  CLUS_2                2                 94
  CLUS_3                1                 43
  CLUS_4                0                 88
  CLUS_5                0                 80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSTALPHA MUTATED        0      1      1      0      1
  OSTALPHA WILD-TYPE     26     78     72     82     57
D1176V3, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                1                 78
  CLUS_3                1                 72
  CLUS_4                0                 82
  CLUS_5                1                 57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSTALPHA MUTATED        0      2      1      0
  OSTALPHA WILD-TYPE    127     49     70     69
D1176V4, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                0                127
  CLUS_2                2                 49
  CLUS_3                1                 70
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSTALPHA MUTATED        0      1      3      0      0
  OSTALPHA WILD-TYPE     84     84     82     69     47
D1176V5, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                1                 84
  CLUS_3                3                 82
  CLUS_4                0                 69
  CLUS_5                0                 47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OSTALPHA MUTATED        0      0      0      4
  OSTALPHA WILD-TYPE     95     74    121     76
D1176V6, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                0                 95
  CLUS_2                0                 74
  CLUS_3                0                121
  CLUS_4                4                 76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OSTALPHA MUTATED        3      0      0      1      0      0
  OSTALPHA WILD-TYPE     49     64     72    103     40     59
D1176V7, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                3                 49
  CLUS_2                0                 64
  CLUS_3                0                 72
  CLUS_4                1                103
  CLUS_5                0                 40
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  OSTALPHA MUTATED        3      0      1
  OSTALPHA WILD-TYPE    214     75     98
D1176V8, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                3                214
  CLUS_2                0                 75
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  OSTALPHA MUTATED        2      1      0
  OSTALPHA WILD-TYPE    119    107     72
D1176V9, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                2                119
  CLUS_2                1                107
  CLUS_3                0                 72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OSTALPHA MUTATED        2      0      0      0      1
  OSTALPHA WILD-TYPE     86     66     45     55     46
D1176V10, multiclass
        clus
vv       OSTALPHA MUTATED OSTALPHA WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                0                 66
  CLUS_3                0                 45
  CLUS_4                0                 55
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1177) Variable = OXCT2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXCT2 MUTATED        1      3      0      1
  OXCT2 WILD-TYPE    203    134     47      2
D1177V1, multiclass
        clus
vv       OXCT2 MUTATED OXCT2 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             3             134
  CLUS_3             0              47
  CLUS_4             1               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OXCT2 MUTATED        1      3      1      0      0
  OXCT2 WILD-TYPE     38     93     43     88     80
D1177V2, multiclass
        clus
vv       OXCT2 MUTATED OXCT2 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             3              93
  CLUS_3             1              43
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OXCT2 MUTATED        0      0      0      2      1
  OXCT2 WILD-TYPE     26     79     73     80     57
D1177V3, multiclass
        clus
vv       OXCT2 MUTATED OXCT2 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             0              79
  CLUS_3             0              73
  CLUS_4             2              80
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXCT2 MUTATED        0      0      0      3
  OXCT2 WILD-TYPE    127     51     71     66
D1177V4, multiclass
        clus
vv       OXCT2 MUTATED OXCT2 WILD-TYPE
  CLUS_1             0             127
  CLUS_2             0              51
  CLUS_3             0              71
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OXCT2 MUTATED        0      1      3      0      1
  OXCT2 WILD-TYPE     84     84     82     69     46
D1177V5, multiclass
        clus
vv       OXCT2 MUTATED OXCT2 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             3              82
  CLUS_4             0              69
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  OXCT2 MUTATED        0      1      1      3
  OXCT2 WILD-TYPE     95     73    120     77
D1177V6, multiclass
        clus
vv       OXCT2 MUTATED OXCT2 WILD-TYPE
  CLUS_1             0              95
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             3              77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  OXCT2 MUTATED        0      1      3      1      0      0
  OXCT2 WILD-TYPE     52     63     69    103     40     59
D1177V7, multiclass
        clus
vv       OXCT2 MUTATED OXCT2 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             1              63
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OXCT2 MUTATED        5      0      0
  OXCT2 WILD-TYPE    212     75     99
D1177V8, multiclass
        clus
vv       OXCT2 MUTATED OXCT2 WILD-TYPE
  CLUS_1             5             212
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  OXCT2 MUTATED        1      1      2
  OXCT2 WILD-TYPE    120    107     70
D1177V9, multiclass
        clus
vv       OXCT2 MUTATED OXCT2 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             1             107
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  OXCT2 MUTATED        2      1      0      0      1
  OXCT2 WILD-TYPE     86     65     45     55     46
D1177V10, multiclass
        clus
vv       OXCT2 MUTATED OXCT2 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1178) Variable = XIRP2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XIRP2 MUTATED       24     28      4      0
  XIRP2 WILD-TYPE    180    109     43      3
D1178V1, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1            24             180
  CLUS_2            28             109
  CLUS_3             4              43
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XIRP2 MUTATED        5     19      7     10      2
  XIRP2 WILD-TYPE     34     77     37     78     78
D1178V2, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             5              34
  CLUS_2            19              77
  CLUS_3             7              37
  CLUS_4            10              78
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XIRP2 MUTATED        3     18     12      6     12
  XIRP2 WILD-TYPE     23     61     61     76     46
D1178V3, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             3              23
  CLUS_2            18              61
  CLUS_3            12              61
  CLUS_4             6              76
  CLUS_5            12              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XIRP2 MUTATED       18     18     11      4
  XIRP2 WILD-TYPE    109     33     60     65
D1178V4, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1            18             109
  CLUS_2            18              33
  CLUS_3            11              60
  CLUS_4             4              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XIRP2 MUTATED        7      5     23      8      8
  XIRP2 WILD-TYPE     77     80     62     61     39
D1178V5, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             7              77
  CLUS_2             5              80
  CLUS_3            23              62
  CLUS_4             8              61
  CLUS_5             8              39
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XIRP2 MUTATED       14      5     12     20
  XIRP2 WILD-TYPE     81     69    109     60
D1178V6, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1            14              81
  CLUS_2             5              69
  CLUS_3            12             109
  CLUS_4            20              60
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XIRP2 MUTATED        7     16     13      7      4      9
  XIRP2 WILD-TYPE     45     48     59     97     36     50
D1178V7, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1             7              45
  CLUS_2            16              48
  CLUS_3            13              59
  CLUS_4             7              97
  CLUS_5             4              36
  CLUS_6             9              50
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XIRP2 MUTATED       39      5     12
  XIRP2 WILD-TYPE    178     70     87
D1178V8, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1            39             178
  CLUS_2             5              70
  CLUS_3            12              87
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  XIRP2 MUTATED       14      7     19
  XIRP2 WILD-TYPE    107    101     53
D1178V9, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1            14             107
  CLUS_2             7             101
  CLUS_3            19              53
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XIRP2 MUTATED       10      4      8      6     12
  XIRP2 WILD-TYPE     78     62     37     49     35
D1178V10, multiclass
        clus
vv       XIRP2 MUTATED XIRP2 WILD-TYPE
  CLUS_1            10              78
  CLUS_2             4              62
  CLUS_3             8              37
  CLUS_4             6              49
  CLUS_5            12              35
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1179) Variable = CREBBP MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED        6     25      4      0
  CREBBP WILD-TYPE    198    112     43      3
D1179V1, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              6              198
  CLUS_2             25              112
  CLUS_3              4               43
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREBBP MUTATED        5     19      5      2      0
  CREBBP WILD-TYPE     34     77     39     86     80
D1179V2, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              5               34
  CLUS_2             19               77
  CLUS_3              5               39
  CLUS_4              2               86
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREBBP MUTATED        1      9      8      3      9
  CREBBP WILD-TYPE     25     70     65     79     49
D1179V3, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              1               25
  CLUS_2              9               70
  CLUS_3              8               65
  CLUS_4              3               79
  CLUS_5              9               49
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED        8     11      7      4
  CREBBP WILD-TYPE    119     40     64     65
D1179V4, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              8              119
  CLUS_2             11               40
  CLUS_3              7               64
  CLUS_4              4               65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREBBP MUTATED        2      7     15      7      4
  CREBBP WILD-TYPE     82     78     70     62     43
D1179V5, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              2               82
  CLUS_2              7               78
  CLUS_3             15               70
  CLUS_4              7               62
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CREBBP MUTATED       10      6      1     18
  CREBBP WILD-TYPE     85     68    120     62
D1179V6, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             10               85
  CLUS_2              6               68
  CLUS_3              1              120
  CLUS_4             18               62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CREBBP MUTATED       10      9      5      3      7      2
  CREBBP WILD-TYPE     42     55     67    101     33     57
D1179V7, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             10               42
  CLUS_2              9               55
  CLUS_3              5               67
  CLUS_4              3              101
  CLUS_5              7               33
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED       30      2      4
  CREBBP WILD-TYPE    187     73     95
D1179V8, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             30              187
  CLUS_2              2               73
  CLUS_3              4               95
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  CREBBP MUTATED       10      3     11
  CREBBP WILD-TYPE    111    105     61
D1179V9, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1             10              111
  CLUS_2              3              105
  CLUS_3             11               61
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CREBBP MUTATED        7      0      5      1     11
  CREBBP WILD-TYPE     81     66     40     54     36
D1179V10, multiclass
        clus
vv       CREBBP MUTATED CREBBP WILD-TYPE
  CLUS_1              7               81
  CLUS_2              0               66
  CLUS_3              5               40
  CLUS_4              1               54
  CLUS_5             11               36
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1180) Variable = TJP2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TJP2 MUTATED        3     10      1      0
  TJP2 WILD-TYPE    201    127     46      3
D1180V1, multiclass
        clus
vv       TJP2 MUTATED TJP2 WILD-TYPE
  CLUS_1            3            201
  CLUS_2           10            127
  CLUS_3            1             46
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TJP2 MUTATED        0      7      2      1      0
  TJP2 WILD-TYPE     39     89     42     87     80
D1180V2, multiclass
        clus
vv       TJP2 MUTATED TJP2 WILD-TYPE
  CLUS_1            0             39
  CLUS_2            7             89
  CLUS_3            2             42
  CLUS_4            1             87
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TJP2 MUTATED        0      4      1      1      5
  TJP2 WILD-TYPE     26     75     72     81     53
D1180V3, multiclass
        clus
vv       TJP2 MUTATED TJP2 WILD-TYPE
  CLUS_1            0             26
  CLUS_2            4             75
  CLUS_3            1             72
  CLUS_4            1             81
  CLUS_5            5             53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TJP2 MUTATED        2      5      3      1
  TJP2 WILD-TYPE    125     46     68     68
D1180V4, multiclass
        clus
vv       TJP2 MUTATED TJP2 WILD-TYPE
  CLUS_1            2            125
  CLUS_2            5             46
  CLUS_3            3             68
  CLUS_4            1             68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TJP2 MUTATED        1      2      9      2      0
  TJP2 WILD-TYPE     83     83     76     67     47
D1180V5, multiclass
        clus
vv       TJP2 MUTATED TJP2 WILD-TYPE
  CLUS_1            1             83
  CLUS_2            2             83
  CLUS_3            9             76
  CLUS_4            2             67
  CLUS_5            0             47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TJP2 MUTATED        5      2      2      5
  TJP2 WILD-TYPE     90     72    119     75
D1180V6, multiclass
        clus
vv       TJP2 MUTATED TJP2 WILD-TYPE
  CLUS_1            5             90
  CLUS_2            2             72
  CLUS_3            2            119
  CLUS_4            5             75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TJP2 MUTATED        4      5      3      2      0      0
  TJP2 WILD-TYPE     48     59     69    102     40     59
D1180V7, multiclass
        clus
vv       TJP2 MUTATED TJP2 WILD-TYPE
  CLUS_1            4             48
  CLUS_2            5             59
  CLUS_3            3             69
  CLUS_4            2            102
  CLUS_5            0             40
  CLUS_6            0             59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TJP2 MUTATED       12      1      1
  TJP2 WILD-TYPE    205     74     98
D1180V8, multiclass
        clus
vv       TJP2 MUTATED TJP2 WILD-TYPE
  CLUS_1           12            205
  CLUS_2            1             74
  CLUS_3            1             98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TJP2 MUTATED        5      1      3
  TJP2 WILD-TYPE    116    107     69
D1180V9, multiclass
        clus
vv       TJP2 MUTATED TJP2 WILD-TYPE
  CLUS_1            5            116
  CLUS_2            1            107
  CLUS_3            3             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TJP2 MUTATED        1      0      2      1      5
  TJP2 WILD-TYPE     87     66     43     54     42
D1180V10, multiclass
        clus
vv       TJP2 MUTATED TJP2 WILD-TYPE
  CLUS_1            1             87
  CLUS_2            0             66
  CLUS_3            2             43
  CLUS_4            1             54
  CLUS_5            5             42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1181) Variable = PTPN11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        1      7      0      0
  PTPN11 WILD-TYPE    203    130     47      3
D1181V1, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              7              130
  CLUS_3              0               47
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN11 MUTATED        1      4      1      1      0
  PTPN11 WILD-TYPE     38     92     43     87     80
D1181V2, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              4               92
  CLUS_3              1               43
  CLUS_4              1               87
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN11 MUTATED        0      3      1      1      1
  PTPN11 WILD-TYPE     26     76     72     81     57
D1181V3, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              3               76
  CLUS_3              1               72
  CLUS_4              1               81
  CLUS_5              1               57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        0      3      2      1
  PTPN11 WILD-TYPE    127     48     69     68
D1181V4, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              3               48
  CLUS_3              2               69
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN11 MUTATED        1      1      4      0      0
  PTPN11 WILD-TYPE     83     84     81     69     47
D1181V5, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              1               84
  CLUS_3              4               81
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTPN11 MUTATED        1      2      0      3
  PTPN11 WILD-TYPE     94     72    121     77
D1181V6, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              3               77
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  PTPN11 MUTATED        3      3      1      0      0      1
  PTPN11 WILD-TYPE     49     61     71    104     40     58
D1181V7, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              3               61
  CLUS_3              1               71
  CLUS_4              0              104
  CLUS_5              0               40
  CLUS_6              1               58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        6      0      2
  PTPN11 WILD-TYPE    211     75     97
D1181V8, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              6              211
  CLUS_2              0               75
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PTPN11 MUTATED        3      0      3
  PTPN11 WILD-TYPE    118    108     69
D1181V9, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              0              108
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTPN11 MUTATED        2      0      2      0      2
  PTPN11 WILD-TYPE     86     66     43     55     45
D1181V10, multiclass
        clus
vv       PTPN11 MUTATED PTPN11 WILD-TYPE
  CLUS_1              2               86
  CLUS_2              0               66
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              2               45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1182) Variable = ASCL4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASCL4 MUTATED        0      5      2      0
  ASCL4 WILD-TYPE    204    132     45      3
D1182V1, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             0             204
  CLUS_2             5             132
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASCL4 MUTATED        0      2      2      0      0
  ASCL4 WILD-TYPE     39     94     42     88     80
D1182V2, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             0              39
  CLUS_2             2              94
  CLUS_3             2              42
  CLUS_4             0              88
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASCL4 MUTATED        1      2      1      0      2
  ASCL4 WILD-TYPE     25     77     72     82     56
D1182V3, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             2              77
  CLUS_3             1              72
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASCL4 MUTATED        2      2      0      2
  ASCL4 WILD-TYPE    125     49     71     67
D1182V4, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             2             125
  CLUS_2             2              49
  CLUS_3             0              71
  CLUS_4             2              67
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASCL4 MUTATED        0      2      1      1      2
  ASCL4 WILD-TYPE     84     83     84     68     45
D1182V5, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             2              83
  CLUS_3             1              84
  CLUS_4             1              68
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ASCL4 MUTATED        2      2      0      2
  ASCL4 WILD-TYPE     93     72    121     78
D1182V6, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             2              93
  CLUS_2             2              72
  CLUS_3             0             121
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ASCL4 MUTATED        0      6      0      0      1      0
  ASCL4 WILD-TYPE     52     58     72    104     39     59
D1182V7, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             0              52
  CLUS_2             6              58
  CLUS_3             0              72
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASCL4 MUTATED        6      0      1
  ASCL4 WILD-TYPE    211     75     98
D1182V8, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             6             211
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ASCL4 MUTATED        2      0      2
  ASCL4 WILD-TYPE    119    108     70
D1182V9, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             2             119
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ASCL4 MUTATED        3      0      1      0      0
  ASCL4 WILD-TYPE     85     66     44     55     47
D1182V10, multiclass
        clus
vv       ASCL4 MUTATED ASCL4 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             1              44
  CLUS_4             0              55
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1183) Variable = TESK1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TESK1 MUTATED        0     11      1      0
  TESK1 WILD-TYPE    204    126     46      3
D1183V1, multiclass
        clus
vv       TESK1 MUTATED TESK1 WILD-TYPE
  CLUS_1             0             204
  CLUS_2            11             126
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TESK1 MUTATED        0     10      0      0      1
  TESK1 WILD-TYPE     39     86     44     88     79
D1183V2, multiclass
        clus
vv       TESK1 MUTATED TESK1 WILD-TYPE
  CLUS_1             0              39
  CLUS_2            10              86
  CLUS_3             0              44
  CLUS_4             0              88
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TESK1 MUTATED        0      3      4      1      1
  TESK1 WILD-TYPE     26     76     69     81     57
D1183V3, multiclass
        clus
vv       TESK1 MUTATED TESK1 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             4              69
  CLUS_4             1              81
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TESK1 MUTATED        1      4      3      1
  TESK1 WILD-TYPE    126     47     68     68
D1183V4, multiclass
        clus
vv       TESK1 MUTATED TESK1 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             3              68
  CLUS_4             1              68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TESK1 MUTATED        0      1      6      1      3
  TESK1 WILD-TYPE     84     84     79     68     44
D1183V5, multiclass
        clus
vv       TESK1 MUTATED TESK1 WILD-TYPE
  CLUS_1             0              84
  CLUS_2             1              84
  CLUS_3             6              79
  CLUS_4             1              68
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TESK1 MUTATED        3      2      1      5
  TESK1 WILD-TYPE     92     72    120     75
D1183V6, multiclass
        clus
vv       TESK1 MUTATED TESK1 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  TESK1 MUTATED        3      4      3      1      1      0
  TESK1 WILD-TYPE     49     60     69    103     39     59
D1183V7, multiclass
        clus
vv       TESK1 MUTATED TESK1 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             4              60
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TESK1 MUTATED        9      3      0
  TESK1 WILD-TYPE    208     72     99
D1183V8, multiclass
        clus
vv       TESK1 MUTATED TESK1 WILD-TYPE
  CLUS_1             9             208
  CLUS_2             3              72
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TESK1 MUTATED        1      1      8
  TESK1 WILD-TYPE    120    107     64
D1183V9, multiclass
        clus
vv       TESK1 MUTATED TESK1 WILD-TYPE
  CLUS_1             1             120
  CLUS_2             1             107
  CLUS_3             8              64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TESK1 MUTATED        2      1      3      0      4
  TESK1 WILD-TYPE     86     65     42     55     43
D1183V10, multiclass
        clus
vv       TESK1 MUTATED TESK1 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             3              42
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1184) Variable = ORC2L MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ORC2L MUTATED        3      3      1      0
  ORC2L WILD-TYPE    201    134     46      3
D1184V1, multiclass
        clus
vv       ORC2L MUTATED ORC2L WILD-TYPE
  CLUS_1             3             201
  CLUS_2             3             134
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ORC2L MUTATED        0      4      0      1      0
  ORC2L WILD-TYPE     39     92     44     87     80
D1184V2, multiclass
        clus
vv       ORC2L MUTATED ORC2L WILD-TYPE
  CLUS_1             0              39
  CLUS_2             4              92
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             0              80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ORC2L MUTATED        0      3      3      0      1
  ORC2L WILD-TYPE     26     76     70     82     57
D1184V3, multiclass
        clus
vv       ORC2L MUTATED ORC2L WILD-TYPE
  CLUS_1             0              26
  CLUS_2             3              76
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             1              57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ORC2L MUTATED        1      4      2      0
  ORC2L WILD-TYPE    126     47     69     69
D1184V4, multiclass
        clus
vv       ORC2L MUTATED ORC2L WILD-TYPE
  CLUS_1             1             126
  CLUS_2             4              47
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ORC2L MUTATED        1      0      4      1      1
  ORC2L WILD-TYPE     83     85     81     68     46
D1184V5, multiclass
        clus
vv       ORC2L MUTATED ORC2L WILD-TYPE
  CLUS_1             1              83
  CLUS_2             0              85
  CLUS_3             4              81
  CLUS_4             1              68
  CLUS_5             1              46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ORC2L MUTATED        3      1      1      2
  ORC2L WILD-TYPE     92     73    120     78
D1184V6, multiclass
        clus
vv       ORC2L MUTATED ORC2L WILD-TYPE
  CLUS_1             3              92
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             2              78
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  ORC2L MUTATED        1      2      3      0      1      0
  ORC2L WILD-TYPE     51     62     69    104     39     59
D1184V7, multiclass
        clus
vv       ORC2L MUTATED ORC2L WILD-TYPE
  CLUS_1             1              51
  CLUS_2             2              62
  CLUS_3             3              69
  CLUS_4             0             104
  CLUS_5             1              39
  CLUS_6             0              59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ORC2L MUTATED        7      0      0
  ORC2L WILD-TYPE    210     75     99
D1184V8, multiclass
        clus
vv       ORC2L MUTATED ORC2L WILD-TYPE
  CLUS_1             7             210
  CLUS_2             0              75
  CLUS_3             0              99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ORC2L MUTATED        3      0      2
  ORC2L WILD-TYPE    118    108     70
D1184V9, multiclass
        clus
vv       ORC2L MUTATED ORC2L WILD-TYPE
  CLUS_1             3             118
  CLUS_2             0             108
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ORC2L MUTATED        1      0      0      0      4
  ORC2L WILD-TYPE     87     66     45     55     43
D1184V10, multiclass
        clus
vv       ORC2L MUTATED ORC2L WILD-TYPE
  CLUS_1             1              87
  CLUS_2             0              66
  CLUS_3             0              45
  CLUS_4             0              55
  CLUS_5             4              43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1185) Variable = DHX15 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX15 MUTATED        1      9      1      0
  DHX15 WILD-TYPE    203    128     46      3
D1185V1, multiclass
        clus
vv       DHX15 MUTATED DHX15 WILD-TYPE
  CLUS_1             1             203
  CLUS_2             9             128
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX15 MUTATED        1      5      0      1      1
  DHX15 WILD-TYPE     38     91     44     87     79
D1185V2, multiclass
        clus
vv       DHX15 MUTATED DHX15 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             0              44
  CLUS_4             1              87
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX15 MUTATED        0      2      3      0      5
  DHX15 WILD-TYPE     26     77     70     82     53
D1185V3, multiclass
        clus
vv       DHX15 MUTATED DHX15 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             2              77
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             5              53
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX15 MUTATED        3      6      1      0
  DHX15 WILD-TYPE    124     45     70     69
D1185V4, multiclass
        clus
vv       DHX15 MUTATED DHX15 WILD-TYPE
  CLUS_1             3             124
  CLUS_2             6              45
  CLUS_3             1              70
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX15 MUTATED        1      1      5      2      2
  DHX15 WILD-TYPE     83     84     80     67     45
D1185V5, multiclass
        clus
vv       DHX15 MUTATED DHX15 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             1              84
  CLUS_3             5              80
  CLUS_4             2              67
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DHX15 MUTATED        4      1      2      4
  DHX15 WILD-TYPE     91     73    119     76
D1185V6, multiclass
        clus
vv       DHX15 MUTATED DHX15 WILD-TYPE
  CLUS_1             4              91
  CLUS_2             1              73
  CLUS_3             2             119
  CLUS_4             4              76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DHX15 MUTATED        3      5      1      1      0      1
  DHX15 WILD-TYPE     49     59     71    103     40     58
D1185V7, multiclass
        clus
vv       DHX15 MUTATED DHX15 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             5              59
  CLUS_3             1              71
  CLUS_4             1             103
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX15 MUTATED        7      2      2
  DHX15 WILD-TYPE    210     73     97
D1185V8, multiclass
        clus
vv       DHX15 MUTATED DHX15 WILD-TYPE
  CLUS_1             7             210
  CLUS_2             2              73
  CLUS_3             2              97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DHX15 MUTATED        4      1      3
  DHX15 WILD-TYPE    117    107     69
D1185V9, multiclass
        clus
vv       DHX15 MUTATED DHX15 WILD-TYPE
  CLUS_1             4             117
  CLUS_2             1             107
  CLUS_3             3              69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DHX15 MUTATED        2      1      2      1      2
  DHX15 WILD-TYPE     86     65     43     54     45
D1185V10, multiclass
        clus
vv       DHX15 MUTATED DHX15 WILD-TYPE
  CLUS_1             2              86
  CLUS_2             1              65
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             2              45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1186) Variable = LRRC4 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC4 MUTATED        8     12      1      0
  LRRC4 WILD-TYPE    196    125     46      3
D1186V1, multiclass
        clus
vv       LRRC4 MUTATED LRRC4 WILD-TYPE
  CLUS_1             8             196
  CLUS_2            12             125
  CLUS_3             1              46
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC4 MUTATED        1      8      4      3      1
  LRRC4 WILD-TYPE     38     88     40     85     79
D1186V2, multiclass
        clus
vv       LRRC4 MUTATED LRRC4 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             8              88
  CLUS_3             4              40
  CLUS_4             3              85
  CLUS_5             1              79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC4 MUTATED        0      8      4      3      4
  LRRC4 WILD-TYPE     26     71     69     79     54
D1186V3, multiclass
        clus
vv       LRRC4 MUTATED LRRC4 WILD-TYPE
  CLUS_1             0              26
  CLUS_2             8              71
  CLUS_3             4              69
  CLUS_4             3              79
  CLUS_5             4              54
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC4 MUTATED        5      8      3      3
  LRRC4 WILD-TYPE    122     43     68     66
D1186V4, multiclass
        clus
vv       LRRC4 MUTATED LRRC4 WILD-TYPE
  CLUS_1             5             122
  CLUS_2             8              43
  CLUS_3             3              68
  CLUS_4             3              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC4 MUTATED        3      3      7      3      3
  LRRC4 WILD-TYPE     81     82     78     66     44
D1186V5, multiclass
        clus
vv       LRRC4 MUTATED LRRC4 WILD-TYPE
  CLUS_1             3              81
  CLUS_2             3              82
  CLUS_3             7              78
  CLUS_4             3              66
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LRRC4 MUTATED        3      2      4     10
  LRRC4 WILD-TYPE     92     72    117     70
D1186V6, multiclass
        clus
vv       LRRC4 MUTATED LRRC4 WILD-TYPE
  CLUS_1             3              92
  CLUS_2             2              72
  CLUS_3             4             117
  CLUS_4            10              70
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  LRRC4 MUTATED        3      6      7      4      0      1
  LRRC4 WILD-TYPE     49     58     65    100     40     58
D1186V7, multiclass
        clus
vv       LRRC4 MUTATED LRRC4 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             6              58
  CLUS_3             7              65
  CLUS_4             4             100
  CLUS_5             0              40
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRC4 MUTATED       14      1      6
  LRRC4 WILD-TYPE    203     74     93
D1186V8, multiclass
        clus
vv       LRRC4 MUTATED LRRC4 WILD-TYPE
  CLUS_1            14             203
  CLUS_2             1              74
  CLUS_3             6              93
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LRRC4 MUTATED        6      4      2
  LRRC4 WILD-TYPE    115    104     70
D1186V9, multiclass
        clus
vv       LRRC4 MUTATED LRRC4 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             4             104
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LRRC4 MUTATED        5      1      0      3      3
  LRRC4 WILD-TYPE     83     65     45     52     44
D1186V10, multiclass
        clus
vv       LRRC4 MUTATED LRRC4 WILD-TYPE
  CLUS_1             5              83
  CLUS_2             1              65
  CLUS_3             0              45
  CLUS_4             3              52
  CLUS_5             3              44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1187) Variable = FIGNL1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FIGNL1 MUTATED        1      6      2      0
  FIGNL1 WILD-TYPE    203    131     45      3
D1187V1, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              1              203
  CLUS_2              6              131
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FIGNL1 MUTATED        0      5      2      0      0
  FIGNL1 WILD-TYPE     39     91     42     88     80
D1187V2, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              0               39
  CLUS_2              5               91
  CLUS_3              2               42
  CLUS_4              0               88
  CLUS_5              0               80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FIGNL1 MUTATED        0      4      0      1      3
  FIGNL1 WILD-TYPE     26     75     73     81     55
D1187V3, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              4               75
  CLUS_3              0               73
  CLUS_4              1               81
  CLUS_5              3               55
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FIGNL1 MUTATED        0      6      1      1
  FIGNL1 WILD-TYPE    127     45     70     68
D1187V4, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              0              127
  CLUS_2              6               45
  CLUS_3              1               70
  CLUS_4              1               68
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FIGNL1 MUTATED        0      2      6      0      0
  FIGNL1 WILD-TYPE     84     83     79     69     47
D1187V5, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              0               84
  CLUS_2              2               83
  CLUS_3              6               79
  CLUS_4              0               69
  CLUS_5              0               47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FIGNL1 MUTATED        1      2      0      5
  FIGNL1 WILD-TYPE     94     72    121     75
D1187V6, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              1               94
  CLUS_2              2               72
  CLUS_3              0              121
  CLUS_4              5               75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FIGNL1 MUTATED        1      4      3      1      0      0
  FIGNL1 WILD-TYPE     51     60     69    103     40     59
D1187V7, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              1               51
  CLUS_2              4               60
  CLUS_3              3               69
  CLUS_4              1              103
  CLUS_5              0               40
  CLUS_6              0               59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FIGNL1 MUTATED        8      1      0
  FIGNL1 WILD-TYPE    209     74     99
D1187V8, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              8              209
  CLUS_2              1               74
  CLUS_3              0               99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FIGNL1 MUTATED        3      1      3
  FIGNL1 WILD-TYPE    118    107     69
D1187V9, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              3              118
  CLUS_2              1              107
  CLUS_3              3               69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FIGNL1 MUTATED        0      1      2      0      4
  FIGNL1 WILD-TYPE     88     65     43     55     43
D1187V10, multiclass
        clus
vv       FIGNL1 MUTATED FIGNL1 WILD-TYPE
  CLUS_1              0               88
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              0               55
  CLUS_5              4               43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1188) Variable = CD6 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD6 MUTATED        2      5      3      0
  CD6 WILD-TYPE    202    132     44      3
D1188V1, multiclass
        clus
vv       CD6 MUTATED CD6 WILD-TYPE
  CLUS_1           2           202
  CLUS_2           5           132
  CLUS_3           3            44
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD6 MUTATED        2      4      1      1      1
  CD6 WILD-TYPE     37     92     43     87     79
D1188V2, multiclass
        clus
vv       CD6 MUTATED CD6 WILD-TYPE
  CLUS_1           2            37
  CLUS_2           4            92
  CLUS_3           1            43
  CLUS_4           1            87
  CLUS_5           1            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD6 MUTATED        1      2      4      1      1
  CD6 WILD-TYPE     25     77     69     81     57
D1188V3, multiclass
        clus
vv       CD6 MUTATED CD6 WILD-TYPE
  CLUS_1           1            25
  CLUS_2           2            77
  CLUS_3           4            69
  CLUS_4           1            81
  CLUS_5           1            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD6 MUTATED        2      6      1      0
  CD6 WILD-TYPE    125     45     70     69
D1188V4, multiclass
        clus
vv       CD6 MUTATED CD6 WILD-TYPE
  CLUS_1           2           125
  CLUS_2           6            45
  CLUS_3           1            70
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD6 MUTATED        1      3      3      1      2
  CD6 WILD-TYPE     83     82     82     68     45
D1188V5, multiclass
        clus
vv       CD6 MUTATED CD6 WILD-TYPE
  CLUS_1           1            83
  CLUS_2           3            82
  CLUS_3           3            82
  CLUS_4           1            68
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  CD6 MUTATED        2      1      1      6
  CD6 WILD-TYPE     93     73    120     74
D1188V6, multiclass
        clus
vv       CD6 MUTATED CD6 WILD-TYPE
  CLUS_1           2            93
  CLUS_2           1            73
  CLUS_3           1           120
  CLUS_4           6            74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  CD6 MUTATED        3      2      1      2      2      0
  CD6 WILD-TYPE     49     62     71    102     38     59
D1188V7, multiclass
        clus
vv       CD6 MUTATED CD6 WILD-TYPE
  CLUS_1           3            49
  CLUS_2           2            62
  CLUS_3           1            71
  CLUS_4           2           102
  CLUS_5           2            38
  CLUS_6           0            59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CD6 MUTATED        9      1      0
  CD6 WILD-TYPE    208     74     99
D1188V8, multiclass
        clus
vv       CD6 MUTATED CD6 WILD-TYPE
  CLUS_1           9           208
  CLUS_2           1            74
  CLUS_3           0            99
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  CD6 MUTATED        4      1      2
  CD6 WILD-TYPE    117    107     70
D1188V9, multiclass
        clus
vv       CD6 MUTATED CD6 WILD-TYPE
  CLUS_1           4           117
  CLUS_2           1           107
  CLUS_3           2            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  CD6 MUTATED        2      0      2      0      3
  CD6 WILD-TYPE     86     66     43     55     44
D1188V10, multiclass
        clus
vv       CD6 MUTATED CD6 WILD-TYPE
  CLUS_1           2            86
  CLUS_2           0            66
  CLUS_3           2            43
  CLUS_4           0            55
  CLUS_5           3            44
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1189) Variable = POGZ MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POGZ MUTATED        4     16      4      0
  POGZ WILD-TYPE    200    121     43      3
D1189V1, multiclass
        clus
vv       POGZ MUTATED POGZ WILD-TYPE
  CLUS_1            4            200
  CLUS_2           16            121
  CLUS_3            4             43
  CLUS_4            0              3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POGZ MUTATED        2     15      3      2      0
  POGZ WILD-TYPE     37     81     41     86     80
D1189V2, multiclass
        clus
vv       POGZ MUTATED POGZ WILD-TYPE
  CLUS_1            2             37
  CLUS_2           15             81
  CLUS_3            3             41
  CLUS_4            2             86
  CLUS_5            0             80
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POGZ MUTATED        1      5      5      3      6
  POGZ WILD-TYPE     25     74     68     79     52
D1189V3, multiclass
        clus
vv       POGZ MUTATED POGZ WILD-TYPE
  CLUS_1            1             25
  CLUS_2            5             74
  CLUS_3            5             68
  CLUS_4            3             79
  CLUS_5            6             52
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POGZ MUTATED        5     11      1      3
  POGZ WILD-TYPE    122     40     70     66
D1189V4, multiclass
        clus
vv       POGZ MUTATED POGZ WILD-TYPE
  CLUS_1            5            122
  CLUS_2           11             40
  CLUS_3            1             70
  CLUS_4            3             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POGZ MUTATED        2      4     11      2      4
  POGZ WILD-TYPE     82     81     74     67     43
D1189V5, multiclass
        clus
vv       POGZ MUTATED POGZ WILD-TYPE
  CLUS_1            2             82
  CLUS_2            4             81
  CLUS_3           11             74
  CLUS_4            2             67
  CLUS_5            4             43
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  POGZ MUTATED        5      2      5     11
  POGZ WILD-TYPE     90     72    116     69
D1189V6, multiclass
        clus
vv       POGZ MUTATED POGZ WILD-TYPE
  CLUS_1            5             90
  CLUS_2            2             72
  CLUS_3            5            116
  CLUS_4           11             69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  POGZ MUTATED        7      7      3      3      2      2
  POGZ WILD-TYPE     45     57     69    101     38     57
D1189V7, multiclass
        clus
vv       POGZ MUTATED POGZ WILD-TYPE
  CLUS_1            7             45
  CLUS_2            7             57
  CLUS_3            3             69
  CLUS_4            3            101
  CLUS_5            2             38
  CLUS_6            2             57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POGZ MUTATED       18      3      3
  POGZ WILD-TYPE    199     72     96
D1189V8, multiclass
        clus
vv       POGZ MUTATED POGZ WILD-TYPE
  CLUS_1           18            199
  CLUS_2            3             72
  CLUS_3            3             96
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  POGZ MUTATED        8      2      8
  POGZ WILD-TYPE    113    106     64
D1189V9, multiclass
        clus
vv       POGZ MUTATED POGZ WILD-TYPE
  CLUS_1            8            113
  CLUS_2            2            106
  CLUS_3            8             64
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  POGZ MUTATED        2      1      4      2      9
  POGZ WILD-TYPE     86     65     41     53     38
D1189V10, multiclass
        clus
vv       POGZ MUTATED POGZ WILD-TYPE
  CLUS_1            2             86
  CLUS_2            1             65
  CLUS_3            4             41
  CLUS_4            2             53
  CLUS_5            9             38
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1190) Variable = RBM16 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM16 MUTATED        2      9      2      0
  RBM16 WILD-TYPE    202    128     45      3
D1190V1, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             2             202
  CLUS_2             9             128
  CLUS_3             2              45
  CLUS_4             0               3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM16 MUTATED        1      5      1      2      2
  RBM16 WILD-TYPE     38     91     43     86     78
D1190V2, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             1              38
  CLUS_2             5              91
  CLUS_3             1              43
  CLUS_4             2              86
  CLUS_5             2              78
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM16 MUTATED        1      4      3      0      2
  RBM16 WILD-TYPE     25     75     70     82     56
D1190V3, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             1              25
  CLUS_2             4              75
  CLUS_3             3              70
  CLUS_4             0              82
  CLUS_5             2              56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM16 MUTATED        1      7      2      0
  RBM16 WILD-TYPE    126     44     69     69
D1190V4, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             1             126
  CLUS_2             7              44
  CLUS_3             2              69
  CLUS_4             0              69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM16 MUTATED        1      2      7      3      0
  RBM16 WILD-TYPE     83     83     78     66     47
D1190V5, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             1              83
  CLUS_2             2              83
  CLUS_3             7              78
  CLUS_4             3              66
  CLUS_5             0              47
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM16 MUTATED        6      1      1      5
  RBM16 WILD-TYPE     89     73    120     75
D1190V6, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             6              89
  CLUS_2             1              73
  CLUS_3             1             120
  CLUS_4             5              75
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  RBM16 MUTATED        3      4      3      1      1      1
  RBM16 WILD-TYPE     49     60     69    103     39     58
D1190V7, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             3              49
  CLUS_2             4              60
  CLUS_3             3              69
  CLUS_4             1             103
  CLUS_5             1              39
  CLUS_6             1              58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM16 MUTATED       12      0      1
  RBM16 WILD-TYPE    205     75     98
D1190V8, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1            12             205
  CLUS_2             0              75
  CLUS_3             1              98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM16 MUTATED        6      3      2
  RBM16 WILD-TYPE    115    105     70
D1190V9, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             6             115
  CLUS_2             3             105
  CLUS_3             2              70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM16 MUTATED        3      0      2      1      5
  RBM16 WILD-TYPE     85     66     43     54     42
D1190V10, multiclass
        clus
vv       RBM16 MUTATED RBM16 WILD-TYPE
  CLUS_1             3              85
  CLUS_2             0              66
  CLUS_3             2              43
  CLUS_4             1              54
  CLUS_5             5              42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1191) Variable = SPOCK1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOCK1 MUTATED        5      6      2      0
  SPOCK1 WILD-TYPE    199    131     45      3
D1191V1, multiclass
        clus
vv       SPOCK1 MUTATED SPOCK1 WILD-TYPE
  CLUS_1              5              199
  CLUS_2              6              131
  CLUS_3              2               45
  CLUS_4              0                3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPOCK1 MUTATED        1      8      1      2      1
  SPOCK1 WILD-TYPE     38     88     43     86     79
D1191V2, multiclass
        clus
vv       SPOCK1 MUTATED SPOCK1 WILD-TYPE
  CLUS_1              1               38
  CLUS_2              8               88
  CLUS_3              1               43
  CLUS_4              2               86
  CLUS_5              1               79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPOCK1 MUTATED        0      5      4      1      2
  SPOCK1 WILD-TYPE     26     74     69     81     56
D1191V3, multiclass
        clus
vv       SPOCK1 MUTATED SPOCK1 WILD-TYPE
  CLUS_1              0               26
  CLUS_2              5               74
  CLUS_3              4               69
  CLUS_4              1               81
  CLUS_5              2               56
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOCK1 MUTATED        5      4      3      0
  SPOCK1 WILD-TYPE    122     47     68     69
D1191V4, multiclass
        clus
vv       SPOCK1 MUTATED SPOCK1 WILD-TYPE
  CLUS_1              5              122
  CLUS_2              4               47
  CLUS_3              3               68
  CLUS_4              0               69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPOCK1 MUTATED        1      3      5      3      1
  SPOCK1 WILD-TYPE     83     82     80     66     46
D1191V5, multiclass
        clus
vv       SPOCK1 MUTATED SPOCK1 WILD-TYPE
  CLUS_1              1               83
  CLUS_2              3               82
  CLUS_3              5               80
  CLUS_4              3               66
  CLUS_5              1               46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SPOCK1 MUTATED        3      3      1      6
  SPOCK1 WILD-TYPE     92     71    120     74
D1191V6, multiclass
        clus
vv       SPOCK1 MUTATED SPOCK1 WILD-TYPE
  CLUS_1              3               92
  CLUS_2              3               71
  CLUS_3              1              120
  CLUS_4              6               74
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SPOCK1 MUTATED        3      2      2      2      2      2
  SPOCK1 WILD-TYPE     49     62     70    102     38     57
D1191V7, multiclass
        clus
vv       SPOCK1 MUTATED SPOCK1 WILD-TYPE
  CLUS_1              3               49
  CLUS_2              2               62
  CLUS_3              2               70
  CLUS_4              2              102
  CLUS_5              2               38
  CLUS_6              2               57
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPOCK1 MUTATED        8      3      2
  SPOCK1 WILD-TYPE    209     72     97
D1191V8, multiclass
        clus
vv       SPOCK1 MUTATED SPOCK1 WILD-TYPE
  CLUS_1              8              209
  CLUS_2              3               72
  CLUS_3              2               97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  SPOCK1 MUTATED        6      3      4
  SPOCK1 WILD-TYPE    115    105     68
D1191V9, multiclass
        clus
vv       SPOCK1 MUTATED SPOCK1 WILD-TYPE
  CLUS_1              6              115
  CLUS_2              3              105
  CLUS_3              4               68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SPOCK1 MUTATED        3      1      2      2      5
  SPOCK1 WILD-TYPE     85     65     43     53     42
D1191V10, multiclass
        clus
vv       SPOCK1 MUTATED SPOCK1 WILD-TYPE
  CLUS_1              3               85
  CLUS_2              1               65
  CLUS_3              2               43
  CLUS_4              2               53
  CLUS_5              5               42
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1192) Variable = FAH MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAH MUTATED        3      3      1      0
  FAH WILD-TYPE    201    134     46      3
D1192V1, multiclass
        clus
vv       FAH MUTATED FAH WILD-TYPE
  CLUS_1           3           201
  CLUS_2           3           134
  CLUS_3           1            46
  CLUS_4           0             3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAH MUTATED        1      1      1      1      1
  FAH WILD-TYPE     38     95     43     87     79
D1192V2, multiclass
        clus
vv       FAH MUTATED FAH WILD-TYPE
  CLUS_1           1            38
  CLUS_2           1            95
  CLUS_3           1            43
  CLUS_4           1            87
  CLUS_5           1            79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAH MUTATED        0      3      3      0      1
  FAH WILD-TYPE     26     76     70     82     57
D1192V3, multiclass
        clus
vv       FAH MUTATED FAH WILD-TYPE
  CLUS_1           0            26
  CLUS_2           3            76
  CLUS_3           3            70
  CLUS_4           0            82
  CLUS_5           1            57
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAH MUTATED        1      6      0      0
  FAH WILD-TYPE    126     45     71     69
D1192V4, multiclass
        clus
vv       FAH MUTATED FAH WILD-TYPE
  CLUS_1           1           126
  CLUS_2           6            45
  CLUS_3           0            71
  CLUS_4           0            69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAH MUTATED        1      0      2      2      1
  FAH WILD-TYPE     83     85     83     67     46
D1192V5, multiclass
        clus
vv       FAH MUTATED FAH WILD-TYPE
  CLUS_1           1            83
  CLUS_2           0            85
  CLUS_3           2            83
  CLUS_4           2            67
  CLUS_5           1            46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAH MUTATED        3      1      1      1
  FAH WILD-TYPE     92     73    120     79
D1192V6, multiclass
        clus
vv       FAH MUTATED FAH WILD-TYPE
  CLUS_1           3            92
  CLUS_2           1            73
  CLUS_3           1           120
  CLUS_4           1            79
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  FAH MUTATED        1      3      1      0      1      1
  FAH WILD-TYPE     51     61     71    104     39     58
D1192V7, multiclass
        clus
vv       FAH MUTATED FAH WILD-TYPE
  CLUS_1           1            51
  CLUS_2           3            61
  CLUS_3           1            71
  CLUS_4           0           104
  CLUS_5           1            39
  CLUS_6           1            58
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FAH MUTATED        5      0      2
  FAH WILD-TYPE    212     75     97
D1192V8, multiclass
        clus
vv       FAH MUTATED FAH WILD-TYPE
  CLUS_1           5           212
  CLUS_2           0            75
  CLUS_3           2            97
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  FAH MUTATED        2      1      1
  FAH WILD-TYPE    119    107     71
D1192V9, multiclass
        clus
vv       FAH MUTATED FAH WILD-TYPE
  CLUS_1           2           119
  CLUS_2           1           107
  CLUS_3           1            71
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAH MUTATED        0      0      1      1      2
  FAH WILD-TYPE     88     66     44     54     45
D1192V10, multiclass
        clus
vv       FAH MUTATED FAH WILD-TYPE
  CLUS_1           0            88
  CLUS_2           0            66
  CLUS_3           1            44
  CLUS_4           1            54
  CLUS_5           2            45
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(1193) Variable = SERPINB8 MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB8 MUTATED        1      6      1      0
  SERPINB8 WILD-TYPE    203    131     46      3
D1193V1, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                1                203
  CLUS_2                6                131
  CLUS_3                1                 46
  CLUS_4                0                  3
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB8 MUTATED        0      4      1      1      1
  SERPINB8 WILD-TYPE     39     92     43     87     79
D1193V2, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                0                 39
  CLUS_2                4                 92
  CLUS_3                1                 43
  CLUS_4                1                 87
  CLUS_5                1                 79
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB8 MUTATED        1      4      1      0      0
  SERPINB8 WILD-TYPE     25     75     72     82     58
D1193V3, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                4                 75
  CLUS_3                1                 72
  CLUS_4                0                 82
  CLUS_5                0                 58
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB8 MUTATED        1      2      3      0
  SERPINB8 WILD-TYPE    126     49     68     69
D1193V4, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                1                126
  CLUS_2                2                 49
  CLUS_3                3                 68
  CLUS_4                0                 69
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB8 MUTATED        0      0      4      2      1
  SERPINB8 WILD-TYPE     84     85     81     67     46
D1193V5, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                0                 84
  CLUS_2                0                 85
  CLUS_3                4                 81
  CLUS_4                2                 67
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SERPINB8 MUTATED        2      0      1      4
  SERPINB8 WILD-TYPE     93     74    120     76
D1193V6, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                2                 93
  CLUS_2                0                 74
  CLUS_3                1                120
  CLUS_4                4                 76
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  SERPINB8 MUTATED        1      2      3      1      1      0
  SERPINB8 WILD-TYPE     51     62     69    103     39     59
D1193V7, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                1                 51
  CLUS_2                2                 62
  CLUS_3                3                 69
  CLUS_4                1                103
  CLUS_5                1                 39
  CLUS_6                0                 59
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINB8 MUTATED        5      2      1
  SERPINB8 WILD-TYPE    212     73     98
D1193V8, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                5                212
  CLUS_2                2                 73
  CLUS_3                1                 98
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  SERPINB8 MUTATED        3      0      3
  SERPINB8 WILD-TYPE    118    108     69
D1193V9, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                3                118
  CLUS_2                0                108
  CLUS_3                3                 69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SERPINB8 MUTATED        2      1      2      0      1
  SERPINB8 WILD-TYPE     86     65     43     55     46
D1193V10, multiclass
        clus
vv       SERPINB8 MUTATED SERPINB8 WILD-TYPE
  CLUS_1                2                 86
  CLUS_2                1                 65
  CLUS_3                2                 43
  CLUS_4                0                 55
  CLUS_5                1                 46
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
