This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 82 arm-level events and 10 molecular subtypes across 625 patients, 493 significant findings detected with P value < 0.05 and Q value < 0.25.
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1p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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1q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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3q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q gain cnv correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5q gain cnv correlated to 'CN_CNMF'.
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6p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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8p gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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8q gain cnv correlated to 'METHLYATION_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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9q gain cnv correlated to 'CN_CNMF'.
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10p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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10q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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11p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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11q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q gain cnv correlated to 'CN_CNMF'.
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13q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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14q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.
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19p gain cnv correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.
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19q gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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21q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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22q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xp gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1q loss cnv correlated to 'CN_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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2p loss cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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2q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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7p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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7q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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8p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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13q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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14q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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15q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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16p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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18q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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19q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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20p loss cnv correlated to 'CN_CNMF'.
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20q loss cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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21q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xp loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Table 1. Get Full Table Overview of the association between significant copy number variation of 82 arm-level events and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 493 significant findings detected.
|
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
| nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
| 6p gain | 118 (19%) | 507 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.0239 (0.044) |
0.031 (0.0544) |
0.0251 (0.0457) |
1e-05 (4.38e-05) |
0.0104 (0.0216) |
1e-05 (4.38e-05) |
0.00442 (0.0103) |
2e-05 (8.24e-05) |
| xq loss | 98 (16%) | 527 |
1e-05 (4.38e-05) |
0.00027 (0.000839) |
0.0284 (0.0505) |
0.0022 (0.0055) |
6e-05 (0.000217) |
0.00048 (0.00141) |
0.00107 (0.00292) |
0.0004 (0.0012) |
0.0275 (0.0492) |
0.0358 (0.0617) |
| 5p gain | 179 (29%) | 446 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.572 (0.64) |
0.0198 (0.0378) |
6e-05 (0.000217) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
5e-05 (0.000187) |
1e-05 (4.38e-05) |
| 6q gain | 100 (16%) | 525 |
1e-05 (4.38e-05) |
0.00013 (0.000425) |
0.0419 (0.0707) |
0.0373 (0.0637) |
0.0103 (0.0214) |
0.00054 (0.00156) |
0.0716 (0.113) |
1e-05 (4.38e-05) |
0.0234 (0.0434) |
1e-05 (4.38e-05) |
| 18p gain | 135 (22%) | 490 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.584 (0.651) |
0.0187 (0.0364) |
0.00303 (0.00737) |
1e-05 (4.38e-05) |
0.00076 (0.00215) |
0.00015 (0.000484) |
0.0018 (0.0046) |
0.00077 (0.00216) |
| 5q loss | 195 (31%) | 430 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.0149 (0.0297) |
0.412 (0.49) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
2e-05 (8.24e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
| 8p loss | 156 (25%) | 469 |
1e-05 (4.38e-05) |
0.0084 (0.0182) |
0.131 (0.19) |
0.00618 (0.0139) |
0.00197 (0.005) |
1e-05 (4.38e-05) |
4e-05 (0.000151) |
1e-05 (4.38e-05) |
0.0395 (0.067) |
3e-05 (0.000117) |
| xp loss | 123 (20%) | 502 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.275 (0.348) |
0.00254 (0.00629) |
1e-05 (4.38e-05) |
0.00049 (0.00143) |
0.0001 (0.000339) |
9e-05 (0.000306) |
0.00612 (0.0139) |
0.00086 (0.0024) |
| 2p gain | 137 (22%) | 488 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.521 (0.595) |
0.6 (0.668) |
9e-05 (0.000306) |
2e-05 (8.24e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
5e-05 (0.000187) |
1e-05 (4.38e-05) |
| 2q gain | 113 (18%) | 512 |
1e-05 (4.38e-05) |
3e-05 (0.000117) |
0.993 (0.993) |
0.848 (0.886) |
0.00619 (0.0139) |
0.00016 (0.000515) |
0.00044 (0.00131) |
0.00069 (0.00196) |
0.00858 (0.0185) |
0.0257 (0.0466) |
| 3q gain | 170 (27%) | 455 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.161 (0.221) |
0.922 (0.945) |
0.00039 (0.00118) |
0.00013 (0.000425) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
6e-05 (0.000217) |
1e-05 (4.38e-05) |
| 7p gain | 308 (49%) | 317 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.541 (0.615) |
0.364 (0.441) |
0.00025 (0.000779) |
0.00377 (0.00893) |
0.003 (0.00732) |
0.00012 (0.000398) |
0.017 (0.0335) |
0.00908 (0.0194) |
| 12p gain | 149 (24%) | 476 |
1e-05 (4.38e-05) |
8e-05 (0.000276) |
0.877 (0.907) |
0.233 (0.302) |
0.022 (0.041) |
0.00195 (0.00497) |
0.00032 (0.000983) |
0.0004 (0.0012) |
0.00065 (0.00186) |
6e-05 (0.000217) |
| 13q gain | 197 (32%) | 428 |
1e-05 (4.38e-05) |
0.0323 (0.0563) |
0.113 (0.168) |
0.778 (0.826) |
3e-05 (0.000117) |
1e-05 (4.38e-05) |
0.0127 (0.0256) |
1e-05 (4.38e-05) |
0.0126 (0.0255) |
1e-05 (4.38e-05) |
| 14q gain | 76 (12%) | 549 |
1e-05 (4.38e-05) |
8e-05 (0.000276) |
0.558 (0.627) |
0.156 (0.215) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
6e-05 (0.000217) |
1e-05 (4.38e-05) |
| 16q gain | 86 (14%) | 539 |
1e-05 (4.38e-05) |
0.00111 (0.00301) |
0.0863 (0.133) |
0.415 (0.493) |
0.00624 (0.014) |
0.00018 (0.000568) |
0.00328 (0.00789) |
4e-05 (0.000151) |
0.00688 (0.0152) |
3e-05 (0.000117) |
| 17p gain | 61 (10%) | 564 |
1e-05 (4.38e-05) |
0.00344 (0.00825) |
0.455 (0.53) |
0.377 (0.455) |
0.0167 (0.033) |
0.021 (0.0395) |
4e-05 (0.000151) |
0.0195 (0.0375) |
0.00596 (0.0136) |
0.0013 (0.00344) |
| 22q gain | 63 (10%) | 562 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.976 (0.981) |
0.744 (0.793) |
9e-05 (0.000306) |
7e-05 (0.000247) |
3e-05 (0.000117) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
| xq gain | 93 (15%) | 532 |
1e-05 (4.38e-05) |
3e-05 (0.000117) |
0.427 (0.505) |
0.208 (0.275) |
0.00882 (0.019) |
8e-05 (0.000276) |
0.00206 (0.0052) |
0.00023 (0.00072) |
0.0343 (0.0596) |
0.00017 (0.000538) |
| 3p loss | 187 (30%) | 438 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.733 (0.784) |
0.181 (0.243) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
| 4p loss | 274 (44%) | 351 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.755 (0.804) |
0.863 (0.898) |
0.0017 (0.00438) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
| 5p loss | 110 (18%) | 515 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.135 (0.194) |
0.354 (0.432) |
8e-05 (0.000276) |
1e-05 (4.38e-05) |
0.00023 (0.00072) |
1e-05 (4.38e-05) |
0.0108 (0.0223) |
1e-05 (4.38e-05) |
| 9p loss | 249 (40%) | 376 |
1e-05 (4.38e-05) |
8e-05 (0.000276) |
0.47 (0.544) |
0.15 (0.21) |
7e-05 (0.000247) |
1e-05 (4.38e-05) |
0.00051 (0.00148) |
1e-05 (4.38e-05) |
0.00098 (0.00271) |
0.00012 (0.000398) |
| 9q loss | 173 (28%) | 452 |
1e-05 (4.38e-05) |
4e-05 (0.000151) |
0.24 (0.31) |
0.499 (0.573) |
0.00687 (0.0152) |
1e-05 (4.38e-05) |
0.00017 (0.000538) |
1e-05 (4.38e-05) |
3e-05 (0.000117) |
2e-05 (8.24e-05) |
| 10p loss | 118 (19%) | 507 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.913 (0.937) |
0.707 (0.762) |
0.00377 (0.00893) |
1e-05 (4.38e-05) |
0.00272 (0.00668) |
1e-05 (4.38e-05) |
0.00156 (0.00406) |
1e-05 (4.38e-05) |
| 10q loss | 118 (19%) | 507 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.364 (0.441) |
0.564 (0.634) |
0.00077 (0.00216) |
1e-05 (4.38e-05) |
0.00356 (0.00851) |
1e-05 (4.38e-05) |
0.00212 (0.00533) |
2e-05 (8.24e-05) |
| 11p loss | 117 (19%) | 508 |
1e-05 (4.38e-05) |
6e-05 (0.000217) |
0.419 (0.495) |
0.0906 (0.138) |
7e-05 (0.000247) |
4e-05 (0.000151) |
2e-05 (8.24e-05) |
0.00015 (0.000484) |
0.00359 (0.00856) |
0.00556 (0.0127) |
| 11q loss | 122 (20%) | 503 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.479 (0.553) |
0.393 (0.47) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
| 13q loss | 103 (16%) | 522 |
1e-05 (4.38e-05) |
3e-05 (0.000117) |
0.96 (0.968) |
0.0547 (0.0895) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
| 17p loss | 237 (38%) | 388 |
1e-05 (4.38e-05) |
3e-05 (0.000117) |
0.14 (0.198) |
0.131 (0.19) |
0.00056 (0.00161) |
1e-05 (4.38e-05) |
0.00012 (0.000398) |
1e-05 (4.38e-05) |
0.0194 (0.0373) |
7e-05 (0.000247) |
| 19p loss | 182 (29%) | 443 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.13 (0.189) |
0.0826 (0.129) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
| 19q loss | 142 (23%) | 483 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.213 (0.28) |
0.113 (0.168) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
2e-05 (8.24e-05) |
1e-05 (4.38e-05) |
| 21q loss | 287 (46%) | 338 |
1e-05 (4.38e-05) |
0.0264 (0.0474) |
0.947 (0.963) |
0.836 (0.876) |
0.00045 (0.00133) |
1e-05 (4.38e-05) |
0.0352 (0.0608) |
1e-05 (4.38e-05) |
0.00017 (0.000538) |
0.0199 (0.0379) |
| 22q loss | 218 (35%) | 407 |
1e-05 (4.38e-05) |
0.0104 (0.0216) |
0.615 (0.681) |
0.455 (0.53) |
0.0133 (0.0268) |
1e-05 (4.38e-05) |
0.0489 (0.0814) |
1e-05 (4.38e-05) |
0.00244 (0.00606) |
0.00012 (0.000398) |
| 1q gain | 170 (27%) | 455 |
1e-05 (4.38e-05) |
1e-05 (4.38e-05) |
0.856 (0.893) |
0.119 (0.176) |
0.125 (0.183) |
0.00466 (0.0108) |
0.00036 (0.0011) |
1e-05 (4.38e-05) |
0.00172 (0.00442) |
0.00084 (0.00235) |
| 15q gain | 67 (11%) | 558 |
1e-05 (4.38e-05) |
0.0157 (0.0312) |
0.197 (0.262) |
0.191 (0.255) |
0.00255 (0.0063) |
0.0013 (0.00344) |
0.0372 (0.0637) |
0.0707 (0.112) |
0.0192 (0.0372) |
0.00131 (0.00345) |
| 20p gain | 349 (56%) | 276 |
1e-05 (4.38e-05) |
0.00149 (0.00389) |
0.133 (0.191) |
0.074 (0.116) |
0.301 (0.374) |
0.001 (0.00275) |
0.00669 (0.0148) |
3e-05 (0.000117) |
0.0124 (0.0251) |
2e-05 (8.24e-05) |
| 21q gain | 39 (6%) | 586 |
3e-05 (0.000117) |
4e-05 (0.000151) |
0.924 (0.946) |
0.636 (0.701) |
0.00799 (0.0174) |
0.0141 (0.0282) |
0.00466 (0.0108) |
0.00217 (0.00544) |
0.0766 (0.12) |
0.0468 (0.0784) |
| xp gain | 75 (12%) | 550 |
0.00614 (0.0139) |
2e-05 (8.24e-05) |
0.807 (0.853) |
0.214 (0.28) |
0.0408 (0.069) |
0.0338 (0.0589) |
0.0436 (0.0734) |
0.00324 (0.00781) |
0.0829 (0.129) |
0.0219 (0.0409) |
| 1p loss | 97 (16%) | 528 |
1e-05 (4.38e-05) |
0.00039 (0.00118) |
0.227 (0.296) |
0.452 (0.528) |
0.00033 (0.00101) |
0.0239 (0.044) |
0.0256 (0.0465) |
0.00091 (0.00253) |
0.13 (0.189) |
0.035 (0.0605) |
| 4q loss | 256 (41%) | 369 |
1e-05 (4.38e-05) |
0.00013 (0.000425) |
0.328 (0.404) |
0.302 (0.374) |
0.113 (0.168) |
8e-05 (0.000276) |
0.00625 (0.014) |
1e-05 (4.38e-05) |
0.00755 (0.0166) |
1e-05 (4.38e-05) |
| 6p loss | 93 (15%) | 532 |
1e-05 (4.38e-05) |
0.00807 (0.0175) |
0.211 (0.278) |
0.281 (0.353) |
0.0156 (0.0309) |
0.00094 (0.0026) |
0.0385 (0.0654) |
0.00118 (0.00317) |
0.15 (0.21) |
0.0205 (0.0389) |
| 12p loss | 98 (16%) | 527 |
1e-05 (4.38e-05) |
0.0118 (0.0242) |
0.107 (0.161) |
0.875 (0.906) |
0.00032 (0.000983) |
1e-05 (4.38e-05) |
0.0866 (0.133) |
1e-05 (4.38e-05) |
0.00883 (0.019) |
0.00011 (0.000371) |
| 14q loss | 157 (25%) | 468 |
1e-05 (4.38e-05) |
0.0073 (0.016) |
0.538 (0.612) |
0.285 (0.358) |
0.0202 (0.0384) |
1e-05 (4.38e-05) |
0.83 (0.872) |
1e-05 (4.38e-05) |
0.0474 (0.0793) |
0.00013 (0.000425) |
| 16p loss | 154 (25%) | 471 |
1e-05 (4.38e-05) |
0.0111 (0.023) |
0.16 (0.22) |
0.371 (0.448) |
0.0285 (0.0505) |
1e-05 (4.38e-05) |
0.0911 (0.138) |
1e-05 (4.38e-05) |
0.00044 (0.00131) |
2e-05 (8.24e-05) |
| 1p gain | 84 (13%) | 541 |
1e-05 (4.38e-05) |
0.00148 (0.00388) |
0.667 (0.728) |
0.273 (0.347) |
0.653 (0.715) |
0.0006 (0.00172) |
0.0297 (0.0525) |
0.00115 (0.0031) |
0.0247 (0.0451) |
0.0596 (0.0963) |
| 11q gain | 102 (16%) | 523 |
1e-05 (4.38e-05) |
0.0373 (0.0637) |
0.201 (0.267) |
0.154 (0.213) |
0.075 (0.118) |
0.00109 (0.00297) |
0.0883 (0.135) |
0.00132 (0.00347) |
0.0032 (0.00774) |
0.00128 (0.00341) |
| 17q gain | 108 (17%) | 517 |
1e-05 (4.38e-05) |
0.00781 (0.017) |
0.829 (0.872) |
0.862 (0.898) |
0.0135 (0.027) |
0.0179 (0.035) |
0.00383 (0.00905) |
0.177 (0.238) |
0.0522 (0.0862) |
0.0123 (0.025) |
| 19q gain | 119 (19%) | 506 |
1e-05 (4.38e-05) |
0.333 (0.408) |
0.00918 (0.0196) |
0.0277 (0.0494) |
0.0296 (0.0525) |
0.334 (0.41) |
0.266 (0.339) |
0.00161 (0.00416) |
0.134 (0.193) |
0.031 (0.0544) |
| 3q loss | 92 (15%) | 533 |
1e-05 (4.38e-05) |
0.00127 (0.00339) |
0.0571 (0.0928) |
0.118 (0.174) |
0.0141 (0.0282) |
1e-05 (4.38e-05) |
0.0663 (0.106) |
1e-05 (4.38e-05) |
0.0841 (0.13) |
0.0113 (0.0233) |
| 12q loss | 87 (14%) | 538 |
1e-05 (4.38e-05) |
0.0621 (0.0999) |
0.293 (0.365) |
0.743 (0.793) |
0.00046 (0.00136) |
1e-05 (4.38e-05) |
0.122 (0.179) |
6e-05 (0.000217) |
0.00556 (0.0127) |
0.024 (0.044) |
| 17q loss | 102 (16%) | 523 |
1e-05 (4.38e-05) |
0.0209 (0.0394) |
0.327 (0.403) |
0.0853 (0.132) |
0.21 (0.277) |
4e-05 (0.000151) |
0.0209 (0.0394) |
0.00051 (0.00148) |
0.442 (0.517) |
0.0102 (0.0213) |
| 18q loss | 257 (41%) | 368 |
1e-05 (4.38e-05) |
0.00598 (0.0136) |
0.955 (0.966) |
0.168 (0.229) |
0.00306 (0.00742) |
0.00042 (0.00126) |
0.0669 (0.107) |
0.00076 (0.00215) |
0.055 (0.0896) |
0.0277 (0.0494) |
| 4p gain | 37 (6%) | 588 |
0.0197 (0.0378) |
0.17 (0.232) |
0.136 (0.194) |
0.817 (0.862) |
0.00537 (0.0123) |
0.00997 (0.021) |
0.218 (0.285) |
0.00768 (0.0168) |
0.186 (0.25) |
0.0193 (0.0373) |
| 11p gain | 98 (16%) | 527 |
1e-05 (4.38e-05) |
0.0016 (0.00415) |
0.661 (0.722) |
0.361 (0.439) |
0.419 (0.495) |
0.0125 (0.0254) |
0.501 (0.574) |
0.00658 (0.0146) |
0.012 (0.0246) |
0.0542 (0.0889) |
| 16p gain | 100 (16%) | 525 |
1e-05 (4.38e-05) |
0.00412 (0.00968) |
0.0901 (0.137) |
0.661 (0.722) |
0.115 (0.17) |
0.00955 (0.0203) |
0.122 (0.179) |
6e-05 (0.000217) |
0.292 (0.364) |
0.00114 (0.00309) |
| 20q gain | 395 (63%) | 230 |
1e-05 (4.38e-05) |
0.0871 (0.133) |
0.391 (0.468) |
0.153 (0.213) |
0.00639 (0.0142) |
1e-05 (4.38e-05) |
0.108 (0.163) |
1e-05 (4.38e-05) |
0.142 (0.202) |
1e-05 (4.38e-05) |
| 2q loss | 49 (8%) | 576 |
1e-05 (4.38e-05) |
0.0599 (0.0964) |
0.824 (0.867) |
0.214 (0.28) |
0.0321 (0.0561) |
0.02 (0.0381) |
0.287 (0.36) |
0.0101 (0.0213) |
0.0678 (0.108) |
0.0189 (0.0367) |
| 16q loss | 167 (27%) | 458 |
1e-05 (4.38e-05) |
0.082 (0.128) |
0.867 (0.901) |
0.168 (0.229) |
0.163 (0.223) |
1e-05 (4.38e-05) |
0.21 (0.277) |
1e-05 (4.38e-05) |
0.0044 (0.0103) |
1e-05 (4.38e-05) |
| 18q gain | 79 (13%) | 546 |
0.00203 (0.00514) |
0.431 (0.507) |
0.991 (0.992) |
0.388 (0.467) |
0.0224 (0.0416) |
0.00983 (0.0208) |
0.0345 (0.0598) |
0.0587 (0.0949) |
0.16 (0.22) |
0.0718 (0.113) |
| 2p loss | 36 (6%) | 589 |
0.00017 (0.000538) |
0.478 (0.553) |
0.0261 (0.0472) |
0.0859 (0.132) |
0.536 (0.611) |
0.0181 (0.0354) |
0.604 (0.671) |
0.0219 (0.0409) |
0.229 (0.297) |
0.0549 (0.0896) |
| 7q loss | 50 (8%) | 575 |
1e-05 (4.38e-05) |
0.083 (0.129) |
0.145 (0.204) |
0.537 (0.612) |
0.258 (0.331) |
0.0045 (0.0105) |
0.024 (0.044) |
0.152 (0.212) |
0.0094 (0.02) |
0.176 (0.238) |
| 8q loss | 59 (9%) | 566 |
1e-05 (4.38e-05) |
0.305 (0.377) |
0.955 (0.966) |
0.0559 (0.091) |
0.0262 (0.0472) |
0.0175 (0.0343) |
0.159 (0.22) |
0.43 (0.507) |
0.652 (0.715) |
0.0314 (0.0551) |
| 4q gain | 30 (5%) | 595 |
0.131 (0.19) |
0.353 (0.431) |
0.125 (0.183) |
0.176 (0.238) |
0.0242 (0.0443) |
0.0874 (0.134) |
0.551 (0.623) |
0.00257 (0.00633) |
0.152 (0.212) |
0.0105 (0.0217) |
| 8q gain | 337 (54%) | 288 |
0.869 (0.902) |
0.00519 (0.012) |
0.435 (0.512) |
0.511 (0.586) |
0.236 (0.305) |
0.438 (0.514) |
0.012 (0.0246) |
0.0101 (0.0213) |
0.464 (0.539) |
0.804 (0.85) |
| 10p gain | 136 (22%) | 489 |
1e-05 (4.38e-05) |
0.0373 (0.0637) |
0.949 (0.963) |
0.845 (0.885) |
0.628 (0.694) |
0.0527 (0.087) |
0.6 (0.668) |
0.00121 (0.00324) |
0.0847 (0.131) |
0.0509 (0.0846) |
| 10q gain | 98 (16%) | 527 |
1e-05 (4.38e-05) |
0.159 (0.22) |
0.902 (0.927) |
0.784 (0.83) |
0.709 (0.763) |
0.00492 (0.0114) |
0.989 (0.992) |
0.0674 (0.107) |
0.0175 (0.0343) |
0.111 (0.166) |
| 1q loss | 47 (8%) | 578 |
1e-05 (4.38e-05) |
0.109 (0.164) |
0.715 (0.769) |
0.14 (0.198) |
0.0531 (0.0875) |
0.0662 (0.106) |
0.0376 (0.0641) |
0.0493 (0.082) |
0.125 (0.183) |
0.177 (0.238) |
| 6q loss | 112 (18%) | 513 |
1e-05 (4.38e-05) |
0.0227 (0.0421) |
0.672 (0.731) |
0.382 (0.46) |
0.133 (0.191) |
0.00222 (0.00553) |
0.344 (0.42) |
0.102 (0.154) |
0.488 (0.561) |
0.145 (0.204) |
| 7p loss | 33 (5%) | 592 |
0.00105 (0.00288) |
0.00993 (0.021) |
0.262 (0.334) |
0.399 (0.476) |
0.739 (0.79) |
0.195 (0.26) |
0.144 (0.203) |
0.248 (0.32) |
0.0366 (0.0629) |
0.44 (0.516) |
| 15q loss | 149 (24%) | 476 |
1e-05 (4.38e-05) |
0.204 (0.271) |
0.301 (0.374) |
0.391 (0.468) |
0.225 (0.293) |
0.0005 (0.00146) |
0.58 (0.648) |
0.0003 (0.000928) |
0.208 (0.275) |
0.611 (0.677) |
| 3p gain | 85 (14%) | 540 |
7e-05 (0.000247) |
0.0452 (0.0759) |
0.324 (0.4) |
0.136 (0.194) |
0.389 (0.467) |
0.19 (0.255) |
0.153 (0.213) |
0.329 (0.405) |
0.273 (0.347) |
0.275 (0.348) |
| 7q gain | 257 (41%) | 368 |
1e-05 (4.38e-05) |
2e-05 (8.24e-05) |
0.556 (0.627) |
0.277 (0.349) |
0.0658 (0.106) |
0.19 (0.255) |
0.468 (0.542) |
0.235 (0.305) |
0.288 (0.36) |
0.337 (0.413) |
| 8p gain | 248 (40%) | 377 |
0.0209 (0.0394) |
0.0266 (0.0477) |
0.888 (0.917) |
0.12 (0.177) |
0.069 (0.109) |
0.152 (0.212) |
0.0909 (0.138) |
0.572 (0.64) |
0.275 (0.348) |
0.657 (0.72) |
| 19p gain | 83 (13%) | 542 |
2e-05 (8.24e-05) |
0.64 (0.705) |
0.148 (0.207) |
0.0483 (0.0807) |
0.732 (0.784) |
0.682 (0.741) |
0.766 (0.814) |
0.573 (0.641) |
0.967 (0.973) |
0.965 (0.973) |
| 18p loss | 187 (30%) | 438 |
1e-05 (4.38e-05) |
0.253 (0.325) |
0.0512 (0.0848) |
0.781 (0.829) |
0.163 (0.223) |
0.441 (0.517) |
0.948 (0.963) |
0.12 (0.177) |
0.024 (0.044) |
0.453 (0.528) |
| 20q loss | 8 (1%) | 617 |
0.137 (0.196) |
0.0672 (0.107) |
0.0574 (0.093) |
0.55 (0.623) |
0.0161 (0.0319) |
0.0301 (0.0531) |
0.0541 (0.0889) |
0.144 (0.204) |
0.648 (0.713) |
0.134 (0.192) |
| 5q gain | 64 (10%) | 561 |
0.00014 (0.000456) |
0.622 (0.688) |
0.89 (0.917) |
0.402 (0.48) |
0.703 (0.761) |
0.926 (0.946) |
0.415 (0.493) |
0.548 (0.621) |
0.294 (0.366) |
0.177 (0.238) |
| 9q gain | 109 (17%) | 516 |
0.00174 (0.00446) |
0.728 (0.781) |
0.374 (0.451) |
0.821 (0.865) |
0.485 (0.56) |
0.941 (0.958) |
0.926 (0.946) |
0.369 (0.447) |
0.557 (0.627) |
0.94 (0.958) |
| 12q gain | 116 (19%) | 509 |
0.00411 (0.00968) |
0.26 (0.333) |
0.985 (0.988) |
0.262 (0.334) |
0.718 (0.772) |
0.636 (0.701) |
0.112 (0.167) |
0.208 (0.275) |
0.132 (0.19) |
0.293 (0.365) |
| 20p loss | 42 (7%) | 583 |
0.00278 (0.0068) |
0.557 (0.627) |
0.093 (0.141) |
0.263 (0.335) |
0.243 (0.313) |
0.107 (0.161) |
0.956 (0.966) |
0.194 (0.26) |
0.487 (0.561) |
0.691 (0.749) |
| 9p gain | 78 (12%) | 547 |
0.276 (0.348) |
0.672 (0.731) |
0.7 (0.759) |
0.519 (0.594) |
0.89 (0.917) |
0.951 (0.964) |
0.849 (0.886) |
0.872 (0.904) |
0.892 (0.917) |
0.706 (0.762) |
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S1. Gene #1: '1p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 1P GAIN MUTATED | 24 | 19 | 37 | 4 |
| 1P GAIN WILD-TYPE | 127 | 79 | 145 | 190 |
Figure S1. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00148 (Fisher's exact test), Q value = 0.0039
Table S2. Gene #1: '1p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 1P GAIN MUTATED | 31 | 34 | 13 |
| 1P GAIN WILD-TYPE | 210 | 127 | 162 |
Figure S2. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 6e-04 (Fisher's exact test), Q value = 0.0017
Table S3. Gene #1: '1p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 1P GAIN MUTATED | 26 | 22 | 9 | 19 | 6 |
| 1P GAIN WILD-TYPE | 105 | 94 | 89 | 102 | 124 |
Figure S3. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0297 (Fisher's exact test), Q value = 0.053
Table S4. Gene #1: '1p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 1P GAIN MUTATED | 31 | 37 | 15 |
| 1P GAIN WILD-TYPE | 136 | 241 | 157 |
Figure S4. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00115 (Fisher's exact test), Q value = 0.0031
Table S5. Gene #1: '1p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 1P GAIN MUTATED | 27 | 21 | 11 | 17 | 7 |
| 1P GAIN WILD-TYPE | 100 | 122 | 153 | 77 | 82 |
Figure S5. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0247 (Fisher's exact test), Q value = 0.045
Table S6. Gene #1: '1p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 1P GAIN MUTATED | 24 | 23 | 13 | 6 | 3 |
| 1P GAIN WILD-TYPE | 99 | 132 | 108 | 41 | 70 |
Figure S6. Get High-res Image Gene #1: '1p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S7. Gene #2: '1q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 1Q GAIN MUTATED | 53 | 37 | 66 | 14 |
| 1Q GAIN WILD-TYPE | 98 | 61 | 116 | 180 |
Figure S7. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S8. Gene #2: '1q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 1Q GAIN MUTATED | 62 | 70 | 28 |
| 1Q GAIN WILD-TYPE | 179 | 91 | 147 |
Figure S8. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00466 (Fisher's exact test), Q value = 0.011
Table S9. Gene #2: '1q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 1Q GAIN MUTATED | 46 | 27 | 28 | 41 | 22 |
| 1Q GAIN WILD-TYPE | 85 | 89 | 70 | 80 | 108 |
Figure S9. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00036 (Fisher's exact test), Q value = 0.0011
Table S10. Gene #2: '1q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 1Q GAIN MUTATED | 63 | 73 | 31 |
| 1Q GAIN WILD-TYPE | 104 | 205 | 141 |
Figure S10. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S11. Gene #2: '1q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 1Q GAIN MUTATED | 49 | 44 | 19 | 37 | 18 |
| 1Q GAIN WILD-TYPE | 78 | 99 | 145 | 57 | 71 |
Figure S11. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00172 (Fisher's exact test), Q value = 0.0044
Table S12. Gene #2: '1q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 1Q GAIN MUTATED | 49 | 43 | 23 | 14 | 13 |
| 1Q GAIN WILD-TYPE | 74 | 112 | 98 | 33 | 60 |
Figure S12. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00084 (Fisher's exact test), Q value = 0.0024
Table S13. Gene #2: '1q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 1Q GAIN MUTATED | 20 | 37 | 25 | 24 | 36 |
| 1Q GAIN WILD-TYPE | 31 | 87 | 119 | 84 | 56 |
Figure S13. Get High-res Image Gene #2: '1q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S14. Gene #3: '2p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 2P GAIN MUTATED | 39 | 23 | 65 | 10 |
| 2P GAIN WILD-TYPE | 112 | 75 | 117 | 184 |
Figure S14. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S15. Gene #3: '2p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 2P GAIN MUTATED | 54 | 60 | 17 |
| 2P GAIN WILD-TYPE | 187 | 101 | 158 |
Figure S15. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 9e-05 (Fisher's exact test), Q value = 0.00031
Table S16. Gene #3: '2p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 2P GAIN MUTATED | 53 | 62 | 18 |
| 2P GAIN WILD-TYPE | 117 | 211 | 135 |
Figure S16. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 8.2e-05
Table S17. Gene #3: '2p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 2P GAIN MUTATED | 33 | 20 | 20 | 46 | 14 |
| 2P GAIN WILD-TYPE | 98 | 96 | 78 | 75 | 116 |
Figure S17. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S18. Gene #3: '2p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 2P GAIN MUTATED | 60 | 58 | 18 |
| 2P GAIN WILD-TYPE | 107 | 220 | 154 |
Figure S18. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S19. Gene #3: '2p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 2P GAIN MUTATED | 36 | 32 | 22 | 37 | 9 |
| 2P GAIN WILD-TYPE | 91 | 111 | 142 | 57 | 80 |
Figure S19. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 5e-05 (Fisher's exact test), Q value = 0.00019
Table S20. Gene #3: '2p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 2P GAIN MUTATED | 46 | 39 | 16 | 7 | 9 |
| 2P GAIN WILD-TYPE | 77 | 116 | 105 | 40 | 64 |
Figure S20. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S21. Gene #3: '2p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 2P GAIN MUTATED | 11 | 38 | 19 | 14 | 35 |
| 2P GAIN WILD-TYPE | 40 | 86 | 125 | 94 | 57 |
Figure S21. Get High-res Image Gene #3: '2p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S22. Gene #4: '2q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 2Q GAIN MUTATED | 35 | 19 | 50 | 9 |
| 2Q GAIN WILD-TYPE | 116 | 79 | 132 | 185 |
Figure S22. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00012
Table S23. Gene #4: '2q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 2Q GAIN MUTATED | 49 | 45 | 15 |
| 2Q GAIN WILD-TYPE | 192 | 116 | 160 |
Figure S23. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00619 (Fisher's exact test), Q value = 0.014
Table S24. Gene #4: '2q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 2Q GAIN MUTATED | 42 | 52 | 17 |
| 2Q GAIN WILD-TYPE | 128 | 221 | 136 |
Figure S24. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00016 (Fisher's exact test), Q value = 0.00051
Table S25. Gene #4: '2q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 2Q GAIN MUTATED | 35 | 15 | 14 | 34 | 13 |
| 2Q GAIN WILD-TYPE | 96 | 101 | 84 | 87 | 117 |
Figure S25. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00044 (Fisher's exact test), Q value = 0.0013
Table S26. Gene #4: '2q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 2Q GAIN MUTATED | 46 | 47 | 19 |
| 2Q GAIN WILD-TYPE | 121 | 231 | 153 |
Figure S26. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00069 (Fisher's exact test), Q value = 0.002
Table S27. Gene #4: '2q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 2Q GAIN MUTATED | 31 | 28 | 19 | 26 | 8 |
| 2Q GAIN WILD-TYPE | 96 | 115 | 145 | 68 | 81 |
Figure S27. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00858 (Fisher's exact test), Q value = 0.019
Table S28. Gene #4: '2q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 2Q GAIN MUTATED | 36 | 32 | 19 | 7 | 7 |
| 2Q GAIN WILD-TYPE | 87 | 123 | 102 | 40 | 66 |
Figure S28. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.0257 (Fisher's exact test), Q value = 0.047
Table S29. Gene #4: '2q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 2Q GAIN MUTATED | 11 | 29 | 21 | 14 | 26 |
| 2Q GAIN WILD-TYPE | 40 | 95 | 123 | 94 | 66 |
Figure S29. Get High-res Image Gene #4: '2q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 7e-05 (Fisher's exact test), Q value = 0.00025
Table S30. Gene #5: '3p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 3P GAIN MUTATED | 17 | 24 | 32 | 12 |
| 3P GAIN WILD-TYPE | 134 | 74 | 150 | 182 |
Figure S30. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0452 (Fisher's exact test), Q value = 0.076
Table S31. Gene #5: '3p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 3P GAIN MUTATED | 35 | 28 | 15 |
| 3P GAIN WILD-TYPE | 206 | 133 | 160 |
Figure S31. Get High-res Image Gene #5: '3p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S32. Gene #6: '3q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 3Q GAIN MUTATED | 26 | 41 | 84 | 19 |
| 3Q GAIN WILD-TYPE | 125 | 57 | 98 | 175 |
Figure S32. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S33. Gene #6: '3q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 3Q GAIN MUTATED | 60 | 66 | 32 |
| 3Q GAIN WILD-TYPE | 181 | 95 | 143 |
Figure S33. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00039 (Fisher's exact test), Q value = 0.0012
Table S34. Gene #6: '3q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 3Q GAIN MUTATED | 65 | 70 | 29 |
| 3Q GAIN WILD-TYPE | 105 | 203 | 124 |
Figure S34. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00013 (Fisher's exact test), Q value = 0.00042
Table S35. Gene #6: '3q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 3Q GAIN MUTATED | 34 | 41 | 17 | 48 | 24 |
| 3Q GAIN WILD-TYPE | 97 | 75 | 81 | 73 | 106 |
Figure S35. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S36. Gene #6: '3q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 3Q GAIN MUTATED | 70 | 63 | 34 |
| 3Q GAIN WILD-TYPE | 97 | 215 | 138 |
Figure S36. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S37. Gene #6: '3q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 3Q GAIN MUTATED | 38 | 29 | 40 | 46 | 14 |
| 3Q GAIN WILD-TYPE | 89 | 114 | 124 | 48 | 75 |
Figure S37. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 6e-05 (Fisher's exact test), Q value = 0.00022
Table S38. Gene #6: '3q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 3Q GAIN MUTATED | 53 | 38 | 22 | 10 | 14 |
| 3Q GAIN WILD-TYPE | 70 | 117 | 99 | 37 | 59 |
Figure S38. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S39. Gene #6: '3q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 3Q GAIN MUTATED | 10 | 40 | 28 | 14 | 45 |
| 3Q GAIN WILD-TYPE | 41 | 84 | 116 | 94 | 47 |
Figure S39. Get High-res Image Gene #6: '3q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0197 (Fisher's exact test), Q value = 0.038
Table S40. Gene #7: '4p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 4P GAIN MUTATED | 7 | 7 | 18 | 5 |
| 4P GAIN WILD-TYPE | 144 | 91 | 164 | 189 |
Figure S40. Get High-res Image Gene #7: '4p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00537 (Fisher's exact test), Q value = 0.012
Table S41. Gene #7: '4p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 4P GAIN MUTATED | 15 | 19 | 2 |
| 4P GAIN WILD-TYPE | 155 | 254 | 151 |
Figure S41. Get High-res Image Gene #7: '4p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00997 (Fisher's exact test), Q value = 0.021
Table S42. Gene #7: '4p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 4P GAIN MUTATED | 8 | 10 | 5 | 12 | 1 |
| 4P GAIN WILD-TYPE | 123 | 106 | 93 | 109 | 129 |
Figure S42. Get High-res Image Gene #7: '4p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00768 (Fisher's exact test), Q value = 0.017
Table S43. Gene #7: '4p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 4P GAIN MUTATED | 4 | 13 | 8 | 11 | 1 |
| 4P GAIN WILD-TYPE | 123 | 130 | 156 | 83 | 88 |
Figure S43. Get High-res Image Gene #7: '4p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0193 (Fisher's exact test), Q value = 0.037
Table S44. Gene #7: '4p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 4P GAIN MUTATED | 1 | 11 | 8 | 2 | 11 |
| 4P GAIN WILD-TYPE | 50 | 113 | 136 | 106 | 81 |
Figure S44. Get High-res Image Gene #7: '4p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.0242 (Fisher's exact test), Q value = 0.044
Table S45. Gene #8: '4q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 4Q GAIN MUTATED | 12 | 16 | 2 |
| 4Q GAIN WILD-TYPE | 158 | 257 | 151 |
Figure S45. Get High-res Image Gene #8: '4q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00257 (Fisher's exact test), Q value = 0.0063
Table S46. Gene #8: '4q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 4Q GAIN MUTATED | 2 | 11 | 8 | 9 | 0 |
| 4Q GAIN WILD-TYPE | 125 | 132 | 156 | 85 | 89 |
Figure S46. Get High-res Image Gene #8: '4q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0105 (Fisher's exact test), Q value = 0.022
Table S47. Gene #8: '4q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 4Q GAIN MUTATED | 0 | 9 | 7 | 1 | 9 |
| 4Q GAIN WILD-TYPE | 51 | 115 | 137 | 107 | 83 |
Figure S47. Get High-res Image Gene #8: '4q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S48. Gene #9: '5p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 5P GAIN MUTATED | 49 | 23 | 91 | 16 |
| 5P GAIN WILD-TYPE | 102 | 75 | 91 | 178 |
Figure S48. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S49. Gene #9: '5p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 5P GAIN MUTATED | 51 | 83 | 31 |
| 5P GAIN WILD-TYPE | 190 | 78 | 144 |
Figure S49. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0198 (Fisher's exact test), Q value = 0.038
Table S50. Gene #9: '5p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 273 | 110 | 99 |
| 5P GAIN MUTATED | 89 | 23 | 21 |
| 5P GAIN WILD-TYPE | 184 | 87 | 78 |
Figure S50. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 6e-05 (Fisher's exact test), Q value = 0.00022
Table S51. Gene #9: '5p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 5P GAIN MUTATED | 70 | 73 | 30 |
| 5P GAIN WILD-TYPE | 100 | 200 | 123 |
Figure S51. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S52. Gene #9: '5p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 5P GAIN MUTATED | 53 | 22 | 22 | 55 | 21 |
| 5P GAIN WILD-TYPE | 78 | 94 | 76 | 66 | 109 |
Figure S52. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S53. Gene #9: '5p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 5P GAIN MUTATED | 75 | 66 | 37 |
| 5P GAIN WILD-TYPE | 92 | 212 | 135 |
Figure S53. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S54. Gene #9: '5p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 5P GAIN MUTATED | 53 | 29 | 34 | 50 | 12 |
| 5P GAIN WILD-TYPE | 74 | 114 | 130 | 44 | 77 |
Figure S54. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 5e-05 (Fisher's exact test), Q value = 0.00019
Table S55. Gene #9: '5p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 5P GAIN MUTATED | 58 | 42 | 23 | 13 | 19 |
| 5P GAIN WILD-TYPE | 65 | 113 | 98 | 34 | 54 |
Figure S55. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S56. Gene #9: '5p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 5P GAIN MUTATED | 18 | 34 | 33 | 20 | 50 |
| 5P GAIN WILD-TYPE | 33 | 90 | 111 | 88 | 42 |
Figure S56. Get High-res Image Gene #9: '5p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00014 (Fisher's exact test), Q value = 0.00046
Table S57. Gene #10: '5q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 5Q GAIN MUTATED | 17 | 7 | 32 | 8 |
| 5Q GAIN WILD-TYPE | 134 | 91 | 150 | 186 |
Figure S57. Get High-res Image Gene #10: '5q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S58. Gene #11: '6p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 6P GAIN MUTATED | 54 | 28 | 29 | 7 |
| 6P GAIN WILD-TYPE | 97 | 70 | 153 | 187 |
Figure S58. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S59. Gene #11: '6p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 6P GAIN MUTATED | 38 | 51 | 17 |
| 6P GAIN WILD-TYPE | 203 | 110 | 158 |
Figure S59. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0239 (Fisher's exact test), Q value = 0.044
Table S60. Gene #11: '6p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 145 | 137 | 136 | 64 |
| 6P GAIN MUTATED | 26 | 33 | 15 | 15 |
| 6P GAIN WILD-TYPE | 119 | 104 | 121 | 49 |
Figure S60. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #3: 'RPPA_CNMF'
P value = 0.031 (Fisher's exact test), Q value = 0.054
Table S61. Gene #11: '6p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 273 | 110 | 99 |
| 6P GAIN MUTATED | 53 | 26 | 10 |
| 6P GAIN WILD-TYPE | 220 | 84 | 89 |
Figure S61. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 0.0251 (Fisher's exact test), Q value = 0.046
Table S62. Gene #11: '6p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 6P GAIN MUTATED | 33 | 63 | 19 |
| 6P GAIN WILD-TYPE | 137 | 210 | 134 |
Figure S62. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S63. Gene #11: '6p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 6P GAIN MUTATED | 40 | 24 | 20 | 24 | 7 |
| 6P GAIN WILD-TYPE | 91 | 92 | 78 | 97 | 123 |
Figure S63. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0104 (Fisher's exact test), Q value = 0.022
Table S64. Gene #11: '6p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 6P GAIN MUTATED | 43 | 52 | 22 |
| 6P GAIN WILD-TYPE | 124 | 226 | 150 |
Figure S64. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S65. Gene #11: '6p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 6P GAIN MUTATED | 49 | 29 | 16 | 16 | 7 |
| 6P GAIN WILD-TYPE | 78 | 114 | 148 | 78 | 82 |
Figure S65. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00442 (Fisher's exact test), Q value = 0.01
Table S66. Gene #11: '6p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 6P GAIN MUTATED | 33 | 34 | 11 | 8 | 11 |
| 6P GAIN WILD-TYPE | 90 | 121 | 110 | 39 | 62 |
Figure S66. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 8.2e-05
Table S67. Gene #11: '6p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 6P GAIN MUTATED | 20 | 33 | 15 | 13 | 16 |
| 6P GAIN WILD-TYPE | 31 | 91 | 129 | 95 | 76 |
Figure S67. Get High-res Image Gene #11: '6p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S68. Gene #12: '6q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 6Q GAIN MUTATED | 47 | 20 | 25 | 8 |
| 6Q GAIN WILD-TYPE | 104 | 78 | 157 | 186 |
Figure S68. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00013 (Fisher's exact test), Q value = 0.00042
Table S69. Gene #12: '6q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 6Q GAIN MUTATED | 37 | 39 | 13 |
| 6Q GAIN WILD-TYPE | 204 | 122 | 162 |
Figure S69. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0419 (Fisher's exact test), Q value = 0.071
Table S70. Gene #12: '6q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 145 | 137 | 136 | 64 |
| 6Q GAIN MUTATED | 23 | 28 | 13 | 14 |
| 6Q GAIN WILD-TYPE | 122 | 109 | 123 | 50 |
Figure S70. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
P value = 0.0373 (Fisher's exact test), Q value = 0.064
Table S71. Gene #12: '6q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 273 | 110 | 99 |
| 6Q GAIN MUTATED | 49 | 21 | 8 |
| 6Q GAIN WILD-TYPE | 224 | 89 | 91 |
Figure S71. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 0.0103 (Fisher's exact test), Q value = 0.021
Table S72. Gene #12: '6q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 6Q GAIN MUTATED | 26 | 57 | 15 |
| 6Q GAIN WILD-TYPE | 144 | 216 | 138 |
Figure S72. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00054 (Fisher's exact test), Q value = 0.0016
Table S73. Gene #12: '6q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 6Q GAIN MUTATED | 31 | 21 | 18 | 21 | 7 |
| 6Q GAIN WILD-TYPE | 100 | 95 | 80 | 100 | 123 |
Figure S73. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S74. Gene #12: '6q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 6Q GAIN MUTATED | 37 | 29 | 13 | 14 | 6 |
| 6Q GAIN WILD-TYPE | 90 | 114 | 151 | 80 | 83 |
Figure S74. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0234 (Fisher's exact test), Q value = 0.043
Table S75. Gene #12: '6q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 6Q GAIN MUTATED | 23 | 33 | 10 | 8 | 8 |
| 6Q GAIN WILD-TYPE | 100 | 122 | 111 | 39 | 65 |
Figure S75. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S76. Gene #12: '6q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 6Q GAIN MUTATED | 14 | 33 | 10 | 11 | 14 |
| 6Q GAIN WILD-TYPE | 37 | 91 | 134 | 97 | 78 |
Figure S76. Get High-res Image Gene #12: '6q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S77. Gene #13: '7p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 7P GAIN MUTATED | 91 | 42 | 126 | 49 |
| 7P GAIN WILD-TYPE | 60 | 56 | 56 | 145 |
Figure S77. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S78. Gene #13: '7p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 7P GAIN MUTATED | 134 | 96 | 58 |
| 7P GAIN WILD-TYPE | 107 | 65 | 117 |
Figure S78. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00025 (Fisher's exact test), Q value = 0.00078
Table S79. Gene #13: '7p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 7P GAIN MUTATED | 92 | 150 | 54 |
| 7P GAIN WILD-TYPE | 78 | 123 | 99 |
Figure S79. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00377 (Fisher's exact test), Q value = 0.0089
Table S80. Gene #13: '7p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 7P GAIN MUTATED | 76 | 51 | 51 | 69 | 49 |
| 7P GAIN WILD-TYPE | 55 | 65 | 47 | 52 | 81 |
Figure S80. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.003 (Fisher's exact test), Q value = 0.0073
Table S81. Gene #13: '7p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 7P GAIN MUTATED | 94 | 142 | 66 |
| 7P GAIN WILD-TYPE | 73 | 136 | 106 |
Figure S81. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00012 (Fisher's exact test), Q value = 4e-04
Table S82. Gene #13: '7p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 7P GAIN MUTATED | 71 | 82 | 69 | 52 | 28 |
| 7P GAIN WILD-TYPE | 56 | 61 | 95 | 42 | 61 |
Figure S82. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.017 (Fisher's exact test), Q value = 0.034
Table S83. Gene #13: '7p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 7P GAIN MUTATED | 72 | 83 | 46 | 24 | 33 |
| 7P GAIN WILD-TYPE | 51 | 72 | 75 | 23 | 40 |
Figure S83. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00908 (Fisher's exact test), Q value = 0.019
Table S84. Gene #13: '7p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 7P GAIN MUTATED | 30 | 71 | 66 | 40 | 51 |
| 7P GAIN WILD-TYPE | 21 | 53 | 78 | 68 | 41 |
Figure S84. Get High-res Image Gene #13: '7p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S85. Gene #14: '7q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 7Q GAIN MUTATED | 76 | 32 | 104 | 45 |
| 7Q GAIN WILD-TYPE | 75 | 66 | 78 | 149 |
Figure S85. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 8.2e-05
Table S86. Gene #14: '7q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 7Q GAIN MUTATED | 110 | 79 | 47 |
| 7Q GAIN WILD-TYPE | 131 | 82 | 128 |
Figure S86. Get High-res Image Gene #14: '7q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0209 (Fisher's exact test), Q value = 0.039
Table S87. Gene #15: '8p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 8P GAIN MUTATED | 57 | 39 | 59 | 93 |
| 8P GAIN WILD-TYPE | 94 | 59 | 123 | 101 |
Figure S87. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0266 (Fisher's exact test), Q value = 0.048
Table S88. Gene #15: '8p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 8P GAIN MUTATED | 108 | 60 | 56 |
| 8P GAIN WILD-TYPE | 133 | 101 | 119 |
Figure S88. Get High-res Image Gene #15: '8p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00519 (Fisher's exact test), Q value = 0.012
Table S89. Gene #16: '8q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 8Q GAIN MUTATED | 140 | 94 | 76 |
| 8Q GAIN WILD-TYPE | 101 | 67 | 99 |
Figure S89. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.012 (Fisher's exact test), Q value = 0.025
Table S90. Gene #16: '8q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 8Q GAIN MUTATED | 95 | 161 | 76 |
| 8Q GAIN WILD-TYPE | 72 | 117 | 96 |
Figure S90. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.0101 (Fisher's exact test), Q value = 0.021
Table S91. Gene #16: '8q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 8Q GAIN MUTATED | 75 | 89 | 73 | 53 | 42 |
| 8Q GAIN WILD-TYPE | 52 | 54 | 91 | 41 | 47 |
Figure S91. Get High-res Image Gene #16: '8q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00174 (Fisher's exact test), Q value = 0.0045
Table S92. Gene #18: '9q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 9Q GAIN MUTATED | 33 | 9 | 43 | 24 |
| 9Q GAIN WILD-TYPE | 118 | 89 | 139 | 170 |
Figure S92. Get High-res Image Gene #18: '9q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S93. Gene #19: '10p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 10P GAIN MUTATED | 52 | 42 | 32 | 10 |
| 10P GAIN WILD-TYPE | 99 | 56 | 150 | 184 |
Figure S93. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0373 (Fisher's exact test), Q value = 0.064
Table S94. Gene #19: '10p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 10P GAIN MUTATED | 62 | 35 | 27 |
| 10P GAIN WILD-TYPE | 179 | 126 | 148 |
Figure S94. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00121 (Fisher's exact test), Q value = 0.0032
Table S95. Gene #19: '10p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 10P GAIN MUTATED | 43 | 33 | 24 | 14 | 19 |
| 10P GAIN WILD-TYPE | 84 | 110 | 140 | 80 | 70 |
Figure S95. Get High-res Image Gene #19: '10p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S96. Gene #20: '10q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 10Q GAIN MUTATED | 31 | 39 | 17 | 11 |
| 10Q GAIN WILD-TYPE | 120 | 59 | 165 | 183 |
Figure S96. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00492 (Fisher's exact test), Q value = 0.011
Table S97. Gene #20: '10q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 10Q GAIN MUTATED | 28 | 28 | 9 | 13 | 17 |
| 10Q GAIN WILD-TYPE | 103 | 88 | 89 | 108 | 113 |
Figure S97. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0175 (Fisher's exact test), Q value = 0.034
Table S98. Gene #20: '10q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 10Q GAIN MUTATED | 17 | 37 | 16 | 5 | 6 |
| 10Q GAIN WILD-TYPE | 106 | 118 | 105 | 42 | 67 |
Figure S98. Get High-res Image Gene #20: '10q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S99. Gene #21: '11p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 11P GAIN MUTATED | 38 | 18 | 35 | 7 |
| 11P GAIN WILD-TYPE | 113 | 80 | 147 | 187 |
Figure S99. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0016 (Fisher's exact test), Q value = 0.0042
Table S100. Gene #21: '11p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 11P GAIN MUTATED | 32 | 40 | 20 |
| 11P GAIN WILD-TYPE | 209 | 121 | 155 |
Figure S100. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0125 (Fisher's exact test), Q value = 0.025
Table S101. Gene #21: '11p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 11P GAIN MUTATED | 30 | 17 | 15 | 22 | 10 |
| 11P GAIN WILD-TYPE | 101 | 99 | 83 | 99 | 120 |
Figure S101. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00658 (Fisher's exact test), Q value = 0.015
Table S102. Gene #21: '11p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 11P GAIN MUTATED | 30 | 22 | 19 | 17 | 6 |
| 11P GAIN WILD-TYPE | 97 | 121 | 145 | 77 | 83 |
Figure S102. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.012 (Fisher's exact test), Q value = 0.025
Table S103. Gene #21: '11p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 11P GAIN MUTATED | 24 | 29 | 13 | 10 | 4 |
| 11P GAIN WILD-TYPE | 99 | 126 | 108 | 37 | 69 |
Figure S103. Get High-res Image Gene #21: '11p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S104. Gene #22: '11q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 11Q GAIN MUTATED | 42 | 18 | 32 | 10 |
| 11Q GAIN WILD-TYPE | 109 | 80 | 150 | 184 |
Figure S104. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0373 (Fisher's exact test), Q value = 0.064
Table S105. Gene #22: '11q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 11Q GAIN MUTATED | 38 | 35 | 20 |
| 11Q GAIN WILD-TYPE | 203 | 126 | 155 |
Figure S105. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00109 (Fisher's exact test), Q value = 0.003
Table S106. Gene #22: '11q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 11Q GAIN MUTATED | 35 | 20 | 18 | 16 | 10 |
| 11Q GAIN WILD-TYPE | 96 | 96 | 80 | 105 | 120 |
Figure S106. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00132 (Fisher's exact test), Q value = 0.0035
Table S107. Gene #22: '11q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 11Q GAIN MUTATED | 32 | 26 | 25 | 11 | 5 |
| 11Q GAIN WILD-TYPE | 95 | 117 | 139 | 83 | 84 |
Figure S107. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0032 (Fisher's exact test), Q value = 0.0077
Table S108. Gene #22: '11q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 11Q GAIN MUTATED | 21 | 36 | 11 | 9 | 5 |
| 11Q GAIN WILD-TYPE | 102 | 119 | 110 | 38 | 68 |
Figure S108. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00128 (Fisher's exact test), Q value = 0.0034
Table S109. Gene #22: '11q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 11Q GAIN MUTATED | 14 | 29 | 20 | 8 | 11 |
| 11Q GAIN WILD-TYPE | 37 | 95 | 124 | 100 | 81 |
Figure S109. Get High-res Image Gene #22: '11q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S110. Gene #23: '12p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 12P GAIN MUTATED | 29 | 31 | 66 | 23 |
| 12P GAIN WILD-TYPE | 122 | 67 | 116 | 171 |
Figure S110. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.00028
Table S111. Gene #23: '12p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 12P GAIN MUTATED | 49 | 61 | 34 |
| 12P GAIN WILD-TYPE | 192 | 100 | 141 |
Figure S111. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.022 (Fisher's exact test), Q value = 0.041
Table S112. Gene #23: '12p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 12P GAIN MUTATED | 55 | 59 | 32 |
| 12P GAIN WILD-TYPE | 115 | 214 | 121 |
Figure S112. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00195 (Fisher's exact test), Q value = 0.005
Table S113. Gene #23: '12p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 12P GAIN MUTATED | 37 | 22 | 22 | 44 | 21 |
| 12P GAIN WILD-TYPE | 94 | 94 | 76 | 77 | 109 |
Figure S113. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00032 (Fisher's exact test), Q value = 0.00098
Table S114. Gene #23: '12p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 12P GAIN MUTATED | 59 | 58 | 30 |
| 12P GAIN WILD-TYPE | 108 | 220 | 142 |
Figure S114. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 4e-04 (Fisher's exact test), Q value = 0.0012
Table S115. Gene #23: '12p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 12P GAIN MUTATED | 28 | 32 | 36 | 39 | 12 |
| 12P GAIN WILD-TYPE | 99 | 111 | 128 | 55 | 77 |
Figure S115. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00065 (Fisher's exact test), Q value = 0.0019
Table S116. Gene #23: '12p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 12P GAIN MUTATED | 47 | 39 | 21 | 6 | 15 |
| 12P GAIN WILD-TYPE | 76 | 116 | 100 | 41 | 58 |
Figure S116. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.00022
Table S117. Gene #23: '12p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 12P GAIN MUTATED | 11 | 30 | 35 | 13 | 39 |
| 12P GAIN WILD-TYPE | 40 | 94 | 109 | 95 | 53 |
Figure S117. Get High-res Image Gene #23: '12p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00411 (Fisher's exact test), Q value = 0.0097
Table S118. Gene #24: '12q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 12Q GAIN MUTATED | 26 | 29 | 37 | 24 |
| 12Q GAIN WILD-TYPE | 125 | 69 | 145 | 170 |
Figure S118. Get High-res Image Gene #24: '12q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S119. Gene #25: '13q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 13Q GAIN MUTATED | 109 | 10 | 46 | 32 |
| 13Q GAIN WILD-TYPE | 42 | 88 | 136 | 162 |
Figure S119. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0323 (Fisher's exact test), Q value = 0.056
Table S120. Gene #25: '13q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 13Q GAIN MUTATED | 83 | 55 | 41 |
| 13Q GAIN WILD-TYPE | 158 | 106 | 134 |
Figure S120. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00012
Table S121. Gene #25: '13q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 13Q GAIN MUTATED | 37 | 113 | 38 |
| 13Q GAIN WILD-TYPE | 133 | 160 | 115 |
Figure S121. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S122. Gene #25: '13q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 13Q GAIN MUTATED | 54 | 33 | 50 | 21 | 30 |
| 13Q GAIN WILD-TYPE | 77 | 83 | 48 | 100 | 100 |
Figure S122. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0127 (Fisher's exact test), Q value = 0.026
Table S123. Gene #25: '13q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 13Q GAIN MUTATED | 47 | 103 | 42 |
| 13Q GAIN WILD-TYPE | 120 | 175 | 130 |
Figure S123. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S124. Gene #25: '13q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 13Q GAIN MUTATED | 62 | 68 | 29 | 9 | 24 |
| 13Q GAIN WILD-TYPE | 65 | 75 | 135 | 85 | 65 |
Figure S124. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0126 (Fisher's exact test), Q value = 0.026
Table S125. Gene #25: '13q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 13Q GAIN MUTATED | 33 | 58 | 24 | 18 | 24 |
| 13Q GAIN WILD-TYPE | 90 | 97 | 97 | 29 | 49 |
Figure S125. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S126. Gene #25: '13q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 13Q GAIN MUTATED | 27 | 47 | 39 | 35 | 9 |
| 13Q GAIN WILD-TYPE | 24 | 77 | 105 | 73 | 83 |
Figure S126. Get High-res Image Gene #25: '13q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S127. Gene #26: '14q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 14Q GAIN MUTATED | 14 | 7 | 50 | 5 |
| 14Q GAIN WILD-TYPE | 137 | 91 | 132 | 189 |
Figure S127. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.00028
Table S128. Gene #26: '14q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 14Q GAIN MUTATED | 22 | 38 | 13 |
| 14Q GAIN WILD-TYPE | 219 | 123 | 162 |
Figure S128. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S129. Gene #26: '14q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 14Q GAIN MUTATED | 41 | 25 | 9 |
| 14Q GAIN WILD-TYPE | 129 | 248 | 144 |
Figure S129. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S130. Gene #26: '14q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 14Q GAIN MUTATED | 16 | 8 | 7 | 38 | 6 |
| 14Q GAIN WILD-TYPE | 115 | 108 | 91 | 83 | 124 |
Figure S130. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S131. Gene #26: '14q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 14Q GAIN MUTATED | 40 | 20 | 15 |
| 14Q GAIN WILD-TYPE | 127 | 258 | 157 |
Figure S131. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S132. Gene #26: '14q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 14Q GAIN MUTATED | 10 | 17 | 7 | 34 | 7 |
| 14Q GAIN WILD-TYPE | 117 | 126 | 157 | 60 | 82 |
Figure S132. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 6e-05 (Fisher's exact test), Q value = 0.00022
Table S133. Gene #26: '14q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 14Q GAIN MUTATED | 30 | 15 | 14 | 8 | 1 |
| 14Q GAIN WILD-TYPE | 93 | 140 | 107 | 39 | 72 |
Figure S133. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S134. Gene #26: '14q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 14Q GAIN MUTATED | 7 | 14 | 6 | 7 | 34 |
| 14Q GAIN WILD-TYPE | 44 | 110 | 138 | 101 | 58 |
Figure S134. Get High-res Image Gene #26: '14q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S135. Gene #27: '15q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 15Q GAIN MUTATED | 21 | 19 | 25 | 2 |
| 15Q GAIN WILD-TYPE | 130 | 79 | 157 | 192 |
Figure S135. Get High-res Image Gene #27: '15q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0157 (Fisher's exact test), Q value = 0.031
Table S136. Gene #27: '15q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 15Q GAIN MUTATED | 29 | 24 | 10 |
| 15Q GAIN WILD-TYPE | 212 | 137 | 165 |
Figure S136. Get High-res Image Gene #27: '15q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00255 (Fisher's exact test), Q value = 0.0063
Table S137. Gene #27: '15q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 15Q GAIN MUTATED | 25 | 32 | 6 |
| 15Q GAIN WILD-TYPE | 145 | 241 | 147 |
Figure S137. Get High-res Image Gene #27: '15q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0013 (Fisher's exact test), Q value = 0.0034
Table S138. Gene #27: '15q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 15Q GAIN MUTATED | 16 | 15 | 9 | 20 | 3 |
| 15Q GAIN WILD-TYPE | 115 | 101 | 89 | 101 | 127 |
Figure S138. Get High-res Image Gene #27: '15q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0372 (Fisher's exact test), Q value = 0.064
Table S139. Gene #27: '15q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 15Q GAIN MUTATED | 25 | 29 | 11 |
| 15Q GAIN WILD-TYPE | 142 | 249 | 161 |
Figure S139. Get High-res Image Gene #27: '15q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.0192 (Fisher's exact test), Q value = 0.037
Table S140. Gene #27: '15q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 15Q GAIN MUTATED | 22 | 19 | 6 | 3 | 7 |
| 15Q GAIN WILD-TYPE | 101 | 136 | 115 | 44 | 66 |
Figure S140. Get High-res Image Gene #27: '15q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00131 (Fisher's exact test), Q value = 0.0035
Table S141. Gene #27: '15q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 15Q GAIN MUTATED | 4 | 25 | 9 | 6 | 13 |
| 15Q GAIN WILD-TYPE | 47 | 99 | 135 | 102 | 79 |
Figure S141. Get High-res Image Gene #27: '15q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S142. Gene #28: '16p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 16P GAIN MUTATED | 20 | 18 | 52 | 10 |
| 16P GAIN WILD-TYPE | 131 | 80 | 130 | 184 |
Figure S142. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00412 (Fisher's exact test), Q value = 0.0097
Table S143. Gene #28: '16p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 16P GAIN MUTATED | 27 | 38 | 26 |
| 16P GAIN WILD-TYPE | 214 | 123 | 149 |
Figure S143. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00955 (Fisher's exact test), Q value = 0.02
Table S144. Gene #28: '16p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 16P GAIN MUTATED | 21 | 19 | 12 | 32 | 13 |
| 16P GAIN WILD-TYPE | 110 | 97 | 86 | 89 | 117 |
Figure S144. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 6e-05 (Fisher's exact test), Q value = 0.00022
Table S145. Gene #28: '16p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 16P GAIN MUTATED | 23 | 12 | 22 | 30 | 11 |
| 16P GAIN WILD-TYPE | 104 | 131 | 142 | 64 | 78 |
Figure S145. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00114 (Fisher's exact test), Q value = 0.0031
Table S146. Gene #28: '16p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 16P GAIN MUTATED | 6 | 15 | 21 | 10 | 28 |
| 16P GAIN WILD-TYPE | 45 | 109 | 123 | 98 | 64 |
Figure S146. Get High-res Image Gene #28: '16p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S147. Gene #29: '16q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 16Q GAIN MUTATED | 17 | 11 | 49 | 9 |
| 16Q GAIN WILD-TYPE | 134 | 87 | 133 | 185 |
Figure S147. Get High-res Image Gene #29: '16q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00111 (Fisher's exact test), Q value = 0.003
Table S148. Gene #29: '16q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 16Q GAIN MUTATED | 23 | 36 | 20 |
| 16Q GAIN WILD-TYPE | 218 | 125 | 155 |
Figure S148. Get High-res Image Gene #29: '16q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00624 (Fisher's exact test), Q value = 0.014
Table S149. Gene #29: '16q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 16Q GAIN MUTATED | 36 | 32 | 15 |
| 16Q GAIN WILD-TYPE | 134 | 241 | 138 |
Figure S149. Get High-res Image Gene #29: '16q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00018 (Fisher's exact test), Q value = 0.00057
Table S150. Gene #29: '16q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 16Q GAIN MUTATED | 18 | 12 | 10 | 33 | 10 |
| 16Q GAIN WILD-TYPE | 113 | 104 | 88 | 88 | 120 |
Figure S150. Get High-res Image Gene #29: '16q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00328 (Fisher's exact test), Q value = 0.0079
Table S151. Gene #29: '16q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 16Q GAIN MUTATED | 35 | 26 | 23 |
| 16Q GAIN WILD-TYPE | 132 | 252 | 149 |
Figure S151. Get High-res Image Gene #29: '16q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
Table S152. Gene #29: '16q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 16Q GAIN MUTATED | 15 | 13 | 17 | 30 | 9 |
| 16Q GAIN WILD-TYPE | 112 | 130 | 147 | 64 | 80 |
Figure S152. Get High-res Image Gene #29: '16q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00688 (Fisher's exact test), Q value = 0.015
Table S153. Gene #29: '16q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 16Q GAIN MUTATED | 29 | 16 | 13 | 4 | 6 |
| 16Q GAIN WILD-TYPE | 94 | 139 | 108 | 43 | 67 |
Figure S153. Get High-res Image Gene #29: '16q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00012
Table S154. Gene #29: '16q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 16Q GAIN MUTATED | 5 | 11 | 17 | 7 | 28 |
| 16Q GAIN WILD-TYPE | 46 | 113 | 127 | 101 | 64 |
Figure S154. Get High-res Image Gene #29: '16q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S155. Gene #30: '17p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 17P GAIN MUTATED | 17 | 10 | 31 | 3 |
| 17P GAIN WILD-TYPE | 134 | 88 | 151 | 191 |
Figure S155. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00344 (Fisher's exact test), Q value = 0.0082
Table S156. Gene #30: '17p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 17P GAIN MUTATED | 22 | 26 | 9 |
| 17P GAIN WILD-TYPE | 219 | 135 | 166 |
Figure S156. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0167 (Fisher's exact test), Q value = 0.033
Table S157. Gene #30: '17p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 17P GAIN MUTATED | 25 | 26 | 8 |
| 17P GAIN WILD-TYPE | 145 | 247 | 145 |
Figure S157. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.021 (Fisher's exact test), Q value = 0.039
Table S158. Gene #30: '17p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 17P GAIN MUTATED | 18 | 9 | 5 | 19 | 8 |
| 17P GAIN WILD-TYPE | 113 | 107 | 93 | 102 | 122 |
Figure S158. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
Table S159. Gene #30: '17p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 17P GAIN MUTATED | 32 | 15 | 13 |
| 17P GAIN WILD-TYPE | 135 | 263 | 159 |
Figure S159. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.0195 (Fisher's exact test), Q value = 0.037
Table S160. Gene #30: '17p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 17P GAIN MUTATED | 14 | 9 | 13 | 18 | 6 |
| 17P GAIN WILD-TYPE | 113 | 134 | 151 | 76 | 83 |
Figure S160. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00596 (Fisher's exact test), Q value = 0.014
Table S161. Gene #30: '17p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 17P GAIN MUTATED | 23 | 10 | 7 | 5 | 5 |
| 17P GAIN WILD-TYPE | 100 | 145 | 114 | 42 | 68 |
Figure S161. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.0013 (Fisher's exact test), Q value = 0.0034
Table S162. Gene #30: '17p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 17P GAIN MUTATED | 7 | 10 | 9 | 5 | 19 |
| 17P GAIN WILD-TYPE | 44 | 114 | 135 | 103 | 73 |
Figure S162. Get High-res Image Gene #30: '17p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S163. Gene #31: '17q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 17Q GAIN MUTATED | 33 | 21 | 48 | 6 |
| 17Q GAIN WILD-TYPE | 118 | 77 | 134 | 188 |
Figure S163. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00781 (Fisher's exact test), Q value = 0.017
Table S164. Gene #31: '17q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 17Q GAIN MUTATED | 47 | 37 | 19 |
| 17Q GAIN WILD-TYPE | 194 | 124 | 156 |
Figure S164. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0135 (Fisher's exact test), Q value = 0.027
Table S165. Gene #31: '17q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 17Q GAIN MUTATED | 40 | 47 | 17 |
| 17Q GAIN WILD-TYPE | 130 | 226 | 136 |
Figure S165. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0179 (Fisher's exact test), Q value = 0.035
Table S166. Gene #31: '17q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 17Q GAIN MUTATED | 32 | 20 | 10 | 26 | 16 |
| 17Q GAIN WILD-TYPE | 99 | 96 | 88 | 95 | 114 |
Figure S166. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00383 (Fisher's exact test), Q value = 0.0091
Table S167. Gene #31: '17q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 17Q GAIN MUTATED | 43 | 40 | 23 |
| 17Q GAIN WILD-TYPE | 124 | 238 | 149 |
Figure S167. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.0123 (Fisher's exact test), Q value = 0.025
Table S168. Gene #31: '17q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 17Q GAIN MUTATED | 12 | 22 | 24 | 8 | 22 |
| 17Q GAIN WILD-TYPE | 39 | 102 | 120 | 100 | 70 |
Figure S168. Get High-res Image Gene #31: '17q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S169. Gene #32: '18p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 18P GAIN MUTATED | 38 | 22 | 60 | 15 |
| 18P GAIN WILD-TYPE | 113 | 76 | 122 | 179 |
Figure S169. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S170. Gene #32: '18p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 18P GAIN MUTATED | 42 | 57 | 28 |
| 18P GAIN WILD-TYPE | 199 | 104 | 147 |
Figure S170. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0187 (Fisher's exact test), Q value = 0.036
Table S171. Gene #32: '18p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 273 | 110 | 99 |
| 18P GAIN MUTATED | 69 | 15 | 16 |
| 18P GAIN WILD-TYPE | 204 | 95 | 83 |
Figure S171. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 0.00303 (Fisher's exact test), Q value = 0.0074
Table S172. Gene #32: '18p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 18P GAIN MUTATED | 44 | 67 | 19 |
| 18P GAIN WILD-TYPE | 126 | 206 | 134 |
Figure S172. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S173. Gene #32: '18p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 18P GAIN MUTATED | 43 | 29 | 19 | 30 | 9 |
| 18P GAIN WILD-TYPE | 88 | 87 | 79 | 91 | 121 |
Figure S173. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00076 (Fisher's exact test), Q value = 0.0021
Table S174. Gene #32: '18p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 18P GAIN MUTATED | 49 | 63 | 22 |
| 18P GAIN WILD-TYPE | 118 | 215 | 150 |
Figure S174. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00015 (Fisher's exact test), Q value = 0.00048
Table S175. Gene #32: '18p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 18P GAIN MUTATED | 42 | 30 | 25 | 27 | 10 |
| 18P GAIN WILD-TYPE | 85 | 113 | 139 | 67 | 79 |
Figure S175. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0018 (Fisher's exact test), Q value = 0.0046
Table S176. Gene #32: '18p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 18P GAIN MUTATED | 39 | 42 | 18 | 5 | 12 |
| 18P GAIN WILD-TYPE | 84 | 113 | 103 | 42 | 61 |
Figure S176. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00077 (Fisher's exact test), Q value = 0.0022
Table S177. Gene #32: '18p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 18P GAIN MUTATED | 19 | 34 | 23 | 14 | 26 |
| 18P GAIN WILD-TYPE | 32 | 90 | 121 | 94 | 66 |
Figure S177. Get High-res Image Gene #32: '18p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00203 (Fisher's exact test), Q value = 0.0051
Table S178. Gene #33: '18q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 18Q GAIN MUTATED | 24 | 18 | 26 | 11 |
| 18Q GAIN WILD-TYPE | 127 | 80 | 156 | 183 |
Figure S178. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0224 (Fisher's exact test), Q value = 0.042
Table S179. Gene #33: '18q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 18Q GAIN MUTATED | 19 | 46 | 12 |
| 18Q GAIN WILD-TYPE | 151 | 227 | 141 |
Figure S179. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00983 (Fisher's exact test), Q value = 0.021
Table S180. Gene #33: '18q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 18Q GAIN MUTATED | 24 | 20 | 13 | 13 | 7 |
| 18Q GAIN WILD-TYPE | 107 | 96 | 85 | 108 | 123 |
Figure S180. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0345 (Fisher's exact test), Q value = 0.06
Table S181. Gene #33: '18q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 18Q GAIN MUTATED | 27 | 39 | 13 |
| 18Q GAIN WILD-TYPE | 140 | 239 | 159 |
Figure S181. Get High-res Image Gene #33: '18q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 8.2e-05
Table S182. Gene #34: '19p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 19P GAIN MUTATED | 28 | 21 | 26 | 8 |
| 19P GAIN WILD-TYPE | 123 | 77 | 156 | 186 |
Figure S182. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0483 (Fisher's exact test), Q value = 0.081
Table S183. Gene #34: '19p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 273 | 110 | 99 |
| 19P GAIN MUTATED | 46 | 9 | 10 |
| 19P GAIN WILD-TYPE | 227 | 101 | 89 |
Figure S183. Get High-res Image Gene #34: '19p gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S184. Gene #35: '19q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 19Q GAIN MUTATED | 42 | 28 | 38 | 11 |
| 19Q GAIN WILD-TYPE | 109 | 70 | 144 | 183 |
Figure S184. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00918 (Fisher's exact test), Q value = 0.02
Table S185. Gene #35: '19q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 145 | 137 | 136 | 64 |
| 19Q GAIN MUTATED | 39 | 18 | 18 | 11 |
| 19Q GAIN WILD-TYPE | 106 | 119 | 118 | 53 |
Figure S185. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #3: 'RPPA_CNMF'
P value = 0.0277 (Fisher's exact test), Q value = 0.049
Table S186. Gene #35: '19q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 273 | 110 | 99 |
| 19Q GAIN MUTATED | 60 | 14 | 12 |
| 19Q GAIN WILD-TYPE | 213 | 96 | 87 |
Figure S186. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 0.0296 (Fisher's exact test), Q value = 0.052
Table S187. Gene #35: '19q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 19Q GAIN MUTATED | 27 | 66 | 23 |
| 19Q GAIN WILD-TYPE | 143 | 207 | 130 |
Figure S187. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00161 (Fisher's exact test), Q value = 0.0042
Table S188. Gene #35: '19q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 19Q GAIN MUTATED | 40 | 28 | 24 | 16 | 10 |
| 19Q GAIN WILD-TYPE | 87 | 115 | 140 | 78 | 79 |
Figure S188. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.031 (Fisher's exact test), Q value = 0.054
Table S189. Gene #35: '19q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 19Q GAIN MUTATED | 18 | 26 | 25 | 15 | 15 |
| 19Q GAIN WILD-TYPE | 33 | 98 | 119 | 93 | 77 |
Figure S189. Get High-res Image Gene #35: '19q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S190. Gene #36: '20p gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 20P GAIN MUTATED | 116 | 61 | 115 | 57 |
| 20P GAIN WILD-TYPE | 35 | 37 | 67 | 137 |
Figure S190. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00149 (Fisher's exact test), Q value = 0.0039
Table S191. Gene #36: '20p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 20P GAIN MUTATED | 135 | 106 | 81 |
| 20P GAIN WILD-TYPE | 106 | 55 | 94 |
Figure S191. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.001 (Fisher's exact test), Q value = 0.0028
Table S192. Gene #36: '20p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 20P GAIN MUTATED | 94 | 58 | 47 | 68 | 69 |
| 20P GAIN WILD-TYPE | 37 | 58 | 51 | 53 | 61 |
Figure S192. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00669 (Fisher's exact test), Q value = 0.015
Table S193. Gene #36: '20p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 20P GAIN MUTATED | 108 | 155 | 82 |
| 20P GAIN WILD-TYPE | 59 | 123 | 90 |
Figure S193. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00012
Table S194. Gene #36: '20p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 20P GAIN MUTATED | 94 | 86 | 75 | 50 | 40 |
| 20P GAIN WILD-TYPE | 33 | 57 | 89 | 44 | 49 |
Figure S194. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0124 (Fisher's exact test), Q value = 0.025
Table S195. Gene #36: '20p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 20P GAIN MUTATED | 83 | 84 | 57 | 28 | 35 |
| 20P GAIN WILD-TYPE | 40 | 71 | 64 | 19 | 38 |
Figure S195. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 8.2e-05
Table S196. Gene #36: '20p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 20P GAIN MUTATED | 44 | 73 | 65 | 55 | 50 |
| 20P GAIN WILD-TYPE | 7 | 51 | 79 | 53 | 42 |
Figure S196. Get High-res Image Gene #36: '20p gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S197. Gene #37: '20q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 20Q GAIN MUTATED | 131 | 75 | 129 | 60 |
| 20Q GAIN WILD-TYPE | 20 | 23 | 53 | 134 |
Figure S197. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00639 (Fisher's exact test), Q value = 0.014
Table S198. Gene #37: '20q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 20Q GAIN MUTATED | 98 | 193 | 90 |
| 20Q GAIN WILD-TYPE | 72 | 80 | 63 |
Figure S198. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S199. Gene #37: '20q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 20Q GAIN MUTATED | 112 | 74 | 56 | 65 | 74 |
| 20Q GAIN WILD-TYPE | 19 | 42 | 42 | 56 | 56 |
Figure S199. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S200. Gene #37: '20q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 20Q GAIN MUTATED | 114 | 98 | 86 | 47 | 44 |
| 20Q GAIN WILD-TYPE | 13 | 45 | 78 | 47 | 45 |
Figure S200. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S201. Gene #37: '20q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 20Q GAIN MUTATED | 46 | 92 | 76 | 67 | 47 |
| 20Q GAIN WILD-TYPE | 5 | 32 | 68 | 41 | 45 |
Figure S201. Get High-res Image Gene #37: '20q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00012
Table S202. Gene #38: '21q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 21Q GAIN MUTATED | 9 | 10 | 19 | 1 |
| 21Q GAIN WILD-TYPE | 142 | 88 | 163 | 193 |
Figure S202. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
Table S203. Gene #38: '21q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 21Q GAIN MUTATED | 11 | 23 | 4 |
| 21Q GAIN WILD-TYPE | 230 | 138 | 171 |
Figure S203. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00799 (Fisher's exact test), Q value = 0.017
Table S204. Gene #38: '21q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 21Q GAIN MUTATED | 17 | 18 | 3 |
| 21Q GAIN WILD-TYPE | 153 | 255 | 150 |
Figure S204. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0141 (Fisher's exact test), Q value = 0.028
Table S205. Gene #38: '21q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 21Q GAIN MUTATED | 14 | 5 | 6 | 11 | 2 |
| 21Q GAIN WILD-TYPE | 117 | 111 | 92 | 110 | 128 |
Figure S205. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00466 (Fisher's exact test), Q value = 0.011
Table S206. Gene #38: '21q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 21Q GAIN MUTATED | 18 | 16 | 4 |
| 21Q GAIN WILD-TYPE | 149 | 262 | 168 |
Figure S206. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00217 (Fisher's exact test), Q value = 0.0054
Table S207. Gene #38: '21q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 21Q GAIN MUTATED | 14 | 6 | 6 | 11 | 1 |
| 21Q GAIN WILD-TYPE | 113 | 137 | 158 | 83 | 88 |
Figure S207. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0468 (Fisher's exact test), Q value = 0.078
Table S208. Gene #38: '21q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 21Q GAIN MUTATED | 6 | 8 | 7 | 3 | 11 |
| 21Q GAIN WILD-TYPE | 45 | 116 | 137 | 105 | 81 |
Figure S208. Get High-res Image Gene #38: '21q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S209. Gene #39: '22q gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 22Q GAIN MUTATED | 11 | 8 | 40 | 4 |
| 22Q GAIN WILD-TYPE | 140 | 90 | 142 | 190 |
Figure S209. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S210. Gene #39: '22q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 22Q GAIN MUTATED | 15 | 37 | 9 |
| 22Q GAIN WILD-TYPE | 226 | 124 | 166 |
Figure S210. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 9e-05 (Fisher's exact test), Q value = 0.00031
Table S211. Gene #39: '22q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 22Q GAIN MUTATED | 33 | 21 | 9 |
| 22Q GAIN WILD-TYPE | 137 | 252 | 144 |
Figure S211. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 7e-05 (Fisher's exact test), Q value = 0.00025
Table S212. Gene #39: '22q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 22Q GAIN MUTATED | 13 | 7 | 9 | 28 | 6 |
| 22Q GAIN WILD-TYPE | 118 | 109 | 89 | 93 | 124 |
Figure S212. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00012
Table S213. Gene #39: '22q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 22Q GAIN MUTATED | 34 | 18 | 11 |
| 22Q GAIN WILD-TYPE | 133 | 260 | 161 |
Figure S213. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S214. Gene #39: '22q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 22Q GAIN MUTATED | 11 | 10 | 10 | 28 | 4 |
| 22Q GAIN WILD-TYPE | 116 | 133 | 154 | 66 | 85 |
Figure S214. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S215. Gene #39: '22q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 22Q GAIN MUTATED | 32 | 11 | 9 | 2 | 4 |
| 22Q GAIN WILD-TYPE | 91 | 144 | 112 | 45 | 69 |
Figure S215. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S216. Gene #39: '22q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 22Q GAIN MUTATED | 5 | 8 | 12 | 5 | 28 |
| 22Q GAIN WILD-TYPE | 46 | 116 | 132 | 103 | 64 |
Figure S216. Get High-res Image Gene #39: '22q gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00614 (Fisher's exact test), Q value = 0.014
Table S217. Gene #40: 'xp gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| XP GAIN MUTATED | 26 | 10 | 27 | 12 |
| XP GAIN WILD-TYPE | 125 | 88 | 155 | 182 |
Figure S217. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 8.2e-05
Table S218. Gene #40: 'xp gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| XP GAIN MUTATED | 30 | 32 | 7 |
| XP GAIN WILD-TYPE | 211 | 129 | 168 |
Figure S218. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0408 (Fisher's exact test), Q value = 0.069
Table S219. Gene #40: 'xp gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| XP GAIN MUTATED | 24 | 38 | 10 |
| XP GAIN WILD-TYPE | 146 | 235 | 143 |
Figure S219. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0338 (Fisher's exact test), Q value = 0.059
Table S220. Gene #40: 'xp gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| XP GAIN MUTATED | 18 | 10 | 17 | 19 | 8 |
| XP GAIN WILD-TYPE | 113 | 106 | 81 | 102 | 122 |
Figure S220. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0436 (Fisher's exact test), Q value = 0.073
Table S221. Gene #40: 'xp gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| XP GAIN MUTATED | 28 | 30 | 14 |
| XP GAIN WILD-TYPE | 139 | 248 | 158 |
Figure S221. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00324 (Fisher's exact test), Q value = 0.0078
Table S222. Gene #40: 'xp gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| XP GAIN MUTATED | 18 | 24 | 8 | 15 | 7 |
| XP GAIN WILD-TYPE | 109 | 119 | 156 | 79 | 82 |
Figure S222. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0219 (Fisher's exact test), Q value = 0.041
Table S223. Gene #40: 'xp gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| XP GAIN MUTATED | 5 | 20 | 7 | 11 | 14 |
| XP GAIN WILD-TYPE | 46 | 104 | 137 | 97 | 78 |
Figure S223. Get High-res Image Gene #40: 'xp gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S224. Gene #41: 'xq gain' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| XQ GAIN MUTATED | 29 | 7 | 43 | 14 |
| XQ GAIN WILD-TYPE | 122 | 91 | 139 | 180 |
Figure S224. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #1: 'CN_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00012
Table S225. Gene #41: 'xq gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| XQ GAIN MUTATED | 37 | 40 | 11 |
| XQ GAIN WILD-TYPE | 204 | 121 | 164 |
Figure S225. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00882 (Fisher's exact test), Q value = 0.019
Table S226. Gene #41: 'xq gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| XQ GAIN MUTATED | 32 | 46 | 12 |
| XQ GAIN WILD-TYPE | 138 | 227 | 141 |
Figure S226. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.00028
Table S227. Gene #41: 'xq gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| XQ GAIN MUTATED | 15 | 10 | 24 | 30 | 11 |
| XQ GAIN WILD-TYPE | 116 | 106 | 74 | 91 | 119 |
Figure S227. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00206 (Fisher's exact test), Q value = 0.0052
Table S228. Gene #41: 'xq gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| XQ GAIN MUTATED | 36 | 40 | 14 |
| XQ GAIN WILD-TYPE | 131 | 238 | 158 |
Figure S228. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00023 (Fisher's exact test), Q value = 0.00072
Table S229. Gene #41: 'xq gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| XQ GAIN MUTATED | 20 | 25 | 11 | 25 | 9 |
| XQ GAIN WILD-TYPE | 107 | 118 | 153 | 69 | 80 |
Figure S229. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0343 (Fisher's exact test), Q value = 0.06
Table S230. Gene #41: 'xq gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| XQ GAIN MUTATED | 26 | 26 | 9 | 7 | 9 |
| XQ GAIN WILD-TYPE | 97 | 129 | 112 | 40 | 64 |
Figure S230. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00017 (Fisher's exact test), Q value = 0.00054
Table S231. Gene #41: 'xq gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| XQ GAIN MUTATED | 5 | 25 | 9 | 14 | 24 |
| XQ GAIN WILD-TYPE | 46 | 99 | 135 | 94 | 68 |
Figure S231. Get High-res Image Gene #41: 'xq gain' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S232. Gene #42: '1p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 1P LOSS MUTATED | 43 | 21 | 33 | 0 |
| 1P LOSS WILD-TYPE | 108 | 77 | 149 | 194 |
Figure S232. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00039 (Fisher's exact test), Q value = 0.0012
Table S233. Gene #42: '1p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 1P LOSS MUTATED | 48 | 32 | 13 |
| 1P LOSS WILD-TYPE | 193 | 129 | 162 |
Figure S233. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00033 (Fisher's exact test), Q value = 0.001
Table S234. Gene #42: '1p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 1P LOSS MUTATED | 29 | 53 | 9 |
| 1P LOSS WILD-TYPE | 141 | 220 | 144 |
Figure S234. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0239 (Fisher's exact test), Q value = 0.044
Table S235. Gene #42: '1p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 1P LOSS MUTATED | 26 | 18 | 18 | 20 | 9 |
| 1P LOSS WILD-TYPE | 105 | 98 | 80 | 101 | 121 |
Figure S235. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0256 (Fisher's exact test), Q value = 0.046
Table S236. Gene #42: '1p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 1P LOSS MUTATED | 34 | 44 | 17 |
| 1P LOSS WILD-TYPE | 133 | 234 | 155 |
Figure S236. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00091 (Fisher's exact test), Q value = 0.0025
Table S237. Gene #42: '1p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 1P LOSS MUTATED | 29 | 31 | 15 | 13 | 7 |
| 1P LOSS WILD-TYPE | 98 | 112 | 149 | 81 | 82 |
Figure S237. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.035 (Fisher's exact test), Q value = 0.061
Table S238. Gene #42: '1p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 1P LOSS MUTATED | 13 | 27 | 16 | 13 | 13 |
| 1P LOSS WILD-TYPE | 38 | 97 | 128 | 95 | 79 |
Figure S238. Get High-res Image Gene #42: '1p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S239. Gene #43: '1q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 1Q LOSS MUTATED | 17 | 14 | 16 | 0 |
| 1Q LOSS WILD-TYPE | 134 | 84 | 166 | 194 |
Figure S239. Get High-res Image Gene #43: '1q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0376 (Fisher's exact test), Q value = 0.064
Table S240. Gene #43: '1q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 1Q LOSS MUTATED | 17 | 23 | 6 |
| 1Q LOSS WILD-TYPE | 150 | 255 | 166 |
Figure S240. Get High-res Image Gene #43: '1q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.0493 (Fisher's exact test), Q value = 0.082
Table S241. Gene #43: '1q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 1Q LOSS MUTATED | 12 | 17 | 9 | 6 | 2 |
| 1Q LOSS WILD-TYPE | 115 | 126 | 155 | 88 | 87 |
Figure S241. Get High-res Image Gene #43: '1q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00017 (Fisher's exact test), Q value = 0.00054
Table S242. Gene #44: '2p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 2P LOSS MUTATED | 14 | 8 | 13 | 1 |
| 2P LOSS WILD-TYPE | 137 | 90 | 169 | 193 |
Figure S242. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0261 (Fisher's exact test), Q value = 0.047
Table S243. Gene #44: '2p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 145 | 137 | 136 | 64 |
| 2P LOSS MUTATED | 9 | 15 | 3 | 3 |
| 2P LOSS WILD-TYPE | 136 | 122 | 133 | 61 |
Figure S243. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #3: 'RPPA_CNMF'
P value = 0.0181 (Fisher's exact test), Q value = 0.035
Table S244. Gene #44: '2p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 2P LOSS MUTATED | 15 | 6 | 5 | 7 | 2 |
| 2P LOSS WILD-TYPE | 116 | 110 | 93 | 114 | 128 |
Figure S244. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0219 (Fisher's exact test), Q value = 0.041
Table S245. Gene #44: '2p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 2P LOSS MUTATED | 12 | 8 | 3 | 9 | 4 |
| 2P LOSS WILD-TYPE | 115 | 135 | 161 | 85 | 85 |
Figure S245. Get High-res Image Gene #44: '2p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S246. Gene #45: '2q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 2Q LOSS MUTATED | 17 | 11 | 20 | 1 |
| 2Q LOSS WILD-TYPE | 134 | 87 | 162 | 193 |
Figure S246. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0321 (Fisher's exact test), Q value = 0.056
Table S247. Gene #45: '2q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 2Q LOSS MUTATED | 21 | 19 | 7 |
| 2Q LOSS WILD-TYPE | 149 | 254 | 146 |
Figure S247. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.02 (Fisher's exact test), Q value = 0.038
Table S248. Gene #45: '2q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 2Q LOSS MUTATED | 14 | 8 | 7 | 15 | 3 |
| 2Q LOSS WILD-TYPE | 117 | 108 | 91 | 106 | 127 |
Figure S248. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0101 (Fisher's exact test), Q value = 0.021
Table S249. Gene #45: '2q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 2Q LOSS MUTATED | 14 | 11 | 6 | 14 | 4 |
| 2Q LOSS WILD-TYPE | 113 | 132 | 158 | 80 | 85 |
Figure S249. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0189 (Fisher's exact test), Q value = 0.037
Table S250. Gene #45: '2q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 2Q LOSS MUTATED | 4 | 10 | 8 | 3 | 14 |
| 2Q LOSS WILD-TYPE | 47 | 114 | 136 | 105 | 78 |
Figure S250. Get High-res Image Gene #45: '2q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S251. Gene #46: '3p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 3P LOSS MUTATED | 62 | 26 | 91 | 8 |
| 3P LOSS WILD-TYPE | 89 | 72 | 91 | 186 |
Figure S251. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S252. Gene #46: '3p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 3P LOSS MUTATED | 68 | 78 | 34 |
| 3P LOSS WILD-TYPE | 173 | 83 | 141 |
Figure S252. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S253. Gene #46: '3p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 3P LOSS MUTATED | 81 | 74 | 22 |
| 3P LOSS WILD-TYPE | 89 | 199 | 131 |
Figure S253. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S254. Gene #46: '3p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 3P LOSS MUTATED | 44 | 21 | 25 | 75 | 12 |
| 3P LOSS WILD-TYPE | 87 | 95 | 73 | 46 | 118 |
Figure S254. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S255. Gene #46: '3p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 3P LOSS MUTATED | 78 | 75 | 32 |
| 3P LOSS WILD-TYPE | 89 | 203 | 140 |
Figure S255. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S256. Gene #46: '3p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 3P LOSS MUTATED | 41 | 49 | 17 | 66 | 12 |
| 3P LOSS WILD-TYPE | 86 | 94 | 147 | 28 | 77 |
Figure S256. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S257. Gene #46: '3p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 3P LOSS MUTATED | 60 | 47 | 31 | 15 | 9 |
| 3P LOSS WILD-TYPE | 63 | 108 | 90 | 32 | 64 |
Figure S257. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S258. Gene #46: '3p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 3P LOSS MUTATED | 16 | 37 | 23 | 21 | 65 |
| 3P LOSS WILD-TYPE | 35 | 87 | 121 | 87 | 27 |
Figure S258. Get High-res Image Gene #46: '3p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S259. Gene #47: '3q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 3Q LOSS MUTATED | 48 | 9 | 32 | 3 |
| 3Q LOSS WILD-TYPE | 103 | 89 | 150 | 191 |
Figure S259. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00127 (Fisher's exact test), Q value = 0.0034
Table S260. Gene #47: '3q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 3Q LOSS MUTATED | 43 | 32 | 13 |
| 3Q LOSS WILD-TYPE | 198 | 129 | 162 |
Figure S260. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0141 (Fisher's exact test), Q value = 0.028
Table S261. Gene #47: '3q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 3Q LOSS MUTATED | 30 | 46 | 12 |
| 3Q LOSS WILD-TYPE | 140 | 227 | 141 |
Figure S261. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S262. Gene #47: '3q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 3Q LOSS MUTATED | 29 | 7 | 20 | 26 | 6 |
| 3Q LOSS WILD-TYPE | 102 | 109 | 78 | 95 | 124 |
Figure S262. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S263. Gene #47: '3q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 3Q LOSS MUTATED | 26 | 31 | 6 | 20 | 7 |
| 3Q LOSS WILD-TYPE | 101 | 112 | 158 | 74 | 82 |
Figure S263. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0113 (Fisher's exact test), Q value = 0.023
Table S264. Gene #47: '3q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 3Q LOSS MUTATED | 14 | 15 | 14 | 15 | 20 |
| 3Q LOSS WILD-TYPE | 37 | 109 | 130 | 93 | 72 |
Figure S264. Get High-res Image Gene #47: '3q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S265. Gene #48: '4p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 4P LOSS MUTATED | 100 | 67 | 96 | 11 |
| 4P LOSS WILD-TYPE | 51 | 31 | 86 | 183 |
Figure S265. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S266. Gene #48: '4p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 4P LOSS MUTATED | 99 | 99 | 56 |
| 4P LOSS WILD-TYPE | 142 | 62 | 119 |
Figure S266. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0017 (Fisher's exact test), Q value = 0.0044
Table S267. Gene #48: '4p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 4P LOSS MUTATED | 90 | 121 | 51 |
| 4P LOSS WILD-TYPE | 80 | 152 | 102 |
Figure S267. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S268. Gene #48: '4p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 4P LOSS MUTATED | 77 | 46 | 36 | 68 | 35 |
| 4P LOSS WILD-TYPE | 54 | 70 | 62 | 53 | 95 |
Figure S268. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S269. Gene #48: '4p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 4P LOSS MUTATED | 103 | 112 | 57 |
| 4P LOSS WILD-TYPE | 64 | 166 | 115 |
Figure S269. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S270. Gene #48: '4p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 4P LOSS MUTATED | 82 | 65 | 41 | 56 | 28 |
| 4P LOSS WILD-TYPE | 45 | 78 | 123 | 38 | 61 |
Figure S270. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S271. Gene #48: '4p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 4P LOSS MUTATED | 79 | 69 | 46 | 22 | 17 |
| 4P LOSS WILD-TYPE | 44 | 86 | 75 | 25 | 56 |
Figure S271. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S272. Gene #48: '4p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 4P LOSS MUTATED | 36 | 61 | 39 | 41 | 56 |
| 4P LOSS WILD-TYPE | 15 | 63 | 105 | 67 | 36 |
Figure S272. Get High-res Image Gene #48: '4p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S273. Gene #49: '4q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 4Q LOSS MUTATED | 98 | 68 | 81 | 9 |
| 4Q LOSS WILD-TYPE | 53 | 30 | 101 | 185 |
Figure S273. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00013 (Fisher's exact test), Q value = 0.00042
Table S274. Gene #49: '4q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 4Q LOSS MUTATED | 101 | 85 | 53 |
| 4Q LOSS WILD-TYPE | 140 | 76 | 122 |
Figure S274. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.00028
Table S275. Gene #49: '4q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 4Q LOSS MUTATED | 74 | 45 | 34 | 54 | 37 |
| 4Q LOSS WILD-TYPE | 57 | 71 | 64 | 67 | 93 |
Figure S275. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00625 (Fisher's exact test), Q value = 0.014
Table S276. Gene #49: '4q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 4Q LOSS MUTATED | 85 | 110 | 59 |
| 4Q LOSS WILD-TYPE | 82 | 168 | 113 |
Figure S276. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S277. Gene #49: '4q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 4Q LOSS MUTATED | 81 | 63 | 41 | 42 | 27 |
| 4Q LOSS WILD-TYPE | 46 | 80 | 123 | 52 | 62 |
Figure S277. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00755 (Fisher's exact test), Q value = 0.017
Table S278. Gene #49: '4q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 4Q LOSS MUTATED | 66 | 67 | 47 | 20 | 20 |
| 4Q LOSS WILD-TYPE | 57 | 88 | 74 | 27 | 53 |
Figure S278. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S279. Gene #49: '4q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 4Q LOSS MUTATED | 35 | 59 | 40 | 44 | 42 |
| 4Q LOSS WILD-TYPE | 16 | 65 | 104 | 64 | 50 |
Figure S279. Get High-res Image Gene #49: '4q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S280. Gene #50: '5p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 5P LOSS MUTATED | 46 | 26 | 35 | 3 |
| 5P LOSS WILD-TYPE | 105 | 72 | 147 | 191 |
Figure S280. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S281. Gene #50: '5p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 5P LOSS MUTATED | 57 | 37 | 11 |
| 5P LOSS WILD-TYPE | 184 | 124 | 164 |
Figure S281. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.00028
Table S282. Gene #50: '5p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 5P LOSS MUTATED | 36 | 59 | 11 |
| 5P LOSS WILD-TYPE | 134 | 214 | 142 |
Figure S282. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S283. Gene #50: '5p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 5P LOSS MUTATED | 40 | 22 | 16 | 22 | 6 |
| 5P LOSS WILD-TYPE | 91 | 94 | 82 | 99 | 124 |
Figure S283. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00023 (Fisher's exact test), Q value = 0.00072
Table S284. Gene #50: '5p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 5P LOSS MUTATED | 35 | 59 | 14 |
| 5P LOSS WILD-TYPE | 132 | 219 | 158 |
Figure S284. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S285. Gene #50: '5p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 5P LOSS MUTATED | 42 | 39 | 11 | 11 | 5 |
| 5P LOSS WILD-TYPE | 85 | 104 | 153 | 83 | 84 |
Figure S285. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0108 (Fisher's exact test), Q value = 0.022
Table S286. Gene #50: '5p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 5P LOSS MUTATED | 31 | 36 | 14 | 7 | 8 |
| 5P LOSS WILD-TYPE | 92 | 119 | 107 | 40 | 65 |
Figure S286. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S287. Gene #50: '5p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 5P LOSS MUTATED | 22 | 32 | 16 | 15 | 11 |
| 5P LOSS WILD-TYPE | 29 | 92 | 128 | 93 | 81 |
Figure S287. Get High-res Image Gene #50: '5p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S288. Gene #51: '5q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 5Q LOSS MUTATED | 70 | 42 | 80 | 3 |
| 5Q LOSS WILD-TYPE | 81 | 56 | 102 | 191 |
Figure S288. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S289. Gene #51: '5q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 5Q LOSS MUTATED | 79 | 82 | 26 |
| 5Q LOSS WILD-TYPE | 162 | 79 | 149 |
Figure S289. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0149 (Fisher's exact test), Q value = 0.03
Table S290. Gene #51: '5q loss' versus Molecular Subtype #3: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 145 | 137 | 136 | 64 |
| 5Q LOSS MUTATED | 51 | 42 | 28 | 25 |
| 5Q LOSS WILD-TYPE | 94 | 95 | 108 | 39 |
Figure S290. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #3: 'RPPA_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S291. Gene #51: '5q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 5Q LOSS MUTATED | 72 | 95 | 23 |
| 5Q LOSS WILD-TYPE | 98 | 178 | 130 |
Figure S291. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S292. Gene #51: '5q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 5Q LOSS MUTATED | 69 | 34 | 24 | 51 | 12 |
| 5Q LOSS WILD-TYPE | 62 | 82 | 74 | 70 | 118 |
Figure S292. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 8.2e-05
Table S293. Gene #51: '5q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 5Q LOSS MUTATED | 74 | 87 | 32 |
| 5Q LOSS WILD-TYPE | 93 | 191 | 140 |
Figure S293. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S294. Gene #51: '5q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 5Q LOSS MUTATED | 70 | 51 | 24 | 38 | 10 |
| 5Q LOSS WILD-TYPE | 57 | 92 | 140 | 56 | 79 |
Figure S294. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S295. Gene #51: '5q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 5Q LOSS MUTATED | 64 | 56 | 32 | 8 | 15 |
| 5Q LOSS WILD-TYPE | 59 | 99 | 89 | 39 | 58 |
Figure S295. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S296. Gene #51: '5q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 5Q LOSS MUTATED | 32 | 48 | 30 | 27 | 38 |
| 5Q LOSS WILD-TYPE | 19 | 76 | 114 | 81 | 54 |
Figure S296. Get High-res Image Gene #51: '5q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S297. Gene #52: '6p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 6P LOSS MUTATED | 23 | 15 | 48 | 7 |
| 6P LOSS WILD-TYPE | 128 | 83 | 134 | 187 |
Figure S297. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00807 (Fisher's exact test), Q value = 0.018
Table S298. Gene #52: '6p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 6P LOSS MUTATED | 33 | 37 | 19 |
| 6P LOSS WILD-TYPE | 208 | 124 | 156 |
Figure S298. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0156 (Fisher's exact test), Q value = 0.031
Table S299. Gene #52: '6p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 6P LOSS MUTATED | 35 | 41 | 14 |
| 6P LOSS WILD-TYPE | 135 | 232 | 139 |
Figure S299. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00094 (Fisher's exact test), Q value = 0.0026
Table S300. Gene #52: '6p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 6P LOSS MUTATED | 25 | 19 | 10 | 28 | 8 |
| 6P LOSS WILD-TYPE | 106 | 97 | 88 | 93 | 122 |
Figure S300. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0385 (Fisher's exact test), Q value = 0.065
Table S301. Gene #52: '6p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 6P LOSS MUTATED | 35 | 37 | 20 |
| 6P LOSS WILD-TYPE | 132 | 241 | 152 |
Figure S301. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00118 (Fisher's exact test), Q value = 0.0032
Table S302. Gene #52: '6p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 6P LOSS MUTATED | 22 | 24 | 17 | 24 | 5 |
| 6P LOSS WILD-TYPE | 105 | 119 | 147 | 70 | 84 |
Figure S302. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0205 (Fisher's exact test), Q value = 0.039
Table S303. Gene #52: '6p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 6P LOSS MUTATED | 7 | 20 | 18 | 10 | 24 |
| 6P LOSS WILD-TYPE | 44 | 104 | 126 | 98 | 68 |
Figure S303. Get High-res Image Gene #52: '6p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S304. Gene #53: '6q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 6Q LOSS MUTATED | 29 | 18 | 56 | 9 |
| 6Q LOSS WILD-TYPE | 122 | 80 | 126 | 185 |
Figure S304. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0227 (Fisher's exact test), Q value = 0.042
Table S305. Gene #53: '6q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 6Q LOSS MUTATED | 38 | 41 | 26 |
| 6Q LOSS WILD-TYPE | 203 | 120 | 149 |
Figure S305. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00222 (Fisher's exact test), Q value = 0.0055
Table S306. Gene #53: '6q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 6Q LOSS MUTATED | 31 | 25 | 10 | 28 | 13 |
| 6Q LOSS WILD-TYPE | 100 | 91 | 88 | 93 | 117 |
Figure S306. Get High-res Image Gene #53: '6q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00105 (Fisher's exact test), Q value = 0.0029
Table S307. Gene #54: '7p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 7P LOSS MUTATED | 12 | 10 | 9 | 2 |
| 7P LOSS WILD-TYPE | 139 | 88 | 173 | 192 |
Figure S307. Get High-res Image Gene #54: '7p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00993 (Fisher's exact test), Q value = 0.021
Table S308. Gene #54: '7p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 7P LOSS MUTATED | 9 | 16 | 5 |
| 7P LOSS WILD-TYPE | 232 | 145 | 170 |
Figure S308. Get High-res Image Gene #54: '7p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0366 (Fisher's exact test), Q value = 0.063
Table S309. Gene #54: '7p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 7P LOSS MUTATED | 9 | 8 | 3 | 6 | 1 |
| 7P LOSS WILD-TYPE | 114 | 147 | 118 | 41 | 72 |
Figure S309. Get High-res Image Gene #54: '7p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S310. Gene #55: '7q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 7Q LOSS MUTATED | 16 | 17 | 15 | 2 |
| 7Q LOSS WILD-TYPE | 135 | 81 | 167 | 192 |
Figure S310. Get High-res Image Gene #55: '7q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0045 (Fisher's exact test), Q value = 0.01
Table S311. Gene #55: '7q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 7Q LOSS MUTATED | 20 | 10 | 7 | 10 | 3 |
| 7Q LOSS WILD-TYPE | 111 | 106 | 91 | 111 | 127 |
Figure S311. Get High-res Image Gene #55: '7q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.024 (Fisher's exact test), Q value = 0.044
Table S312. Gene #55: '7q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 7Q LOSS MUTATED | 21 | 20 | 8 |
| 7Q LOSS WILD-TYPE | 146 | 258 | 164 |
Figure S312. Get High-res Image Gene #55: '7q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.0094 (Fisher's exact test), Q value = 0.02
Table S313. Gene #55: '7q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 7Q LOSS MUTATED | 12 | 13 | 5 | 10 | 3 |
| 7Q LOSS WILD-TYPE | 111 | 142 | 116 | 37 | 70 |
Figure S313. Get High-res Image Gene #55: '7q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S314. Gene #56: '8p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 8P LOSS MUTATED | 49 | 26 | 72 | 9 |
| 8P LOSS WILD-TYPE | 102 | 72 | 110 | 185 |
Figure S314. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0084 (Fisher's exact test), Q value = 0.018
Table S315. Gene #56: '8p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 8P LOSS MUTATED | 61 | 53 | 32 |
| 8P LOSS WILD-TYPE | 180 | 108 | 143 |
Figure S315. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00618 (Fisher's exact test), Q value = 0.014
Table S316. Gene #56: '8p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 273 | 110 | 99 |
| 8P LOSS MUTATED | 83 | 19 | 18 |
| 8P LOSS WILD-TYPE | 190 | 91 | 81 |
Figure S316. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 0.00197 (Fisher's exact test), Q value = 0.005
Table S317. Gene #56: '8p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 8P LOSS MUTATED | 53 | 72 | 23 |
| 8P LOSS WILD-TYPE | 117 | 201 | 130 |
Figure S317. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S318. Gene #56: '8p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 8P LOSS MUTATED | 48 | 29 | 22 | 40 | 9 |
| 8P LOSS WILD-TYPE | 83 | 87 | 76 | 81 | 121 |
Figure S318. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
Table S319. Gene #56: '8p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 8P LOSS MUTATED | 60 | 70 | 23 |
| 8P LOSS WILD-TYPE | 107 | 208 | 149 |
Figure S319. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S320. Gene #56: '8p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 8P LOSS MUTATED | 38 | 42 | 27 | 37 | 9 |
| 8P LOSS WILD-TYPE | 89 | 101 | 137 | 57 | 80 |
Figure S320. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0395 (Fisher's exact test), Q value = 0.067
Table S321. Gene #56: '8p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 8P LOSS MUTATED | 44 | 38 | 24 | 12 | 14 |
| 8P LOSS WILD-TYPE | 79 | 117 | 97 | 35 | 59 |
Figure S321. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00012
Table S322. Gene #56: '8p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 8P LOSS MUTATED | 21 | 29 | 31 | 14 | 37 |
| 8P LOSS WILD-TYPE | 30 | 95 | 113 | 94 | 55 |
Figure S322. Get High-res Image Gene #56: '8p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S323. Gene #57: '8q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 8Q LOSS MUTATED | 19 | 12 | 25 | 3 |
| 8Q LOSS WILD-TYPE | 132 | 86 | 157 | 191 |
Figure S323. Get High-res Image Gene #57: '8q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0262 (Fisher's exact test), Q value = 0.047
Table S324. Gene #57: '8q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 8Q LOSS MUTATED | 17 | 34 | 7 |
| 8Q LOSS WILD-TYPE | 153 | 239 | 146 |
Figure S324. Get High-res Image Gene #57: '8q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0175 (Fisher's exact test), Q value = 0.034
Table S325. Gene #57: '8q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 8Q LOSS MUTATED | 17 | 16 | 10 | 11 | 4 |
| 8Q LOSS WILD-TYPE | 114 | 100 | 88 | 110 | 126 |
Figure S325. Get High-res Image Gene #57: '8q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0314 (Fisher's exact test), Q value = 0.055
Table S326. Gene #57: '8q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 8Q LOSS MUTATED | 7 | 15 | 11 | 3 | 11 |
| 8Q LOSS WILD-TYPE | 44 | 109 | 133 | 105 | 81 |
Figure S326. Get High-res Image Gene #57: '8q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S327. Gene #58: '9p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 9P LOSS MUTATED | 75 | 63 | 105 | 6 |
| 9P LOSS WILD-TYPE | 76 | 35 | 77 | 188 |
Figure S327. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 8e-05 (Fisher's exact test), Q value = 0.00028
Table S328. Gene #58: '9p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 9P LOSS MUTATED | 90 | 89 | 56 |
| 9P LOSS WILD-TYPE | 151 | 72 | 119 |
Figure S328. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 7e-05 (Fisher's exact test), Q value = 0.00025
Table S329. Gene #58: '9p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 9P LOSS MUTATED | 82 | 120 | 40 |
| 9P LOSS WILD-TYPE | 88 | 153 | 113 |
Figure S329. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S330. Gene #58: '9p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 9P LOSS MUTATED | 80 | 51 | 27 | 60 | 24 |
| 9P LOSS WILD-TYPE | 51 | 65 | 71 | 61 | 106 |
Figure S330. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00051 (Fisher's exact test), Q value = 0.0015
Table S331. Gene #58: '9p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 9P LOSS MUTATED | 86 | 106 | 54 |
| 9P LOSS WILD-TYPE | 81 | 172 | 118 |
Figure S331. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S332. Gene #58: '9p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 9P LOSS MUTATED | 74 | 62 | 38 | 51 | 21 |
| 9P LOSS WILD-TYPE | 53 | 81 | 126 | 43 | 68 |
Figure S332. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00098 (Fisher's exact test), Q value = 0.0027
Table S333. Gene #58: '9p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 9P LOSS MUTATED | 69 | 64 | 48 | 19 | 19 |
| 9P LOSS WILD-TYPE | 54 | 91 | 73 | 28 | 54 |
Figure S333. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00012 (Fisher's exact test), Q value = 4e-04
Table S334. Gene #58: '9p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 9P LOSS MUTATED | 29 | 58 | 43 | 38 | 51 |
| 9P LOSS WILD-TYPE | 22 | 66 | 101 | 70 | 41 |
Figure S334. Get High-res Image Gene #58: '9p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S335. Gene #59: '9q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 9Q LOSS MUTATED | 47 | 50 | 71 | 5 |
| 9Q LOSS WILD-TYPE | 104 | 48 | 111 | 189 |
Figure S335. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
Table S336. Gene #59: '9q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 9Q LOSS MUTATED | 54 | 68 | 41 |
| 9Q LOSS WILD-TYPE | 187 | 93 | 134 |
Figure S336. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00687 (Fisher's exact test), Q value = 0.015
Table S337. Gene #59: '9q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 9Q LOSS MUTATED | 61 | 79 | 31 |
| 9Q LOSS WILD-TYPE | 109 | 194 | 122 |
Figure S337. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S338. Gene #59: '9q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 9Q LOSS MUTATED | 59 | 36 | 13 | 43 | 20 |
| 9Q LOSS WILD-TYPE | 72 | 80 | 85 | 78 | 110 |
Figure S338. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00017 (Fisher's exact test), Q value = 0.00054
Table S339. Gene #59: '9q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 9Q LOSS MUTATED | 68 | 64 | 39 |
| 9Q LOSS WILD-TYPE | 99 | 214 | 133 |
Figure S339. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S340. Gene #59: '9q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 9Q LOSS MUTATED | 58 | 31 | 32 | 37 | 13 |
| 9Q LOSS WILD-TYPE | 69 | 112 | 132 | 57 | 76 |
Figure S340. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 3e-05 (Fisher's exact test), Q value = 0.00012
Table S341. Gene #59: '9q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 9Q LOSS MUTATED | 56 | 38 | 33 | 13 | 9 |
| 9Q LOSS WILD-TYPE | 67 | 117 | 88 | 34 | 64 |
Figure S341. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 8.2e-05
Table S342. Gene #59: '9q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 9Q LOSS MUTATED | 26 | 34 | 26 | 26 | 37 |
| 9Q LOSS WILD-TYPE | 25 | 90 | 118 | 82 | 55 |
Figure S342. Get High-res Image Gene #59: '9q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S343. Gene #60: '10p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 10P LOSS MUTATED | 28 | 11 | 73 | 6 |
| 10P LOSS WILD-TYPE | 123 | 87 | 109 | 188 |
Figure S343. Get High-res Image Gene #60: '10p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S344. Gene #60: '10p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 10P LOSS MUTATED | 35 | 54 | 21 |
| 10P LOSS WILD-TYPE | 206 | 107 | 154 |
Figure S344. Get High-res Image Gene #60: '10p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00377 (Fisher's exact test), Q value = 0.0089
Table S345. Gene #60: '10p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 10P LOSS MUTATED | 46 | 50 | 19 |
| 10P LOSS WILD-TYPE | 124 | 223 | 134 |
Figure S345. Get High-res Image Gene #60: '10p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S346. Gene #60: '10p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 10P LOSS MUTATED | 33 | 22 | 13 | 40 | 7 |
| 10P LOSS WILD-TYPE | 98 | 94 | 85 | 81 | 123 |
Figure S346. Get High-res Image Gene #60: '10p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00272 (Fisher's exact test), Q value = 0.0067
Table S347. Gene #60: '10p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 10P LOSS MUTATED | 45 | 51 | 21 |
| 10P LOSS WILD-TYPE | 122 | 227 | 151 |
Figure S347. Get High-res Image Gene #60: '10p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S348. Gene #60: '10p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 10P LOSS MUTATED | 31 | 24 | 22 | 36 | 4 |
| 10P LOSS WILD-TYPE | 96 | 119 | 142 | 58 | 85 |
Figure S348. Get High-res Image Gene #60: '10p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00156 (Fisher's exact test), Q value = 0.0041
Table S349. Gene #60: '10p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 10P LOSS MUTATED | 38 | 27 | 19 | 9 | 6 |
| 10P LOSS WILD-TYPE | 85 | 128 | 102 | 38 | 67 |
Figure S349. Get High-res Image Gene #60: '10p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S350. Gene #60: '10p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 10P LOSS MUTATED | 12 | 20 | 19 | 12 | 36 |
| 10P LOSS WILD-TYPE | 39 | 104 | 125 | 96 | 56 |
Figure S350. Get High-res Image Gene #60: '10p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S351. Gene #61: '10q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 10Q LOSS MUTATED | 35 | 7 | 75 | 1 |
| 10Q LOSS WILD-TYPE | 116 | 91 | 107 | 193 |
Figure S351. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S352. Gene #61: '10q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 10Q LOSS MUTATED | 34 | 56 | 19 |
| 10Q LOSS WILD-TYPE | 207 | 105 | 156 |
Figure S352. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00077 (Fisher's exact test), Q value = 0.0022
Table S353. Gene #61: '10q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 10Q LOSS MUTATED | 44 | 55 | 15 |
| 10Q LOSS WILD-TYPE | 126 | 218 | 138 |
Figure S353. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S354. Gene #61: '10q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 10Q LOSS MUTATED | 32 | 16 | 18 | 40 | 8 |
| 10Q LOSS WILD-TYPE | 99 | 100 | 80 | 81 | 122 |
Figure S354. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00356 (Fisher's exact test), Q value = 0.0085
Table S355. Gene #61: '10q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 10Q LOSS MUTATED | 43 | 54 | 20 |
| 10Q LOSS WILD-TYPE | 124 | 224 | 152 |
Figure S355. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S356. Gene #61: '10q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 10Q LOSS MUTATED | 33 | 26 | 18 | 36 | 4 |
| 10Q LOSS WILD-TYPE | 94 | 117 | 146 | 58 | 85 |
Figure S356. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00212 (Fisher's exact test), Q value = 0.0053
Table S357. Gene #61: '10q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 10Q LOSS MUTATED | 38 | 25 | 20 | 7 | 7 |
| 10Q LOSS WILD-TYPE | 85 | 130 | 101 | 40 | 66 |
Figure S357. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 8.2e-05
Table S358. Gene #61: '10q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 10Q LOSS MUTATED | 11 | 21 | 17 | 12 | 36 |
| 10Q LOSS WILD-TYPE | 40 | 103 | 127 | 96 | 56 |
Figure S358. Get High-res Image Gene #61: '10q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S359. Gene #62: '11p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 11P LOSS MUTATED | 36 | 22 | 53 | 6 |
| 11P LOSS WILD-TYPE | 115 | 76 | 129 | 188 |
Figure S359. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 6e-05 (Fisher's exact test), Q value = 0.00022
Table S360. Gene #62: '11p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 11P LOSS MUTATED | 46 | 46 | 17 |
| 11P LOSS WILD-TYPE | 195 | 115 | 158 |
Figure S360. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 7e-05 (Fisher's exact test), Q value = 0.00025
Table S361. Gene #62: '11p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 11P LOSS MUTATED | 47 | 48 | 13 |
| 11P LOSS WILD-TYPE | 123 | 225 | 140 |
Figure S361. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
Table S362. Gene #62: '11p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 11P LOSS MUTATED | 32 | 21 | 12 | 34 | 9 |
| 11P LOSS WILD-TYPE | 99 | 95 | 86 | 87 | 121 |
Figure S362. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 8.2e-05
Table S363. Gene #62: '11p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 11P LOSS MUTATED | 52 | 44 | 20 |
| 11P LOSS WILD-TYPE | 115 | 234 | 152 |
Figure S363. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00015 (Fisher's exact test), Q value = 0.00048
Table S364. Gene #62: '11p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 11P LOSS MUTATED | 31 | 32 | 21 | 26 | 6 |
| 11P LOSS WILD-TYPE | 96 | 111 | 143 | 68 | 83 |
Figure S364. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00359 (Fisher's exact test), Q value = 0.0086
Table S365. Gene #62: '11p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 11P LOSS MUTATED | 38 | 27 | 14 | 7 | 12 |
| 11P LOSS WILD-TYPE | 85 | 128 | 107 | 40 | 61 |
Figure S365. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00556 (Fisher's exact test), Q value = 0.013
Table S366. Gene #62: '11p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 11P LOSS MUTATED | 11 | 31 | 18 | 13 | 25 |
| 11P LOSS WILD-TYPE | 40 | 93 | 126 | 95 | 67 |
Figure S366. Get High-res Image Gene #62: '11p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S367. Gene #63: '11q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 11Q LOSS MUTATED | 32 | 21 | 64 | 5 |
| 11Q LOSS WILD-TYPE | 119 | 77 | 118 | 189 |
Figure S367. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S368. Gene #63: '11q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 11Q LOSS MUTATED | 41 | 57 | 18 |
| 11Q LOSS WILD-TYPE | 200 | 104 | 157 |
Figure S368. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S369. Gene #63: '11q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 11Q LOSS MUTATED | 53 | 43 | 16 |
| 11Q LOSS WILD-TYPE | 117 | 230 | 137 |
Figure S369. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S370. Gene #63: '11q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 11Q LOSS MUTATED | 32 | 16 | 10 | 43 | 11 |
| 11Q LOSS WILD-TYPE | 99 | 100 | 88 | 78 | 119 |
Figure S370. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S371. Gene #63: '11q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 11Q LOSS MUTATED | 61 | 40 | 19 |
| 11Q LOSS WILD-TYPE | 106 | 238 | 153 |
Figure S371. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S372. Gene #63: '11q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 11Q LOSS MUTATED | 29 | 27 | 18 | 38 | 8 |
| 11Q LOSS WILD-TYPE | 98 | 116 | 146 | 56 | 81 |
Figure S372. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S373. Gene #63: '11q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 11Q LOSS MUTATED | 47 | 22 | 16 | 7 | 11 |
| 11Q LOSS WILD-TYPE | 76 | 133 | 105 | 40 | 62 |
Figure S373. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S374. Gene #63: '11q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 11Q LOSS MUTATED | 12 | 23 | 18 | 13 | 37 |
| 11Q LOSS WILD-TYPE | 39 | 101 | 126 | 95 | 55 |
Figure S374. Get High-res Image Gene #63: '11q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S375. Gene #64: '12p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 12P LOSS MUTATED | 49 | 17 | 28 | 4 |
| 12P LOSS WILD-TYPE | 102 | 81 | 154 | 190 |
Figure S375. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0118 (Fisher's exact test), Q value = 0.024
Table S376. Gene #64: '12p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 12P LOSS MUTATED | 39 | 33 | 16 |
| 12P LOSS WILD-TYPE | 202 | 128 | 159 |
Figure S376. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00032 (Fisher's exact test), Q value = 0.00098
Table S377. Gene #64: '12p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 12P LOSS MUTATED | 31 | 51 | 9 |
| 12P LOSS WILD-TYPE | 139 | 222 | 144 |
Figure S377. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S378. Gene #64: '12p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 12P LOSS MUTATED | 39 | 21 | 10 | 16 | 5 |
| 12P LOSS WILD-TYPE | 92 | 95 | 88 | 105 | 125 |
Figure S378. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S379. Gene #64: '12p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 12P LOSS MUTATED | 44 | 21 | 16 | 9 | 6 |
| 12P LOSS WILD-TYPE | 83 | 122 | 148 | 85 | 83 |
Figure S379. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00883 (Fisher's exact test), Q value = 0.019
Table S380. Gene #64: '12p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 12P LOSS MUTATED | 26 | 34 | 14 | 3 | 7 |
| 12P LOSS WILD-TYPE | 97 | 121 | 107 | 44 | 66 |
Figure S380. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00011 (Fisher's exact test), Q value = 0.00037
Table S381. Gene #64: '12p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 12P LOSS MUTATED | 20 | 25 | 17 | 13 | 9 |
| 12P LOSS WILD-TYPE | 31 | 99 | 127 | 95 | 83 |
Figure S381. Get High-res Image Gene #64: '12p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S382. Gene #65: '12q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 12Q LOSS MUTATED | 37 | 15 | 32 | 3 |
| 12Q LOSS WILD-TYPE | 114 | 83 | 150 | 191 |
Figure S382. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00046 (Fisher's exact test), Q value = 0.0014
Table S383. Gene #65: '12q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 12Q LOSS MUTATED | 25 | 48 | 8 |
| 12Q LOSS WILD-TYPE | 145 | 225 | 145 |
Figure S383. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S384. Gene #65: '12q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 12Q LOSS MUTATED | 30 | 21 | 10 | 17 | 3 |
| 12Q LOSS WILD-TYPE | 101 | 95 | 88 | 104 | 127 |
Figure S384. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 6e-05 (Fisher's exact test), Q value = 0.00022
Table S385. Gene #65: '12q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 12Q LOSS MUTATED | 33 | 23 | 15 | 9 | 5 |
| 12Q LOSS WILD-TYPE | 94 | 120 | 149 | 85 | 84 |
Figure S385. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00556 (Fisher's exact test), Q value = 0.013
Table S386. Gene #65: '12q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 12Q LOSS MUTATED | 20 | 36 | 13 | 3 | 6 |
| 12Q LOSS WILD-TYPE | 103 | 119 | 108 | 44 | 67 |
Figure S386. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.024 (Fisher's exact test), Q value = 0.044
Table S387. Gene #65: '12q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 12Q LOSS MUTATED | 13 | 26 | 18 | 11 | 10 |
| 12Q LOSS WILD-TYPE | 38 | 98 | 126 | 97 | 82 |
Figure S387. Get High-res Image Gene #65: '12q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S388. Gene #66: '13q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 13Q LOSS MUTATED | 6 | 39 | 51 | 7 |
| 13Q LOSS WILD-TYPE | 145 | 59 | 131 | 187 |
Figure S388. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00012
Table S389. Gene #66: '13q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 13Q LOSS MUTATED | 32 | 46 | 18 |
| 13Q LOSS WILD-TYPE | 209 | 115 | 157 |
Figure S389. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S390. Gene #66: '13q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 13Q LOSS MUTATED | 54 | 32 | 15 |
| 13Q LOSS WILD-TYPE | 116 | 241 | 138 |
Figure S390. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S391. Gene #66: '13q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 13Q LOSS MUTATED | 24 | 19 | 5 | 44 | 9 |
| 13Q LOSS WILD-TYPE | 107 | 97 | 93 | 77 | 121 |
Figure S391. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S392. Gene #66: '13q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 13Q LOSS MUTATED | 50 | 29 | 24 |
| 13Q LOSS WILD-TYPE | 117 | 249 | 148 |
Figure S392. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S393. Gene #66: '13q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 13Q LOSS MUTATED | 21 | 15 | 17 | 43 | 7 |
| 13Q LOSS WILD-TYPE | 106 | 128 | 147 | 51 | 82 |
Figure S393. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S394. Gene #66: '13q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 13Q LOSS MUTATED | 40 | 19 | 21 | 8 | 2 |
| 13Q LOSS WILD-TYPE | 83 | 136 | 100 | 39 | 71 |
Figure S394. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S395. Gene #66: '13q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 13Q LOSS MUTATED | 8 | 18 | 12 | 10 | 42 |
| 13Q LOSS WILD-TYPE | 43 | 106 | 132 | 98 | 50 |
Figure S395. Get High-res Image Gene #66: '13q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S396. Gene #67: '14q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 14Q LOSS MUTATED | 61 | 51 | 37 | 8 |
| 14Q LOSS WILD-TYPE | 90 | 47 | 145 | 186 |
Figure S396. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0073 (Fisher's exact test), Q value = 0.016
Table S397. Gene #67: '14q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 14Q LOSS MUTATED | 63 | 52 | 31 |
| 14Q LOSS WILD-TYPE | 178 | 109 | 144 |
Figure S397. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0202 (Fisher's exact test), Q value = 0.038
Table S398. Gene #67: '14q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 14Q LOSS MUTATED | 34 | 84 | 33 |
| 14Q LOSS WILD-TYPE | 136 | 189 | 120 |
Figure S398. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S399. Gene #67: '14q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 14Q LOSS MUTATED | 55 | 39 | 17 | 19 | 21 |
| 14Q LOSS WILD-TYPE | 76 | 77 | 81 | 102 | 109 |
Figure S399. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S400. Gene #67: '14q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 14Q LOSS MUTATED | 59 | 37 | 27 | 15 | 16 |
| 14Q LOSS WILD-TYPE | 68 | 106 | 137 | 79 | 73 |
Figure S400. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0474 (Fisher's exact test), Q value = 0.079
Table S401. Gene #67: '14q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 14Q LOSS MUTATED | 33 | 50 | 26 | 8 | 12 |
| 14Q LOSS WILD-TYPE | 90 | 105 | 95 | 39 | 61 |
Figure S401. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00013 (Fisher's exact test), Q value = 0.00042
Table S402. Gene #67: '14q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 14Q LOSS MUTATED | 24 | 40 | 30 | 20 | 15 |
| 14Q LOSS WILD-TYPE | 27 | 84 | 114 | 88 | 77 |
Figure S402. Get High-res Image Gene #67: '14q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S403. Gene #68: '15q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 15Q LOSS MUTATED | 58 | 32 | 54 | 5 |
| 15Q LOSS WILD-TYPE | 93 | 66 | 128 | 189 |
Figure S403. Get High-res Image Gene #68: '15q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 5e-04 (Fisher's exact test), Q value = 0.0015
Table S404. Gene #68: '15q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 15Q LOSS MUTATED | 48 | 28 | 22 | 29 | 17 |
| 15Q LOSS WILD-TYPE | 83 | 88 | 76 | 92 | 113 |
Figure S404. Get High-res Image Gene #68: '15q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 3e-04 (Fisher's exact test), Q value = 0.00093
Table S405. Gene #68: '15q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 15Q LOSS MUTATED | 45 | 40 | 26 | 23 | 13 |
| 15Q LOSS WILD-TYPE | 82 | 103 | 138 | 71 | 76 |
Figure S405. Get High-res Image Gene #68: '15q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S406. Gene #69: '16p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 16P LOSS MUTATED | 64 | 33 | 49 | 8 |
| 16P LOSS WILD-TYPE | 87 | 65 | 133 | 186 |
Figure S406. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0111 (Fisher's exact test), Q value = 0.023
Table S407. Gene #69: '16p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 16P LOSS MUTATED | 58 | 53 | 33 |
| 16P LOSS WILD-TYPE | 183 | 108 | 142 |
Figure S407. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0285 (Fisher's exact test), Q value = 0.051
Table S408. Gene #69: '16p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 16P LOSS MUTATED | 48 | 74 | 26 |
| 16P LOSS WILD-TYPE | 122 | 199 | 127 |
Figure S408. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S409. Gene #69: '16p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 16P LOSS MUTATED | 58 | 30 | 19 | 24 | 17 |
| 16P LOSS WILD-TYPE | 73 | 86 | 79 | 97 | 113 |
Figure S409. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S410. Gene #69: '16p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 16P LOSS MUTATED | 54 | 52 | 18 | 15 | 13 |
| 16P LOSS WILD-TYPE | 73 | 91 | 146 | 79 | 76 |
Figure S410. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00044 (Fisher's exact test), Q value = 0.0013
Table S411. Gene #69: '16p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 16P LOSS MUTATED | 39 | 50 | 22 | 12 | 7 |
| 16P LOSS WILD-TYPE | 84 | 105 | 99 | 35 | 66 |
Figure S411. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 2e-05 (Fisher's exact test), Q value = 8.2e-05
Table S412. Gene #69: '16p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 16P LOSS MUTATED | 26 | 41 | 25 | 23 | 15 |
| 16P LOSS WILD-TYPE | 25 | 83 | 119 | 85 | 77 |
Figure S412. Get High-res Image Gene #69: '16p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S413. Gene #70: '16q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 16Q LOSS MUTATED | 70 | 41 | 45 | 11 |
| 16Q LOSS WILD-TYPE | 81 | 57 | 137 | 183 |
Figure S413. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S414. Gene #70: '16q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 16Q LOSS MUTATED | 60 | 37 | 19 | 22 | 23 |
| 16Q LOSS WILD-TYPE | 71 | 79 | 79 | 99 | 107 |
Figure S414. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S415. Gene #70: '16q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 16Q LOSS MUTATED | 63 | 48 | 25 | 12 | 16 |
| 16Q LOSS WILD-TYPE | 64 | 95 | 139 | 82 | 73 |
Figure S415. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0044 (Fisher's exact test), Q value = 0.01
Table S416. Gene #70: '16q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 16Q LOSS MUTATED | 39 | 53 | 25 | 13 | 10 |
| 16Q LOSS WILD-TYPE | 84 | 102 | 96 | 34 | 63 |
Figure S416. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S417. Gene #70: '16q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 16Q LOSS MUTATED | 29 | 45 | 26 | 28 | 12 |
| 16Q LOSS WILD-TYPE | 22 | 79 | 118 | 80 | 80 |
Figure S417. Get High-res Image Gene #70: '16q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S418. Gene #71: '17p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 17P LOSS MUTATED | 92 | 57 | 78 | 10 |
| 17P LOSS WILD-TYPE | 59 | 41 | 104 | 184 |
Figure S418. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 3e-05 (Fisher's exact test), Q value = 0.00012
Table S419. Gene #71: '17p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 17P LOSS MUTATED | 107 | 72 | 42 |
| 17P LOSS WILD-TYPE | 134 | 89 | 133 |
Figure S419. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00056 (Fisher's exact test), Q value = 0.0016
Table S420. Gene #71: '17p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 17P LOSS MUTATED | 63 | 122 | 40 |
| 17P LOSS WILD-TYPE | 107 | 151 | 113 |
Figure S420. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S421. Gene #71: '17p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 17P LOSS MUTATED | 76 | 54 | 36 | 37 | 22 |
| 17P LOSS WILD-TYPE | 55 | 62 | 62 | 84 | 108 |
Figure S421. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00012 (Fisher's exact test), Q value = 4e-04
Table S422. Gene #71: '17p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 17P LOSS MUTATED | 66 | 123 | 43 |
| 17P LOSS WILD-TYPE | 101 | 155 | 129 |
Figure S422. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S423. Gene #71: '17p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 17P LOSS MUTATED | 76 | 66 | 49 | 25 | 16 |
| 17P LOSS WILD-TYPE | 51 | 77 | 115 | 69 | 73 |
Figure S423. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0194 (Fisher's exact test), Q value = 0.037
Table S424. Gene #71: '17p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 17P LOSS MUTATED | 49 | 74 | 37 | 13 | 25 |
| 17P LOSS WILD-TYPE | 74 | 81 | 84 | 34 | 48 |
Figure S424. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 7e-05 (Fisher's exact test), Q value = 0.00025
Table S425. Gene #71: '17p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 17P LOSS MUTATED | 30 | 61 | 50 | 33 | 24 |
| 17P LOSS WILD-TYPE | 21 | 63 | 94 | 75 | 68 |
Figure S425. Get High-res Image Gene #71: '17p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S426. Gene #72: '17q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 17Q LOSS MUTATED | 47 | 25 | 29 | 1 |
| 17Q LOSS WILD-TYPE | 104 | 73 | 153 | 193 |
Figure S426. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0209 (Fisher's exact test), Q value = 0.039
Table S427. Gene #72: '17q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 17Q LOSS MUTATED | 35 | 36 | 20 |
| 17Q LOSS WILD-TYPE | 206 | 125 | 155 |
Figure S427. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 4e-05 (Fisher's exact test), Q value = 0.00015
Table S428. Gene #72: '17q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 17Q LOSS MUTATED | 37 | 18 | 19 | 12 | 10 |
| 17Q LOSS WILD-TYPE | 94 | 98 | 79 | 109 | 120 |
Figure S428. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0209 (Fisher's exact test), Q value = 0.039
Table S429. Gene #72: '17q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 17Q LOSS MUTATED | 29 | 54 | 17 |
| 17Q LOSS WILD-TYPE | 138 | 224 | 155 |
Figure S429. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 0.00051 (Fisher's exact test), Q value = 0.0015
Table S430. Gene #72: '17q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 17Q LOSS MUTATED | 36 | 26 | 18 | 12 | 8 |
| 17Q LOSS WILD-TYPE | 91 | 117 | 146 | 82 | 81 |
Figure S430. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0102 (Fisher's exact test), Q value = 0.021
Table S431. Gene #72: '17q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 17Q LOSS MUTATED | 18 | 16 | 21 | 17 | 12 |
| 17Q LOSS WILD-TYPE | 33 | 108 | 123 | 91 | 80 |
Figure S431. Get High-res Image Gene #72: '17q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S432. Gene #73: '18p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 18P LOSS MUTATED | 63 | 47 | 58 | 19 |
| 18P LOSS WILD-TYPE | 88 | 51 | 124 | 175 |
Figure S432. Get High-res Image Gene #73: '18p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.024 (Fisher's exact test), Q value = 0.044
Table S433. Gene #73: '18p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 18P LOSS MUTATED | 33 | 53 | 34 | 19 | 12 |
| 18P LOSS WILD-TYPE | 90 | 102 | 87 | 28 | 61 |
Figure S433. Get High-res Image Gene #73: '18p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S434. Gene #74: '18q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 18Q LOSS MUTATED | 81 | 52 | 100 | 24 |
| 18Q LOSS WILD-TYPE | 70 | 46 | 82 | 170 |
Figure S434. Get High-res Image Gene #74: '18q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00598 (Fisher's exact test), Q value = 0.014
Table S435. Gene #74: '18q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 18Q LOSS MUTATED | 102 | 80 | 57 |
| 18Q LOSS WILD-TYPE | 139 | 81 | 118 |
Figure S435. Get High-res Image Gene #74: '18q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00306 (Fisher's exact test), Q value = 0.0074
Table S436. Gene #74: '18q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 18Q LOSS MUTATED | 83 | 117 | 47 |
| 18Q LOSS WILD-TYPE | 87 | 156 | 106 |
Figure S436. Get High-res Image Gene #74: '18q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00042 (Fisher's exact test), Q value = 0.0013
Table S437. Gene #74: '18q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 18Q LOSS MUTATED | 72 | 43 | 32 | 58 | 42 |
| 18Q LOSS WILD-TYPE | 59 | 73 | 66 | 63 | 88 |
Figure S437. Get High-res Image Gene #74: '18q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00076 (Fisher's exact test), Q value = 0.0021
Table S438. Gene #74: '18q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 18Q LOSS MUTATED | 67 | 60 | 56 | 46 | 25 |
| 18Q LOSS WILD-TYPE | 60 | 83 | 108 | 48 | 64 |
Figure S438. Get High-res Image Gene #74: '18q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0277 (Fisher's exact test), Q value = 0.049
Table S439. Gene #74: '18q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 18Q LOSS MUTATED | 27 | 53 | 55 | 33 | 45 |
| 18Q LOSS WILD-TYPE | 24 | 71 | 89 | 75 | 47 |
Figure S439. Get High-res Image Gene #74: '18q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S440. Gene #75: '19p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 19P LOSS MUTATED | 71 | 30 | 74 | 7 |
| 19P LOSS WILD-TYPE | 80 | 68 | 108 | 187 |
Figure S440. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S441. Gene #75: '19p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 19P LOSS MUTATED | 60 | 85 | 27 |
| 19P LOSS WILD-TYPE | 181 | 76 | 148 |
Figure S441. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S442. Gene #75: '19p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 19P LOSS MUTATED | 67 | 88 | 20 |
| 19P LOSS WILD-TYPE | 103 | 185 | 133 |
Figure S442. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S443. Gene #75: '19p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 19P LOSS MUTATED | 74 | 32 | 21 | 38 | 10 |
| 19P LOSS WILD-TYPE | 57 | 84 | 77 | 83 | 120 |
Figure S443. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S444. Gene #75: '19p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 19P LOSS MUTATED | 78 | 75 | 27 |
| 19P LOSS WILD-TYPE | 89 | 203 | 145 |
Figure S444. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S445. Gene #75: '19p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 19P LOSS MUTATED | 73 | 41 | 23 | 34 | 9 |
| 19P LOSS WILD-TYPE | 54 | 102 | 141 | 60 | 80 |
Figure S445. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S446. Gene #75: '19p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 19P LOSS MUTATED | 62 | 47 | 20 | 12 | 16 |
| 19P LOSS WILD-TYPE | 61 | 108 | 101 | 35 | 57 |
Figure S446. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S447. Gene #75: '19p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 19P LOSS MUTATED | 32 | 43 | 26 | 22 | 34 |
| 19P LOSS WILD-TYPE | 19 | 81 | 118 | 86 | 58 |
Figure S447. Get High-res Image Gene #75: '19p loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S448. Gene #76: '19q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 19Q LOSS MUTATED | 57 | 18 | 60 | 7 |
| 19Q LOSS WILD-TYPE | 94 | 80 | 122 | 187 |
Figure S448. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S449. Gene #76: '19q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 19Q LOSS MUTATED | 41 | 71 | 20 |
| 19Q LOSS WILD-TYPE | 200 | 90 | 155 |
Figure S449. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S450. Gene #76: '19q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 19Q LOSS MUTATED | 60 | 63 | 14 |
| 19Q LOSS WILD-TYPE | 110 | 210 | 139 |
Figure S450. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S451. Gene #76: '19q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 19Q LOSS MUTATED | 58 | 25 | 16 | 32 | 6 |
| 19Q LOSS WILD-TYPE | 73 | 91 | 82 | 89 | 124 |
Figure S451. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S452. Gene #76: '19q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 19Q LOSS MUTATED | 66 | 56 | 19 |
| 19Q LOSS WILD-TYPE | 101 | 222 | 153 |
Figure S452. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S453. Gene #76: '19q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 19Q LOSS MUTATED | 55 | 32 | 14 | 32 | 8 |
| 19Q LOSS WILD-TYPE | 72 | 111 | 150 | 62 | 81 |
Figure S453. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 2e-05 (Fisher's exact test), Q value = 8.2e-05
Table S454. Gene #76: '19q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 19Q LOSS MUTATED | 51 | 30 | 15 | 9 | 15 |
| 19Q LOSS WILD-TYPE | 72 | 125 | 106 | 38 | 58 |
Figure S454. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S455. Gene #76: '19q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 19Q LOSS MUTATED | 23 | 31 | 17 | 17 | 32 |
| 19Q LOSS WILD-TYPE | 28 | 93 | 127 | 91 | 60 |
Figure S455. Get High-res Image Gene #76: '19q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 0.00278 (Fisher's exact test), Q value = 0.0068
Table S456. Gene #77: '20p loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 20P LOSS MUTATED | 10 | 12 | 16 | 4 |
| 20P LOSS WILD-TYPE | 141 | 86 | 166 | 190 |
Figure S456. Get High-res Image Gene #77: '20p loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0161 (Fisher's exact test), Q value = 0.032
Table S457. Gene #78: '20q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 20Q LOSS MUTATED | 6 | 2 | 0 |
| 20Q LOSS WILD-TYPE | 164 | 271 | 153 |
Figure S457. Get High-res Image Gene #78: '20q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.0301 (Fisher's exact test), Q value = 0.053
Table S458. Gene #78: '20q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 20Q LOSS MUTATED | 1 | 2 | 0 | 5 | 0 |
| 20Q LOSS WILD-TYPE | 130 | 114 | 98 | 116 | 130 |
Figure S458. Get High-res Image Gene #78: '20q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S459. Gene #79: '21q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 21Q LOSS MUTATED | 96 | 59 | 109 | 23 |
| 21Q LOSS WILD-TYPE | 55 | 39 | 73 | 171 |
Figure S459. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0264 (Fisher's exact test), Q value = 0.047
Table S460. Gene #79: '21q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 21Q LOSS MUTATED | 122 | 81 | 67 |
| 21Q LOSS WILD-TYPE | 119 | 80 | 108 |
Figure S460. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00045 (Fisher's exact test), Q value = 0.0013
Table S461. Gene #79: '21q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 21Q LOSS MUTATED | 92 | 132 | 51 |
| 21Q LOSS WILD-TYPE | 78 | 141 | 102 |
Figure S461. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S462. Gene #79: '21q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 21Q LOSS MUTATED | 75 | 58 | 36 | 69 | 37 |
| 21Q LOSS WILD-TYPE | 56 | 58 | 62 | 52 | 93 |
Figure S462. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0352 (Fisher's exact test), Q value = 0.061
Table S463. Gene #79: '21q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 21Q LOSS MUTATED | 84 | 135 | 65 |
| 21Q LOSS WILD-TYPE | 83 | 143 | 107 |
Figure S463. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S464. Gene #79: '21q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 21Q LOSS MUTATED | 74 | 78 | 56 | 49 | 27 |
| 21Q LOSS WILD-TYPE | 53 | 65 | 108 | 45 | 62 |
Figure S464. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00017 (Fisher's exact test), Q value = 0.00054
Table S465. Gene #79: '21q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 21Q LOSS MUTATED | 70 | 83 | 43 | 26 | 23 |
| 21Q LOSS WILD-TYPE | 53 | 72 | 78 | 21 | 50 |
Figure S465. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.0199 (Fisher's exact test), Q value = 0.038
Table S466. Gene #79: '21q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 21Q LOSS MUTATED | 30 | 67 | 57 | 43 | 48 |
| 21Q LOSS WILD-TYPE | 21 | 57 | 87 | 65 | 44 |
Figure S466. Get High-res Image Gene #79: '21q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S467. Gene #80: '22q loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| 22Q LOSS MUTATED | 83 | 64 | 64 | 7 |
| 22Q LOSS WILD-TYPE | 68 | 34 | 118 | 187 |
Figure S467. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.0104 (Fisher's exact test), Q value = 0.022
Table S468. Gene #80: '22q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| 22Q LOSS MUTATED | 91 | 67 | 47 |
| 22Q LOSS WILD-TYPE | 150 | 94 | 128 |
Figure S468. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0133 (Fisher's exact test), Q value = 0.027
Table S469. Gene #80: '22q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| 22Q LOSS MUTATED | 55 | 112 | 42 |
| 22Q LOSS WILD-TYPE | 115 | 161 | 111 |
Figure S469. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S470. Gene #80: '22q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| 22Q LOSS MUTATED | 68 | 50 | 27 | 35 | 29 |
| 22Q LOSS WILD-TYPE | 63 | 66 | 71 | 86 | 101 |
Figure S470. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.0489 (Fisher's exact test), Q value = 0.081
Table S471. Gene #80: '22q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| 22Q LOSS MUTATED | 63 | 105 | 47 |
| 22Q LOSS WILD-TYPE | 104 | 173 | 125 |
Figure S471. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S472. Gene #80: '22q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| 22Q LOSS MUTATED | 73 | 65 | 33 | 24 | 20 |
| 22Q LOSS WILD-TYPE | 54 | 78 | 131 | 70 | 69 |
Figure S472. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00244 (Fisher's exact test), Q value = 0.0061
Table S473. Gene #80: '22q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| 22Q LOSS MUTATED | 45 | 72 | 32 | 19 | 18 |
| 22Q LOSS WILD-TYPE | 78 | 83 | 89 | 28 | 55 |
Figure S473. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00012 (Fisher's exact test), Q value = 4e-04
Table S474. Gene #80: '22q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| 22Q LOSS MUTATED | 29 | 57 | 42 | 35 | 23 |
| 22Q LOSS WILD-TYPE | 22 | 67 | 102 | 73 | 69 |
Figure S474. Get High-res Image Gene #80: '22q loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S475. Gene #81: 'xp loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| XP LOSS MUTATED | 37 | 25 | 54 | 7 |
| XP LOSS WILD-TYPE | 114 | 73 | 128 | 187 |
Figure S475. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S476. Gene #81: 'xp loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| XP LOSS MUTATED | 55 | 45 | 15 |
| XP LOSS WILD-TYPE | 186 | 116 | 160 |
Figure S476. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.00254 (Fisher's exact test), Q value = 0.0063
Table S477. Gene #81: 'xp loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 273 | 110 | 99 |
| XP LOSS MUTATED | 67 | 20 | 9 |
| XP LOSS WILD-TYPE | 206 | 90 | 90 |
Figure S477. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S478. Gene #81: 'xp loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| XP LOSS MUTATED | 53 | 53 | 12 |
| XP LOSS WILD-TYPE | 117 | 220 | 141 |
Figure S478. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00049 (Fisher's exact test), Q value = 0.0014
Table S479. Gene #81: 'xp loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| XP LOSS MUTATED | 29 | 25 | 20 | 34 | 10 |
| XP LOSS WILD-TYPE | 102 | 91 | 78 | 87 | 120 |
Figure S479. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 1e-04 (Fisher's exact test), Q value = 0.00034
Table S480. Gene #81: 'xp loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| XP LOSS MUTATED | 47 | 59 | 16 |
| XP LOSS WILD-TYPE | 120 | 219 | 156 |
Figure S480. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 9e-05 (Fisher's exact test), Q value = 0.00031
Table S481. Gene #81: 'xp loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| XP LOSS MUTATED | 29 | 36 | 19 | 30 | 8 |
| XP LOSS WILD-TYPE | 98 | 107 | 145 | 64 | 81 |
Figure S481. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.00612 (Fisher's exact test), Q value = 0.014
Table S482. Gene #81: 'xp loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| XP LOSS MUTATED | 38 | 36 | 17 | 9 | 9 |
| XP LOSS WILD-TYPE | 85 | 119 | 104 | 38 | 64 |
Figure S482. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.00086 (Fisher's exact test), Q value = 0.0024
Table S483. Gene #81: 'xp loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| XP LOSS MUTATED | 14 | 31 | 20 | 14 | 30 |
| XP LOSS WILD-TYPE | 37 | 93 | 124 | 94 | 62 |
Figure S483. Get High-res Image Gene #81: 'xp loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
P value = 1e-05 (Fisher's exact test), Q value = 4.4e-05
Table S484. Gene #82: 'xq loss' versus Molecular Subtype #1: 'CN_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 151 | 98 | 182 | 194 |
| XQ LOSS MUTATED | 33 | 26 | 34 | 5 |
| XQ LOSS WILD-TYPE | 118 | 72 | 148 | 189 |
Figure S484. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #1: 'CN_CNMF'
P value = 0.00027 (Fisher's exact test), Q value = 0.00084
Table S485. Gene #82: 'xq loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 241 | 161 | 175 |
| XQ LOSS MUTATED | 45 | 32 | 12 |
| XQ LOSS WILD-TYPE | 196 | 129 | 163 |
Figure S485. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #2: 'METHLYATION_CNMF'
P value = 0.0284 (Fisher's exact test), Q value = 0.051
Table S486. Gene #82: 'xq loss' versus Molecular Subtype #3: 'RPPA_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
|---|---|---|---|---|
| ALL | 145 | 137 | 136 | 64 |
| XQ LOSS MUTATED | 34 | 18 | 15 | 9 |
| XQ LOSS WILD-TYPE | 111 | 119 | 121 | 55 |
Figure S486. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #3: 'RPPA_CNMF'
P value = 0.0022 (Fisher's exact test), Q value = 0.0055
Table S487. Gene #82: 'xq loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 273 | 110 | 99 |
| XQ LOSS MUTATED | 55 | 15 | 6 |
| XQ LOSS WILD-TYPE | 218 | 95 | 93 |
Figure S487. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'
P value = 6e-05 (Fisher's exact test), Q value = 0.00022
Table S488. Gene #82: 'xq loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 170 | 273 | 153 |
| XQ LOSS MUTATED | 40 | 44 | 9 |
| XQ LOSS WILD-TYPE | 130 | 229 | 144 |
Figure S488. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #5: 'MRNASEQ_CNMF'
P value = 0.00048 (Fisher's exact test), Q value = 0.0014
Table S489. Gene #82: 'xq loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 131 | 116 | 98 | 121 | 130 |
| XQ LOSS MUTATED | 30 | 24 | 14 | 18 | 7 |
| XQ LOSS WILD-TYPE | 101 | 92 | 84 | 103 | 123 |
Figure S489. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'
P value = 0.00107 (Fisher's exact test), Q value = 0.0029
Table S490. Gene #82: 'xq loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
|---|---|---|---|
| ALL | 167 | 278 | 172 |
| XQ LOSS MUTATED | 35 | 49 | 13 |
| XQ LOSS WILD-TYPE | 132 | 229 | 159 |
Figure S490. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #7: 'MIRSEQ_CNMF'
P value = 4e-04 (Fisher's exact test), Q value = 0.0012
Table S491. Gene #82: 'xq loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 127 | 143 | 164 | 94 | 89 |
| XQ LOSS MUTATED | 25 | 34 | 17 | 16 | 5 |
| XQ LOSS WILD-TYPE | 102 | 109 | 147 | 78 | 84 |
Figure S491. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'
P value = 0.0275 (Fisher's exact test), Q value = 0.049
Table S492. Gene #82: 'xq loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 123 | 155 | 121 | 47 | 73 |
| XQ LOSS MUTATED | 28 | 29 | 12 | 6 | 7 |
| XQ LOSS WILD-TYPE | 95 | 126 | 109 | 41 | 66 |
Figure S492. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'
P value = 0.0358 (Fisher's exact test), Q value = 0.062
Table S493. Gene #82: 'xq loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
| nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
|---|---|---|---|---|---|
| ALL | 51 | 124 | 144 | 108 | 92 |
| XQ LOSS MUTATED | 13 | 25 | 18 | 10 | 16 |
| XQ LOSS WILD-TYPE | 38 | 99 | 126 | 98 | 76 |
Figure S493. Get High-res Image Gene #82: 'xq loss' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/STES-TP/22532763/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/STES-TP/22555833/STES-TP.transferedmergedcluster.txt
-
Number of patients = 625
-
Number of significantly arm-level cnvs = 82
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.