[1] "ofn"        "-oTTGCT-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/TGCT-TP/22541961/TGCT-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/TGCT-TP/22533661/transformed.cor.cli.txt"

nPatients in clinical file=150, in cluster file=150, common to both=150
[1] "Reduce the number of clustering variables from 82 to 75."
[1]  75 150
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               37               113 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               37               113 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               60                90 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               60                90 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               47               103 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               47               103 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               42               108 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               42               108 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               26               124 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               26               124 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               35               115 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               35               115 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3               147 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3               147 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                6               144 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                6               144 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                3               147 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                3               147 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               28               122 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               28               122 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               23               127 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               23               127 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              121                29 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              121                29 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              104                46 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              104                46 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              110                40 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              110                40 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              111                39 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              111                39 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               16               134 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               16               134 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               17               133 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               17               133 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 6                144 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 6                144 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                10                140 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                10                140 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 9                141 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 9                141 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 3                147 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 3                147 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               146                  4 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               146                  4 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               100                 50 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               100                 50 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                51                 99 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                51                 99 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                51                 99 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                51                 99 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                17                133 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                17                133 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                15                135 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                15                135 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                40                110 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                40                110 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                50                100 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                50                100 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 4                146 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 4                146 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                37                113 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                37                113 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                29                121 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                29                121 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                35                115 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                35                115 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                41                109 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                41                109 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
               126                 24 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
               126                 24 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                39                111 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                39                111 
[1] "XP GAIN MUTATION ANALYSIS"
[1] 3
  XP GAIN MUTATED XP GAIN WILD-TYPE 
               22               128 
  XP GAIN MUTATED XP GAIN WILD-TYPE 
               22               128 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               23               127 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               23               127 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               20               130 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               20               130 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                9               141 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                9               141 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                4               146 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                4               146 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                5               145 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                5               145 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               31               119 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               31               119 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               23               127 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               23               127 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               94                56 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               94                56 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              109                41 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              109                41 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
              103                47 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
              103                47 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              101                49 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              101                49 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               13               137 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               13               137 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               16               134 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               16               134 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                4               146 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                4               146 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               12               138 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               12               138 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                5               145 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                5               145 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               64                86 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               64                86 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               58                92 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               58                92 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                77                 73 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                77                 73 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                71                 79 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                71                 79 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                99                 51 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                99                 51 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               116                 34 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               116                 34 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               113                 37 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               113                 37 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                20                130 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                20                130 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                29                121 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                29                121 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                44                106 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                44                106 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                51                 99 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                51                 99 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                37                113 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                37                113 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                19                131 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                19                131 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               118                 32 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               118                 32 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               122                 28 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               122                 28 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                49                101 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                49                101 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                53                 97 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                53                 97 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                29                121 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                29                121 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                15                135 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                15                135 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                43                107 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                43                107 
[1] "XP LOSS MUTATION ANALYSIS"
[1] 3
  XP LOSS MUTATED XP LOSS WILD-TYPE 
               29               121 
  XP LOSS MUTATED XP LOSS WILD-TYPE 
               29               121 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               28               122 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               28               122 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 150 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 150 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED       11      6     20      0
  1P GAIN WILD-TYPE     37     28     34     14
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              11                37
  CLUS_2               6                28
  CLUS_3              20                34
  CLUS_4               0                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        8      4     17      8
  1P GAIN WILD-TYPE     37     16     17     43
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               8                37
  CLUS_2               4                16
  CLUS_3              17                17
  CLUS_4               8                43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        5      2      4      9     12
  1P GAIN WILD-TYPE     40      6      6     28      6
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               5                40
  CLUS_2               2                 6
  CLUS_3               4                 6
  CLUS_4               9                28
  CLUS_5              12                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        6      8     18
  1P GAIN WILD-TYPE     45     17     24
D1V4, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               6                45
  CLUS_2               8                17
  CLUS_3              18                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P GAIN MUTATED        4      3     17      4      2      7      0
  1P GAIN WILD-TYPE     30     27     16     18      6     15      1
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               4                30
  CLUS_2               3                27
  CLUS_3              17                16
  CLUS_4               4                18
  CLUS_5               2                 6
  CLUS_6               7                15
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P GAIN MUTATED        5      3      3      8      4     13      1
  1P GAIN WILD-TYPE     38     24      9     16      4     10     12
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               5                38
  CLUS_2               3                24
  CLUS_3               3                 9
  CLUS_4               8                16
  CLUS_5               4                 4
  CLUS_6              13                10
  CLUS_7               1                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        4     24      9
  1P GAIN WILD-TYPE     47     33     33
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               4                47
  CLUS_2              24                33
  CLUS_3               9                33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        8     20      9
  1P GAIN WILD-TYPE     62     18     33
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               8                62
  CLUS_2              20                18
  CLUS_3               9                33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        7     21      9
  1P GAIN WILD-TYPE     62     15     36
D1V9, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               7                62
  CLUS_2              21                15
  CLUS_3               9                36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P GAIN MUTATED        4      4     11      6      9      3
  1P GAIN WILD-TYPE     30     32      8     21     10     12
D1V10, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               4                30
  CLUS_2               4                32
  CLUS_3              11                 8
  CLUS_4               6                21
  CLUS_5               9                10
  CLUS_6               3                12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       16     19     23      2
  1Q GAIN WILD-TYPE     32     15     31     12
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              16                32
  CLUS_2              19                15
  CLUS_3              23                31
  CLUS_4               2                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       15     12     15     18
  1Q GAIN WILD-TYPE     30      8     19     33
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              15                30
  CLUS_2              12                 8
  CLUS_3              15                19
  CLUS_4              18                33
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED       18      2      4     13     12
  1Q GAIN WILD-TYPE     27      6      6     24      6
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              18                27
  CLUS_2               2                 6
  CLUS_3               4                 6
  CLUS_4              13                24
  CLUS_5              12                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       19      9     21
  1Q GAIN WILD-TYPE     32     16     21
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              19                32
  CLUS_2               9                16
  CLUS_3              21                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q GAIN MUTATED        9     16     16      8      2      9      0
  1Q GAIN WILD-TYPE     25     14     17     14      6     13      1
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               9                25
  CLUS_2              16                14
  CLUS_3              16                17
  CLUS_4               8                14
  CLUS_5               2                 6
  CLUS_6               9                13
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q GAIN MUTATED       11     15      2     12      3     13      4
  1Q GAIN WILD-TYPE     32     12     10     12      5     10      9
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              11                32
  CLUS_2              15                12
  CLUS_3               2                10
  CLUS_4              12                12
  CLUS_5               3                 5
  CLUS_6              13                10
  CLUS_7               4                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       15     29     16
  1Q GAIN WILD-TYPE     36     28     26
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              15                36
  CLUS_2              29                28
  CLUS_3              16                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       26     18     16
  1Q GAIN WILD-TYPE     44     20     26
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              26                44
  CLUS_2              18                20
  CLUS_3              16                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       25     19     16
  1Q GAIN WILD-TYPE     44     17     29
D2V9, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              25                44
  CLUS_2              19                17
  CLUS_3              16                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q GAIN MUTATED        8     18     10     13      8      3
  1Q GAIN WILD-TYPE     26     18      9     14     11     12
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               8                26
  CLUS_2              18                18
  CLUS_3              10                 9
  CLUS_4              13                14
  CLUS_5               8                11
  CLUS_6               3                12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED       11     11     21      4
  2P GAIN WILD-TYPE     37     23     33     10
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              11                37
  CLUS_2              11                23
  CLUS_3              21                33
  CLUS_4               4                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        8      3     14     22
  2P GAIN WILD-TYPE     37     17     20     29
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               8                37
  CLUS_2               3                17
  CLUS_3              14                20
  CLUS_4              22                29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        7      2      4     14      8
  2P GAIN WILD-TYPE     38      6      6     23     10
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               7                38
  CLUS_2               2                 6
  CLUS_3               4                 6
  CLUS_4              14                23
  CLUS_5               8                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        9     10     16
  2P GAIN WILD-TYPE     42     15     26
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               9                42
  CLUS_2              10                15
  CLUS_3              16                26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P GAIN MUTATED        7      7     11      6      2     14      0
  2P GAIN WILD-TYPE     27     23     22     16      6      8      1
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               7                27
  CLUS_2               7                23
  CLUS_3              11                22
  CLUS_4               6                16
  CLUS_5               2                 6
  CLUS_6              14                 8
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P GAIN MUTATED        8      6      4     11      2      9      7
  2P GAIN WILD-TYPE     35     21      8     13      6     14      6
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               8                35
  CLUS_2               6                21
  CLUS_3               4                 8
  CLUS_4              11                13
  CLUS_5               2                 6
  CLUS_6               9                14
  CLUS_7               7                 6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       10     18     19
  2P GAIN WILD-TYPE     41     39     23
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              10                41
  CLUS_2              18                39
  CLUS_3              19                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       14     14     19
  2P GAIN WILD-TYPE     56     24     23
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              14                56
  CLUS_2              14                24
  CLUS_3              19                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       14     13     20
  2P GAIN WILD-TYPE     55     23     25
D3V9, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              14                55
  CLUS_2              13                23
  CLUS_3              20                25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P GAIN MUTATED        4     10      9     13      5      6
  2P GAIN WILD-TYPE     30     26     10     14     14      9
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               4                30
  CLUS_2              10                26
  CLUS_3               9                10
  CLUS_4              13                14
  CLUS_5               5                14
  CLUS_6               6                 9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED       11     10     17      4
  2Q GAIN WILD-TYPE     37     24     37     10
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              11                37
  CLUS_2              10                24
  CLUS_3              17                37
  CLUS_4               4                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED       11      1     11     19
  2Q GAIN WILD-TYPE     34     19     23     32
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              11                34
  CLUS_2               1                19
  CLUS_3              11                23
  CLUS_4              19                32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED       12      1      3     11      5
  2Q GAIN WILD-TYPE     33      7      7     26     13
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              12                33
  CLUS_2               1                 7
  CLUS_3               3                 7
  CLUS_4              11                26
  CLUS_5               5                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       13     10      9
  2Q GAIN WILD-TYPE     38     15     33
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              13                38
  CLUS_2              10                15
  CLUS_3               9                33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q GAIN MUTATED       10      6      8      4      2     12      0
  2Q GAIN WILD-TYPE     24     24     25     18      6     10      1
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              10                24
  CLUS_2               6                24
  CLUS_3               8                25
  CLUS_4               4                18
  CLUS_5               2                 6
  CLUS_6              12                10
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q GAIN MUTATED       11      5      4      9      2      6      5
  2Q GAIN WILD-TYPE     32     22      8     15      6     17      8
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              11                32
  CLUS_2               5                22
  CLUS_3               4                 8
  CLUS_4               9                15
  CLUS_5               2                 6
  CLUS_6               6                17
  CLUS_7               5                 8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       12     16     14
  2Q GAIN WILD-TYPE     39     41     28
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              12                39
  CLUS_2              16                41
  CLUS_3              14                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       16     12     14
  2Q GAIN WILD-TYPE     54     26     28
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              16                54
  CLUS_2              12                26
  CLUS_3              14                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       16     10     16
  2Q GAIN WILD-TYPE     53     26     29
D4V9, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              16                53
  CLUS_2              10                26
  CLUS_3              16                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q GAIN MUTATED        8      8      7      9      4      6
  2Q GAIN WILD-TYPE     26     28     12     18     15      9
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               8                26
  CLUS_2               8                28
  CLUS_3               7                12
  CLUS_4               9                18
  CLUS_5               4                15
  CLUS_6               6                 9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        8      3     14      1
  3P GAIN WILD-TYPE     40     31     40     13
D5V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               8                40
  CLUS_2               3                31
  CLUS_3              14                40
  CLUS_4               1                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        4      1      8     13
  3P GAIN WILD-TYPE     41     19     26     38
D5V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               4                41
  CLUS_2               1                19
  CLUS_3               8                26
  CLUS_4              13                38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        3      0      0     14      3
  3P GAIN WILD-TYPE     42      8     10     23     15
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                42
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4              14                23
  CLUS_5               3                15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        3      7     10
  3P GAIN WILD-TYPE     48     18     32
D5V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                48
  CLUS_2               7                18
  CLUS_3              10                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P GAIN MUTATED        2      2      6      2      1     13      0
  3P GAIN WILD-TYPE     32     28     27     20      7      9      1
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               2                28
  CLUS_3               6                27
  CLUS_4               2                20
  CLUS_5               1                 7
  CLUS_6              13                 9
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P GAIN MUTATED        3      2      3      5      3      3      7
  3P GAIN WILD-TYPE     40     25      9     19      5     20      6
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                40
  CLUS_2               2                25
  CLUS_3               3                 9
  CLUS_4               5                19
  CLUS_5               3                 5
  CLUS_6               3                20
  CLUS_7               7                 6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        5      9     12
  3P GAIN WILD-TYPE     46     48     30
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               5                46
  CLUS_2               9                48
  CLUS_3              12                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        5      9     12
  3P GAIN WILD-TYPE     65     29     30
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               5                65
  CLUS_2               9                29
  CLUS_3              12                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        5      8     13
  3P GAIN WILD-TYPE     64     28     32
D5V9, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               5                64
  CLUS_2               8                28
  CLUS_3              13                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P GAIN MUTATED        3      2      5      8      3      5
  3P GAIN WILD-TYPE     31     34     14     19     16     10
D5V10, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                31
  CLUS_2               2                34
  CLUS_3               5                14
  CLUS_4               8                19
  CLUS_5               3                16
  CLUS_6               5                10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        7      6     18      4
  3Q GAIN WILD-TYPE     41     28     36     10
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               7                41
  CLUS_2               6                28
  CLUS_3              18                36
  CLUS_4               4                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        5      2     13     15
  3Q GAIN WILD-TYPE     40     18     21     36
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               5                40
  CLUS_2               2                18
  CLUS_3              13                21
  CLUS_4              15                36
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        4      0      2     16      4
  3Q GAIN WILD-TYPE     41      8      8     21     14
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                41
  CLUS_2               0                 8
  CLUS_3               2                 8
  CLUS_4              16                21
  CLUS_5               4                14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        4      9     13
  3Q GAIN WILD-TYPE     47     16     29
D6V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                47
  CLUS_2               9                16
  CLUS_3              13                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q GAIN MUTATED        2      6     10      2      2     13      0
  3Q GAIN WILD-TYPE     32     24     23     20      6      9      1
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               6                24
  CLUS_3              10                23
  CLUS_4               2                20
  CLUS_5               2                 6
  CLUS_6              13                 9
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q GAIN MUTATED        4      5      5      5      3      6      7
  3Q GAIN WILD-TYPE     39     22      7     19      5     17      6
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                39
  CLUS_2               5                22
  CLUS_3               5                 7
  CLUS_4               5                19
  CLUS_5               3                 5
  CLUS_6               6                17
  CLUS_7               7                 6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        6     17     12
  3Q GAIN WILD-TYPE     45     40     30
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               6                45
  CLUS_2              17                40
  CLUS_3              12                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        9     14     12
  3Q GAIN WILD-TYPE     61     24     30
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               9                61
  CLUS_2              14                24
  CLUS_3              12                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        9     12     14
  3Q GAIN WILD-TYPE     60     24     31
D6V9, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               9                60
  CLUS_2              12                24
  CLUS_3              14                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q GAIN MUTATED        3      6      8      8      5      5
  3Q GAIN WILD-TYPE     31     30     11     19     14     10
D6V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               3                31
  CLUS_2               6                30
  CLUS_3               8                11
  CLUS_4               8                19
  CLUS_5               5                14
  CLUS_6               5                10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        0      1      2      0
  4P GAIN WILD-TYPE     48     33     52     14
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                48
  CLUS_2               1                33
  CLUS_3               2                52
  CLUS_4               0                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        0      0      1      2
  4P GAIN WILD-TYPE     45     20     33     49
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                45
  CLUS_2               0                20
  CLUS_3               1                33
  CLUS_4               2                49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        1      0      0      1      1
  4P GAIN WILD-TYPE     44      8     10     36     17
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                44
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               1                36
  CLUS_5               1                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        1      1      1
  4P GAIN WILD-TYPE     50     24     41
D7V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                50
  CLUS_2               1                24
  CLUS_3               1                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P GAIN MUTATED        0      1      1      1      0      0      0
  4P GAIN WILD-TYPE     34     29     32     21      8     22      1
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                34
  CLUS_2               1                29
  CLUS_3               1                32
  CLUS_4               1                21
  CLUS_5               0                 8
  CLUS_6               0                22
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P GAIN MUTATED        0      1      0      1      0      1      0
  4P GAIN WILD-TYPE     43     26     12     23      8     22     13
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                43
  CLUS_2               1                26
  CLUS_3               0                12
  CLUS_4               1                23
  CLUS_5               0                 8
  CLUS_6               1                22
  CLUS_7               0                13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        0      2      1
  4P GAIN WILD-TYPE     51     55     41
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                51
  CLUS_2               2                55
  CLUS_3               1                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        1      1      1
  4P GAIN WILD-TYPE     69     37     41
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                69
  CLUS_2               1                37
  CLUS_3               1                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        1      1      1
  4P GAIN WILD-TYPE     68     35     44
D7V9, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                68
  CLUS_2               1                35
  CLUS_3               1                44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P GAIN MUTATED        0      1      1      1      0      0
  4P GAIN WILD-TYPE     34     35     18     26     19     15
D7V10, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                34
  CLUS_2               1                35
  CLUS_3               1                18
  CLUS_4               1                26
  CLUS_5               0                19
  CLUS_6               0                15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        3      1      2      0
  5P GAIN WILD-TYPE     45     33     52     14
D8V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               3                45
  CLUS_2               1                33
  CLUS_3               2                52
  CLUS_4               0                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        2      0      4      0
  5P GAIN WILD-TYPE     43     20     30     51
D8V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               2                43
  CLUS_2               0                20
  CLUS_3               4                30
  CLUS_4               0                51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        1      0      0      0      4
  5P GAIN WILD-TYPE     44      8     10     37     14
D8V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                44
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               0                37
  CLUS_5               4                14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        1      0      4
  5P GAIN WILD-TYPE     50     25     38
D8V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                50
  CLUS_2               0                25
  CLUS_3               4                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P GAIN MUTATED        0      1      5      0      0      0      0
  5P GAIN WILD-TYPE     34     29     28     22      8     22      1
D8V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               0                34
  CLUS_2               1                29
  CLUS_3               5                28
  CLUS_4               0                22
  CLUS_5               0                 8
  CLUS_6               0                22
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P GAIN MUTATED        0      1      0      0      2      3      0
  5P GAIN WILD-TYPE     43     26     12     24      6     20     13
D8V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               0                43
  CLUS_2               1                26
  CLUS_3               0                12
  CLUS_4               0                24
  CLUS_5               2                 6
  CLUS_6               3                20
  CLUS_7               0                13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        0      6      0
  5P GAIN WILD-TYPE     51     51     42
D8V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               0                51
  CLUS_2               6                51
  CLUS_3               0                42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        1      5      0
  5P GAIN WILD-TYPE     69     33     42
D8V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                69
  CLUS_2               5                33
  CLUS_3               0                42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        1      5      0
  5P GAIN WILD-TYPE     68     31     45
D8V9, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               1                68
  CLUS_2               5                31
  CLUS_3               0                45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P GAIN MUTATED        0      1      2      0      3      0
  5P GAIN WILD-TYPE     34     35     17     27     16     15
D8V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               0                34
  CLUS_2               1                35
  CLUS_3               2                17
  CLUS_4               0                27
  CLUS_5               3                16
  CLUS_6               0                15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        1      0      2      0
  5Q GAIN WILD-TYPE     47     34     52     14
D9V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                47
  CLUS_2               0                34
  CLUS_3               2                52
  CLUS_4               0                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        1      0      2      0
  5Q GAIN WILD-TYPE     44     20     32     51
D9V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                44
  CLUS_2               0                20
  CLUS_3               2                32
  CLUS_4               0                51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        0      0      0      0      2
  5Q GAIN WILD-TYPE     45      8     10     37     16
D9V3, multiclass
[1] "Remove cluster labels:" "5Q GAIN MUTATED"       
clus
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                2               116 
       TCGA-2G-AAEW        TCGA-2G-AAEX        TCGA-2G-AAF1        TCGA-2G-AAF4 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAF6        TCGA-2G-AAF8        TCGA-2G-AAFG        TCGA-2G-AAFI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAFJ        TCGA-2G-AAFL        TCGA-2G-AAFN        TCGA-2G-AAFY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAFZ        TCGA-2G-AAG0        TCGA-2G-AAG3        TCGA-2G-AAG5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAG6        TCGA-2G-AAG7        TCGA-2G-AAG8        TCGA-2G-AAG9 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAGC        TCGA-2G-AAGF        TCGA-2G-AAGG        TCGA-2G-AAGI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAGJ        TCGA-2G-AAGK        TCGA-2G-AAGM        TCGA-2G-AAGN 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAGO        TCGA-2G-AAGP        TCGA-2G-AAGS        TCGA-2G-AAGT 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAGV        TCGA-2G-AAGW        TCGA-2G-AAGX        TCGA-2G-AAGY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAGZ        TCGA-2G-AAH0        TCGA-2G-AAH3        TCGA-2G-AAH4 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAH8        TCGA-2G-AAHA        TCGA-2G-AAHC        TCGA-2G-AAHG 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAHL        TCGA-2G-AAHP        TCGA-2G-AAHT        TCGA-2G-AAKG 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAKH        TCGA-2G-AAKL        TCGA-2G-AAKM        TCGA-2G-AAKO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAL5        TCGA-2G-AAL7        TCGA-2G-AALF        TCGA-2G-AALG 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AALN        TCGA-2G-AALO        TCGA-2G-AALP        TCGA-2G-AALQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AALS        TCGA-2G-AALT        TCGA-2G-AALW        TCGA-2G-AALX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AALZ        TCGA-2G-AAM2        TCGA-2G-AAM3        TCGA-2G-AAM4 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2X-A9D5        TCGA-2X-A9D6        TCGA-4K-AA1G        TCGA-4K-AA1H 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-4K-AA1I        TCGA-S6-A8JW        TCGA-S6-A8JX        TCGA-S6-A8JY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-SN-A6IS        TCGA-SN-A84X        TCGA-SO-A8JP        TCGA-VF-A8A8 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-VF-A8A9        TCGA-VF-A8AA        TCGA-VF-A8AE        TCGA-W4-A7U2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-W4-A7U3        TCGA-X3-A8G4        TCGA-XE-A8H1        TCGA-XE-A8H5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-XE-A9SE        TCGA-XE-AANI        TCGA-XE-AANJ        TCGA-XE-AANR 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-XE-AANV        TCGA-XE-AAO3        TCGA-XE-AAO4        TCGA-XE-AAO6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-XE-AAOB        TCGA-XE-AAOC        TCGA-XE-AAOD        TCGA-XE-AAOF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-XE-AAOJ        TCGA-XE-AAOL        TCGA-XY-A89B        TCGA-XY-A9T9 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-YU-A90P        TCGA-YU-A90Q        TCGA-YU-A90S        TCGA-YU-A90W 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-YU-A90Y        TCGA-YU-A912        TCGA-YU-A94I        TCGA-YU-AA61 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-ZM-AA05        TCGA-ZM-AA0B        TCGA-ZM-AA0D        TCGA-ZM-AA0E 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        0      0      2
  5Q GAIN WILD-TYPE     51     25     40
D9V4, multiclass
[1] "Remove cluster labels:" "5Q GAIN MUTATED"       
clus
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                2               116 
       TCGA-2G-AAEW        TCGA-2G-AAEX        TCGA-2G-AAF1        TCGA-2G-AAF4 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAF6        TCGA-2G-AAF8        TCGA-2G-AAFG        TCGA-2G-AAFI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAFJ        TCGA-2G-AAFL        TCGA-2G-AAFN        TCGA-2G-AAFY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAFZ        TCGA-2G-AAG0        TCGA-2G-AAG3        TCGA-2G-AAG5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAG6        TCGA-2G-AAG7        TCGA-2G-AAG8        TCGA-2G-AAG9 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAGC        TCGA-2G-AAGF        TCGA-2G-AAGG        TCGA-2G-AAGI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAGJ        TCGA-2G-AAGK        TCGA-2G-AAGM        TCGA-2G-AAGN 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAGO        TCGA-2G-AAGP        TCGA-2G-AAGS        TCGA-2G-AAGT 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAGV        TCGA-2G-AAGW        TCGA-2G-AAGX        TCGA-2G-AAGY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAGZ        TCGA-2G-AAH0        TCGA-2G-AAH3        TCGA-2G-AAH4 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAH8        TCGA-2G-AAHA        TCGA-2G-AAHC        TCGA-2G-AAHG 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAHL        TCGA-2G-AAHP        TCGA-2G-AAHT        TCGA-2G-AAKG 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAKH        TCGA-2G-AAKL        TCGA-2G-AAKM        TCGA-2G-AAKO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AAL5        TCGA-2G-AAL7        TCGA-2G-AALF        TCGA-2G-AALG 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AALN        TCGA-2G-AALO        TCGA-2G-AALP        TCGA-2G-AALQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AALS        TCGA-2G-AALT        TCGA-2G-AALW        TCGA-2G-AALX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2G-AALZ        TCGA-2G-AAM2        TCGA-2G-AAM3        TCGA-2G-AAM4 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-2X-A9D5        TCGA-2X-A9D6        TCGA-4K-AA1G        TCGA-4K-AA1H 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-4K-AA1I        TCGA-S6-A8JW        TCGA-S6-A8JX        TCGA-S6-A8JY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-SN-A6IS        TCGA-SN-A84X        TCGA-SO-A8JP        TCGA-VF-A8A8 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-VF-A8A9        TCGA-VF-A8AA        TCGA-VF-A8AE        TCGA-W4-A7U2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-W4-A7U3        TCGA-X3-A8G4        TCGA-XE-A8H1        TCGA-XE-A8H5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-XE-A9SE        TCGA-XE-AANI        TCGA-XE-AANJ        TCGA-XE-AANR 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-XE-AANV        TCGA-XE-AAO3        TCGA-XE-AAO4        TCGA-XE-AAO6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-XE-AAOB        TCGA-XE-AAOC        TCGA-XE-AAOD        TCGA-XE-AAOF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-XE-AAOJ        TCGA-XE-AAOL        TCGA-XY-A89B        TCGA-XY-A9T9 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-YU-A90P        TCGA-YU-A90Q        TCGA-YU-A90S        TCGA-YU-A90W 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-YU-A90Y        TCGA-YU-A912        TCGA-YU-A94I        TCGA-YU-AA61 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-ZM-AA05        TCGA-ZM-AA0B        TCGA-ZM-AA0D        TCGA-ZM-AA0E 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q GAIN MUTATED        0      0      3      0      0      0      0
  5Q GAIN WILD-TYPE     34     30     30     22      8     22      1
D9V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                34
  CLUS_2               0                30
  CLUS_3               3                30
  CLUS_4               0                22
  CLUS_5               0                 8
  CLUS_6               0                22
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q GAIN MUTATED        0      0      0      0      1      2      0
  5Q GAIN WILD-TYPE     43     27     12     24      7     21     13
D9V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                43
  CLUS_2               0                27
  CLUS_3               0                12
  CLUS_4               0                24
  CLUS_5               1                 7
  CLUS_6               2                21
  CLUS_7               0                13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        0      3      0
  5Q GAIN WILD-TYPE     51     54     42
D9V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                51
  CLUS_2               3                54
  CLUS_3               0                42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        0      3      0
  5Q GAIN WILD-TYPE     70     35     42
D9V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                70
  CLUS_2               3                35
  CLUS_3               0                42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        0      3      0
  5Q GAIN WILD-TYPE     69     33     45
D9V9, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                69
  CLUS_2               3                33
  CLUS_3               0                45
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q GAIN MUTATED        0      0      2      0      1      0
  5Q GAIN WILD-TYPE     34     36     17     27     18     15
D9V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                34
  CLUS_2               0                36
  CLUS_3               2                17
  CLUS_4               0                27
  CLUS_5               1                18
  CLUS_6               0                15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = 6P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED       10      4     13      1
  6P GAIN WILD-TYPE     38     30     41     13
D10V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              10                38
  CLUS_2               4                30
  CLUS_3              13                41
  CLUS_4               1                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        8      3      5     12
  6P GAIN WILD-TYPE     37     17     29     39
D10V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               8                37
  CLUS_2               3                17
  CLUS_3               5                29
  CLUS_4              12                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        5      1      2     10      3
  6P GAIN WILD-TYPE     40      7      8     27     15
D10V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               5                40
  CLUS_2               1                 7
  CLUS_3               2                 8
  CLUS_4              10                27
  CLUS_5               3                15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        6      9      6
  6P GAIN WILD-TYPE     45     16     36
D10V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               6                45
  CLUS_2               9                16
  CLUS_3               6                36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P GAIN MUTATED        8      1      5      7      0      7      0
  6P GAIN WILD-TYPE     26     29     28     15      8     15      1
D10V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               8                26
  CLUS_2               1                29
  CLUS_3               5                28
  CLUS_4               7                15
  CLUS_5               0                 8
  CLUS_6               7                15
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P GAIN MUTATED        8      1      0     12      0      5      2
  6P GAIN WILD-TYPE     35     26     12     12      8     18     11
D10V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               8                35
  CLUS_2               1                26
  CLUS_3               0                12
  CLUS_4              12                12
  CLUS_5               0                 8
  CLUS_6               5                18
  CLUS_7               2                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        7      6     15
  6P GAIN WILD-TYPE     44     51     27
D10V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               7                44
  CLUS_2               6                51
  CLUS_3              15                27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        9      4     15
  6P GAIN WILD-TYPE     61     34     27
D10V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               9                61
  CLUS_2               4                34
  CLUS_3              15                27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        9      5     14
  6P GAIN WILD-TYPE     60     31     31
D10V9, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               9                60
  CLUS_2               5                31
  CLUS_3              14                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P GAIN MUTATED        7      2      4      9      1      5
  6P GAIN WILD-TYPE     27     34     15     18     18     10
D10V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               7                27
  CLUS_2               2                34
  CLUS_3               4                15
  CLUS_4               9                18
  CLUS_5               1                18
  CLUS_6               5                10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = 6Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        8      2     12      1
  6Q GAIN WILD-TYPE     40     32     42     13
D11V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               8                40
  CLUS_2               2                32
  CLUS_3              12                42
  CLUS_4               1                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        7      2      3     11
  6Q GAIN WILD-TYPE     38     18     31     40
D11V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               7                38
  CLUS_2               2                18
  CLUS_3               3                31
  CLUS_4              11                40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        6      1      2      8      2
  6Q GAIN WILD-TYPE     39      7      8     29     16
D11V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               6                39
  CLUS_2               1                 7
  CLUS_3               2                 8
  CLUS_4               8                29
  CLUS_5               2                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        7      7      5
  6Q GAIN WILD-TYPE     44     18     37
D11V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               7                44
  CLUS_2               7                18
  CLUS_3               5                37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q GAIN MUTATED        8      0      3      7      0      5      0
  6Q GAIN WILD-TYPE     26     30     30     15      8     17      1
D11V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               8                26
  CLUS_2               0                30
  CLUS_3               3                30
  CLUS_4               7                15
  CLUS_5               0                 8
  CLUS_6               5                17
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q GAIN MUTATED        8      0      0     11      0      3      1
  6Q GAIN WILD-TYPE     35     27     12     13      8     20     12
D11V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               8                35
  CLUS_2               0                27
  CLUS_3               0                12
  CLUS_4              11                13
  CLUS_5               0                 8
  CLUS_6               3                20
  CLUS_7               1                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        7      3     13
  6Q GAIN WILD-TYPE     44     54     29
D11V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               7                44
  CLUS_2               3                54
  CLUS_3              13                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        8      2     13
  6Q GAIN WILD-TYPE     62     36     29
D11V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               8                62
  CLUS_2               2                36
  CLUS_3              13                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        8      3     12
  6Q GAIN WILD-TYPE     61     33     33
D11V9, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               8                61
  CLUS_2               3                33
  CLUS_3              12                33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q GAIN MUTATED        6      2      3      8      0      4
  6Q GAIN WILD-TYPE     28     34     16     19     19     11
D11V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               6                28
  CLUS_2               2                34
  CLUS_3               3                16
  CLUS_4               8                19
  CLUS_5               0                19
  CLUS_6               4                11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       33     31     44     13
  7P GAIN WILD-TYPE     15      3     10      1
D12V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              33                15
  CLUS_2              31                 3
  CLUS_3              44                10
  CLUS_4              13                 1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       39     16     30     36
  7P GAIN WILD-TYPE      6      4      4     15
D12V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              39                 6
  CLUS_2              16                 4
  CLUS_3              30                 4
  CLUS_4              36                15
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED       39      8      5     25     16
  7P GAIN WILD-TYPE      6      0      5     12      2
D12V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              39                 6
  CLUS_2               8                 0
  CLUS_3               5                 5
  CLUS_4              25                12
  CLUS_5              16                 2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       45     15     33
  7P GAIN WILD-TYPE      6     10      9
D12V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              45                 6
  CLUS_2              15                10
  CLUS_3              33                 9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P GAIN MUTATED       32     27     28     11      6     17      0
  7P GAIN WILD-TYPE      2      3      5     11      2      5      1
D12V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              32                 2
  CLUS_2              27                 3
  CLUS_3              28                 5
  CLUS_4              11                11
  CLUS_5               6                 2
  CLUS_6              17                 5
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7P GAIN MUTATED       38     24      7     16      6     22      8
  7P GAIN WILD-TYPE      5      3      5      8      2      1      5
D12V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              38                 5
  CLUS_2              24                 3
  CLUS_3               7                 5
  CLUS_4              16                 8
  CLUS_5               6                 2
  CLUS_6              22                 1
  CLUS_7               8                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       44     50     27
  7P GAIN WILD-TYPE      7      7     15
D12V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              44                 7
  CLUS_2              50                 7
  CLUS_3              27                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       62     32     27
  7P GAIN WILD-TYPE      8      6     15
D12V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              62                 8
  CLUS_2              32                 6
  CLUS_3              27                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       61     31     29
  7P GAIN WILD-TYPE      8      5     16
D12V9, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              61                 8
  CLUS_2              31                 5
  CLUS_3              29                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7P GAIN MUTATED       30     32     15     17     17     10
  7P GAIN WILD-TYPE      4      4      4     10      2      5
D12V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              30                 4
  CLUS_2              32                 4
  CLUS_3              15                 4
  CLUS_4              17                10
  CLUS_5              17                 2
  CLUS_6              10                 5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       31     21     39     13
  7Q GAIN WILD-TYPE     17     13     15      1
D13V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              31                17
  CLUS_2              21                13
  CLUS_3              39                15
  CLUS_4              13                 1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       33     12     29     30
  7Q GAIN WILD-TYPE     12      8      5     21
D13V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              33                12
  CLUS_2              12                 8
  CLUS_3              29                 5
  CLUS_4              30                21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED       31      7      4     22     14
  7Q GAIN WILD-TYPE     14      1      6     15      4
D13V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              31                14
  CLUS_2               7                 1
  CLUS_3               4                 6
  CLUS_4              22                15
  CLUS_5              14                 4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       36     14     28
  7Q GAIN WILD-TYPE     15     11     14
D13V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              36                15
  CLUS_2              14                11
  CLUS_3              28                14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q GAIN MUTATED       30     18     27      6      6     17      0
  7Q GAIN WILD-TYPE      4     12      6     16      2      5      1
D13V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              30                 4
  CLUS_2              18                12
  CLUS_3              27                 6
  CLUS_4               6                16
  CLUS_5               6                 2
  CLUS_6              17                 5
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q GAIN MUTATED       36     15      8     11      6     20      8
  7Q GAIN WILD-TYPE      7     12      4     13      2      3      5
D13V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              36                 7
  CLUS_2              15                12
  CLUS_3               8                 4
  CLUS_4              11                13
  CLUS_5               6                 2
  CLUS_6              20                 3
  CLUS_7               8                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       38     44     22
  7Q GAIN WILD-TYPE     13     13     20
D13V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              38                13
  CLUS_2              44                13
  CLUS_3              22                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       51     31     22
  7Q GAIN WILD-TYPE     19      7     20
D13V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              51                19
  CLUS_2              31                 7
  CLUS_3              22                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       50     30     24
  7Q GAIN WILD-TYPE     19      6     21
D13V9, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              50                19
  CLUS_2              30                 6
  CLUS_3              24                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q GAIN MUTATED       29     22     14     13     17      9
  7Q GAIN WILD-TYPE      5     14      5     14      2      6
D13V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              29                 5
  CLUS_2              22                14
  CLUS_3              14                 5
  CLUS_4              13                14
  CLUS_5              17                 2
  CLUS_6               9                 6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       32     30     36     12
  8P GAIN WILD-TYPE     16      4     18      2
D14V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              32                16
  CLUS_2              30                 4
  CLUS_3              36                18
  CLUS_4              12                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       37     20     22     31
  8P GAIN WILD-TYPE      8      0     12     20
D14V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              37                 8
  CLUS_2              20                 0
  CLUS_3              22                12
  CLUS_4              31                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED       41      6      4     22     12
  8P GAIN WILD-TYPE      4      2      6     15      6
D14V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              41                 4
  CLUS_2               6                 2
  CLUS_3               4                 6
  CLUS_4              22                15
  CLUS_5              12                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       46     12     27
  8P GAIN WILD-TYPE      5     13     15
D14V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              46                 5
  CLUS_2              12                13
  CLUS_3              27                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P GAIN MUTATED       30     29     23     13      5      9      1
  8P GAIN WILD-TYPE      4      1     10      9      3     13      0
D14V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              30                 4
  CLUS_2              29                 1
  CLUS_3              23                10
  CLUS_4              13                 9
  CLUS_5               5                 3
  CLUS_6               9                13
  CLUS_7               1                 0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P GAIN MUTATED       37     26      8     14      5     15      5
  8P GAIN WILD-TYPE      6      1      4     10      3      8      8
D14V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              37                 6
  CLUS_2              26                 1
  CLUS_3               8                 4
  CLUS_4              14                10
  CLUS_5               5                 3
  CLUS_6              15                 8
  CLUS_7               5                 8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       45     44     21
  8P GAIN WILD-TYPE      6     13     21
D14V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              45                 6
  CLUS_2              44                13
  CLUS_3              21                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       63     26     21
  8P GAIN WILD-TYPE      7     12     21
D14V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              63                 7
  CLUS_2              26                12
  CLUS_3              21                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       62     24     24
  8P GAIN WILD-TYPE      7     12     21
D14V9, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              62                 7
  CLUS_2              24                12
  CLUS_3              24                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P GAIN MUTATED       29     34     14     14     12      7
  8P GAIN WILD-TYPE      5      2      5     13      7      8
D14V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              29                 5
  CLUS_2              34                 2
  CLUS_3              14                 5
  CLUS_4              14                13
  CLUS_5              12                 7
  CLUS_6               7                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       32     29     36     14
  8Q GAIN WILD-TYPE     16      5     18      0
D15V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              32                16
  CLUS_2              29                 5
  CLUS_3              36                18
  CLUS_4              14                 0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       40     17     23     31
  8Q GAIN WILD-TYPE      5      3     11     20
D15V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              40                 5
  CLUS_2              17                 3
  CLUS_3              23                11
  CLUS_4              31                20
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED       40      6      6     21     13
  8Q GAIN WILD-TYPE      5      2      4     16      5
D15V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              40                 5
  CLUS_2               6                 2
  CLUS_3               6                 4
  CLUS_4              21                16
  CLUS_5              13                 5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       45     14     27
  8Q GAIN WILD-TYPE      6     11     15
D15V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              45                 6
  CLUS_2              14                11
  CLUS_3              27                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q GAIN MUTATED       33     25     24     14      5      9      1
  8Q GAIN WILD-TYPE      1      5      9      8      3     13      0
D15V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              33                 1
  CLUS_2              25                 5
  CLUS_3              24                 9
  CLUS_4              14                 8
  CLUS_5               5                 3
  CLUS_6               9                13
  CLUS_7               1                 0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q GAIN MUTATED       40     22      8     15      5     17      4
  8Q GAIN WILD-TYPE      3      5      4      9      3      6      9
D15V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              40                 3
  CLUS_2              22                 5
  CLUS_3               8                 4
  CLUS_4              15                 9
  CLUS_5               5                 3
  CLUS_6              17                 6
  CLUS_7               4                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       46     43     22
  8Q GAIN WILD-TYPE      5     14     20
D15V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              46                 5
  CLUS_2              43                14
  CLUS_3              22                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       62     27     22
  8Q GAIN WILD-TYPE      8     11     20
D15V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              62                 8
  CLUS_2              27                11
  CLUS_3              22                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       61     25     25
  8Q GAIN WILD-TYPE      8     11     20
D15V9, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              61                 8
  CLUS_2              25                11
  CLUS_3              25                20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q GAIN MUTATED       31     31     14     15     13      7
  8Q GAIN WILD-TYPE      3      5      5     12      6      8
D15V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              31                 3
  CLUS_2              31                 5
  CLUS_3              14                 5
  CLUS_4              15                12
  CLUS_5              13                 6
  CLUS_6               7                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        6      1      7      2
  9P GAIN WILD-TYPE     42     33     47     12
D16V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               6                42
  CLUS_2               1                33
  CLUS_3               7                47
  CLUS_4               2                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        3      1      5      7
  9P GAIN WILD-TYPE     42     19     29     44
D16V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                42
  CLUS_2               1                19
  CLUS_3               5                29
  CLUS_4               7                44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        2      1      0      5      2
  9P GAIN WILD-TYPE     43      7     10     32     16
D16V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                43
  CLUS_2               1                 7
  CLUS_3               0                10
  CLUS_4               5                32
  CLUS_5               2                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        3      3      4
  9P GAIN WILD-TYPE     48     22     38
D16V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                48
  CLUS_2               3                22
  CLUS_3               4                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P GAIN MUTATED        2      2      5      3      0      4      0
  9P GAIN WILD-TYPE     32     28     28     19      8     18      1
D16V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               2                28
  CLUS_3               5                28
  CLUS_4               3                19
  CLUS_5               0                 8
  CLUS_6               4                18
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P GAIN MUTATED        2      2      1      4      0      4      3
  9P GAIN WILD-TYPE     41     25     11     20      8     19     10
D16V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                41
  CLUS_2               2                25
  CLUS_3               1                11
  CLUS_4               4                20
  CLUS_5               0                 8
  CLUS_6               4                19
  CLUS_7               3                10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        3      6      7
  9P GAIN WILD-TYPE     48     51     35
D16V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                48
  CLUS_2               6                51
  CLUS_3               7                35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        4      5      7
  9P GAIN WILD-TYPE     66     33     35
D16V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               4                66
  CLUS_2               5                33
  CLUS_3               7                35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        4      5      7
  9P GAIN WILD-TYPE     65     31     38
D16V9, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               4                65
  CLUS_2               5                31
  CLUS_3               7                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P GAIN MUTATED        2      2      3      4      2      3
  9P GAIN WILD-TYPE     32     34     16     23     17     12
D16V10, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               2                34
  CLUS_3               3                16
  CLUS_4               4                23
  CLUS_5               2                17
  CLUS_6               3                12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = 9Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        7      5      2      3
  9Q GAIN WILD-TYPE     41     29     52     11
D17V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               7                41
  CLUS_2               5                29
  CLUS_3               2                52
  CLUS_4               3                11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        5      4      4      4
  9Q GAIN WILD-TYPE     40     16     30     47
D17V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               5                40
  CLUS_2               4                16
  CLUS_3               4                30
  CLUS_4               4                47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED        6      1      2      3      2
  9Q GAIN WILD-TYPE     39      7      8     34     16
D17V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               6                39
  CLUS_2               1                 7
  CLUS_3               2                 8
  CLUS_4               3                34
  CLUS_5               2                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        7      4      3
  9Q GAIN WILD-TYPE     44     21     39
D17V4, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               7                44
  CLUS_2               4                21
  CLUS_3               3                39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q GAIN MUTATED        2      6      5      0      0      4      0
  9Q GAIN WILD-TYPE     32     24     28     22      8     18      1
D17V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               6                24
  CLUS_3               5                28
  CLUS_4               0                22
  CLUS_5               0                 8
  CLUS_6               4                18
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q GAIN MUTATED        2      6      0      1      1      4      3
  9Q GAIN WILD-TYPE     41     21     12     23      7     19     10
D17V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               2                41
  CLUS_2               6                21
  CLUS_3               0                12
  CLUS_4               1                23
  CLUS_5               1                 7
  CLUS_6               4                19
  CLUS_7               3                10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        4      9      4
  9Q GAIN WILD-TYPE     47     48     38
D17V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               4                47
  CLUS_2               9                48
  CLUS_3               4                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        8      5      4
  9Q GAIN WILD-TYPE     62     33     38
D17V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               8                62
  CLUS_2               5                33
  CLUS_3               4                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        7      6      4
  9Q GAIN WILD-TYPE     62     30     41
D17V9, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               7                62
  CLUS_2               6                30
  CLUS_3               4                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q GAIN MUTATED        2      6      0      2      5      2
  9Q GAIN WILD-TYPE     32     30     19     25     14     13
D17V10, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               6                30
  CLUS_3               0                19
  CLUS_4               2                25
  CLUS_5               5                14
  CLUS_6               2                13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        0      4      2      0
  10P GAIN WILD-TYPE     48     30     52     14
D18V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 48
  CLUS_2                4                 30
  CLUS_3                2                 52
  CLUS_4                0                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        1      1      0      4
  10P GAIN WILD-TYPE     44     19     34     47
D18V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                 44
  CLUS_2                1                 19
  CLUS_3                0                 34
  CLUS_4                4                 47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        1      0      0      3      0
  10P GAIN WILD-TYPE     44      8     10     34     18
D18V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                 44
  CLUS_2                0                  8
  CLUS_3                0                 10
  CLUS_4                3                 34
  CLUS_5                0                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        1      1      2
  10P GAIN WILD-TYPE     50     24     40
D18V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                1                 24
  CLUS_3                2                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P GAIN MUTATED        0      3      0      1      0      2      0
  10P GAIN WILD-TYPE     34     27     33     21      8     20      1
D18V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                3                 27
  CLUS_3                0                 33
  CLUS_4                1                 21
  CLUS_5                0                  8
  CLUS_6                2                 20
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P GAIN MUTATED        1      2      0      1      0      0      2
  10P GAIN WILD-TYPE     42     25     12     23      8     23     11
D18V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                 42
  CLUS_2                2                 25
  CLUS_3                0                 12
  CLUS_4                1                 23
  CLUS_5                0                  8
  CLUS_6                0                 23
  CLUS_7                2                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        0      3      3
  10P GAIN WILD-TYPE     51     54     39
D18V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 51
  CLUS_2                3                 54
  CLUS_3                3                 39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        3      0      3
  10P GAIN WILD-TYPE     67     38     39
D18V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                 67
  CLUS_2                0                 38
  CLUS_3                3                 39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        3      0      3
  10P GAIN WILD-TYPE     66     36     42
D18V9, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                 66
  CLUS_2                0                 36
  CLUS_3                3                 42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P GAIN MUTATED        0      3      0      3      0      0
  10P GAIN WILD-TYPE     34     33     19     24     19     15
D18V10, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                3                 33
  CLUS_3                0                 19
  CLUS_4                3                 24
  CLUS_5                0                 19
  CLUS_6                0                 15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = 10Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        3      5      2      0
  10Q GAIN WILD-TYPE     45     29     52     14
D19V1, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 45
  CLUS_2                5                 29
  CLUS_3                2                 52
  CLUS_4                0                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        2      2      1      5
  10Q GAIN WILD-TYPE     43     18     33     46
D19V2, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                 43
  CLUS_2                2                 18
  CLUS_3                1                 33
  CLUS_4                5                 46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        2      1      1      3      1
  10Q GAIN WILD-TYPE     43      7      9     34     17
D19V3, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                 43
  CLUS_2                1                  7
  CLUS_3                1                  9
  CLUS_4                3                 34
  CLUS_5                1                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        3      3      2
  10Q GAIN WILD-TYPE     48     22     40
D19V4, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                3                 22
  CLUS_3                2                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q GAIN MUTATED        0      5      1      2      0      2      0
  10Q GAIN WILD-TYPE     34     25     32     20      8     20      1
D19V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                5                 25
  CLUS_3                1                 32
  CLUS_4                2                 20
  CLUS_5                0                  8
  CLUS_6                2                 20
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q GAIN MUTATED        2      3      0      2      1      0      2
  10Q GAIN WILD-TYPE     41     24     12     22      7     23     11
D19V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                2                 41
  CLUS_2                3                 24
  CLUS_3                0                 12
  CLUS_4                2                 22
  CLUS_5                1                  7
  CLUS_6                0                 23
  CLUS_7                2                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        1      5      4
  10Q GAIN WILD-TYPE     50     52     38
D19V7, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                5                 52
  CLUS_3                4                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        5      1      4
  10Q GAIN WILD-TYPE     65     37     38
D19V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                5                 65
  CLUS_2                1                 37
  CLUS_3                4                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        5      1      4
  10Q GAIN WILD-TYPE     64     35     41
D19V9, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                5                 64
  CLUS_2                1                 35
  CLUS_3                4                 41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q GAIN MUTATED        1      4      0      4      1      0
  10Q GAIN WILD-TYPE     33     32     19     23     18     15
D19V10, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                 33
  CLUS_2                4                 32
  CLUS_3                0                 19
  CLUS_4                4                 23
  CLUS_5                1                 18
  CLUS_6                0                 15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        3      2      2      2
  11P GAIN WILD-TYPE     45     32     52     12
D20V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                3                 45
  CLUS_2                2                 32
  CLUS_3                2                 52
  CLUS_4                2                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        1      1      3      4
  11P GAIN WILD-TYPE     44     19     31     47
D20V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 44
  CLUS_2                1                 19
  CLUS_3                3                 31
  CLUS_4                4                 47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        1      0      2      1      3
  11P GAIN WILD-TYPE     44      8      8     36     15
D20V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 44
  CLUS_2                0                  8
  CLUS_3                2                  8
  CLUS_4                1                 36
  CLUS_5                3                 15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      3      3
  11P GAIN WILD-TYPE     50     22     39
D20V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                3                 22
  CLUS_3                3                 39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P GAIN MUTATED        0      1      2      1      2      3      0
  11P GAIN WILD-TYPE     34     29     31     21      6     19      1
D20V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                1                 29
  CLUS_3                2                 31
  CLUS_4                1                 21
  CLUS_5                2                  6
  CLUS_6                3                 19
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P GAIN MUTATED        1      1      0      1      2      1      3
  11P GAIN WILD-TYPE     42     26     12     23      6     22     10
D20V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 42
  CLUS_2                1                 26
  CLUS_3                0                 12
  CLUS_4                1                 23
  CLUS_5                2                  6
  CLUS_6                1                 22
  CLUS_7                3                 10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      4      4
  11P GAIN WILD-TYPE     50     53     38
D20V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                4                 53
  CLUS_3                4                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        2      3      4
  11P GAIN WILD-TYPE     68     35     38
D20V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                 68
  CLUS_2                3                 35
  CLUS_3                4                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        2      3      4
  11P GAIN WILD-TYPE     67     33     41
D20V9, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                2                 67
  CLUS_2                3                 33
  CLUS_3                4                 41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P GAIN MUTATED        1      1      0      3      3      1
  11P GAIN WILD-TYPE     33     35     19     24     16     14
D20V10, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 33
  CLUS_2                1                 35
  CLUS_3                0                 19
  CLUS_4                3                 24
  CLUS_5                3                 16
  CLUS_6                1                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        0      0      2      1
  11Q GAIN WILD-TYPE     48     34     52     13
D21V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                 48
  CLUS_2                0                 34
  CLUS_3                2                 52
  CLUS_4                1                 13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        0      0      1      2
  11Q GAIN WILD-TYPE     45     20     33     49
D21V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                 45
  CLUS_2                0                 20
  CLUS_3                1                 33
  CLUS_4                2                 49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        0      0      0      1      2
  11Q GAIN WILD-TYPE     45      8     10     36     16
D21V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                 45
  CLUS_2                0                  8
  CLUS_3                0                 10
  CLUS_4                1                 36
  CLUS_5                2                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        0      1      2
  11Q GAIN WILD-TYPE     51     24     40
D21V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                 51
  CLUS_2                1                 24
  CLUS_3                2                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q GAIN MUTATED        0      0      1      0      0      2      0
  11Q GAIN WILD-TYPE     34     30     32     22      8     20      1
D21V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                0                 30
  CLUS_3                1                 32
  CLUS_4                0                 22
  CLUS_5                0                  8
  CLUS_6                2                 20
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q GAIN MUTATED        0      0      0      0      0      1      2
  11Q GAIN WILD-TYPE     43     27     12     24      8     22     11
D21V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                 43
  CLUS_2                0                 27
  CLUS_3                0                 12
  CLUS_4                0                 24
  CLUS_5                0                  8
  CLUS_6                1                 22
  CLUS_7                2                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        0      1      2
  11Q GAIN WILD-TYPE     51     56     40
D21V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                 51
  CLUS_2                1                 56
  CLUS_3                2                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        0      1      2
  11Q GAIN WILD-TYPE     70     37     40
D21V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                 70
  CLUS_2                1                 37
  CLUS_3                2                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        0      1      2
  11Q GAIN WILD-TYPE     69     35     43
D21V9, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                 69
  CLUS_2                1                 35
  CLUS_3                2                 43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q GAIN MUTATED        0      0      0      2      1      0
  11Q GAIN WILD-TYPE     34     36     19     25     18     15
D21V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                0                 36
  CLUS_3                0                 19
  CLUS_4                2                 25
  CLUS_5                1                 18
  CLUS_6                0                 15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       45     33     54     14
  12P GAIN WILD-TYPE      3      1      0      0
D22V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               45                  3
  CLUS_2               33                  1
  CLUS_3               54                  0
  CLUS_4               14                  0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       42     20     34     50
  12P GAIN WILD-TYPE      3      0      0      1
D22V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               42                  3
  CLUS_2               20                  0
  CLUS_3               34                  0
  CLUS_4               50                  1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED       43      7     10     36     18
  12P GAIN WILD-TYPE      2      1      0      1      0
D22V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               43                  2
  CLUS_2                7                  1
  CLUS_3               10                  0
  CLUS_4               36                  1
  CLUS_5               18                  0
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       48     25     41
  12P GAIN WILD-TYPE      3      0      1
D22V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               48                  3
  CLUS_2               25                  0
  CLUS_3               41                  1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P GAIN MUTATED       32     30     33     21      7     22      1
  12P GAIN WILD-TYPE      2      0      0      1      1      0      0
D22V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               32                  2
  CLUS_2               30                  0
  CLUS_3               33                  0
  CLUS_4               21                  1
  CLUS_5                7                  1
  CLUS_6               22                  0
  CLUS_7                1                  0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12P GAIN MUTATED       40     27     11     24      8     23     13
  12P GAIN WILD-TYPE      3      0      1      0      0      0      0
D22V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               40                  3
  CLUS_2               27                  0
  CLUS_3               11                  1
  CLUS_4               24                  0
  CLUS_5                8                  0
  CLUS_6               23                  0
  CLUS_7               13                  0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       48     56     42
  12P GAIN WILD-TYPE      3      1      0
D22V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               48                  3
  CLUS_2               56                  1
  CLUS_3               42                  0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       67     37     42
  12P GAIN WILD-TYPE      3      1      0
D22V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               67                  3
  CLUS_2               37                  1
  CLUS_3               42                  0
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       66     36     44
  12P GAIN WILD-TYPE      3      0      1
D22V9, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               66                  3
  CLUS_2               36                  0
  CLUS_3               44                  1
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12P GAIN MUTATED       31     36     18     27     19     15
  12P GAIN WILD-TYPE      3      0      1      0      0      0
D22V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               31                  3
  CLUS_2               36                  0
  CLUS_3               18                  1
  CLUS_4               27                  0
  CLUS_5               19                  0
  CLUS_6               15                  0
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       30     25     36      9
  12Q GAIN WILD-TYPE     18      9     18      5
D23V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               30                 18
  CLUS_2               25                  9
  CLUS_3               36                 18
  CLUS_4                9                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       27     16     25     32
  12Q GAIN WILD-TYPE     18      4      9     19
D23V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               27                 18
  CLUS_2               16                  4
  CLUS_3               25                  9
  CLUS_4               32                 19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED       34      5      8     20     13
  12Q GAIN WILD-TYPE     11      3      2     17      5
D23V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               34                 11
  CLUS_2                5                  3
  CLUS_3                8                  2
  CLUS_4               20                 17
  CLUS_5               13                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       37     17     26
  12Q GAIN WILD-TYPE     14      8     16
D23V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               37                 14
  CLUS_2               17                  8
  CLUS_3               26                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q GAIN MUTATED       22     25     23     10      5     14      1
  12Q GAIN WILD-TYPE     12      5     10     12      3      8      0
D23V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               22                 12
  CLUS_2               25                  5
  CLUS_3               23                 10
  CLUS_4               10                 12
  CLUS_5                5                  3
  CLUS_6               14                  8
  CLUS_7                1                  0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  12Q GAIN MUTATED       28     22      6     14      6     17      7
  12Q GAIN WILD-TYPE     15      5      6     10      2      6      6
D23V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               28                 15
  CLUS_2               22                  5
  CLUS_3                6                  6
  CLUS_4               14                 10
  CLUS_5                6                  2
  CLUS_6               17                  6
  CLUS_7                7                  6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       34     43     23
  12Q GAIN WILD-TYPE     17     14     19
D23V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               34                 17
  CLUS_2               43                 14
  CLUS_3               23                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       50     27     23
  12Q GAIN WILD-TYPE     20     11     19
D23V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               50                 20
  CLUS_2               27                 11
  CLUS_3               23                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       49     27     24
  12Q GAIN WILD-TYPE     20      9     21
D23V9, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               49                 20
  CLUS_2               27                  9
  CLUS_3               24                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q GAIN MUTATED       20     30     12     15     15      8
  12Q GAIN WILD-TYPE     14      6      7     12      4      7
D23V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               20                 14
  CLUS_2               30                  6
  CLUS_3               12                  7
  CLUS_4               15                 12
  CLUS_5               15                  4
  CLUS_6                8                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED       13     13     16      9
  14Q GAIN WILD-TYPE     35     21     38      5
D24V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               13                 35
  CLUS_2               13                 21
  CLUS_3               16                 38
  CLUS_4                9                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED       15      7      9     20
  14Q GAIN WILD-TYPE     30     13     25     31
D24V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               15                 30
  CLUS_2                7                 13
  CLUS_3                9                 25
  CLUS_4               20                 31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED       16      3      3     14      3
  14Q GAIN WILD-TYPE     29      5      7     23     15
D24V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               16                 29
  CLUS_2                3                  5
  CLUS_3                3                  7
  CLUS_4               14                 23
  CLUS_5                3                 15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       19      6     14
  14Q GAIN WILD-TYPE     32     19     28
D24V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               19                 32
  CLUS_2                6                 19
  CLUS_3               14                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q GAIN MUTATED       14     11      9      8      2      7      0
  14Q GAIN WILD-TYPE     20     19     24     14      6     15      1
D24V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               14                 20
  CLUS_2               11                 19
  CLUS_3                9                 24
  CLUS_4                8                 14
  CLUS_5                2                  6
  CLUS_6                7                 15
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q GAIN MUTATED       17      9      6      7      2      4      6
  14Q GAIN WILD-TYPE     26     18      6     17      6     19      7
D24V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               17                 26
  CLUS_2                9                 18
  CLUS_3                6                  6
  CLUS_4                7                 17
  CLUS_5                2                  6
  CLUS_6                4                 19
  CLUS_7                6                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       16     19     16
  14Q GAIN WILD-TYPE     35     38     26
D24V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               16                 35
  CLUS_2               19                 38
  CLUS_3               16                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       26      9     16
  14Q GAIN WILD-TYPE     44     29     26
D24V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               26                 44
  CLUS_2                9                 29
  CLUS_3               16                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       25      8     18
  14Q GAIN WILD-TYPE     44     28     27
D24V9, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               25                 44
  CLUS_2                8                 28
  CLUS_3               18                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q GAIN MUTATED       13     13      5     10      4      6
  14Q GAIN WILD-TYPE     21     23     14     17     15      9
D24V10, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               13                 21
  CLUS_2               13                 23
  CLUS_3                5                 14
  CLUS_4               10                 17
  CLUS_5                4                 15
  CLUS_6                6                  9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED       19     17     12      3
  15Q GAIN WILD-TYPE     29     17     42     11
D25V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               19                 29
  CLUS_2               17                 17
  CLUS_3               12                 42
  CLUS_4                3                 11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED       24      5      8     14
  15Q GAIN WILD-TYPE     21     15     26     37
D25V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               24                 21
  CLUS_2                5                 15
  CLUS_3                8                 26
  CLUS_4               14                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED       24      2      2      5      4
  15Q GAIN WILD-TYPE     21      6      8     32     14
D25V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               24                 21
  CLUS_2                2                  6
  CLUS_3                2                  8
  CLUS_4                5                 32
  CLUS_5                4                 14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       26      3      8
  15Q GAIN WILD-TYPE     25     22     34
D25V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               26                 25
  CLUS_2                3                 22
  CLUS_3                8                 34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q GAIN MUTATED       23     13      8      3      2      2      0
  15Q GAIN WILD-TYPE     11     17     25     19      6     20      1
D25V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               23                 11
  CLUS_2               13                 17
  CLUS_3                8                 25
  CLUS_4                3                 19
  CLUS_5                2                  6
  CLUS_6                2                 20
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q GAIN MUTATED       26     12      1      4      0      7      1
  15Q GAIN WILD-TYPE     17     15     11     20      8     16     12
D25V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               26                 17
  CLUS_2               12                 15
  CLUS_3                1                 11
  CLUS_4                4                 20
  CLUS_5                0                  8
  CLUS_6                7                 16
  CLUS_7                1                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       27     19      5
  15Q GAIN WILD-TYPE     24     38     37
D25V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               27                 24
  CLUS_2               19                 38
  CLUS_3                5                 37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       38      8      5
  15Q GAIN WILD-TYPE     32     30     37
D25V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               38                 32
  CLUS_2                8                 30
  CLUS_3                5                 37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       37      8      6
  15Q GAIN WILD-TYPE     32     28     39
D25V9, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               37                 32
  CLUS_2                8                 28
  CLUS_3                6                 39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q GAIN MUTATED       22     16      6      3      2      2
  15Q GAIN WILD-TYPE     12     20     13     24     17     13
D25V10, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               22                 12
  CLUS_2               16                 20
  CLUS_3                6                 13
  CLUS_4                3                 24
  CLUS_5                2                 17
  CLUS_6                2                 13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        3      2     11      1
  16P GAIN WILD-TYPE     45     32     43     13
D26V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                 45
  CLUS_2                2                 32
  CLUS_3               11                 43
  CLUS_4                1                 13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        2      2      3     10
  16P GAIN WILD-TYPE     43     18     31     41
D26V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                 43
  CLUS_2                2                 18
  CLUS_3                3                 31
  CLUS_4               10                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED        2      0      2      9      2
  16P GAIN WILD-TYPE     43      8      8     28     16
D26V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                 43
  CLUS_2                0                  8
  CLUS_3                2                  8
  CLUS_4                9                 28
  CLUS_5                2                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        2      8      5
  16P GAIN WILD-TYPE     49     17     37
D26V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                8                 17
  CLUS_3                5                 37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P GAIN MUTATED        2      2      3      4      0      6      0
  16P GAIN WILD-TYPE     32     28     30     18      8     16      1
D26V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                 32
  CLUS_2                2                 28
  CLUS_3                3                 30
  CLUS_4                4                 18
  CLUS_5                0                  8
  CLUS_6                6                 16
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P GAIN MUTATED        2      2      1      8      0      2      2
  16P GAIN WILD-TYPE     41     25     11     16      8     21     11
D26V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                2                 41
  CLUS_2                2                 25
  CLUS_3                1                 11
  CLUS_4                8                 16
  CLUS_5                0                  8
  CLUS_6                2                 21
  CLUS_7                2                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        1      6     10
  16P GAIN WILD-TYPE     50     51     32
D26V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                6                 51
  CLUS_3               10                 32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        4      3     10
  16P GAIN WILD-TYPE     66     35     32
D26V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                 66
  CLUS_2                3                 35
  CLUS_3               10                 32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        4      2     11
  16P GAIN WILD-TYPE     65     34     34
D26V9, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                 65
  CLUS_2                2                 34
  CLUS_3               11                 34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P GAIN MUTATED        1      3      2      7      1      3
  16P GAIN WILD-TYPE     33     33     17     20     18     12
D26V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                1                 33
  CLUS_2                3                 33
  CLUS_3                2                 17
  CLUS_4                7                 20
  CLUS_5                1                 18
  CLUS_6                3                 12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        3      2     10      0
  16Q GAIN WILD-TYPE     45     32     44     14
D27V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                3                 45
  CLUS_2                2                 32
  CLUS_3               10                 44
  CLUS_4                0                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        2      2      4      7
  16Q GAIN WILD-TYPE     43     18     30     44
D27V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                 43
  CLUS_2                2                 18
  CLUS_3                4                 30
  CLUS_4                7                 44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        1      0      2      7      2
  16Q GAIN WILD-TYPE     44      8      8     30     16
D27V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                 44
  CLUS_2                0                  8
  CLUS_3                2                  8
  CLUS_4                7                 30
  CLUS_5                2                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        1      6      5
  16Q GAIN WILD-TYPE     50     19     37
D27V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                6                 19
  CLUS_3                5                 37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q GAIN MUTATED        1      2      4      4      0      4      0
  16Q GAIN WILD-TYPE     33     28     29     18      8     18      1
D27V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                 33
  CLUS_2                2                 28
  CLUS_3                4                 29
  CLUS_4                4                 18
  CLUS_5                0                  8
  CLUS_6                4                 18
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q GAIN MUTATED        1      2      1      6      0      3      2
  16Q GAIN WILD-TYPE     42     25     11     18      8     20     11
D27V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                 42
  CLUS_2                2                 25
  CLUS_3                1                 11
  CLUS_4                6                 18
  CLUS_5                0                  8
  CLUS_6                3                 20
  CLUS_7                2                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        1      6      8
  16Q GAIN WILD-TYPE     50     51     34
D27V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                6                 51
  CLUS_3                8                 34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        3      4      8
  16Q GAIN WILD-TYPE     67     34     34
D27V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                3                 67
  CLUS_2                4                 34
  CLUS_3                8                 34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        3      3      9
  16Q GAIN WILD-TYPE     66     33     36
D27V9, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                3                 66
  CLUS_2                3                 33
  CLUS_3                9                 36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q GAIN MUTATED        0      3      3      6      1      2
  16Q GAIN WILD-TYPE     34     33     16     21     18     13
D27V10, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                3                 33
  CLUS_3                3                 16
  CLUS_4                6                 21
  CLUS_5                1                 18
  CLUS_6                2                 13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = 17P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        9      3     24      4
  17P GAIN WILD-TYPE     39     31     30     10
D28V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                9                 39
  CLUS_2                3                 31
  CLUS_3               24                 30
  CLUS_4                4                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        2      3     18     17
  17P GAIN WILD-TYPE     43     17     16     34
D28V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                 43
  CLUS_2                3                 17
  CLUS_3               18                 16
  CLUS_4               17                 34
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED        2      0      5     15      8
  17P GAIN WILD-TYPE     43      8      5     22     10
D28V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                 43
  CLUS_2                0                  8
  CLUS_3                5                  5
  CLUS_4               15                 22
  CLUS_5                8                 10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        2     11     17
  17P GAIN WILD-TYPE     49     14     25
D28V4, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                 49
  CLUS_2               11                 14
  CLUS_3               17                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P GAIN MUTATED        0      2     17      7      2     11      1
  17P GAIN WILD-TYPE     34     28     16     15      6     11      0
D28V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                2                 28
  CLUS_3               17                 16
  CLUS_4                7                 15
  CLUS_5                2                  6
  CLUS_6               11                 11
  CLUS_7                1                  0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P GAIN MUTATED        2      1      5     11      4     12      5
  17P GAIN WILD-TYPE     41     26      7     13      4     11      8
D28V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                 41
  CLUS_2                1                 26
  CLUS_3                5                  7
  CLUS_4               11                 13
  CLUS_5                4                  4
  CLUS_6               12                 11
  CLUS_7                5                  8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        2     20     18
  17P GAIN WILD-TYPE     49     37     24
D28V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                 49
  CLUS_2               20                 37
  CLUS_3               18                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        3     19     18
  17P GAIN WILD-TYPE     67     19     24
D28V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                3                 67
  CLUS_2               19                 19
  CLUS_3               18                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        3     17     20
  17P GAIN WILD-TYPE     66     19     25
D28V9, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                3                 66
  CLUS_2               17                 19
  CLUS_3               20                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P GAIN MUTATED        1      2     11     11      9      6
  17P GAIN WILD-TYPE     33     34      8     16     10      9
D28V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 33
  CLUS_2                2                 34
  CLUS_3               11                  8
  CLUS_4               11                 16
  CLUS_5                9                 10
  CLUS_6                6                  9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED       12      6     27      5
  17Q GAIN WILD-TYPE     36     28     27      9
D29V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               12                 36
  CLUS_2                6                 28
  CLUS_3               27                 27
  CLUS_4                5                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        4      6     20     20
  17Q GAIN WILD-TYPE     41     14     14     31
D29V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 41
  CLUS_2                6                 14
  CLUS_3               20                 14
  CLUS_4               20                 31
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        5      0      5     19     10
  17Q GAIN WILD-TYPE     40      8      5     18      8
D29V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                5                 40
  CLUS_2                0                  8
  CLUS_3                5                  5
  CLUS_4               19                 18
  CLUS_5               10                  8
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        5     12     22
  17Q GAIN WILD-TYPE     46     13     20
D29V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                5                 46
  CLUS_2               12                 13
  CLUS_3               22                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q GAIN MUTATED        2      4     20      8      2     13      1
  17Q GAIN WILD-TYPE     32     26     13     14      6      9      0
D29V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                2                 32
  CLUS_2                4                 26
  CLUS_3               20                 13
  CLUS_4                8                 14
  CLUS_5                2                  6
  CLUS_6               13                  9
  CLUS_7                1                  0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q GAIN MUTATED        4      3      6     13      4     14      6
  17Q GAIN WILD-TYPE     39     24      6     11      4      9      7
D29V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 39
  CLUS_2                3                 24
  CLUS_3                6                  6
  CLUS_4               13                 11
  CLUS_5                4                  4
  CLUS_6               14                  9
  CLUS_7                6                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        4     24     22
  17Q GAIN WILD-TYPE     47     33     20
D29V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 47
  CLUS_2               24                 33
  CLUS_3               22                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        7     21     22
  17Q GAIN WILD-TYPE     63     17     20
D29V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                7                 63
  CLUS_2               21                 17
  CLUS_3               22                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        6     20     24
  17Q GAIN WILD-TYPE     63     16     21
D29V9, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                6                 63
  CLUS_2               20                 16
  CLUS_3               24                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q GAIN MUTATED        2      5     10     13     11      9
  17Q GAIN WILD-TYPE     32     31      9     14      8      6
D29V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                2                 32
  CLUS_2                5                 31
  CLUS_3               10                  9
  CLUS_4               13                 14
  CLUS_5               11                  8
  CLUS_6                9                  6
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        1      1      1      1
  18P GAIN WILD-TYPE     47     33     53     13
D30V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 47
  CLUS_2                1                 33
  CLUS_3                1                 53
  CLUS_4                1                 13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        1      0      0      3
  18P GAIN WILD-TYPE     44     20     34     48
D30V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 44
  CLUS_2                0                 20
  CLUS_3                0                 34
  CLUS_4                3                 48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        2      0      1      1      0
  18P GAIN WILD-TYPE     43      8      9     36     18
D30V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                2                 43
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                1                 36
  CLUS_5                0                 18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        2      1      1
  18P GAIN WILD-TYPE     49     24     41
D30V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                2                 49
  CLUS_2                1                 24
  CLUS_3                1                 41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P GAIN MUTATED        1      1      0      2      0      0      0
  18P GAIN WILD-TYPE     33     29     33     20      8     22      1
D30V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 33
  CLUS_2                1                 29
  CLUS_3                0                 33
  CLUS_4                2                 20
  CLUS_5                0                  8
  CLUS_6                0                 22
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P GAIN MUTATED        1      1      0      2      0      0      0
  18P GAIN WILD-TYPE     42     26     12     22      8     23     13
D30V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 42
  CLUS_2                1                 26
  CLUS_3                0                 12
  CLUS_4                2                 22
  CLUS_5                0                  8
  CLUS_6                0                 23
  CLUS_7                0                 13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        1      1      2
  18P GAIN WILD-TYPE     50     56     40
D30V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 50
  CLUS_2                1                 56
  CLUS_3                2                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        2      0      2
  18P GAIN WILD-TYPE     68     38     40
D30V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                2                 68
  CLUS_2                0                 38
  CLUS_3                2                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        2      0      2
  18P GAIN WILD-TYPE     67     36     43
D30V9, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                2                 67
  CLUS_2                0                 36
  CLUS_3                2                 43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P GAIN MUTATED        1      1      0      1      0      1
  18P GAIN WILD-TYPE     33     35     19     26     19     14
D30V10, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 33
  CLUS_2                1                 35
  CLUS_3                0                 19
  CLUS_4                1                 26
  CLUS_5                0                 19
  CLUS_6                1                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(31) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       10     16      7      4
  19P GAIN WILD-TYPE     38     18     47     10
D31V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               10                 38
  CLUS_2               16                 18
  CLUS_3                7                 47
  CLUS_4                4                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       13     10      4     10
  19P GAIN WILD-TYPE     32     10     30     41
D31V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               13                 32
  CLUS_2               10                 10
  CLUS_3                4                 30
  CLUS_4               10                 41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED       20      1      1      5      4
  19P GAIN WILD-TYPE     25      7      9     32     14
D31V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               20                 25
  CLUS_2                1                  7
  CLUS_3                1                  9
  CLUS_4                5                 32
  CLUS_5                4                 14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       21      3      7
  19P GAIN WILD-TYPE     30     22     35
D31V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               21                 30
  CLUS_2                3                 22
  CLUS_3                7                 35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P GAIN MUTATED       12     15      4      3      1      2      0
  19P GAIN WILD-TYPE     22     15     29     19      7     20      1
D31V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               12                 22
  CLUS_2               15                 15
  CLUS_3                4                 29
  CLUS_4                3                 19
  CLUS_5                1                  7
  CLUS_6                2                 20
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P GAIN MUTATED       14     14      0      4      0      4      1
  19P GAIN WILD-TYPE     29     13     12     20      8     19     12
D31V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               14                 29
  CLUS_2               14                 13
  CLUS_3                0                 12
  CLUS_4                4                 20
  CLUS_5                0                  8
  CLUS_6                4                 19
  CLUS_7                1                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       18     13      6
  19P GAIN WILD-TYPE     33     44     36
D31V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               18                 33
  CLUS_2               13                 44
  CLUS_3                6                 36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       28      3      6
  19P GAIN WILD-TYPE     42     35     36
D31V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               28                 42
  CLUS_2                3                 35
  CLUS_3                6                 36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       27      5      5
  19P GAIN WILD-TYPE     42     31     40
D31V9, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               27                 42
  CLUS_2                5                 31
  CLUS_3                5                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P GAIN MUTATED       10     18      3      3      1      2
  19P GAIN WILD-TYPE     24     18     16     24     18     13
D31V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               10                 24
  CLUS_2               18                 18
  CLUS_3                3                 16
  CLUS_4                3                 24
  CLUS_5                1                 18
  CLUS_6                2                 13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        8     16      3      2
  19Q GAIN WILD-TYPE     40     18     51     12
D32V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                8                 40
  CLUS_2               16                 18
  CLUS_3                3                 51
  CLUS_4                2                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       10      9      1      9
  19Q GAIN WILD-TYPE     35     11     33     42
D32V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               10                 35
  CLUS_2                9                 11
  CLUS_3                1                 33
  CLUS_4                9                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED       18      0      1      4      1
  19Q GAIN WILD-TYPE     27      8      9     33     17
D32V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               18                 27
  CLUS_2                0                  8
  CLUS_3                1                  9
  CLUS_4                4                 33
  CLUS_5                1                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       18      2      4
  19Q GAIN WILD-TYPE     33     23     38
D32V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               18                 33
  CLUS_2                2                 23
  CLUS_3                4                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q GAIN MUTATED       10     13      1      3      1      1      0
  19Q GAIN WILD-TYPE     24     17     32     19      7     21      1
D32V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               10                 24
  CLUS_2               13                 17
  CLUS_3                1                 32
  CLUS_4                3                 19
  CLUS_5                1                  7
  CLUS_6                1                 21
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q GAIN MUTATED       11     13      0      3      0      1      1
  19Q GAIN WILD-TYPE     32     14     12     21      8     22     12
D32V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               11                 32
  CLUS_2               13                 14
  CLUS_3                0                 12
  CLUS_4                3                 21
  CLUS_5                0                  8
  CLUS_6                1                 22
  CLUS_7                1                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       13     12      4
  19Q GAIN WILD-TYPE     38     45     38
D32V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               13                 38
  CLUS_2               12                 45
  CLUS_3                4                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       24      1      4
  19Q GAIN WILD-TYPE     46     37     38
D32V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               24                 46
  CLUS_2                1                 37
  CLUS_3                4                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       23      2      4
  19Q GAIN WILD-TYPE     46     34     41
D32V9, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               23                 46
  CLUS_2                2                 34
  CLUS_3                4                 41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q GAIN MUTATED        8     16      1      3      0      1
  19Q GAIN WILD-TYPE     26     20     18     24     19     14
D32V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                8                 26
  CLUS_2               16                 20
  CLUS_3                1                 18
  CLUS_4                3                 24
  CLUS_5                0                 19
  CLUS_6                1                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        5      7     17      6
  20P GAIN WILD-TYPE     43     27     37      8
D33V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                5                 43
  CLUS_2                7                 27
  CLUS_3               17                 37
  CLUS_4                6                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        4      4      8     19
  20P GAIN WILD-TYPE     41     16     26     32
D33V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                4                 41
  CLUS_2                4                 16
  CLUS_3                8                 26
  CLUS_4               19                 32
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED        7      1      2     13      6
  20P GAIN WILD-TYPE     38      7      8     24     12
D33V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                7                 38
  CLUS_2                1                  7
  CLUS_3                2                  8
  CLUS_4               13                 24
  CLUS_5                6                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        8      8     13
  20P GAIN WILD-TYPE     43     17     29
D33V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                8                 43
  CLUS_2                8                 17
  CLUS_3               13                 29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P GAIN MUTATED        6      5      7      4      2     11      0
  20P GAIN WILD-TYPE     28     25     26     18      6     11      1
D33V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                6                 28
  CLUS_2                5                 25
  CLUS_3                7                 26
  CLUS_4                4                 18
  CLUS_5                2                  6
  CLUS_6               11                 11
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P GAIN MUTATED        8      4      3      8      1      5      6
  20P GAIN WILD-TYPE     35     23      9     16      7     18      7
D33V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                8                 35
  CLUS_2                4                 23
  CLUS_3                3                  9
  CLUS_4                8                 16
  CLUS_5                1                  7
  CLUS_6                5                 18
  CLUS_7                6                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       10     11     14
  20P GAIN WILD-TYPE     41     46     28
D33V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               10                 41
  CLUS_2               11                 46
  CLUS_3               14                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       12      9     14
  20P GAIN WILD-TYPE     58     29     28
D33V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               12                 58
  CLUS_2                9                 29
  CLUS_3               14                 28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       12      7     16
  20P GAIN WILD-TYPE     57     29     29
D33V9, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               12                 57
  CLUS_2                7                 29
  CLUS_3               16                 29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P GAIN MUTATED        4      8      3     11      5      4
  20P GAIN WILD-TYPE     30     28     16     16     14     11
D33V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                4                 30
  CLUS_2                8                 28
  CLUS_3                3                 16
  CLUS_4               11                 16
  CLUS_5                5                 14
  CLUS_6                4                 11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        8      7     20      6
  20Q GAIN WILD-TYPE     40     27     34      8
D34V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                8                 40
  CLUS_2                7                 27
  CLUS_3               20                 34
  CLUS_4                6                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        5      3     12     21
  20Q GAIN WILD-TYPE     40     17     22     30
D34V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                5                 40
  CLUS_2                3                 17
  CLUS_3               12                 22
  CLUS_4               21                 30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED        7      1      3     13      9
  20Q GAIN WILD-TYPE     38      7      7     24      9
D34V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                7                 38
  CLUS_2                1                  7
  CLUS_3                3                  7
  CLUS_4               13                 24
  CLUS_5                9                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        8     10     15
  20Q GAIN WILD-TYPE     43     15     27
D34V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                8                 43
  CLUS_2               10                 15
  CLUS_3               15                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q GAIN MUTATED        6      5     10      4      2     14      0
  20Q GAIN WILD-TYPE     28     25     23     18      6      8      1
D34V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                6                 28
  CLUS_2                5                 25
  CLUS_3               10                 23
  CLUS_4                4                 18
  CLUS_5                2                  6
  CLUS_6               14                  8
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q GAIN MUTATED        8      4      3      9      2      7      8
  20Q GAIN WILD-TYPE     35     23      9     15      6     16      5
D34V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                8                 35
  CLUS_2                4                 23
  CLUS_3                3                  9
  CLUS_4                9                 15
  CLUS_5                2                  6
  CLUS_6                7                 16
  CLUS_7                8                  5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       10     13     18
  20Q GAIN WILD-TYPE     41     44     24
D34V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               10                 41
  CLUS_2               13                 44
  CLUS_3               18                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       12     11     18
  20Q GAIN WILD-TYPE     58     27     24
D34V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               12                 58
  CLUS_2               11                 27
  CLUS_3               18                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       12     10     19
  20Q GAIN WILD-TYPE     57     26     26
D34V9, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               12                 57
  CLUS_2               10                 26
  CLUS_3               19                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q GAIN MUTATED        4      8      5     11      6      7
  20Q GAIN WILD-TYPE     30     28     14     16     13      8
D34V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                4                 30
  CLUS_2                8                 28
  CLUS_3                5                 14
  CLUS_4               11                 16
  CLUS_5                6                 13
  CLUS_6                7                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = 21Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED       38     32     46     10
  21Q GAIN WILD-TYPE     10      2      8      4
D35V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               38                 10
  CLUS_2               32                  2
  CLUS_3               46                  8
  CLUS_4               10                  4
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED       41     16     25     44
  21Q GAIN WILD-TYPE      4      4      9      7
D35V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               41                  4
  CLUS_2               16                  4
  CLUS_3               25                  9
  CLUS_4               44                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED       41      6      6     30     16
  21Q GAIN WILD-TYPE      4      2      4      7      2
D35V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               41                  4
  CLUS_2                6                  2
  CLUS_3                6                  4
  CLUS_4               30                  7
  CLUS_5               16                  2
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       45     20     34
  21Q GAIN WILD-TYPE      6      5      8
D35V4, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               45                  6
  CLUS_2               20                  5
  CLUS_3               34                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q GAIN MUTATED       32     27     25     18      6     18      0
  21Q GAIN WILD-TYPE      2      3      8      4      2      4      1
D35V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               32                  2
  CLUS_2               27                  3
  CLUS_3               25                  8
  CLUS_4               18                  4
  CLUS_5                6                  2
  CLUS_6               18                  4
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  21Q GAIN MUTATED       39     24      8     20      5     19     11
  21Q GAIN WILD-TYPE      4      3      4      4      3      4      2
D35V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               39                  4
  CLUS_2               24                  3
  CLUS_3                8                  4
  CLUS_4               20                  4
  CLUS_5                5                  3
  CLUS_6               19                  4
  CLUS_7               11                  2
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       46     45     35
  21Q GAIN WILD-TYPE      5     12      7
D35V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               46                  5
  CLUS_2               45                 12
  CLUS_3               35                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       63     28     35
  21Q GAIN WILD-TYPE      7     10      7
D35V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               63                  7
  CLUS_2               28                 10
  CLUS_3               35                  7
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       62     28     36
  21Q GAIN WILD-TYPE      7      8      9
D35V9, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               62                  7
  CLUS_2               28                  8
  CLUS_3               36                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  21Q GAIN MUTATED       30     33     15     21     13     14
  21Q GAIN WILD-TYPE      4      3      4      6      6      1
D35V10, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               30                  4
  CLUS_2               33                  3
  CLUS_3               15                  4
  CLUS_4               21                  6
  CLUS_5               13                  6
  CLUS_6               14                  1
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED       11     21      5      2
  22Q GAIN WILD-TYPE     37     13     49     12
D36V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               11                 37
  CLUS_2               21                 13
  CLUS_3                5                 49
  CLUS_4                2                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED       12      9      4     14
  22Q GAIN WILD-TYPE     33     11     30     37
D36V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               12                 33
  CLUS_2                9                 11
  CLUS_3                4                 30
  CLUS_4               14                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED       18      2      3      4      2
  22Q GAIN WILD-TYPE     27      6      7     33     16
D36V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               18                 27
  CLUS_2                2                  6
  CLUS_3                3                  7
  CLUS_4                4                 33
  CLUS_5                2                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       20      2      7
  22Q GAIN WILD-TYPE     31     23     35
D36V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               20                 31
  CLUS_2                2                 23
  CLUS_3                7                 35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q GAIN MUTATED        9     20      2      4      1      3      0
  22Q GAIN WILD-TYPE     25     10     31     18      7     19      1
D36V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                9                 25
  CLUS_2               20                 10
  CLUS_3                2                 31
  CLUS_4                4                 18
  CLUS_5                1                  7
  CLUS_6                3                 19
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q GAIN MUTATED       12     18      1      4      1      1      2
  22Q GAIN WILD-TYPE     31      9     11     20      7     22     11
D36V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               12                 31
  CLUS_2               18                  9
  CLUS_3                1                 11
  CLUS_4                4                 20
  CLUS_5                1                  7
  CLUS_6                1                 22
  CLUS_7                2                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       17     16      6
  22Q GAIN WILD-TYPE     34     41     36
D36V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               17                 34
  CLUS_2               16                 41
  CLUS_3                6                 36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       30      3      6
  22Q GAIN WILD-TYPE     40     35     36
D36V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               30                 40
  CLUS_2                3                 35
  CLUS_3                6                 36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       29      4      6
  22Q GAIN WILD-TYPE     40     32     39
D36V9, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               29                 40
  CLUS_2                4                 32
  CLUS_3                6                 39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q GAIN MUTATED        9     21      1      4      2      2
  22Q GAIN WILD-TYPE     25     15     18     23     17     13
D36V10, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                9                 25
  CLUS_2               21                 15
  CLUS_3                1                 18
  CLUS_4                4                 23
  CLUS_5                2                 17
  CLUS_6                2                 13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(37) Variable = XP GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED        4      3     14      1
  XP GAIN WILD-TYPE     44     31     40     13
D37V1, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               4                44
  CLUS_2               3                31
  CLUS_3              14                40
  CLUS_4               1                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP GAIN MUTATED        2      1      7     12
  XP GAIN WILD-TYPE     43     19     27     39
D37V2, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               2                43
  CLUS_2               1                19
  CLUS_3               7                27
  CLUS_4              12                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP GAIN MUTATED        3      0      2     10      5
  XP GAIN WILD-TYPE     42      8      8     27     13
D37V3, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               3                42
  CLUS_2               0                 8
  CLUS_3               2                 8
  CLUS_4              10                27
  CLUS_5               5                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED        3      5     12
  XP GAIN WILD-TYPE     48     20     30
D37V4, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               3                48
  CLUS_2               5                20
  CLUS_3              12                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP GAIN MUTATED        2      1      5      5      0      9      0
  XP GAIN WILD-TYPE     32     29     28     17      8     13      1
D37V5, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               1                29
  CLUS_3               5                28
  CLUS_4               5                17
  CLUS_5               0                 8
  CLUS_6               9                13
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP GAIN MUTATED        2      1      3      7      0      4      5
  XP GAIN WILD-TYPE     41     26      9     17      8     19      8
D37V6, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               2                41
  CLUS_2               1                26
  CLUS_3               3                 9
  CLUS_4               7                17
  CLUS_5               0                 8
  CLUS_6               4                19
  CLUS_7               5                 8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED        2      6     14
  XP GAIN WILD-TYPE     49     51     28
D37V7, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               2                49
  CLUS_2               6                51
  CLUS_3              14                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED        3      5     14
  XP GAIN WILD-TYPE     67     33     28
D37V8, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               3                67
  CLUS_2               5                33
  CLUS_3              14                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP GAIN MUTATED        3      7     12
  XP GAIN WILD-TYPE     66     29     33
D37V9, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               3                66
  CLUS_2               7                29
  CLUS_3              12                33
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XP GAIN MUTATED        2      1      6     11      1      1
  XP GAIN WILD-TYPE     32     35     13     16     18     14
D37V10, multiclass
        clus
vv       XP GAIN MUTATED XP GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               1                35
  CLUS_3               6                13
  CLUS_4              11                16
  CLUS_5               1                18
  CLUS_6               1                14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(38) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        6      3     12      2
  XQ GAIN WILD-TYPE     42     31     42     12
D38V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               6                42
  CLUS_2               3                31
  CLUS_3              12                42
  CLUS_4               2                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        3      1      7     12
  XQ GAIN WILD-TYPE     42     19     27     39
D38V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               3                42
  CLUS_2               1                19
  CLUS_3               7                27
  CLUS_4              12                39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        3      1      4      8      5
  XQ GAIN WILD-TYPE     42      7      6     29     13
D38V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               3                42
  CLUS_2               1                 7
  CLUS_3               4                 6
  CLUS_4               8                29
  CLUS_5               5                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        3      6     12
  XQ GAIN WILD-TYPE     48     19     30
D38V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               3                48
  CLUS_2               6                19
  CLUS_3              12                30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ GAIN MUTATED        2      1      7      5      0      8      0
  XQ GAIN WILD-TYPE     32     29     26     17      8     14      1
D38V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               1                29
  CLUS_3               7                26
  CLUS_4               5                17
  CLUS_5               0                 8
  CLUS_6               8                14
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ GAIN MUTATED        2      1      3      7      0      5      5
  XQ GAIN WILD-TYPE     41     26      9     17      8     18      8
D38V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                41
  CLUS_2               1                26
  CLUS_3               3                 9
  CLUS_4               7                17
  CLUS_5               0                 8
  CLUS_6               5                18
  CLUS_7               5                 8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        2      8     13
  XQ GAIN WILD-TYPE     49     49     29
D38V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                49
  CLUS_2               8                49
  CLUS_3              13                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        3      7     13
  XQ GAIN WILD-TYPE     67     31     29
D38V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               3                67
  CLUS_2               7                31
  CLUS_3              13                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        3      7     13
  XQ GAIN WILD-TYPE     66     29     32
D38V9, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               3                66
  CLUS_2               7                29
  CLUS_3              13                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ GAIN MUTATED        2      1      5     11      2      2
  XQ GAIN WILD-TYPE     32     35     14     16     17     13
D38V10, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               2                32
  CLUS_2               1                35
  CLUS_3               5                14
  CLUS_4              11                16
  CLUS_5               2                17
  CLUS_6               2                13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(39) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        3      7      6      4
  1P LOSS WILD-TYPE     45     27     48     10
D39V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               3                45
  CLUS_2               7                27
  CLUS_3               6                48
  CLUS_4               4                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        6      3      2      9
  1P LOSS WILD-TYPE     39     17     32     42
D39V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               6                39
  CLUS_2               3                17
  CLUS_3               2                32
  CLUS_4               9                42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        9      0      0      4      1
  1P LOSS WILD-TYPE     36      8     10     33     17
D39V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               9                36
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               4                33
  CLUS_5               1                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        9      2      3
  1P LOSS WILD-TYPE     42     23     39
D39V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               9                42
  CLUS_2               2                23
  CLUS_3               3                39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P LOSS MUTATED        6      6      2      5      0      1      0
  1P LOSS WILD-TYPE     28     24     31     17      8     21      1
D39V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               6                28
  CLUS_2               6                24
  CLUS_3               2                31
  CLUS_4               5                17
  CLUS_5               0                 8
  CLUS_6               1                21
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1P LOSS MUTATED        7      5      1      4      0      2      1
  1P LOSS WILD-TYPE     36     22     11     20      8     21     12
D39V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               7                36
  CLUS_2               5                22
  CLUS_3               1                11
  CLUS_4               4                20
  CLUS_5               0                 8
  CLUS_6               2                21
  CLUS_7               1                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       11      3      6
  1P LOSS WILD-TYPE     40     54     36
D39V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              11                40
  CLUS_2               3                54
  CLUS_3               6                36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       12      2      6
  1P LOSS WILD-TYPE     58     36     36
D39V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12                58
  CLUS_2               2                36
  CLUS_3               6                36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       12      1      7
  1P LOSS WILD-TYPE     57     35     38
D39V9, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12                57
  CLUS_2               1                35
  CLUS_3               7                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P LOSS MUTATED        5      7      1      4      1      2
  1P LOSS WILD-TYPE     29     29     18     23     18     13
D39V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               5                29
  CLUS_2               7                29
  CLUS_3               1                18
  CLUS_4               4                23
  CLUS_5               1                18
  CLUS_6               2                13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(40) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        1      1      5      2
  1Q LOSS WILD-TYPE     47     33     49     12
D40V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1                47
  CLUS_2               1                33
  CLUS_3               5                49
  CLUS_4               2                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        1      1      2      5
  1Q LOSS WILD-TYPE     44     19     32     46
D40V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1                44
  CLUS_2               1                19
  CLUS_3               2                32
  CLUS_4               5                46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        3      0      0      4      1
  1Q LOSS WILD-TYPE     42      8     10     33     17
D40V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                42
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               4                33
  CLUS_5               1                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        3      2      3
  1Q LOSS WILD-TYPE     48     23     39
D40V4, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                48
  CLUS_2               2                23
  CLUS_3               3                39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q LOSS MUTATED        1      2      2      3      0      1      0
  1Q LOSS WILD-TYPE     33     28     31     19      8     21      1
D40V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1                33
  CLUS_2               2                28
  CLUS_3               2                31
  CLUS_4               3                19
  CLUS_5               0                 8
  CLUS_6               1                21
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  1Q LOSS MUTATED        1      2      1      3      0      1      1
  1Q LOSS WILD-TYPE     42     25     11     21      8     22     12
D40V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1                42
  CLUS_2               2                25
  CLUS_3               1                11
  CLUS_4               3                21
  CLUS_5               0                 8
  CLUS_6               1                22
  CLUS_7               1                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        2      3      4
  1Q LOSS WILD-TYPE     49     54     38
D40V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               2                49
  CLUS_2               3                54
  CLUS_3               4                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        3      2      4
  1Q LOSS WILD-TYPE     67     36     38
D40V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                67
  CLUS_2               2                36
  CLUS_3               4                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        3      1      5
  1Q LOSS WILD-TYPE     66     35     40
D40V9, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                66
  CLUS_2               1                35
  CLUS_3               5                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q LOSS MUTATED        1      2      1      3      1      1
  1Q LOSS WILD-TYPE     33     34     18     24     18     14
D40V10, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               1                33
  CLUS_2               2                34
  CLUS_3               1                18
  CLUS_4               3                24
  CLUS_5               1                18
  CLUS_6               1                14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(41) Variable = 2P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        1      1      2      0
  2P LOSS WILD-TYPE     47     33     52     14
D41V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                47
  CLUS_2               1                33
  CLUS_3               2                52
  CLUS_4               0                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        2      0      1      1
  2P LOSS WILD-TYPE     43     20     33     50
D41V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                43
  CLUS_2               0                20
  CLUS_3               1                33
  CLUS_4               1                50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED        1      0      0      0      0
  2P LOSS WILD-TYPE     44      8     10     37     18
D41V3, multiclass
[1] "Remove cluster labels:" "2P LOSS MUTATED"       
clus
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                1               117 
       TCGA-2G-AAEW        TCGA-2G-AAEX        TCGA-2G-AAF1        TCGA-2G-AAF4 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAF6        TCGA-2G-AAF8        TCGA-2G-AAFG        TCGA-2G-AAFI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAFJ        TCGA-2G-AAFL        TCGA-2G-AAFM        TCGA-2G-AAFN 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAFY        TCGA-2G-AAFZ        TCGA-2G-AAG0        TCGA-2G-AAG3 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAG5        TCGA-2G-AAG6        TCGA-2G-AAG7        TCGA-2G-AAG8 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAG9        TCGA-2G-AAGC        TCGA-2G-AAGF        TCGA-2G-AAGG 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAGI        TCGA-2G-AAGJ        TCGA-2G-AAGK        TCGA-2G-AAGM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAGN        TCGA-2G-AAGO        TCGA-2G-AAGP        TCGA-2G-AAGS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAGT        TCGA-2G-AAGV        TCGA-2G-AAGW        TCGA-2G-AAGX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAGY        TCGA-2G-AAGZ        TCGA-2G-AAH0        TCGA-2G-AAH3 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAH4        TCGA-2G-AAH8        TCGA-2G-AAHA        TCGA-2G-AAHC 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAHG        TCGA-2G-AAHL        TCGA-2G-AAHP        TCGA-2G-AAHT 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAKG        TCGA-2G-AAKH        TCGA-2G-AAKL        TCGA-2G-AAKM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAKO        TCGA-2G-AAL5        TCGA-2G-AAL7        TCGA-2G-AALF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AALG        TCGA-2G-AALN        TCGA-2G-AALO        TCGA-2G-AALP 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AALQ        TCGA-2G-AALS        TCGA-2G-AALT        TCGA-2G-AALW 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AALX        TCGA-2G-AALZ        TCGA-2G-AAM2        TCGA-2G-AAM3 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAM4        TCGA-2X-A9D5        TCGA-2X-A9D6        TCGA-4K-AA1G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-4K-AA1H        TCGA-4K-AA1I        TCGA-S6-A8JW        TCGA-S6-A8JX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-S6-A8JY        TCGA-SN-A6IS        TCGA-SN-A84X        TCGA-SO-A8JP 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-VF-A8A8        TCGA-VF-A8A9        TCGA-VF-A8AA        TCGA-VF-A8AE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-W4-A7U2        TCGA-W4-A7U3        TCGA-W4-A7U4        TCGA-X3-A8G4 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-XE-A8H1        TCGA-XE-A8H5        TCGA-XE-A9SE        TCGA-XE-AANI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-XE-AANJ        TCGA-XE-AANR        TCGA-XE-AANV        TCGA-XE-AAO3 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-XE-AAO4        TCGA-XE-AAO6        TCGA-XE-AAOB        TCGA-XE-AAOC 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-XE-AAOD        TCGA-XE-AAOF        TCGA-XE-AAOJ        TCGA-XE-AAOL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-XY-A89B        TCGA-XY-A9T9        TCGA-YU-A90P        TCGA-YU-A90Q 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-YU-A90S        TCGA-YU-A90W        TCGA-YU-A90Y        TCGA-YU-A912 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-YU-A94I        TCGA-YU-AA61        TCGA-ZM-AA05        TCGA-ZM-AA0B 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-ZM-AA0E 
"2P LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        1      0      0
  2P LOSS WILD-TYPE     50     25     42
D41V4, multiclass
[1] "Remove cluster labels:" "2P LOSS MUTATED"       
clus
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                1               117 
       TCGA-2G-AAEW        TCGA-2G-AAEX        TCGA-2G-AAF1        TCGA-2G-AAF4 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAF6        TCGA-2G-AAF8        TCGA-2G-AAFG        TCGA-2G-AAFI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAFJ        TCGA-2G-AAFL        TCGA-2G-AAFM        TCGA-2G-AAFN 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAFY        TCGA-2G-AAFZ        TCGA-2G-AAG0        TCGA-2G-AAG3 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAG5        TCGA-2G-AAG6        TCGA-2G-AAG7        TCGA-2G-AAG8 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAG9        TCGA-2G-AAGC        TCGA-2G-AAGF        TCGA-2G-AAGG 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAGI        TCGA-2G-AAGJ        TCGA-2G-AAGK        TCGA-2G-AAGM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAGN        TCGA-2G-AAGO        TCGA-2G-AAGP        TCGA-2G-AAGS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAGT        TCGA-2G-AAGV        TCGA-2G-AAGW        TCGA-2G-AAGX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAGY        TCGA-2G-AAGZ        TCGA-2G-AAH0        TCGA-2G-AAH3 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAH4        TCGA-2G-AAH8        TCGA-2G-AAHA        TCGA-2G-AAHC 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAHG        TCGA-2G-AAHL        TCGA-2G-AAHP        TCGA-2G-AAHT 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAKG        TCGA-2G-AAKH        TCGA-2G-AAKL        TCGA-2G-AAKM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAKO        TCGA-2G-AAL5        TCGA-2G-AAL7        TCGA-2G-AALF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AALG        TCGA-2G-AALN        TCGA-2G-AALO        TCGA-2G-AALP 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AALQ        TCGA-2G-AALS        TCGA-2G-AALT        TCGA-2G-AALW 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AALX        TCGA-2G-AALZ        TCGA-2G-AAM2        TCGA-2G-AAM3 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-2G-AAM4        TCGA-2X-A9D5        TCGA-2X-A9D6        TCGA-4K-AA1G 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-4K-AA1H        TCGA-4K-AA1I        TCGA-S6-A8JW        TCGA-S6-A8JX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-S6-A8JY        TCGA-SN-A6IS        TCGA-SN-A84X        TCGA-SO-A8JP 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-VF-A8A8        TCGA-VF-A8A9        TCGA-VF-A8AA        TCGA-VF-A8AE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-W4-A7U2        TCGA-W4-A7U3        TCGA-W4-A7U4        TCGA-X3-A8G4 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-XE-A8H1        TCGA-XE-A8H5        TCGA-XE-A9SE        TCGA-XE-AANI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-XE-AANJ        TCGA-XE-AANR        TCGA-XE-AANV        TCGA-XE-AAO3 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-XE-AAO4        TCGA-XE-AAO6        TCGA-XE-AAOB        TCGA-XE-AAOC 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-XE-AAOD        TCGA-XE-AAOF        TCGA-XE-AAOJ        TCGA-XE-AAOL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-XY-A89B        TCGA-XY-A9T9        TCGA-YU-A90P        TCGA-YU-A90Q 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-YU-A90S        TCGA-YU-A90W        TCGA-YU-A90Y        TCGA-YU-A912 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-YU-A94I        TCGA-YU-AA61        TCGA-ZM-AA05        TCGA-ZM-AA0B 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-ZM-AA0E 
"2P LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P LOSS MUTATED        1      1      1      1      0      0      0
  2P LOSS WILD-TYPE     33     29     32     21      8     22      1
D41V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                33
  CLUS_2               1                29
  CLUS_3               1                32
  CLUS_4               1                21
  CLUS_5               0                 8
  CLUS_6               0                22
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2P LOSS MUTATED        2      0      0      1      0      1      0
  2P LOSS WILD-TYPE     41     27     12     23      8     22     13
D41V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                41
  CLUS_2               0                27
  CLUS_3               0                12
  CLUS_4               1                23
  CLUS_5               0                 8
  CLUS_6               1                22
  CLUS_7               0                13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        1      2      1
  2P LOSS WILD-TYPE     50     55     41
D41V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                50
  CLUS_2               2                55
  CLUS_3               1                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        2      1      1
  2P LOSS WILD-TYPE     68     37     41
D41V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                68
  CLUS_2               1                37
  CLUS_3               1                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        2      1      1
  2P LOSS WILD-TYPE     67     35     44
D41V9, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                67
  CLUS_2               1                35
  CLUS_3               1                44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P LOSS MUTATED        1      1      1      0      0      1
  2P LOSS WILD-TYPE     33     35     18     27     19     14
D41V10, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                33
  CLUS_2               1                35
  CLUS_3               1                18
  CLUS_4               0                27
  CLUS_5               0                19
  CLUS_6               1                14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(42) Variable = 2Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        1      1      3      0
  2Q LOSS WILD-TYPE     47     33     51     14
D42V1, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                47
  CLUS_2               1                33
  CLUS_3               3                51
  CLUS_4               0                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        1      0      1      3
  2Q LOSS WILD-TYPE     44     20     33     48
D42V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                44
  CLUS_2               0                20
  CLUS_3               1                33
  CLUS_4               3                48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED        1      0      0      2      0
  2Q LOSS WILD-TYPE     44      8     10     35     18
D42V3, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                44
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               2                35
  CLUS_5               0                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        1      0      2
  2Q LOSS WILD-TYPE     50     25     40
D42V4, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                50
  CLUS_2               0                25
  CLUS_3               2                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q LOSS MUTATED        1      0      1      2      0      1      0
  2Q LOSS WILD-TYPE     33     30     32     20      8     21      1
D42V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                33
  CLUS_2               0                30
  CLUS_3               1                32
  CLUS_4               2                20
  CLUS_5               0                 8
  CLUS_6               1                21
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  2Q LOSS MUTATED        1      0      1      1      0      1      1
  2Q LOSS WILD-TYPE     42     27     11     23      8     22     12
D42V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                42
  CLUS_2               0                27
  CLUS_3               1                11
  CLUS_4               1                23
  CLUS_5               0                 8
  CLUS_6               1                22
  CLUS_7               1                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        1      2      2
  2Q LOSS WILD-TYPE     50     55     40
D42V7, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                50
  CLUS_2               2                55
  CLUS_3               2                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        1      2      2
  2Q LOSS WILD-TYPE     69     36     40
D42V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                69
  CLUS_2               2                36
  CLUS_3               2                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        1      1      3
  2Q LOSS WILD-TYPE     68     35     42
D42V9, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                68
  CLUS_2               1                35
  CLUS_3               3                42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q LOSS MUTATED        1      0      2      1      0      1
  2Q LOSS WILD-TYPE     33     36     17     26     19     14
D42V10, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                33
  CLUS_2               0                36
  CLUS_3               2                17
  CLUS_4               1                26
  CLUS_5               0                19
  CLUS_6               1                14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(43) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        9      5     10      7
  3P LOSS WILD-TYPE     39     29     44      7
D43V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               9                39
  CLUS_2               5                29
  CLUS_3              10                44
  CLUS_4               7                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED       12      4     12      3
  3P LOSS WILD-TYPE     33     16     22     48
D43V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              12                33
  CLUS_2               4                16
  CLUS_3              12                22
  CLUS_4               3                48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED        8      3      2      1      5
  3P LOSS WILD-TYPE     37      5      8     36     13
D43V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               8                37
  CLUS_2               3                 5
  CLUS_3               2                 8
  CLUS_4               1                36
  CLUS_5               5                13
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       11      2      6
  3P LOSS WILD-TYPE     40     23     36
D43V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              11                40
  CLUS_2               2                23
  CLUS_3               6                36
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P LOSS MUTATED       11      5     11      1      3      0      0
  3P LOSS WILD-TYPE     23     25     22     21      5     22      1
D43V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              11                23
  CLUS_2               5                25
  CLUS_3              11                22
  CLUS_4               1                21
  CLUS_5               3                 5
  CLUS_6               0                22
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3P LOSS MUTATED       14      4      1      1      1     10      0
  3P LOSS WILD-TYPE     29     23     11     23      7     13     13
D43V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              14                29
  CLUS_2               4                23
  CLUS_3               1                11
  CLUS_4               1                23
  CLUS_5               1                 7
  CLUS_6              10                13
  CLUS_7               0                13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       13     17      1
  3P LOSS WILD-TYPE     38     40     41
D43V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              13                38
  CLUS_2              17                40
  CLUS_3               1                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       18     12      1
  3P LOSS WILD-TYPE     52     26     41
D43V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              18                52
  CLUS_2              12                26
  CLUS_3               1                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       18     11      2
  3P LOSS WILD-TYPE     51     25     43
D43V9, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              18                51
  CLUS_2              11                25
  CLUS_3               2                43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P LOSS MUTATED       11      7      3      0      9      1
  3P LOSS WILD-TYPE     23     29     16     27     10     14
D43V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              11                23
  CLUS_2               7                29
  CLUS_3               3                16
  CLUS_4               0                27
  CLUS_5               9                10
  CLUS_6               1                14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(44) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        7      5      9      2
  3Q LOSS WILD-TYPE     41     29     45     12
D44V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7                41
  CLUS_2               5                29
  CLUS_3               9                45
  CLUS_4               2                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED       10      3      6      4
  3Q LOSS WILD-TYPE     35     17     28     47
D44V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              10                35
  CLUS_2               3                17
  CLUS_3               6                28
  CLUS_4               4                47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        7      3      1      1      3
  3Q LOSS WILD-TYPE     38      5      9     36     15
D44V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7                38
  CLUS_2               3                 5
  CLUS_3               1                 9
  CLUS_4               1                36
  CLUS_5               3                15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       10      1      4
  3Q LOSS WILD-TYPE     41     24     38
D44V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              10                41
  CLUS_2               1                24
  CLUS_3               4                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q LOSS MUTATED       10      4      6      2      1      0      0
  3Q LOSS WILD-TYPE     24     26     27     20      7     22      1
D44V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              10                24
  CLUS_2               4                26
  CLUS_3               6                27
  CLUS_4               2                20
  CLUS_5               1                 7
  CLUS_6               0                22
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  3Q LOSS MUTATED       12      3      0      2      0      6      0
  3Q LOSS WILD-TYPE     31     24     12     22      8     17     13
D44V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              12                31
  CLUS_2               3                24
  CLUS_3               0                12
  CLUS_4               2                22
  CLUS_5               0                 8
  CLUS_6               6                17
  CLUS_7               0                13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       11     10      2
  3Q LOSS WILD-TYPE     40     47     40
D44V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              11                40
  CLUS_2              10                47
  CLUS_3               2                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       15      6      2
  3Q LOSS WILD-TYPE     55     32     40
D44V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              15                55
  CLUS_2               6                32
  CLUS_3               2                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       15      6      2
  3Q LOSS WILD-TYPE     54     30     43
D44V9, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              15                54
  CLUS_2               6                30
  CLUS_3               2                43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q LOSS MUTATED        9      6      2      1      4      1
  3Q LOSS WILD-TYPE     25     30     17     26     15     14
D44V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               9                25
  CLUS_2               6                30
  CLUS_3               2                17
  CLUS_4               1                26
  CLUS_5               4                15
  CLUS_6               1                14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(45) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       27     20     35     12
  4P LOSS WILD-TYPE     21     14     19      2
D45V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              27                21
  CLUS_2              20                14
  CLUS_3              35                19
  CLUS_4              12                 2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       28     17     24     25
  4P LOSS WILD-TYPE     17      3     10     26
D45V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              28                17
  CLUS_2              17                 3
  CLUS_3              24                10
  CLUS_4              25                26
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED       29      7      4     22     12
  4P LOSS WILD-TYPE     16      1      6     15      6
D45V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              29                16
  CLUS_2               7                 1
  CLUS_3               4                 6
  CLUS_4              22                15
  CLUS_5              12                 6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       34     14     26
  4P LOSS WILD-TYPE     17     11     16
D45V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              34                17
  CLUS_2              14                11
  CLUS_3              26                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P LOSS MUTATED       20     23     25      9      3     13      1
  4P LOSS WILD-TYPE     14      7      8     13      5      9      0
D45V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              20                14
  CLUS_2              23                 7
  CLUS_3              25                 8
  CLUS_4               9                13
  CLUS_5               3                 5
  CLUS_6              13                 9
  CLUS_7               1                 0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4P LOSS MUTATED       25     21      9     10      6     17      6
  4P LOSS WILD-TYPE     18      6      3     14      2      6      7
D45V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              25                18
  CLUS_2              21                 6
  CLUS_3               9                 3
  CLUS_4              10                14
  CLUS_5               6                 2
  CLUS_6              17                 6
  CLUS_7               6                 7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       31     43     20
  4P LOSS WILD-TYPE     20     14     22
D45V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              31                20
  CLUS_2              43                14
  CLUS_3              20                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       46     28     20
  4P LOSS WILD-TYPE     24     10     22
D45V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              46                24
  CLUS_2              28                10
  CLUS_3              20                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       46     26     22
  4P LOSS WILD-TYPE     23     10     23
D45V9, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              46                23
  CLUS_2              26                10
  CLUS_3              22                23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P LOSS MUTATED       21     25     12      9     15     12
  4P LOSS WILD-TYPE     13     11      7     18      4      3
D45V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              21                13
  CLUS_2              25                11
  CLUS_3              12                 7
  CLUS_4               9                18
  CLUS_5              15                 4
  CLUS_6              12                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(46) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       29     27     40     13
  4Q LOSS WILD-TYPE     19      7     14      1
D46V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              29                19
  CLUS_2              27                 7
  CLUS_3              40                14
  CLUS_4              13                 1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       31     18     28     32
  4Q LOSS WILD-TYPE     14      2      6     19
D46V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              31                14
  CLUS_2              18                 2
  CLUS_3              28                 6
  CLUS_4              32                19
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED       32      6      5     26     15
  4Q LOSS WILD-TYPE     13      2      5     11      3
D46V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              32                13
  CLUS_2               6                 2
  CLUS_3               5                 5
  CLUS_4              26                11
  CLUS_5              15                 3
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       36     16     32
  4Q LOSS WILD-TYPE     15      9     10
D46V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              36                15
  CLUS_2              16                 9
  CLUS_3              32                10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q LOSS MUTATED       21     26     29     14      5     13      1
  4Q LOSS WILD-TYPE     13      4      4      8      3      9      0
D46V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              21                13
  CLUS_2              26                 4
  CLUS_3              29                 4
  CLUS_4              14                 8
  CLUS_5               5                 3
  CLUS_6              13                 9
  CLUS_7               1                 0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  4Q LOSS MUTATED       27     24     10     13      7     21      7
  4Q LOSS WILD-TYPE     16      3      2     11      1      2      6
D46V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              27                16
  CLUS_2              24                 3
  CLUS_3              10                 2
  CLUS_4              13                11
  CLUS_5               7                 1
  CLUS_6              21                 2
  CLUS_7               7                 6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       35     50     24
  4Q LOSS WILD-TYPE     16      7     18
D46V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              35                16
  CLUS_2              50                 7
  CLUS_3              24                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       51     34     24
  4Q LOSS WILD-TYPE     19      4     18
D46V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              51                19
  CLUS_2              34                 4
  CLUS_3              24                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       51     31     27
  4Q LOSS WILD-TYPE     18      5     18
D46V9, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              51                18
  CLUS_2              31                 5
  CLUS_3              27                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q LOSS MUTATED       22     29     15     13     18     12
  4Q LOSS WILD-TYPE     12      7      4     14      1      3
D46V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              22                12
  CLUS_2              29                 7
  CLUS_3              15                 4
  CLUS_4              13                14
  CLUS_5              18                 1
  CLUS_6              12                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(47) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED       31     30     35      7
  5P LOSS WILD-TYPE     17      4     19      7
D47V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              31                17
  CLUS_2              30                 4
  CLUS_3              35                19
  CLUS_4               7                 7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED       33     17     19     34
  5P LOSS WILD-TYPE     12      3     15     17
D47V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              33                12
  CLUS_2              17                 3
  CLUS_3              19                15
  CLUS_4              34                17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED       31      7      4     27      7
  5P LOSS WILD-TYPE     14      1      6     10     11
D47V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              31                14
  CLUS_2               7                 1
  CLUS_3               4                 6
  CLUS_4              27                10
  CLUS_5               7                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       36     15     25
  5P LOSS WILD-TYPE     15     10     17
D47V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              36                15
  CLUS_2              15                10
  CLUS_3              25                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P LOSS MUTATED       24     26     19     16      4     13      1
  5P LOSS WILD-TYPE     10      4     14      6      4      9      0
D47V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              24                10
  CLUS_2              26                 4
  CLUS_3              19                14
  CLUS_4              16                 6
  CLUS_5               4                 4
  CLUS_6              13                 9
  CLUS_7               1                 0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5P LOSS MUTATED       30     24      9     15      4     13      8
  5P LOSS WILD-TYPE     13      3      3      9      4     10      5
D47V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              30                13
  CLUS_2              24                 3
  CLUS_3               9                 3
  CLUS_4              15                 9
  CLUS_5               4                 4
  CLUS_6              13                10
  CLUS_7               8                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       38     38     27
  5P LOSS WILD-TYPE     13     19     15
D47V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              38                13
  CLUS_2              38                19
  CLUS_3              27                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       54     22     27
  5P LOSS WILD-TYPE     16     16     15
D47V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              54                16
  CLUS_2              22                16
  CLUS_3              27                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       53     21     29
  5P LOSS WILD-TYPE     16     15     16
D47V9, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              53                16
  CLUS_2              21                15
  CLUS_3              29                16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P LOSS MUTATED       25     29     10     16     11     12
  5P LOSS WILD-TYPE      9      7      9     11      8      3
D47V10, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              25                 9
  CLUS_2              29                 7
  CLUS_3              10                 9
  CLUS_4              16                11
  CLUS_5              11                 8
  CLUS_6              12                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(48) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED       31     32     33      5
  5Q LOSS WILD-TYPE     17      2     21      9
D48V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              31                17
  CLUS_2              32                 2
  CLUS_3              33                21
  CLUS_4               5                 9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED       33     17     16     35
  5Q LOSS WILD-TYPE     12      3     18     16
D48V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              33                12
  CLUS_2              17                 3
  CLUS_3              16                18
  CLUS_4              35                16
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED       33      6      4     26      7
  5Q LOSS WILD-TYPE     12      2      6     11     11
D48V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              33                12
  CLUS_2               6                 2
  CLUS_3               4                 6
  CLUS_4              26                11
  CLUS_5               7                11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       37     15     24
  5Q LOSS WILD-TYPE     14     10     18
D48V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              37                14
  CLUS_2              15                10
  CLUS_3              24                18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q LOSS MUTATED       23     28     16     16      4     13      1
  5Q LOSS WILD-TYPE     11      2     17      6      4      9      0
D48V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              23                11
  CLUS_2              28                 2
  CLUS_3              16                17
  CLUS_4              16                 6
  CLUS_5               4                 4
  CLUS_6              13                 9
  CLUS_7               1                 0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  5Q LOSS MUTATED       29     26      8     15      3     12      8
  5Q LOSS WILD-TYPE     14      1      4      9      5     11      5
D48V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              29                14
  CLUS_2              26                 1
  CLUS_3               8                 4
  CLUS_4              15                 9
  CLUS_5               3                 5
  CLUS_6              12                11
  CLUS_7               8                 5
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       38     36     27
  5Q LOSS WILD-TYPE     13     21     15
D48V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              38                13
  CLUS_2              36                21
  CLUS_3              27                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       55     19     27
  5Q LOSS WILD-TYPE     15     19     15
D48V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              55                15
  CLUS_2              19                19
  CLUS_3              27                15
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       54     19     28
  5Q LOSS WILD-TYPE     15     17     17
D48V9, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              54                15
  CLUS_2              19                17
  CLUS_3              28                17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q LOSS MUTATED       25     30      9     16      9     12
  5Q LOSS WILD-TYPE      9      6     10     11     10      3
D48V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              25                 9
  CLUS_2              30                 6
  CLUS_3               9                10
  CLUS_4              16                11
  CLUS_5               9                10
  CLUS_6              12                 3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(49) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        3      1      8      1
  6P LOSS WILD-TYPE     45     33     46     13
D49V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               3                45
  CLUS_2               1                33
  CLUS_3               8                46
  CLUS_4               1                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        1      1      6      5
  6P LOSS WILD-TYPE     44     19     28     46
D49V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                44
  CLUS_2               1                19
  CLUS_3               6                28
  CLUS_4               5                46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED        2      0      0      5      3
  6P LOSS WILD-TYPE     43      8     10     32     15
D49V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               2                43
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               5                32
  CLUS_5               3                15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        2      1      7
  6P LOSS WILD-TYPE     49     24     35
D49V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               2                49
  CLUS_2               1                24
  CLUS_3               7                35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P LOSS MUTATED        1      2      4      1      0      5      0
  6P LOSS WILD-TYPE     33     28     29     21      8     17      1
D49V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                33
  CLUS_2               2                28
  CLUS_3               4                29
  CLUS_4               1                21
  CLUS_5               0                 8
  CLUS_6               5                17
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6P LOSS MUTATED        1      2      2      0      1      3      4
  6P LOSS WILD-TYPE     42     25     10     24      7     20      9
D49V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                42
  CLUS_2               2                25
  CLUS_3               2                10
  CLUS_4               0                24
  CLUS_5               1                 7
  CLUS_6               3                20
  CLUS_7               4                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        2      7      4
  6P LOSS WILD-TYPE     49     50     38
D49V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               2                49
  CLUS_2               7                50
  CLUS_3               4                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        3      6      4
  6P LOSS WILD-TYPE     67     32     38
D49V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               3                67
  CLUS_2               6                32
  CLUS_3               4                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        3      5      5
  6P LOSS WILD-TYPE     66     31     40
D49V9, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               3                66
  CLUS_2               5                31
  CLUS_3               5                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P LOSS MUTATED        1      2      3      3      2      2
  6P LOSS WILD-TYPE     33     34     16     24     17     13
D49V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                33
  CLUS_2               2                34
  CLUS_3               3                16
  CLUS_4               3                24
  CLUS_5               2                17
  CLUS_6               2                13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(50) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        4      1      9      2
  6Q LOSS WILD-TYPE     44     33     45     12
D50V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               4                44
  CLUS_2               1                33
  CLUS_3               9                45
  CLUS_4               2                12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        2      1      7      6
  6Q LOSS WILD-TYPE     43     19     27     45
D50V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               2                43
  CLUS_2               1                19
  CLUS_3               7                27
  CLUS_4               6                45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED        2      0      1      6      4
  6Q LOSS WILD-TYPE     43      8      9     31     14
D50V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               2                43
  CLUS_2               0                 8
  CLUS_3               1                 9
  CLUS_4               6                31
  CLUS_5               4                14
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        2      3      8
  6Q LOSS WILD-TYPE     49     22     34
D50V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               2                49
  CLUS_2               3                22
  CLUS_3               8                34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q LOSS MUTATED        1      2      6      1      0      6      0
  6Q LOSS WILD-TYPE     33     28     27     21      8     16      1
D50V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                33
  CLUS_2               2                28
  CLUS_3               6                27
  CLUS_4               1                21
  CLUS_5               0                 8
  CLUS_6               6                16
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  6Q LOSS MUTATED        1      2      2      0      2      4      5
  6Q LOSS WILD-TYPE     42     25     10     24      6     19      8
D50V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                42
  CLUS_2               2                25
  CLUS_3               2                10
  CLUS_4               0                24
  CLUS_5               2                 6
  CLUS_6               4                19
  CLUS_7               5                 8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        2      9      5
  6Q LOSS WILD-TYPE     49     48     37
D50V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               2                49
  CLUS_2               9                48
  CLUS_3               5                37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        3      8      5
  6Q LOSS WILD-TYPE     67     30     37
D50V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               3                67
  CLUS_2               8                30
  CLUS_3               5                37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        3      7      6
  6Q LOSS WILD-TYPE     66     29     39
D50V9, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               3                66
  CLUS_2               7                29
  CLUS_3               6                39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q LOSS MUTATED        1      2      3      4      4      2
  6Q LOSS WILD-TYPE     33     34     16     23     15     13
D50V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                33
  CLUS_2               2                34
  CLUS_3               3                16
  CLUS_4               4                23
  CLUS_5               4                15
  CLUS_6               2                13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(51) Variable = 7Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        0      0      3      1
  7Q LOSS WILD-TYPE     48     34     51     13
D51V1, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                48
  CLUS_2               0                34
  CLUS_3               3                51
  CLUS_4               1                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        1      0      1      2
  7Q LOSS WILD-TYPE     44     20     33     49
D51V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                44
  CLUS_2               0                20
  CLUS_3               1                33
  CLUS_4               2                49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        0      0      0      2      1
  7Q LOSS WILD-TYPE     45      8     10     35     17
D51V3, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                45
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               2                35
  CLUS_5               1                17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        0      0      3
  7Q LOSS WILD-TYPE     51     25     39
D51V4, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                51
  CLUS_2               0                25
  CLUS_3               3                39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q LOSS MUTATED        0      1      1      1      0      1      0
  7Q LOSS WILD-TYPE     34     29     32     21      8     21      1
D51V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                34
  CLUS_2               1                29
  CLUS_3               1                32
  CLUS_4               1                21
  CLUS_5               0                 8
  CLUS_6               1                21
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  7Q LOSS MUTATED        0      1      1      0      0      1      1
  7Q LOSS WILD-TYPE     43     26     11     24      8     22     12
D51V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                43
  CLUS_2               1                26
  CLUS_3               1                11
  CLUS_4               0                24
  CLUS_5               0                 8
  CLUS_6               1                22
  CLUS_7               1                12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        0      2      2
  7Q LOSS WILD-TYPE     51     55     40
D51V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                51
  CLUS_2               2                55
  CLUS_3               2                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        1      1      2
  7Q LOSS WILD-TYPE     69     37     40
D51V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                69
  CLUS_2               1                37
  CLUS_3               2                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        1      1      2
  7Q LOSS WILD-TYPE     68     35     43
D51V9, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                68
  CLUS_2               1                35
  CLUS_3               2                43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q LOSS MUTATED        0      1      1      0      0      2
  7Q LOSS WILD-TYPE     34     35     18     27     19     13
D51V10, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                34
  CLUS_2               1                35
  CLUS_3               1                18
  CLUS_4               0                27
  CLUS_5               0                19
  CLUS_6               2                13
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(52) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        3      1      7      1
  8P LOSS WILD-TYPE     45     33     47     13
D52V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               3                45
  CLUS_2               1                33
  CLUS_3               7                47
  CLUS_4               1                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        1      0      5      6
  8P LOSS WILD-TYPE     44     20     29     45
D52V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                44
  CLUS_2               0                20
  CLUS_3               5                29
  CLUS_4               6                45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED        0      0      0      5      3
  8P LOSS WILD-TYPE     45      8     10     32     15
D52V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               0                45
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               5                32
  CLUS_5               3                15
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        0      4      4
  8P LOSS WILD-TYPE     51     21     38
D52V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               0                51
  CLUS_2               4                21
  CLUS_3               4                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P LOSS MUTATED        1      0      3      2      0      6      0
  8P LOSS WILD-TYPE     33     30     30     20      8     16      1
D52V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                33
  CLUS_2               0                30
  CLUS_3               3                30
  CLUS_4               2                20
  CLUS_5               0                 8
  CLUS_6               6                16
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8P LOSS MUTATED        1      0      1      3      1      3      3
  8P LOSS WILD-TYPE     42     27     11     21      7     20     10
D52V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                42
  CLUS_2               0                27
  CLUS_3               1                11
  CLUS_4               3                21
  CLUS_5               1                 7
  CLUS_6               3                20
  CLUS_7               3                10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        1      3      8
  8P LOSS WILD-TYPE     50     54     34
D52V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                50
  CLUS_2               3                54
  CLUS_3               8                34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        1      3      8
  8P LOSS WILD-TYPE     69     35     34
D52V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                69
  CLUS_2               3                35
  CLUS_3               8                34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        1      4      7
  8P LOSS WILD-TYPE     68     32     38
D52V9, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                68
  CLUS_2               4                32
  CLUS_3               7                38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P LOSS MUTATED        1      0      2      3      2      4
  8P LOSS WILD-TYPE     33     36     17     24     17     11
D52V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                33
  CLUS_2               0                36
  CLUS_3               2                17
  CLUS_4               3                24
  CLUS_5               2                17
  CLUS_6               4                11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(53) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        1      0      4      0
  8Q LOSS WILD-TYPE     47     34     50     14
D53V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                47
  CLUS_2               0                34
  CLUS_3               4                50
  CLUS_4               0                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        0      0      1      4
  8Q LOSS WILD-TYPE     45     20     33     47
D53V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                45
  CLUS_2               0                20
  CLUS_3               1                33
  CLUS_4               4                47
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        0      0      0      4      0
  8Q LOSS WILD-TYPE     45      8     10     33     18
D53V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                45
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4               4                33
  CLUS_5               0                18
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        0      3      1
  8Q LOSS WILD-TYPE     51     22     41
D53V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                51
  CLUS_2               3                22
  CLUS_3               1                41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q LOSS MUTATED        0      0      0      1      0      4      0
  8Q LOSS WILD-TYPE     34     30     33     21      8     18      1
D53V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                34
  CLUS_2               0                30
  CLUS_3               0                33
  CLUS_4               1                21
  CLUS_5               0                 8
  CLUS_6               4                18
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  8Q LOSS MUTATED        0      0      0      3      0      0      2
  8Q LOSS WILD-TYPE     43     27     12     21      8     23     11
D53V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                43
  CLUS_2               0                27
  CLUS_3               0                12
  CLUS_4               3                21
  CLUS_5               0                 8
  CLUS_6               0                23
  CLUS_7               2                11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        0      0      5
  8Q LOSS WILD-TYPE     51     57     37
D53V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                51
  CLUS_2               0                57
  CLUS_3               5                37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        0      0      5
  8Q LOSS WILD-TYPE     70     38     37
D53V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                70
  CLUS_2               0                38
  CLUS_3               5                37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        0      0      5
  8Q LOSS WILD-TYPE     69     36     40
D53V9, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                69
  CLUS_2               0                36
  CLUS_3               5                40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q LOSS MUTATED        0      0      0      2      0      3
  8Q LOSS WILD-TYPE     34     36     19     25     19     12
D53V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                34
  CLUS_2               0                36
  CLUS_3               0                19
  CLUS_4               2                25
  CLUS_5               0                19
  CLUS_6               3                12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(54) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       14     18     31      1
  9P LOSS WILD-TYPE     34     16     23     13
D54V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              14                34
  CLUS_2              18                16
  CLUS_3              31                23
  CLUS_4               1                13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       16      9     16     23
  9P LOSS WILD-TYPE     29     11     18     28
D54V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              16                29
  CLUS_2               9                11
  CLUS_3              16                18
  CLUS_4              23                28
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED       16      3      4     20      9
  9P LOSS WILD-TYPE     29      5      6     17      9
D54V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              16                29
  CLUS_2               3                 5
  CLUS_3               4                 6
  CLUS_4              20                17
  CLUS_5               9                 9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       18     13     21
  9P LOSS WILD-TYPE     33     12     21
D54V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              18                33
  CLUS_2              13                12
  CLUS_3              21                21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P LOSS MUTATED       12     14     14     11      1     11      1
  9P LOSS WILD-TYPE     22     16     19     11      7     11      0
D54V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              12                22
  CLUS_2              14                16
  CLUS_3              14                19
  CLUS_4              11                11
  CLUS_5               1                 7
  CLUS_6              11                11
  CLUS_7               1                 0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9P LOSS MUTATED       15     13      8     12      2     10      4
  9P LOSS WILD-TYPE     28     14      4     12      6     13      9
D54V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              15                28
  CLUS_2              13                14
  CLUS_3               8                 4
  CLUS_4              12                12
  CLUS_5               2                 6
  CLUS_6              10                13
  CLUS_7               4                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       20     26     18
  9P LOSS WILD-TYPE     31     31     24
D54V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              20                31
  CLUS_2              26                31
  CLUS_3              18                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       28     18     18
  9P LOSS WILD-TYPE     42     20     24
D54V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              28                42
  CLUS_2              18                20
  CLUS_3              18                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       28     15     21
  9P LOSS WILD-TYPE     41     21     24
D54V9, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              28                41
  CLUS_2              15                21
  CLUS_3              21                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P LOSS MUTATED       11     17      9     12      8      7
  9P LOSS WILD-TYPE     23     19     10     15     11      8
D54V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              11                23
  CLUS_2              17                19
  CLUS_3               9                10
  CLUS_4              12                15
  CLUS_5               8                11
  CLUS_6               7                 8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(55) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       10     15     33      0
  9Q LOSS WILD-TYPE     38     19     21     14
D55V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              10                38
  CLUS_2              15                19
  CLUS_3              33                21
  CLUS_4               0                14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       13      6     15     24
  9Q LOSS WILD-TYPE     32     14     19     27
D55V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              13                32
  CLUS_2               6                14
  CLUS_3              15                19
  CLUS_4              24                27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED       14      2      2     20      8
  9Q LOSS WILD-TYPE     31      6      8     17     10
D55V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              14                31
  CLUS_2               2                 6
  CLUS_3               2                 8
  CLUS_4              20                17
  CLUS_5               8                10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       15     11     20
  9Q LOSS WILD-TYPE     36     14     22
D55V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              15                36
  CLUS_2              11                14
  CLUS_3              20                22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q LOSS MUTATED       11     10     14     12      1      9      1
  9Q LOSS WILD-TYPE     23     20     19     10      7     13      0
D55V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              11                23
  CLUS_2              10                20
  CLUS_3              14                19
  CLUS_4              12                10
  CLUS_5               1                 7
  CLUS_6               9                13
  CLUS_7               1                 0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  9Q LOSS MUTATED       13     10      8     13      0     11      3
  9Q LOSS WILD-TYPE     30     17      4     11      8     12     10
D55V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              13                30
  CLUS_2              10                17
  CLUS_3               8                 4
  CLUS_4              13                11
  CLUS_5               0                 8
  CLUS_6              11                12
  CLUS_7               3                10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       18     22     18
  9Q LOSS WILD-TYPE     33     35     24
D55V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              18                33
  CLUS_2              22                35
  CLUS_3              18                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       23     17     18
  9Q LOSS WILD-TYPE     47     21     24
D55V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              23                47
  CLUS_2              17                21
  CLUS_3              18                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       23     14     21
  9Q LOSS WILD-TYPE     46     22     24
D55V9, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              23                46
  CLUS_2              14                22
  CLUS_3              21                24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q LOSS MUTATED       10     13     11     13      5      6
  9Q LOSS WILD-TYPE     24     23      8     14     14      9
D55V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              10                24
  CLUS_2              13                23
  CLUS_3              11                 8
  CLUS_4              13                14
  CLUS_5               5                14
  CLUS_6               6                 9
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(56) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       19     12     38      8
  10P LOSS WILD-TYPE     29     22     16      6
D56V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               19                 29
  CLUS_2               12                 22
  CLUS_3               38                 16
  CLUS_4                8                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       18     10     25     24
  10P LOSS WILD-TYPE     27     10      9     27
D56V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               18                 27
  CLUS_2               10                 10
  CLUS_3               25                  9
  CLUS_4               24                 27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED       16      3      4     24     14
  10P LOSS WILD-TYPE     29      5      6     13      4
D56V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               16                 29
  CLUS_2                3                  5
  CLUS_3                4                  6
  CLUS_4               24                 13
  CLUS_5               14                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       18     15     28
  10P LOSS WILD-TYPE     33     10     14
D56V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               18                 33
  CLUS_2               15                 10
  CLUS_3               28                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P LOSS MUTATED       13     12     25     11      4     12      0
  10P LOSS WILD-TYPE     21     18      8     11      4     10      1
D56V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               13                 21
  CLUS_2               12                 18
  CLUS_3               25                  8
  CLUS_4               11                 11
  CLUS_5                4                  4
  CLUS_6               12                 10
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10P LOSS MUTATED       16     11      9     13      6     18      4
  10P LOSS WILD-TYPE     27     16      3     11      2      5      9
D56V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               16                 27
  CLUS_2               11                 16
  CLUS_3                9                  3
  CLUS_4               13                 11
  CLUS_5                6                  2
  CLUS_6               18                  5
  CLUS_7                4                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       20     36     21
  10P LOSS WILD-TYPE     31     21     21
D56V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               20                 31
  CLUS_2               36                 21
  CLUS_3               21                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       27     29     21
  10P LOSS WILD-TYPE     43      9     21
D56V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               27                 43
  CLUS_2               29                  9
  CLUS_3               21                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       27     27     23
  10P LOSS WILD-TYPE     42      9     22
D56V9, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               27                 42
  CLUS_2               27                  9
  CLUS_3               23                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P LOSS MUTATED       11     16     15     11     14     10
  10P LOSS WILD-TYPE     23     20      4     16      5      5
D56V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               11                 23
  CLUS_2               16                 20
  CLUS_3               15                  4
  CLUS_4               11                 16
  CLUS_5               14                  5
  CLUS_6               10                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(57) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       17      9     37      8
  10Q LOSS WILD-TYPE     31     25     17      6
D57V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               17                 31
  CLUS_2                9                 25
  CLUS_3               37                 17
  CLUS_4                8                  6
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       16      7     24     24
  10Q LOSS WILD-TYPE     29     13     10     27
D57V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               16                 29
  CLUS_2                7                 13
  CLUS_3               24                 10
  CLUS_4               24                 27
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED       15      2      4     21     12
  10Q LOSS WILD-TYPE     30      6      6     16      6
D57V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               15                 30
  CLUS_2                2                  6
  CLUS_3                4                  6
  CLUS_4               21                 16
  CLUS_5               12                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       16     14     24
  10Q LOSS WILD-TYPE     35     11     18
D57V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               16                 35
  CLUS_2               14                 11
  CLUS_3               24                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q LOSS MUTATED       14      7     24     10      4     12      0
  10Q LOSS WILD-TYPE     20     23      9     12      4     10      1
D57V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               14                 20
  CLUS_2                7                 23
  CLUS_3               24                  9
  CLUS_4               10                 12
  CLUS_5                4                  4
  CLUS_6               12                 10
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  10Q LOSS MUTATED       16      7      9     12      5     18      4
  10Q LOSS WILD-TYPE     27     20      3     12      3      5      9
D57V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               16                 27
  CLUS_2                7                 20
  CLUS_3                9                  3
  CLUS_4               12                 12
  CLUS_5                5                  3
  CLUS_6               18                  5
  CLUS_7                4                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       18     33     20
  10Q LOSS WILD-TYPE     33     24     22
D57V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               18                 33
  CLUS_2               33                 24
  CLUS_3               20                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       23     28     20
  10Q LOSS WILD-TYPE     47     10     22
D57V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               23                 47
  CLUS_2               28                 10
  CLUS_3               20                 22
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       23     26     22
  10Q LOSS WILD-TYPE     46     10     23
D57V9, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               23                 46
  CLUS_2               26                 10
  CLUS_3               22                 23
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q LOSS MUTATED       10     13     15      9     13     11
  10Q LOSS WILD-TYPE     24     23      4     18      6      4
D57V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               10                 24
  CLUS_2               13                 23
  CLUS_3               15                  4
  CLUS_4                9                 18
  CLUS_5               13                  6
  CLUS_6               11                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(58) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       25     26     39      9
  11P LOSS WILD-TYPE     23      8     15      5
D58V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               25                 23
  CLUS_2               26                  8
  CLUS_3               39                 15
  CLUS_4                9                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED       33     17     22     27
  11P LOSS WILD-TYPE     12      3     12     24
D58V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               33                 12
  CLUS_2               17                  3
  CLUS_3               22                 12
  CLUS_4               27                 24
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED       32      7      3     22     12
  11P LOSS WILD-TYPE     13      1      7     15      6
D58V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               32                 13
  CLUS_2                7                  1
  CLUS_3                3                  7
  CLUS_4               22                 15
  CLUS_5               12                  6
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       37     13     26
  11P LOSS WILD-TYPE     14     12     16
D58V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               37                 14
  CLUS_2               13                 12
  CLUS_3               26                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P LOSS MUTATED       26     23     23     11      5     10      1
  11P LOSS WILD-TYPE      8      7     10     11      3     12      0
D58V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               26                  8
  CLUS_2               23                  7
  CLUS_3               23                 10
  CLUS_4               11                 11
  CLUS_5                5                  3
  CLUS_6               10                 12
  CLUS_7                1                  0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11P LOSS MUTATED       32     22      9     12      4     18      2
  11P LOSS WILD-TYPE     11      5      3     12      4      5     11
D58V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               32                 11
  CLUS_2               22                  5
  CLUS_3                9                  3
  CLUS_4               12                 12
  CLUS_5                4                  4
  CLUS_6               18                  5
  CLUS_7                2                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       37     45     17
  11P LOSS WILD-TYPE     14     12     25
D58V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               37                 14
  CLUS_2               45                 12
  CLUS_3               17                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       54     28     17
  11P LOSS WILD-TYPE     16     10     25
D58V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               54                 16
  CLUS_2               28                 10
  CLUS_3               17                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       53     25     21
  11P LOSS WILD-TYPE     16     11     24
D58V9, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               53                 16
  CLUS_2               25                 11
  CLUS_3               21                 24
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P LOSS MUTATED       25     29     15     10     12      8
  11P LOSS WILD-TYPE      9      7      4     17      7      7
D58V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               25                  9
  CLUS_2               29                  7
  CLUS_3               15                  4
  CLUS_4               10                 17
  CLUS_5               12                  7
  CLUS_6                8                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(59) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       30     32     41     13
  11Q LOSS WILD-TYPE     18      2     13      1
D59V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               30                 18
  CLUS_2               32                  2
  CLUS_3               41                 13
  CLUS_4               13                  1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       38     18     26     34
  11Q LOSS WILD-TYPE      7      2      8     17
D59V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               38                  7
  CLUS_2               18                  2
  CLUS_3               26                  8
  CLUS_4               34                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED       39      7      6     25     13
  11Q LOSS WILD-TYPE      6      1      4     12      5
D59V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               39                  6
  CLUS_2                7                  1
  CLUS_3                6                  4
  CLUS_4               25                 12
  CLUS_5               13                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       44     17     29
  11Q LOSS WILD-TYPE      7      8     13
D59V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               44                  7
  CLUS_2               17                  8
  CLUS_3               29                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q LOSS MUTATED       27     30     27     14      7     11      0
  11Q LOSS WILD-TYPE      7      0      6      8      1     11      1
D59V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               27                  7
  CLUS_2               30                  0
  CLUS_3               27                  6
  CLUS_4               14                  8
  CLUS_5                7                  1
  CLUS_6               11                 11
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  11Q LOSS MUTATED       35     27     11     15      7     18      3
  11Q LOSS WILD-TYPE      8      0      1      9      1      5     10
D59V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               35                  8
  CLUS_2               27                  0
  CLUS_3               11                  1
  CLUS_4               15                  9
  CLUS_5                7                  1
  CLUS_6               18                  5
  CLUS_7                3                 10
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       43     51     22
  11Q LOSS WILD-TYPE      8      6     20
D59V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               43                  8
  CLUS_2               51                  6
  CLUS_3               22                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       62     32     22
  11Q LOSS WILD-TYPE      8      6     20
D59V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               62                  8
  CLUS_2               32                  6
  CLUS_3               22                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       61     29     26
  11Q LOSS WILD-TYPE      8      7     19
D59V9, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               61                  8
  CLUS_2               29                  7
  CLUS_3               26                 19
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q LOSS MUTATED       26     36     16     12     15     11
  11Q LOSS WILD-TYPE      8      0      3     15      4      4
D59V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               26                  8
  CLUS_2               36                  0
  CLUS_3               16                  3
  CLUS_4               12                 15
  CLUS_5               15                  4
  CLUS_6               11                  4
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(60) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       33     32     39      9
  13Q LOSS WILD-TYPE     15      2     15      5
D60V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               33                 15
  CLUS_2               32                  2
  CLUS_3               39                 15
  CLUS_4                9                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       35     18     26     34
  13Q LOSS WILD-TYPE     10      2      8     17
D60V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               35                 10
  CLUS_2               18                  2
  CLUS_3               26                  8
  CLUS_4               34                 17
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED       37      7      4     27     13
  13Q LOSS WILD-TYPE      8      1      6     10      5
D60V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               37                  8
  CLUS_2                7                  1
  CLUS_3                4                  6
  CLUS_4               27                 10
  CLUS_5               13                  5
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       42     14     32
  13Q LOSS WILD-TYPE      9     11     10
D60V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               42                  9
  CLUS_2               14                 11
  CLUS_3               32                 10
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q LOSS MUTATED       24     30     26     16      4     12      1
  13Q LOSS WILD-TYPE     10      0      7      6      4     10      0
D60V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               24                 10
  CLUS_2               30                  0
  CLUS_3               26                  7
  CLUS_4               16                  6
  CLUS_5                4                  4
  CLUS_6               12                 10
  CLUS_7                1                  0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  13Q LOSS MUTATED       31     27     11     14      6     17      7
  13Q LOSS WILD-TYPE     12      0      1     10      2      6      6
D60V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               31                 12
  CLUS_2               27                  0
  CLUS_3               11                  1
  CLUS_4               14                 10
  CLUS_5                6                  2
  CLUS_6               17                  6
  CLUS_7                7                  6
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       42     46     25
  13Q LOSS WILD-TYPE      9     11     17
D60V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               42                  9
  CLUS_2               46                 11
  CLUS_3               25                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       58     30     25
  13Q LOSS WILD-TYPE     12      8     17
D60V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               58                 12
  CLUS_2               30                  8
  CLUS_3               25                 17
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       57     27     29
  13Q LOSS WILD-TYPE     12      9     16
D60V9, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               57                 12
  CLUS_2               27                  9
  CLUS_3               29                 16
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q LOSS MUTATED       23     35     14     14     15     12
  13Q LOSS WILD-TYPE     11      1      5     13      4      3
D60V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               23                 11
  CLUS_2               35                  1
  CLUS_3               14                  5
  CLUS_4               14                 13
  CLUS_5               15                  4
  CLUS_6               12                  3
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(61) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        5      3     12      0
  14Q LOSS WILD-TYPE     43     31     42     14
D61V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                5                 43
  CLUS_2                3                 31
  CLUS_3               12                 42
  CLUS_4                0                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        3      1     10      6
  14Q LOSS WILD-TYPE     42     19     24     45
D61V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                3                 42
  CLUS_2                1                 19
  CLUS_3               10                 24
  CLUS_4                6                 45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        3      1      1      4      7
  14Q LOSS WILD-TYPE     42      7      9     33     11
D61V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                3                 42
  CLUS_2                1                  7
  CLUS_3                1                  9
  CLUS_4                4                 33
  CLUS_5                7                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        3      5      8
  14Q LOSS WILD-TYPE     48     20     34
D61V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                5                 20
  CLUS_3                8                 34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q LOSS MUTATED        0      3     10      2      0      5      0
  14Q LOSS WILD-TYPE     34     27     23     20      8     17      1
D61V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                3                 27
  CLUS_3               10                 23
  CLUS_4                2                 20
  CLUS_5                0                  8
  CLUS_6                5                 17
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  14Q LOSS MUTATED        0      3      0      5      0     10      2
  14Q LOSS WILD-TYPE     43     24     12     19      8     13     11
D61V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                0                 43
  CLUS_2                3                 24
  CLUS_3                0                 12
  CLUS_4                5                 19
  CLUS_5                0                  8
  CLUS_6               10                 13
  CLUS_7                2                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        2     11      7
  14Q LOSS WILD-TYPE     49     46     35
D61V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                2                 49
  CLUS_2               11                 46
  CLUS_3                7                 35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        3     10      7
  14Q LOSS WILD-TYPE     67     28     35
D61V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                3                 67
  CLUS_2               10                 28
  CLUS_3                7                 35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        3     10      7
  14Q LOSS WILD-TYPE     66     26     38
D61V9, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                3                 66
  CLUS_2               10                 26
  CLUS_3                7                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q LOSS MUTATED        0      3      6      2      4      5
  14Q LOSS WILD-TYPE     34     33     13     25     15     10
D61V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                3                 33
  CLUS_3                6                 13
  CLUS_4                2                 25
  CLUS_5                4                 15
  CLUS_6                5                 10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(62) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       10      1     14      4
  15Q LOSS WILD-TYPE     38     33     40     10
D62V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               10                 38
  CLUS_2                1                 33
  CLUS_3               14                 40
  CLUS_4                4                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        3      0     12     14
  15Q LOSS WILD-TYPE     42     20     22     37
D62V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                3                 42
  CLUS_2                0                 20
  CLUS_3               12                 22
  CLUS_4               14                 37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED        0      0      4     14      7
  15Q LOSS WILD-TYPE     45      8      6     23     11
D62V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                0                 45
  CLUS_2                0                  8
  CLUS_3                4                  6
  CLUS_4               14                 23
  CLUS_5                7                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        0     10     15
  15Q LOSS WILD-TYPE     51     15     27
D62V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                0                 51
  CLUS_2               10                 15
  CLUS_3               15                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q LOSS MUTATED        0      1      9      9      2      8      0
  15Q LOSS WILD-TYPE     34     29     24     13      6     14      1
D62V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                1                 29
  CLUS_3                9                 24
  CLUS_4                9                 13
  CLUS_5                2                  6
  CLUS_6                8                 14
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  15Q LOSS MUTATED        0      1      3      7      4      8      6
  15Q LOSS WILD-TYPE     43     26      9     17      4     15      7
D62V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                0                 43
  CLUS_2                1                 26
  CLUS_3                3                  9
  CLUS_4                7                 17
  CLUS_5                4                  4
  CLUS_6                8                 15
  CLUS_7                6                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        0     14     15
  15Q LOSS WILD-TYPE     51     43     27
D62V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                0                 51
  CLUS_2               14                 43
  CLUS_3               15                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        1     13     15
  15Q LOSS WILD-TYPE     69     25     27
D62V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                1                 69
  CLUS_2               13                 25
  CLUS_3               15                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        1     12     16
  15Q LOSS WILD-TYPE     68     24     29
D62V9, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                1                 68
  CLUS_2               12                 24
  CLUS_3               16                 29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q LOSS MUTATED        0      1      4      8      9      7
  15Q LOSS WILD-TYPE     34     35     15     19     10      8
D62V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                1                 35
  CLUS_3                4                 15
  CLUS_4                8                 19
  CLUS_5                9                 10
  CLUS_6                7                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(63) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       11     13     13      7
  16P LOSS WILD-TYPE     37     21     41      7
D63V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               11                 37
  CLUS_2               13                 21
  CLUS_3               13                 41
  CLUS_4                7                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED       12      8     16      8
  16P LOSS WILD-TYPE     33     12     18     43
D63V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               12                 33
  CLUS_2                8                 12
  CLUS_3               16                 18
  CLUS_4                8                 43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        9      4      2      9      7
  16P LOSS WILD-TYPE     36      4      8     28     11
D63V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                9                 36
  CLUS_2                4                  4
  CLUS_3                2                  8
  CLUS_4                9                 28
  CLUS_5                7                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       11      5     15
  16P LOSS WILD-TYPE     40     20     27
D63V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               11                 40
  CLUS_2                5                 20
  CLUS_3               15                 27
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P LOSS MUTATED        7     10     15      4      3      5      0
  16P LOSS WILD-TYPE     27     20     18     18      5     17      1
D63V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                7                 27
  CLUS_2               10                 20
  CLUS_3               15                 18
  CLUS_4                4                 18
  CLUS_5                3                  5
  CLUS_6                5                 17
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16P LOSS MUTATED       11      8      5      3      4      9      4
  16P LOSS WILD-TYPE     32     19      7     21      4     14      9
D63V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               11                 32
  CLUS_2                8                 19
  CLUS_3                5                  7
  CLUS_4                3                 21
  CLUS_5                4                  4
  CLUS_6                9                 14
  CLUS_7                4                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       11     26      7
  16P LOSS WILD-TYPE     40     31     35
D63V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               11                 40
  CLUS_2               26                 31
  CLUS_3                7                 35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       19     18      7
  16P LOSS WILD-TYPE     51     20     35
D63V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               19                 51
  CLUS_2               18                 20
  CLUS_3                7                 35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       18     16     10
  16P LOSS WILD-TYPE     51     20     35
D63V9, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               18                 51
  CLUS_2               16                 20
  CLUS_3               10                 35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P LOSS MUTATED        8     11      6      4     10      5
  16P LOSS WILD-TYPE     26     25     13     23      9     10
D63V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                8                 26
  CLUS_2               11                 25
  CLUS_3                6                 13
  CLUS_4                4                 23
  CLUS_5               10                  9
  CLUS_6                5                 10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(64) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       11     15     16      9
  16Q LOSS WILD-TYPE     37     19     38      5
D64V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               11                 37
  CLUS_2               15                 19
  CLUS_3               16                 38
  CLUS_4                9                  5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED       14      9     16     12
  16Q LOSS WILD-TYPE     31     11     18     39
D64V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               14                 31
  CLUS_2                9                 11
  CLUS_3               16                 18
  CLUS_4               12                 39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED       13      4      2     12      7
  16Q LOSS WILD-TYPE     32      4      8     25     11
D64V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               13                 32
  CLUS_2                4                  4
  CLUS_3                2                  8
  CLUS_4               12                 25
  CLUS_5                7                 11
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       15      7     16
  16Q LOSS WILD-TYPE     36     18     26
D64V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               15                 36
  CLUS_2                7                 18
  CLUS_3               16                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q LOSS MUTATED        9     11     15      6      3      7      0
  16Q LOSS WILD-TYPE     25     19     18     16      5     15      1
D64V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                9                 25
  CLUS_2               11                 19
  CLUS_3               15                 18
  CLUS_4                6                 16
  CLUS_5                3                  5
  CLUS_6                7                 15
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  16Q LOSS MUTATED       13      9      6      5      4     10      4
  16Q LOSS WILD-TYPE     30     18      6     19      4     13      9
D64V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               13                 30
  CLUS_2                9                 18
  CLUS_3                6                  6
  CLUS_4                5                 19
  CLUS_5                4                  4
  CLUS_6               10                 13
  CLUS_7                4                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       12     28     11
  16Q LOSS WILD-TYPE     39     29     31
D64V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               12                 39
  CLUS_2               28                 29
  CLUS_3               11                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       22     18     11
  16Q LOSS WILD-TYPE     48     20     31
D64V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               22                 48
  CLUS_2               18                 20
  CLUS_3               11                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       21     16     14
  16Q LOSS WILD-TYPE     48     20     31
D64V9, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               21                 48
  CLUS_2               16                 20
  CLUS_3               14                 31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q LOSS MUTATED       11     11      6      5     10      8
  16Q LOSS WILD-TYPE     23     25     13     22      9      7
D64V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               11                 23
  CLUS_2               11                 25
  CLUS_3                6                 13
  CLUS_4                5                 22
  CLUS_5               10                  9
  CLUS_6                8                  7
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(65) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED        4     20      9      4
  17P LOSS WILD-TYPE     44     14     45     10
D65V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                4                 44
  CLUS_2               20                 14
  CLUS_3                9                 45
  CLUS_4                4                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       13      7      4     13
  17P LOSS WILD-TYPE     32     13     30     38
D65V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               13                 32
  CLUS_2                7                 13
  CLUS_3                4                 30
  CLUS_4               13                 38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED       17      2      1      7      1
  17P LOSS WILD-TYPE     28      6      9     30     17
D65V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               17                 28
  CLUS_2                2                  6
  CLUS_3                1                  9
  CLUS_4                7                 30
  CLUS_5                1                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       19      1      8
  17P LOSS WILD-TYPE     32     24     34
D65V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               19                 32
  CLUS_2                1                 24
  CLUS_3                8                 34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P LOSS MUTATED        9     17      4      4      0      3      0
  17P LOSS WILD-TYPE     25     13     29     18      8     19      1
D65V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                9                 25
  CLUS_2               17                 13
  CLUS_3                4                 29
  CLUS_4                4                 18
  CLUS_5                0                  8
  CLUS_6                3                 19
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17P LOSS MUTATED       10     16      2      1      0      4      4
  17P LOSS WILD-TYPE     33     11     10     23      8     19      9
D65V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               10                 33
  CLUS_2               16                 11
  CLUS_3                2                 10
  CLUS_4                1                 23
  CLUS_5                0                  8
  CLUS_6                4                 19
  CLUS_7                4                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       18     12      7
  17P LOSS WILD-TYPE     33     45     35
D65V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               18                 33
  CLUS_2               12                 45
  CLUS_3                7                 35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       26      4      7
  17P LOSS WILD-TYPE     44     34     35
D65V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               26                 44
  CLUS_2                4                 34
  CLUS_3                7                 35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       26      3      8
  17P LOSS WILD-TYPE     43     33     37
D65V9, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               26                 43
  CLUS_2                3                 33
  CLUS_3                8                 37
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P LOSS MUTATED        6     20      1      3      2      5
  17P LOSS WILD-TYPE     28     16     18     24     17     10
D65V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                6                 28
  CLUS_2               20                 16
  CLUS_3                1                 18
  CLUS_4                3                 24
  CLUS_5                2                 17
  CLUS_6                5                 10
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(66) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        1      8      6      4
  17Q LOSS WILD-TYPE     47     26     48     10
D66V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                1                 47
  CLUS_2                8                 26
  CLUS_3                6                 48
  CLUS_4                4                 10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        7      3      3      6
  17Q LOSS WILD-TYPE     38     17     31     45
D66V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                7                 38
  CLUS_2                3                 17
  CLUS_3                3                 31
  CLUS_4                6                 45
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED        7      1      1      3      1
  17Q LOSS WILD-TYPE     38      7      9     34     17
D66V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                7                 38
  CLUS_2                1                  7
  CLUS_3                1                  9
  CLUS_4                3                 34
  CLUS_5                1                 17
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        8      1      4
  17Q LOSS WILD-TYPE     43     24     38
D66V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                8                 43
  CLUS_2                1                 24
  CLUS_3                4                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q LOSS MUTATED        4      9      3      2      0      1      0
  17Q LOSS WILD-TYPE     30     21     30     20      8     21      1
D66V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                4                 30
  CLUS_2                9                 21
  CLUS_3                3                 30
  CLUS_4                2                 20
  CLUS_5                0                  8
  CLUS_6                1                 21
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  17Q LOSS MUTATED        5      8      0      0      0      4      2
  17Q LOSS WILD-TYPE     38     19     12     24      8     19     11
D66V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                5                 38
  CLUS_2                8                 19
  CLUS_3                0                 12
  CLUS_4                0                 24
  CLUS_5                0                  8
  CLUS_6                4                 19
  CLUS_7                2                 11
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        9      7      3
  17Q LOSS WILD-TYPE     42     50     39
D66V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                9                 42
  CLUS_2                7                 50
  CLUS_3                3                 39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       13      3      3
  17Q LOSS WILD-TYPE     57     35     39
D66V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               13                 57
  CLUS_2                3                 35
  CLUS_3                3                 39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       13      3      3
  17Q LOSS WILD-TYPE     56     33     42
D66V9, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               13                 56
  CLUS_2                3                 33
  CLUS_3                3                 42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q LOSS MUTATED        3     10      1      2      2      1
  17Q LOSS WILD-TYPE     31     26     18     25     17     14
D66V10, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                3                 31
  CLUS_2               10                 26
  CLUS_3                1                 18
  CLUS_4                2                 25
  CLUS_5                2                 17
  CLUS_6                1                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(67) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       33     29     44     12
  18P LOSS WILD-TYPE     15      5     10      2
D67V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               33                 15
  CLUS_2               29                  5
  CLUS_3               44                 10
  CLUS_4               12                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       32     19     30     37
  18P LOSS WILD-TYPE     13      1      4     14
D67V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               32                 13
  CLUS_2               19                  1
  CLUS_3               30                  4
  CLUS_4               37                 14
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED       35      6      6     30     14
  18P LOSS WILD-TYPE     10      2      4      7      4
D67V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               35                 10
  CLUS_2                6                  2
  CLUS_3                6                  4
  CLUS_4               30                  7
  CLUS_5               14                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       39     19     33
  18P LOSS WILD-TYPE     12      6      9
D67V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               39                 12
  CLUS_2               19                  6
  CLUS_3               33                  9
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P LOSS MUTATED       25     25     29     15      7     16      1
  18P LOSS WILD-TYPE      9      5      4      7      1      6      0
D67V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               25                  9
  CLUS_2               25                  5
  CLUS_3               29                  4
  CLUS_4               15                  7
  CLUS_5                7                  1
  CLUS_6               16                  6
  CLUS_7                1                  0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18P LOSS MUTATED       33     22     11     15      7     21      9
  18P LOSS WILD-TYPE     10      5      1      9      1      2      4
D67V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               33                 10
  CLUS_2               22                  5
  CLUS_3               11                  1
  CLUS_4               15                  9
  CLUS_5                7                  1
  CLUS_6               21                  2
  CLUS_7                9                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       38     52     28
  18P LOSS WILD-TYPE     13      5     14
D67V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               38                 13
  CLUS_2               52                  5
  CLUS_3               28                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       55     35     28
  18P LOSS WILD-TYPE     15      3     14
D67V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               55                 15
  CLUS_2               35                  3
  CLUS_3               28                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       54     32     32
  18P LOSS WILD-TYPE     15      4     13
D67V9, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               54                 15
  CLUS_2               32                  4
  CLUS_3               32                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P LOSS MUTATED       24     31     16     16     18     13
  18P LOSS WILD-TYPE     10      5      3     11      1      2
D67V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               24                 10
  CLUS_2               31                  5
  CLUS_3               16                  3
  CLUS_4               16                 11
  CLUS_5               18                  1
  CLUS_6               13                  2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(68) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       33     32     45     12
  18Q LOSS WILD-TYPE     15      2      9      2
D68V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               33                 15
  CLUS_2               32                  2
  CLUS_3               45                  9
  CLUS_4               12                  2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       34     19     30     39
  18Q LOSS WILD-TYPE     11      1      4     12
D68V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               34                 11
  CLUS_2               19                  1
  CLUS_3               30                  4
  CLUS_4               39                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED       37      6      6     31     14
  18Q LOSS WILD-TYPE      8      2      4      6      4
D68V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               37                  8
  CLUS_2                6                  2
  CLUS_3                6                  4
  CLUS_4               31                  6
  CLUS_5               14                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       41     19     34
  18Q LOSS WILD-TYPE     10      6      8
D68V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               41                 10
  CLUS_2               19                  6
  CLUS_3               34                  8
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q LOSS MUTATED       25     28     29     16      7     16      1
  18Q LOSS WILD-TYPE      9      2      4      6      1      6      0
D68V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               25                  9
  CLUS_2               28                  2
  CLUS_3               29                  4
  CLUS_4               16                  6
  CLUS_5                7                  1
  CLUS_6               16                  6
  CLUS_7                1                  0
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  18Q LOSS MUTATED       33     25     11     16      7     21      9
  18Q LOSS WILD-TYPE     10      2      1      8      1      2      4
D68V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               33                 10
  CLUS_2               25                  2
  CLUS_3               11                  1
  CLUS_4               16                  8
  CLUS_5                7                  1
  CLUS_6               21                  2
  CLUS_7                9                  4
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       41     52     29
  18Q LOSS WILD-TYPE     10      5     13
D68V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               41                 10
  CLUS_2               52                  5
  CLUS_3               29                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       58     35     29
  18Q LOSS WILD-TYPE     12      3     13
D68V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               58                 12
  CLUS_2               35                  3
  CLUS_3               29                 13
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       57     32     33
  18Q LOSS WILD-TYPE     12      4     12
D68V9, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               57                 12
  CLUS_2               32                  4
  CLUS_3               33                 12
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q LOSS MUTATED       24     34     16     17     18     13
  18Q LOSS WILD-TYPE     10      2      3     10      1      2
D68V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               24                 10
  CLUS_2               34                  2
  CLUS_3               16                  3
  CLUS_4               17                 10
  CLUS_5               18                  1
  CLUS_6               13                  2
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(69) Variable = 19P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED       11      2     31      5
  19P LOSS WILD-TYPE     37     32     23      9
D69V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               11                 37
  CLUS_2                2                 32
  CLUS_3               31                 23
  CLUS_4                5                  9
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        4      1     23     21
  19P LOSS WILD-TYPE     41     19     11     30
D69V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                4                 41
  CLUS_2                1                 19
  CLUS_3               23                 11
  CLUS_4               21                 30
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        2      2      4     21     11
  19P LOSS WILD-TYPE     43      6      6     16      7
D69V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                2                 43
  CLUS_2                2                  6
  CLUS_3                4                  6
  CLUS_4               21                 16
  CLUS_5               11                  7
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        2     14     24
  19P LOSS WILD-TYPE     49     11     18
D69V4, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                2                 49
  CLUS_2               14                 11
  CLUS_3               24                 18
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P LOSS MUTATED        0      2     21     12      1     13      0
  19P LOSS WILD-TYPE     34     28     12     10      7      9      1
D69V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                2                 28
  CLUS_3               21                 12
  CLUS_4               12                 10
  CLUS_5                1                  7
  CLUS_6               13                  9
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19P LOSS MUTATED        0      2      9     12      5     15      6
  19P LOSS WILD-TYPE     43     25      3     12      3      8      7
D69V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                0                 43
  CLUS_2                2                 25
  CLUS_3                9                  3
  CLUS_4               12                 12
  CLUS_5                5                  3
  CLUS_6               15                  8
  CLUS_7                6                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        1     27     21
  19P LOSS WILD-TYPE     50     30     21
D69V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 50
  CLUS_2               27                 30
  CLUS_3               21                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        2     26     21
  19P LOSS WILD-TYPE     68     12     21
D69V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                2                 68
  CLUS_2               26                 12
  CLUS_3               21                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        2     23     24
  19P LOSS WILD-TYPE     67     13     21
D69V9, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                2                 67
  CLUS_2               23                 13
  CLUS_3               24                 21
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P LOSS MUTATED        0      2     12     12     13     10
  19P LOSS WILD-TYPE     34     34      7     15      6      5
D69V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                2                 34
  CLUS_3               12                  7
  CLUS_4               12                 15
  CLUS_5               13                  6
  CLUS_6               10                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(70) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED       11      1     35      6
  19Q LOSS WILD-TYPE     37     33     19      8
D70V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               11                 37
  CLUS_2                1                 33
  CLUS_3               35                 19
  CLUS_4                6                  8
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        4      0     27     22
  19Q LOSS WILD-TYPE     41     20      7     29
D70V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                4                 41
  CLUS_2                0                 20
  CLUS_3               27                  7
  CLUS_4               22                 29
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        1      2      4     22     14
  19Q LOSS WILD-TYPE     44      6      6     15      4
D70V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 44
  CLUS_2                2                  6
  CLUS_3                4                  6
  CLUS_4               22                 15
  CLUS_5               14                  4
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1     14     28
  19Q LOSS WILD-TYPE     50     11     14
D70V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 50
  CLUS_2               14                 11
  CLUS_3               28                 14
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q LOSS MUTATED        0      1     25     13      1     13      0
  19Q LOSS WILD-TYPE     34     29      8      9      7      9      1
D70V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                1                 29
  CLUS_3               25                  8
  CLUS_4               13                  9
  CLUS_5                1                  7
  CLUS_6               13                  9
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  19Q LOSS MUTATED        0      1      9     13      5     19      6
  19Q LOSS WILD-TYPE     43     26      3     11      3      4      7
D70V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                 43
  CLUS_2                1                 26
  CLUS_3                9                  3
  CLUS_4               13                 11
  CLUS_5                5                  3
  CLUS_6               19                  4
  CLUS_7                6                  7
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1     30     22
  19Q LOSS WILD-TYPE     50     27     20
D70V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 50
  CLUS_2               30                 27
  CLUS_3               22                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1     30     22
  19Q LOSS WILD-TYPE     69      8     20
D70V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 69
  CLUS_2               30                  8
  CLUS_3               22                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1     27     25
  19Q LOSS WILD-TYPE     68      9     20
D70V9, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 68
  CLUS_2               27                  9
  CLUS_3               25                 20
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q LOSS MUTATED        0      1     14     13     15     10
  19Q LOSS WILD-TYPE     34     35      5     14      4      5
D70V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                 34
  CLUS_2                1                 35
  CLUS_3               14                  5
  CLUS_4               13                 14
  CLUS_5               15                  4
  CLUS_6               10                  5
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(71) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        6      7     14      2
  20P LOSS WILD-TYPE     42     27     40     12
D71V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                6                 42
  CLUS_2                7                 27
  CLUS_3               14                 40
  CLUS_4                2                 12
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        7      3     10      9
  20P LOSS WILD-TYPE     38     17     24     42
D71V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                7                 38
  CLUS_2                3                 17
  CLUS_3               10                 24
  CLUS_4                9                 42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        7      1      3      6      6
  20P LOSS WILD-TYPE     38      7      7     31     12
D71V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                7                 38
  CLUS_2                1                  7
  CLUS_3                3                  7
  CLUS_4                6                 31
  CLUS_5                6                 12
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        8      7      8
  20P LOSS WILD-TYPE     43     18     34
D71V4, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                8                 43
  CLUS_2                7                 18
  CLUS_3                8                 34
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P LOSS MUTATED        3      7     10      6      1      2      0
  20P LOSS WILD-TYPE     31     23     23     16      7     20      1
D71V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                 31
  CLUS_2                7                 23
  CLUS_3               10                 23
  CLUS_4                6                 16
  CLUS_5                1                  7
  CLUS_6                2                 20
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20P LOSS MUTATED        4      7      3      5      2      7      1
  20P LOSS WILD-TYPE     39     20      9     19      6     16     12
D71V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 39
  CLUS_2                7                 20
  CLUS_3                3                  9
  CLUS_4                5                 19
  CLUS_5                2                  6
  CLUS_6                7                 16
  CLUS_7                1                 12
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        5     17      7
  20P LOSS WILD-TYPE     46     40     35
D71V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                5                 46
  CLUS_2               17                 40
  CLUS_3                7                 35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       11     11      7
  20P LOSS WILD-TYPE     59     27     35
D71V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               11                 59
  CLUS_2               11                 27
  CLUS_3                7                 35
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       11     11      7
  20P LOSS WILD-TYPE     58     25     38
D71V9, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               11                 58
  CLUS_2               11                 25
  CLUS_3                7                 38
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P LOSS MUTATED        2      9      9      5      3      1
  20P LOSS WILD-TYPE     32     27     10     22     16     14
D71V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                 32
  CLUS_2                9                 27
  CLUS_3                9                 10
  CLUS_4                5                 22
  CLUS_5                3                 16
  CLUS_6                1                 14
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(72) Variable = 20Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        4      4      6      1
  20Q LOSS WILD-TYPE     44     30     48     13
D72V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                 44
  CLUS_2                4                 30
  CLUS_3                6                 48
  CLUS_4                1                 13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        4      1      5      5
  20Q LOSS WILD-TYPE     41     19     29     46
D72V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                 41
  CLUS_2                1                 19
  CLUS_3                5                 29
  CLUS_4                5                 46
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q LOSS MUTATED        4      0      2      2      2
  20Q LOSS WILD-TYPE     41      8      8     35     16
D72V3, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                 41
  CLUS_2                0                  8
  CLUS_3                2                  8
  CLUS_4                2                 35
  CLUS_5                2                 16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        4      4      2
  20Q LOSS WILD-TYPE     47     21     40
D72V4, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                4                 47
  CLUS_2                4                 21
  CLUS_3                2                 40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q LOSS MUTATED        1      4      6      3      1      0      0
  20Q LOSS WILD-TYPE     33     26     27     19      7     22      1
D72V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                1                 33
  CLUS_2                4                 26
  CLUS_3                6                 27
  CLUS_4                3                 19
  CLUS_5                1                  7
  CLUS_6                0                 22
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  20Q LOSS MUTATED        2      4      1      3      2      3      0
  20Q LOSS WILD-TYPE     41     23     11     21      6     20     13
D72V6, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 41
  CLUS_2                4                 23
  CLUS_3                1                 11
  CLUS_4                3                 21
  CLUS_5                2                  6
  CLUS_6                3                 20
  CLUS_7                0                 13
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        3      9      3
  20Q LOSS WILD-TYPE     48     48     39
D72V7, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                3                 48
  CLUS_2                9                 48
  CLUS_3                3                 39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        6      6      3
  20Q LOSS WILD-TYPE     64     32     39
D72V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                6                 64
  CLUS_2                6                 32
  CLUS_3                3                 39
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        6      6      3
  20Q LOSS WILD-TYPE     63     30     42
D72V9, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                6                 63
  CLUS_2                6                 30
  CLUS_3                3                 42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q LOSS MUTATED        2      4      4      3      2      0
  20Q LOSS WILD-TYPE     32     32     15     24     17     15
D72V10, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                 32
  CLUS_2                4                 32
  CLUS_3                4                 15
  CLUS_4                3                 24
  CLUS_5                2                 17
  CLUS_6                0                 15
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(73) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        7      3     26      7
  22Q LOSS WILD-TYPE     41     31     28      7
D73V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                7                 41
  CLUS_2                3                 31
  CLUS_3               26                 28
  CLUS_4                7                  7
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        5      3     19     16
  22Q LOSS WILD-TYPE     40     17     15     35
D73V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                5                 40
  CLUS_2                3                 17
  CLUS_3               19                 15
  CLUS_4               16                 35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED        5      1      4     16      9
  22Q LOSS WILD-TYPE     40      7      6     21      9
D73V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                5                 40
  CLUS_2                1                  7
  CLUS_3                4                  6
  CLUS_4               16                 21
  CLUS_5                9                  9
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        5     14     16
  22Q LOSS WILD-TYPE     46     11     26
D73V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                5                 46
  CLUS_2               14                 11
  CLUS_3               16                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q LOSS MUTATED        3      2     19      8      2      9      0
  22Q LOSS WILD-TYPE     31     28     14     14      6     13      1
D73V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                3                 31
  CLUS_2                2                 28
  CLUS_3               19                 14
  CLUS_4                8                 14
  CLUS_5                2                  6
  CLUS_6                9                 13
  CLUS_7                0                  1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  22Q LOSS MUTATED        4      2      7     10      4     12      4
  22Q LOSS WILD-TYPE     39     25      5     14      4     11      9
D73V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                4                 39
  CLUS_2                2                 25
  CLUS_3                7                  5
  CLUS_4               10                 14
  CLUS_5                4                  4
  CLUS_6               12                 11
  CLUS_7                4                  9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        4     22     17
  22Q LOSS WILD-TYPE     47     35     25
D73V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                4                 47
  CLUS_2               22                 35
  CLUS_3               17                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        6     20     17
  22Q LOSS WILD-TYPE     64     18     25
D73V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                6                 64
  CLUS_2               20                 18
  CLUS_3               17                 25
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        6     18     19
  22Q LOSS WILD-TYPE     63     18     26
D73V9, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                6                 63
  CLUS_2               18                 18
  CLUS_3               19                 26
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q LOSS MUTATED        3      3     13     10      7      7
  22Q LOSS WILD-TYPE     31     33      6     17     12      8
D73V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                3                 31
  CLUS_2                3                 33
  CLUS_3               13                  6
  CLUS_4               10                 17
  CLUS_5                7                 12
  CLUS_6                7                  8
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(74) Variable = XP LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED        2      7     16      4
  XP LOSS WILD-TYPE     46     27     38     10
D74V1, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               2                46
  CLUS_2               7                27
  CLUS_3              16                38
  CLUS_4               4                10
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XP LOSS MUTATED        3      6      4     16
  XP LOSS WILD-TYPE     42     14     30     35
D74V2, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               3                42
  CLUS_2               6                14
  CLUS_3               4                30
  CLUS_4              16                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XP LOSS MUTATED       10      1      2     10      2
  XP LOSS WILD-TYPE     35      7      8     27     16
D74V3, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              10                35
  CLUS_2               1                 7
  CLUS_3               2                 8
  CLUS_4              10                27
  CLUS_5               2                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED       10      5     10
  XP LOSS WILD-TYPE     41     20     32
D74V4, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              10                41
  CLUS_2               5                20
  CLUS_3              10                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP LOSS MUTATED        4      7      5     10      0      3      0
  XP LOSS WILD-TYPE     30     23     28     12      8     19      1
D74V5, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               4                30
  CLUS_2               7                23
  CLUS_3               5                28
  CLUS_4              10                12
  CLUS_5               0                 8
  CLUS_6               3                19
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XP LOSS MUTATED        4      7      3      7      0      4      4
  XP LOSS WILD-TYPE     39     20      9     17      8     19      9
D74V6, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               4                39
  CLUS_2               7                20
  CLUS_3               3                 9
  CLUS_4               7                17
  CLUS_5               0                 8
  CLUS_6               4                19
  CLUS_7               4                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED        7      9     13
  XP LOSS WILD-TYPE     44     48     29
D74V7, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               7                44
  CLUS_2               9                48
  CLUS_3              13                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED       11      5     13
  XP LOSS WILD-TYPE     59     33     29
D74V8, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              11                59
  CLUS_2               5                33
  CLUS_3              13                29
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XP LOSS MUTATED       11      4     14
  XP LOSS WILD-TYPE     58     32     31
D74V9, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1              11                58
  CLUS_2               4                32
  CLUS_3              14                31
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XP LOSS MUTATED        2      9      3     10      1      4
  XP LOSS WILD-TYPE     32     27     16     17     18     11
D74V10, multiclass
        clus
vv       XP LOSS MUTATED XP LOSS WILD-TYPE
  CLUS_1               2                32
  CLUS_2               9                27
  CLUS_3               3                16
  CLUS_4              10                17
  CLUS_5               1                18
  CLUS_6               4                11
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(75) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        0      7     18      3
  XQ LOSS WILD-TYPE     48     27     36     11
D75V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               0                48
  CLUS_2               7                27
  CLUS_3              18                36
  CLUS_4               3                11
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        2      6      4     16
  XQ LOSS WILD-TYPE     43     14     30     35
D75V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                43
  CLUS_2               6                14
  CLUS_3               4                30
  CLUS_4              16                35
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED       10      0      0     12      2
  XQ LOSS WILD-TYPE     35      8     10     25     16
D75V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              10                35
  CLUS_2               0                 8
  CLUS_3               0                10
  CLUS_4              12                25
  CLUS_5               2                16
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       10      4     10
  XQ LOSS WILD-TYPE     41     21     32
D75V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              10                41
  CLUS_2               4                21
  CLUS_3              10                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ LOSS MUTATED        4      7      3     10      0      4      0
  XQ LOSS WILD-TYPE     30     23     30     12      8     18      1
D75V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               4                30
  CLUS_2               7                23
  CLUS_3               3                30
  CLUS_4              10                12
  CLUS_5               0                 8
  CLUS_6               4                18
  CLUS_7               0                 1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  XQ LOSS MUTATED        4      7      3      7      0      3      4
  XQ LOSS WILD-TYPE     39     20      9     17      8     20      9
D75V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               4                39
  CLUS_2               7                20
  CLUS_3               3                 9
  CLUS_4               7                17
  CLUS_5               0                 8
  CLUS_6               3                20
  CLUS_7               4                 9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        7      7     14
  XQ LOSS WILD-TYPE     44     50     28
D75V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               7                44
  CLUS_2               7                50
  CLUS_3              14                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       11      3     14
  XQ LOSS WILD-TYPE     59     35     28
D75V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              11                59
  CLUS_2               3                35
  CLUS_3              14                28
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       11      4     13
  XQ LOSS WILD-TYPE     58     32     32
D75V9, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              11                58
  CLUS_2               4                32
  CLUS_3              13                32
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ LOSS MUTATED        2      9      4     10      0      3
  XQ LOSS WILD-TYPE     32     27     15     17     19     12
D75V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               2                32
  CLUS_2               9                27
  CLUS_3               4                15
  CLUS_4              10                17
  CLUS_5               0                19
  CLUS_6               3                12
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
