[1] "ofn"        "-oTTHCA-TP"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/THCA-TP/22542946/THCA-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/THCA-TP/22815543/transformed.cor.cli.txt"

nPatients in clinical file=503, in cluster file=496, common to both=492
[1] "Reduce the number of clustering variables from 38 to 36."
[1]  36 492
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
           290            202 
  BRAF MUTATED BRAF WILD-TYPE 
           290            202 
[1] "NRAS MUTATION ANALYSIS"
[1] 3
  NRAS MUTATED NRAS WILD-TYPE 
            40            452 
  NRAS MUTATED NRAS WILD-TYPE 
            40            452 
[1] "HRAS MUTATION ANALYSIS"
[1] 3
  HRAS MUTATED HRAS WILD-TYPE 
            16            476 
  HRAS MUTATED HRAS WILD-TYPE 
            16            476 
[1] "NUDT11 MUTATION ANALYSIS"
[1] 3
  NUDT11 MUTATED NUDT11 WILD-TYPE 
              10              482 
  NUDT11 MUTATED NUDT11 WILD-TYPE 
              10              482 
[1] "RPTN MUTATION ANALYSIS"
[1] 3
  RPTN MUTATED RPTN WILD-TYPE 
            10            482 
  RPTN MUTATED RPTN WILD-TYPE 
            10            482 
[1] "EMG1 MUTATION ANALYSIS"
[1] 3
  EMG1 MUTATED EMG1 WILD-TYPE 
            11            481 
  EMG1 MUTATED EMG1 WILD-TYPE 
            11            481 
[1] "FAM47C MUTATION ANALYSIS"
[1] 3
  FAM47C MUTATED FAM47C WILD-TYPE 
              14              478 
  FAM47C MUTATED FAM47C WILD-TYPE 
              14              478 
[1] "EIF1AX MUTATION ANALYSIS"
[1] 3
  EIF1AX MUTATED EIF1AX WILD-TYPE 
               7              485 
  EIF1AX MUTATED EIF1AX WILD-TYPE 
               7              485 
[1] "DLX6 MUTATION ANALYSIS"
[1] 3
  DLX6 MUTATED DLX6 WILD-TYPE 
             7            485 
  DLX6 MUTATED DLX6 WILD-TYPE 
             7            485 
[1] "GPR44 MUTATION ANALYSIS"
[1] 3
  GPR44 MUTATED GPR44 WILD-TYPE 
              4             488 
  GPR44 MUTATED GPR44 WILD-TYPE 
              4             488 
[1] "TMEM184A MUTATION ANALYSIS"
[1] 3
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 5                487 
  TMEM184A MUTATED TMEM184A WILD-TYPE 
                 5                487 
[1] "NUP93 MUTATION ANALYSIS"
[1] 3
  NUP93 MUTATED NUP93 WILD-TYPE 
              4             488 
  NUP93 MUTATED NUP93 WILD-TYPE 
              4             488 
[1] "GAGE2A MUTATION ANALYSIS"
[1] 3
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               4              488 
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               4              488 
[1] "ABL1 MUTATION ANALYSIS"
[1] 3
  ABL1 MUTATED ABL1 WILD-TYPE 
             5            487 
  ABL1 MUTATED ABL1 WILD-TYPE 
             5            487 
[1] "LMTK2 MUTATION ANALYSIS"
[1] 3
  LMTK2 MUTATED LMTK2 WILD-TYPE 
              4             488 
  LMTK2 MUTATED LMTK2 WILD-TYPE 
              4             488 
[1] "SRPX MUTATION ANALYSIS"
[1] 3
  SRPX MUTATED SRPX WILD-TYPE 
             4            488 
  SRPX MUTATED SRPX WILD-TYPE 
             4            488 
[1] "PPM1D MUTATION ANALYSIS"
[1] 3
  PPM1D MUTATED PPM1D WILD-TYPE 
              6             486 
  PPM1D MUTATED PPM1D WILD-TYPE 
              6             486 
[1] "TG MUTATION ANALYSIS"
[1] 3
  TG MUTATED TG WILD-TYPE 
          20          472 
  TG MUTATED TG WILD-TYPE 
          20          472 
[1] "PTCD1 MUTATION ANALYSIS"
[1] 3
  PTCD1 MUTATED PTCD1 WILD-TYPE 
              3             489 
  PTCD1 MUTATED PTCD1 WILD-TYPE 
              3             489 
[1] "TSC22D1 MUTATION ANALYSIS"
[1] 3
  TSC22D1 MUTATED TSC22D1 WILD-TYPE 
                4               488 
  TSC22D1 MUTATED TSC22D1 WILD-TYPE 
                4               488 
[1] "AKT1 MUTATION ANALYSIS"
[1] 3
  AKT1 MUTATED AKT1 WILD-TYPE 
             5            487 
  AKT1 MUTATED AKT1 WILD-TYPE 
             5            487 
[1] "ZNF878 MUTATION ANALYSIS"
[1] 3
  ZNF878 MUTATED ZNF878 WILD-TYPE 
               3              489 
  ZNF878 MUTATED ZNF878 WILD-TYPE 
               3              489 
[1] "RBM10 MUTATION ANALYSIS"
[1] 3
  RBM10 MUTATED RBM10 WILD-TYPE 
              4             488 
  RBM10 MUTATED RBM10 WILD-TYPE 
              4             488 
[1] "EP400 MUTATION ANALYSIS"
[1] 3
  EP400 MUTATED EP400 WILD-TYPE 
              3             489 
  EP400 MUTATED EP400 WILD-TYPE 
              3             489 
[1] "ABCD1 MUTATION ANALYSIS"
[1] 3
  ABCD1 MUTATED ABCD1 WILD-TYPE 
              4             488 
  ABCD1 MUTATED ABCD1 WILD-TYPE 
              4             488 
[1] "MYH10 MUTATION ANALYSIS"
[1] 3
  MYH10 MUTATED MYH10 WILD-TYPE 
              4             488 
  MYH10 MUTATED MYH10 WILD-TYPE 
              4             488 
[1] "NLRP6 MUTATION ANALYSIS"
[1] 3
  NLRP6 MUTATED NLRP6 WILD-TYPE 
              4             488 
  NLRP6 MUTATED NLRP6 WILD-TYPE 
              4             488 
[1] "IGSF3 MUTATION ANALYSIS"
[1] 3
  IGSF3 MUTATED IGSF3 WILD-TYPE 
              4             488 
  IGSF3 MUTATED IGSF3 WILD-TYPE 
              4             488 
[1] "PRMT8 MUTATION ANALYSIS"
[1] 3
  PRMT8 MUTATED PRMT8 WILD-TYPE 
              3             489 
  PRMT8 MUTATED PRMT8 WILD-TYPE 
              3             489 
[1] "ARMCX3 MUTATION ANALYSIS"
[1] 3
  ARMCX3 MUTATED ARMCX3 WILD-TYPE 
               3              489 
  ARMCX3 MUTATED ARMCX3 WILD-TYPE 
               3              489 
[1] "RYR1 MUTATION ANALYSIS"
[1] 3
  RYR1 MUTATED RYR1 WILD-TYPE 
             7            485 
  RYR1 MUTATED RYR1 WILD-TYPE 
             7            485 
[1] "TNRC18 MUTATION ANALYSIS"
[1] 3
  TNRC18 MUTATED TNRC18 WILD-TYPE 
               4              488 
  TNRC18 MUTATED TNRC18 WILD-TYPE 
               4              488 
[1] "TMEM90B MUTATION ANALYSIS"
[1] 3
  TMEM90B MUTATED TMEM90B WILD-TYPE 
                3               489 
  TMEM90B MUTATED TMEM90B WILD-TYPE 
                3               489 
[1] "ZC3H11A MUTATION ANALYSIS"
[1] 3
  ZC3H11A MUTATED ZC3H11A WILD-TYPE 
                3               489 
  ZC3H11A MUTATED ZC3H11A WILD-TYPE 
                3               489 
[1] "RANBP9 MUTATION ANALYSIS"
[1] 3
  RANBP9 MUTATED RANBP9 WILD-TYPE 
               3              489 
  RANBP9 MUTATED RANBP9 WILD-TYPE 
               3              489 
[1] "DGCR8 MUTATION ANALYSIS"
[1] 3
  DGCR8 MUTATED DGCR8 WILD-TYPE 
              3             489 
  DGCR8 MUTATED DGCR8 WILD-TYPE 
              3             489 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 492 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=7,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 492 columns, 0 survival variables, and 10 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=7, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = BRAF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED       79     80    129
  BRAF WILD-TYPE     52     57     91
D1V1, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           79             52
  CLUS_2           80             57
  CLUS_3          129             91
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRAF MUTATED       41     14     49     40    146
  BRAF WILD-TYPE      5    130     35      0     32
D1V2, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           41              5
  CLUS_2           14            130
  CLUS_3           49             35
  CLUS_4           40              0
  CLUS_5          146             32
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED       20     43      9     46
  BRAF WILD-TYPE     43     18     31      5
D1V3, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           20             43
  CLUS_2           43             18
  CLUS_3            9             31
  CLUS_4           46              5
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  BRAF MUTATED        4     22     29      5     38     12      8
  BRAF WILD-TYPE     42      5      2     21     11     15      1
D1V4, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            4             42
  CLUS_2           22              5
  CLUS_3           29              2
  CLUS_4            5             21
  CLUS_5           38             11
  CLUS_6           12             15
  CLUS_7            8              1
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED      143     21     34     92
  BRAF WILD-TYPE     11    143     24     22
D1V5, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1          143             11
  CLUS_2           21            143
  CLUS_3           34             24
  CLUS_4           92             22
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  BRAF MUTATED      100      4     47     73     66
  BRAF WILD-TYPE      3    127     38     22     10
D1V6, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1          100              3
  CLUS_2            4            127
  CLUS_3           47             38
  CLUS_4           73             22
  CLUS_5           66             10
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED      123     13    100     53
  BRAF WILD-TYPE     40    130     19     13
D1V7, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1          123             40
  CLUS_2           13            130
  CLUS_3          100             19
  CLUS_4           53             13
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED      136      3    150
  BRAF WILD-TYPE     40    122     40
D1V8, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1          136             40
  CLUS_2            3            122
  CLUS_3          150             40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED       95     10     88     84
  BRAF WILD-TYPE     34    112     18     21
D1V9, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1           95             34
  CLUS_2           10            112
  CLUS_3           88             18
  CLUS_4           84             21
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED      120      3    154
  BRAF WILD-TYPE     40    115     30
D1V10, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1          120             40
  CLUS_2            3            115
  CLUS_3          154             30
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = NRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED       15      9     14
  NRAS WILD-TYPE    116    128    206
D2V1, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1           15            116
  CLUS_2            9            128
  CLUS_3           14            206
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRAS MUTATED        0     40      0      0      0
  NRAS WILD-TYPE     46    104     84     40    178
D2V2, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0             46
  CLUS_2           40            104
  CLUS_3            0             84
  CLUS_4            0             40
  CLUS_5            0            178
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        5      5      3      0
  NRAS WILD-TYPE     58     56     37     51
D2V3, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            5             58
  CLUS_2            5             56
  CLUS_3            3             37
  CLUS_4            0             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NRAS MUTATED        4      1      0      3      0      5      0
  NRAS WILD-TYPE     42     26     31     23     49     22      9
D2V4, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            4             42
  CLUS_2            1             26
  CLUS_3            0             31
  CLUS_4            3             23
  CLUS_5            0             49
  CLUS_6            5             22
  CLUS_7            0              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        0     40      0      0
  NRAS WILD-TYPE    154    124     58    114
D2V5, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            154
  CLUS_2           40            124
  CLUS_3            0             58
  CLUS_4            0            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NRAS MUTATED        0     40      0      0      0
  NRAS WILD-TYPE    103     91     85     95     76
D2V6, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            0            103
  CLUS_2           40             91
  CLUS_3            0             85
  CLUS_4            0             95
  CLUS_5            0             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        1     38      0      1
  NRAS WILD-TYPE    162    105    119     65
D2V7, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1            162
  CLUS_2           38            105
  CLUS_3            0            119
  CLUS_4            1             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        1     39      0
  NRAS WILD-TYPE    175     86    190
D2V8, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1            175
  CLUS_2           39             86
  CLUS_3            0            190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NRAS MUTATED        2     36      0      0
  NRAS WILD-TYPE    127     86    106    105
D2V9, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            2            127
  CLUS_2           36             86
  CLUS_3            0            106
  CLUS_4            0            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  NRAS MUTATED        1     37      0
  NRAS WILD-TYPE    159     81    184
D2V10, multiclass
        clus
vv       NRAS MUTATED NRAS WILD-TYPE
  CLUS_1            1            159
  CLUS_2           37             81
  CLUS_3            0            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = HRAS MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED       11      0      5
  HRAS WILD-TYPE    120    137    215
D3V1, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1           11            120
  CLUS_2            0            137
  CLUS_3            5            215
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HRAS MUTATED        0     16      0      0      0
  HRAS WILD-TYPE     46    128     84     40    178
D3V2, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0             46
  CLUS_2           16            128
  CLUS_3            0             84
  CLUS_4            0             40
  CLUS_5            0            178
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        8      1      1      0
  HRAS WILD-TYPE     55     60     39     51
D3V3, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            8             55
  CLUS_2            1             60
  CLUS_3            1             39
  CLUS_4            0             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  HRAS MUTATED        7      0      0      2      0      1      0
  HRAS WILD-TYPE     39     27     31     24     49     26      9
D3V4, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            7             39
  CLUS_2            0             27
  CLUS_3            0             31
  CLUS_4            2             24
  CLUS_5            0             49
  CLUS_6            1             26
  CLUS_7            0              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        0     16      0      0
  HRAS WILD-TYPE    154    148     58    114
D3V5, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0            154
  CLUS_2           16            148
  CLUS_3            0             58
  CLUS_4            0            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  HRAS MUTATED        0     16      0      0      0
  HRAS WILD-TYPE    103    115     85     95     76
D3V6, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0            103
  CLUS_2           16            115
  CLUS_3            0             85
  CLUS_4            0             95
  CLUS_5            0             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        0     16      0      0
  HRAS WILD-TYPE    163    127    119     66
D3V7, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0            163
  CLUS_2           16            127
  CLUS_3            0            119
  CLUS_4            0             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        0     16      0
  HRAS WILD-TYPE    176    109    190
D3V8, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0            176
  CLUS_2           16            109
  CLUS_3            0            190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  HRAS MUTATED        0     14      0      0
  HRAS WILD-TYPE    129    108    106    105
D3V9, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0            129
  CLUS_2           14            108
  CLUS_3            0            106
  CLUS_4            0            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  HRAS MUTATED        0     14      0
  HRAS WILD-TYPE    160    104    184
D3V10, multiclass
        clus
vv       HRAS MUTATED HRAS WILD-TYPE
  CLUS_1            0            160
  CLUS_2           14            104
  CLUS_3            0            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = NUDT11 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        2      4      4
  NUDT11 WILD-TYPE    129    133    216
D4V1, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2              129
  CLUS_2              4              133
  CLUS_3              4              216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUDT11 MUTATED        1      2      1      1      5
  NUDT11 WILD-TYPE     45    142     83     39    173
D4V2, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              2              142
  CLUS_3              1               83
  CLUS_4              1               39
  CLUS_5              5              173
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        1      2      1      1
  NUDT11 WILD-TYPE     62     59     39     50
D4V3, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              1               62
  CLUS_2              2               59
  CLUS_3              1               39
  CLUS_4              1               50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUDT11 MUTATED        1      0      1      0      1      2      0
  NUDT11 WILD-TYPE     45     27     30     26     48     25      9
D4V4, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              0               27
  CLUS_3              1               30
  CLUS_4              0               26
  CLUS_5              1               48
  CLUS_6              2               25
  CLUS_7              0                9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        4      2      0      4
  NUDT11 WILD-TYPE    150    162     58    110
D4V5, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              4              150
  CLUS_2              2              162
  CLUS_3              0               58
  CLUS_4              4              110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUDT11 MUTATED        2      2      2      2      2
  NUDT11 WILD-TYPE    101    129     83     93     74
D4V6, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              2              101
  CLUS_2              2              129
  CLUS_3              2               83
  CLUS_4              2               93
  CLUS_5              2               74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        4      2      2      2
  NUDT11 WILD-TYPE    159    141    117     64
D4V7, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              4              159
  CLUS_2              2              141
  CLUS_3              2              117
  CLUS_4              2               64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        4      2      4
  NUDT11 WILD-TYPE    172    123    186
D4V8, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              4              172
  CLUS_2              2              123
  CLUS_3              4              186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUDT11 MUTATED        3      2      2      2
  NUDT11 WILD-TYPE    126    120    104    103
D4V9, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              3              126
  CLUS_2              2              120
  CLUS_3              2              104
  CLUS_4              2              103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  NUDT11 MUTATED        4      2      3
  NUDT11 WILD-TYPE    156    116    181
D4V10, multiclass
        clus
vv       NUDT11 MUTATED NUDT11 WILD-TYPE
  CLUS_1              4              156
  CLUS_2              2              116
  CLUS_3              3              181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = RPTN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        3      3      4
  RPTN WILD-TYPE    128    134    216
D5V1, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            3            128
  CLUS_2            3            134
  CLUS_3            4            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPTN MUTATED        1      3      1      2      3
  RPTN WILD-TYPE     45    141     83     38    175
D5V2, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            1             45
  CLUS_2            3            141
  CLUS_3            1             83
  CLUS_4            2             38
  CLUS_5            3            175
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        2      0      0      1
  RPTN WILD-TYPE     61     61     40     50
D5V3, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            2             61
  CLUS_2            0             61
  CLUS_3            0             40
  CLUS_4            1             50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RPTN MUTATED        1      0      1      0      1      0      0
  RPTN WILD-TYPE     45     27     30     26     48     27      9
D5V4, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            1             45
  CLUS_2            0             27
  CLUS_3            1             30
  CLUS_4            0             26
  CLUS_5            1             48
  CLUS_6            0             27
  CLUS_7            0              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        3      2      1      4
  RPTN WILD-TYPE    151    162     57    110
D5V5, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            3            151
  CLUS_2            2            162
  CLUS_3            1             57
  CLUS_4            4            110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RPTN MUTATED        2      2      1      4      1
  RPTN WILD-TYPE    101    129     84     91     75
D5V6, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            2            101
  CLUS_2            2            129
  CLUS_3            1             84
  CLUS_4            4             91
  CLUS_5            1             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        2      1      4      3
  RPTN WILD-TYPE    161    142    115     63
D5V7, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            2            161
  CLUS_2            1            142
  CLUS_3            4            115
  CLUS_4            3             63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        4      2      4
  RPTN WILD-TYPE    172    123    186
D5V8, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            4            172
  CLUS_2            2            123
  CLUS_3            4            186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RPTN MUTATED        2      2      2      4
  RPTN WILD-TYPE    127    120    104    101
D5V9, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            2            127
  CLUS_2            2            120
  CLUS_3            2            104
  CLUS_4            4            101
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RPTN MUTATED        3      2      5
  RPTN WILD-TYPE    157    116    179
D5V10, multiclass
        clus
vv       RPTN MUTATED RPTN WILD-TYPE
  CLUS_1            3            157
  CLUS_2            2            116
  CLUS_3            5            179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = EMG1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        3      1      7
  EMG1 WILD-TYPE    128    136    213
D6V1, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            3            128
  CLUS_2            1            136
  CLUS_3            7            213
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        3      3      0      1      4
  EMG1 WILD-TYPE     43    141     84     39    174
D6V2, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            3             43
  CLUS_2            3            141
  CLUS_3            0             84
  CLUS_4            1             39
  CLUS_5            4            174
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        0      3      0      3
  EMG1 WILD-TYPE     63     58     40     48
D6V3, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            0             63
  CLUS_2            3             58
  CLUS_3            0             40
  CLUS_4            3             48
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EMG1 MUTATED        0      0      3      0      2      0      1
  EMG1 WILD-TYPE     46     27     28     26     47     27      8
D6V4, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             27
  CLUS_3            3             28
  CLUS_4            0             26
  CLUS_5            2             47
  CLUS_6            0             27
  CLUS_7            1              8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        6      3      0      1
  EMG1 WILD-TYPE    148    161     58    113
D6V5, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            6            148
  CLUS_2            3            161
  CLUS_3            0             58
  CLUS_4            1            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EMG1 MUTATED        5      3      0      1      1
  EMG1 WILD-TYPE     98    128     85     94     75
D6V6, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            5             98
  CLUS_2            3            128
  CLUS_3            0             85
  CLUS_4            1             94
  CLUS_5            1             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        2      4      1      4
  EMG1 WILD-TYPE    161    139    118     62
D6V7, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            2            161
  CLUS_2            4            139
  CLUS_3            1            118
  CLUS_4            4             62
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        4      3      4
  EMG1 WILD-TYPE    172    122    186
D6V8, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            4            172
  CLUS_2            3            122
  CLUS_3            4            186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EMG1 MUTATED        3      3      2      2
  EMG1 WILD-TYPE    126    119    104    103
D6V9, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            3            126
  CLUS_2            3            119
  CLUS_3            2            104
  CLUS_4            2            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EMG1 MUTATED        3      3      4
  EMG1 WILD-TYPE    157    115    180
D6V10, multiclass
        clus
vv       EMG1 MUTATED EMG1 WILD-TYPE
  CLUS_1            3            157
  CLUS_2            3            115
  CLUS_3            4            180
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(7) Variable = FAM47C MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        6      4      4
  FAM47C WILD-TYPE    125    133    216
D7V1, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              6              125
  CLUS_2              4              133
  CLUS_3              4              216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47C MUTATED        1      5      1      1      6
  FAM47C WILD-TYPE     45    139     83     39    172
D7V2, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              1               45
  CLUS_2              5              139
  CLUS_3              1               83
  CLUS_4              1               39
  CLUS_5              6              172
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        2      1      1      1
  FAM47C WILD-TYPE     61     60     39     50
D7V3, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              2               61
  CLUS_2              1               60
  CLUS_3              1               39
  CLUS_4              1               50
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  FAM47C MUTATED        1      1      0      1      1      0      1
  FAM47C WILD-TYPE     45     26     31     25     48     27      8
D7V4, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1               26
  CLUS_3              0               31
  CLUS_4              1               25
  CLUS_5              1               48
  CLUS_6              0               27
  CLUS_7              1                8
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        5      5      0      4
  FAM47C WILD-TYPE    149    159     58    110
D7V5, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              5              149
  CLUS_2              5              159
  CLUS_3              0               58
  CLUS_4              4              110
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  FAM47C MUTATED        4      5      0      4      1
  FAM47C WILD-TYPE     99    126     85     91     75
D7V6, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              4               99
  CLUS_2              5              126
  CLUS_3              0               85
  CLUS_4              4               91
  CLUS_5              1               75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        1      5      6      2
  FAM47C WILD-TYPE    162    138    113     64
D7V7, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              1              162
  CLUS_2              5              138
  CLUS_3              6              113
  CLUS_4              2               64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        2      5      7
  FAM47C WILD-TYPE    174    120    183
D7V8, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              2              174
  CLUS_2              5              120
  CLUS_3              7              183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  FAM47C MUTATED        2      4      2      5
  FAM47C WILD-TYPE    127    118    104    100
D7V9, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              2              127
  CLUS_2              4              118
  CLUS_3              2              104
  CLUS_4              5              100
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  FAM47C MUTATED        2      4      7
  FAM47C WILD-TYPE    158    114    177
D7V10, multiclass
        clus
vv       FAM47C MUTATED FAM47C WILD-TYPE
  CLUS_1              2              158
  CLUS_2              4              114
  CLUS_3              7              177
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = EIF1AX MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF1AX MUTATED        0      4      3
  EIF1AX WILD-TYPE    131    133    217
D8V1, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              0              131
  CLUS_2              4              133
  CLUS_3              3              217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF1AX MUTATED        0      5      1      0      1
  EIF1AX WILD-TYPE     46    139     83     40    177
D8V2, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              0               46
  CLUS_2              5              139
  CLUS_3              1               83
  CLUS_4              0               40
  CLUS_5              1              177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF1AX MUTATED        2      1      2      0
  EIF1AX WILD-TYPE     61     60     38     51
D8V3, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              2               61
  CLUS_2              1               60
  CLUS_3              2               38
  CLUS_4              0               51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EIF1AX MUTATED        3      0      0      1      0      1      0
  EIF1AX WILD-TYPE     43     27     31     25     49     26      9
D8V4, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              3               43
  CLUS_2              0               27
  CLUS_3              0               31
  CLUS_4              1               25
  CLUS_5              0               49
  CLUS_6              1               26
  CLUS_7              0                9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF1AX MUTATED        0      6      0      1
  EIF1AX WILD-TYPE    154    158     58    113
D8V5, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              0              154
  CLUS_2              6              158
  CLUS_3              0               58
  CLUS_4              1              113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EIF1AX MUTATED        0      6      1      0      0
  EIF1AX WILD-TYPE    103    125     84     95     76
D8V6, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              0              103
  CLUS_2              6              125
  CLUS_3              1               84
  CLUS_4              0               95
  CLUS_5              0               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF1AX MUTATED        1      5      1      0
  EIF1AX WILD-TYPE    162    138    118     66
D8V7, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              1              162
  CLUS_2              5              138
  CLUS_3              1              118
  CLUS_4              0               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF1AX MUTATED        2      4      1
  EIF1AX WILD-TYPE    174    121    189
D8V8, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              2              174
  CLUS_2              4              121
  CLUS_3              1              189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EIF1AX MUTATED        1      5      0      1
  EIF1AX WILD-TYPE    128    117    106    104
D8V9, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              1              128
  CLUS_2              5              117
  CLUS_3              0              106
  CLUS_4              1              104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  EIF1AX MUTATED        1      5      1
  EIF1AX WILD-TYPE    159    113    183
D8V10, multiclass
        clus
vv       EIF1AX MUTATED EIF1AX WILD-TYPE
  CLUS_1              1              159
  CLUS_2              5              113
  CLUS_3              1              183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DLX6 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLX6 MUTATED        2      1      4
  DLX6 WILD-TYPE    129    136    216
D9V1, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            2            129
  CLUS_2            1            136
  CLUS_3            4            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLX6 MUTATED        0      2      0      0      5
  DLX6 WILD-TYPE     46    142     84     40    173
D9V2, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            2            142
  CLUS_3            0             84
  CLUS_4            0             40
  CLUS_5            5            173
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLX6 MUTATED        0      1      1      0
  DLX6 WILD-TYPE     63     60     39     51
D9V3, multiclass
[1] "Remove cluster labels:" "DLX6 MUTATED"          
clus
  DLX6 MUTATED DLX6 WILD-TYPE 
             2            213 
    TCGA-BJ-A0YZ     TCGA-BJ-A0Z0     TCGA-BJ-A0Z2     TCGA-BJ-A0Z3 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-BJ-A0Z9     TCGA-BJ-A0ZA     TCGA-BJ-A0ZB     TCGA-BJ-A0ZC 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-BJ-A0ZE     TCGA-BJ-A0ZG     TCGA-BJ-A0ZJ     TCGA-BJ-A18Y 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-BJ-A18Z     TCGA-BJ-A191     TCGA-BJ-A192     TCGA-BJ-A28R 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-BJ-A28S     TCGA-BJ-A28T     TCGA-BJ-A28V     TCGA-BJ-A28Z 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-BJ-A290     TCGA-BJ-A2N7     TCGA-BJ-A2N9     TCGA-BJ-A2NA 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-BJ-A2P4     TCGA-BJ-A3EZ     TCGA-BJ-A3F0     TCGA-CE-A13K 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-CE-A27D     TCGA-CE-A3MD     TCGA-CE-A3ME     TCGA-DE-A0Y2 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DE-A2OL     TCGA-DE-A3KN     TCGA-DJ-A13M     TCGA-DJ-A13O 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A13R     TCGA-DJ-A13S     TCGA-DJ-A13V     TCGA-DJ-A13W 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A13X     TCGA-DJ-A1QD     TCGA-DJ-A1QE     TCGA-DJ-A1QF 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A1QG     TCGA-DJ-A1QI     TCGA-DJ-A1QL     TCGA-DJ-A1QM 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A1QN     TCGA-DJ-A1QO     TCGA-DJ-A2PN     TCGA-DJ-A2PO 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A2PP     TCGA-DJ-A2PQ     TCGA-DJ-A2PR     TCGA-DJ-A2PS 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A2PU     TCGA-DJ-A2PV     TCGA-DJ-A2PW     TCGA-DJ-A2PY 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A2PZ     TCGA-DJ-A2Q0     TCGA-DJ-A2Q1     TCGA-DJ-A2Q2 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A2Q4     TCGA-DJ-A2Q5     TCGA-DJ-A2Q6     TCGA-DJ-A2Q7 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A2Q8     TCGA-DJ-A2Q9     TCGA-DJ-A2QA     TCGA-DJ-A2QB 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A2QC     TCGA-DO-A1JZ     TCGA-DO-A1K0     TCGA-E3-A3DY 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-E3-A3DZ     TCGA-E3-A3E0     TCGA-E3-A3E1     TCGA-E3-A3E5 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-E8-A2EA     TCGA-E8-A2JQ     TCGA-EL-A3CL     TCGA-EL-A3CM 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3CN     TCGA-EL-A3CO     TCGA-EL-A3CP     TCGA-EL-A3CR 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3CS     TCGA-EL-A3CT     TCGA-EL-A3CU     TCGA-EL-A3CV 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3CW     TCGA-EL-A3CX     TCGA-EL-A3CY     TCGA-EL-A3CZ 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3D0     TCGA-EL-A3D1     TCGA-EL-A3D4     TCGA-EL-A3D5 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3D6     TCGA-EL-A3GO     TCGA-EL-A3GP     TCGA-EL-A3GQ 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3GR     TCGA-EL-A3GS     TCGA-EL-A3GU     TCGA-EL-A3GV 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3GW     TCGA-EL-A3GX     TCGA-EL-A3GY     TCGA-EL-A3GZ 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3H1     TCGA-EL-A3H2     TCGA-EL-A3H3     TCGA-EL-A3H4 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3H5     TCGA-EL-A3H7     TCGA-EL-A3H8     TCGA-EL-A3MW 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3MX     TCGA-EL-A3MY     TCGA-EL-A3MZ     TCGA-EL-A3N2 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3N3     TCGA-EM-A1CT     TCGA-EM-A1CU     TCGA-EM-A1CV 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A1CW     TCGA-EM-A1YA     TCGA-EM-A1YB     TCGA-EM-A1YC 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A1YD     TCGA-EM-A1YE     TCGA-EM-A22I     TCGA-EM-A22J 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A22L     TCGA-EM-A22M     TCGA-EM-A22O     TCGA-EM-A22Q 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A2CJ     TCGA-EM-A2CK     TCGA-EM-A2CL     TCGA-EM-A2CN 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A2CO     TCGA-EM-A2CP     TCGA-EM-A2CQ     TCGA-EM-A2CR 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A2CS     TCGA-EM-A2CU     TCGA-EM-A2OV     TCGA-EM-A2OY 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A2P1     TCGA-EM-A3AI     TCGA-EM-A3AJ     TCGA-EM-A3AL 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A3AN     TCGA-EM-A3AO     TCGA-EM-A3AP     TCGA-EM-A3FJ 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A3FL     TCGA-EM-A3FO     TCGA-EM-A3FP     TCGA-ET-A25G 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A25O     TCGA-ET-A2MY     TCGA-ET-A2MZ     TCGA-ET-A2N0 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A2N1     TCGA-ET-A2N4     TCGA-ET-A2N5     TCGA-ET-A39I 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A39J     TCGA-ET-A39L     TCGA-ET-A39M     TCGA-ET-A39N 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A39P     TCGA-ET-A39R     TCGA-ET-A39T     TCGA-ET-A3BN 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A3BP     TCGA-ET-A3BS     TCGA-ET-A3BT     TCGA-ET-A3BU 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A3BV     TCGA-ET-A3BW     TCGA-ET-A3BX     TCGA-ET-A3DO 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A3DP     TCGA-ET-A3DS     TCGA-ET-A3DT     TCGA-ET-A3DV 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A3DW     TCGA-FE-A22Z     TCGA-FE-A230     TCGA-FE-A231 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-FE-A232     TCGA-FE-A233     TCGA-FE-A234     TCGA-FE-A235 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-FE-A236     TCGA-FE-A237     TCGA-FE-A23A     TCGA-FY-A2QD 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-FY-A3BL     TCGA-FY-A3ON     TCGA-GE-A2C6     TCGA-H2-A2K9 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-IM-A3EB     TCGA-IM-A3ED     TCGA-J8-A3NZ     TCGA-J8-A3O0 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-J8-A3O1 
"DLX6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DLX6 MUTATED        0      0      1      1      0      0      0
  DLX6 WILD-TYPE     46     27     30     25     49     27      9
D9V4, multiclass
[1] "Remove cluster labels:" "DLX6 MUTATED"          
clus
  DLX6 MUTATED DLX6 WILD-TYPE 
             2            213 
    TCGA-BJ-A0YZ     TCGA-BJ-A0Z0     TCGA-BJ-A0Z2     TCGA-BJ-A0Z3 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-BJ-A0Z9     TCGA-BJ-A0ZA     TCGA-BJ-A0ZB     TCGA-BJ-A0ZC 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-BJ-A0ZE     TCGA-BJ-A0ZG     TCGA-BJ-A0ZJ     TCGA-BJ-A18Y 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-BJ-A18Z     TCGA-BJ-A191     TCGA-BJ-A192     TCGA-BJ-A28R 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-BJ-A28S     TCGA-BJ-A28T     TCGA-BJ-A28V     TCGA-BJ-A28Z 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-BJ-A290     TCGA-BJ-A2N7     TCGA-BJ-A2N9     TCGA-BJ-A2NA 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-BJ-A2P4     TCGA-BJ-A3EZ     TCGA-BJ-A3F0     TCGA-CE-A13K 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-CE-A27D     TCGA-CE-A3MD     TCGA-CE-A3ME     TCGA-DE-A0Y2 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DE-A2OL     TCGA-DE-A3KN     TCGA-DJ-A13M     TCGA-DJ-A13O 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A13R     TCGA-DJ-A13S     TCGA-DJ-A13V     TCGA-DJ-A13W 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A13X     TCGA-DJ-A1QD     TCGA-DJ-A1QE     TCGA-DJ-A1QF 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A1QG     TCGA-DJ-A1QI     TCGA-DJ-A1QL     TCGA-DJ-A1QM 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A1QN     TCGA-DJ-A1QO     TCGA-DJ-A2PN     TCGA-DJ-A2PO 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A2PP     TCGA-DJ-A2PQ     TCGA-DJ-A2PR     TCGA-DJ-A2PS 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A2PU     TCGA-DJ-A2PV     TCGA-DJ-A2PW     TCGA-DJ-A2PY 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A2PZ     TCGA-DJ-A2Q0     TCGA-DJ-A2Q1     TCGA-DJ-A2Q2 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A2Q4     TCGA-DJ-A2Q5     TCGA-DJ-A2Q6     TCGA-DJ-A2Q7 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A2Q8     TCGA-DJ-A2Q9     TCGA-DJ-A2QA     TCGA-DJ-A2QB 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-DJ-A2QC     TCGA-DO-A1JZ     TCGA-DO-A1K0     TCGA-E3-A3DY 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-E3-A3DZ     TCGA-E3-A3E0     TCGA-E3-A3E1     TCGA-E3-A3E5 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-E8-A2EA     TCGA-E8-A2JQ     TCGA-EL-A3CL     TCGA-EL-A3CM 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3CN     TCGA-EL-A3CO     TCGA-EL-A3CP     TCGA-EL-A3CR 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3CS     TCGA-EL-A3CT     TCGA-EL-A3CU     TCGA-EL-A3CV 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3CW     TCGA-EL-A3CX     TCGA-EL-A3CY     TCGA-EL-A3CZ 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3D0     TCGA-EL-A3D1     TCGA-EL-A3D4     TCGA-EL-A3D5 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3D6     TCGA-EL-A3GO     TCGA-EL-A3GP     TCGA-EL-A3GQ 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3GR     TCGA-EL-A3GS     TCGA-EL-A3GU     TCGA-EL-A3GV 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3GW     TCGA-EL-A3GX     TCGA-EL-A3GY     TCGA-EL-A3GZ 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3H1     TCGA-EL-A3H2     TCGA-EL-A3H3     TCGA-EL-A3H4 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3H5     TCGA-EL-A3H7     TCGA-EL-A3H8     TCGA-EL-A3MW 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3MX     TCGA-EL-A3MY     TCGA-EL-A3MZ     TCGA-EL-A3N2 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EL-A3N3     TCGA-EM-A1CT     TCGA-EM-A1CU     TCGA-EM-A1CV 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A1CW     TCGA-EM-A1YA     TCGA-EM-A1YB     TCGA-EM-A1YC 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A1YD     TCGA-EM-A1YE     TCGA-EM-A22I     TCGA-EM-A22J 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A22L     TCGA-EM-A22M     TCGA-EM-A22O     TCGA-EM-A22Q 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A2CJ     TCGA-EM-A2CK     TCGA-EM-A2CL     TCGA-EM-A2CN 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A2CO     TCGA-EM-A2CP     TCGA-EM-A2CQ     TCGA-EM-A2CR 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A2CS     TCGA-EM-A2CU     TCGA-EM-A2OV     TCGA-EM-A2OY 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A2P1     TCGA-EM-A3AI     TCGA-EM-A3AJ     TCGA-EM-A3AL 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A3AN     TCGA-EM-A3AO     TCGA-EM-A3AP     TCGA-EM-A3FJ 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-EM-A3FL     TCGA-EM-A3FO     TCGA-EM-A3FP     TCGA-ET-A25G 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A25O     TCGA-ET-A2MY     TCGA-ET-A2MZ     TCGA-ET-A2N0 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A2N1     TCGA-ET-A2N4     TCGA-ET-A2N5     TCGA-ET-A39I 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A39J     TCGA-ET-A39L     TCGA-ET-A39M     TCGA-ET-A39N 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A39P     TCGA-ET-A39R     TCGA-ET-A39T     TCGA-ET-A3BN 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A3BP     TCGA-ET-A3BS     TCGA-ET-A3BT     TCGA-ET-A3BU 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A3BV     TCGA-ET-A3BW     TCGA-ET-A3BX     TCGA-ET-A3DO 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A3DP     TCGA-ET-A3DS     TCGA-ET-A3DT     TCGA-ET-A3DV 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-ET-A3DW     TCGA-FE-A22Z     TCGA-FE-A230     TCGA-FE-A231 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-FE-A232     TCGA-FE-A233     TCGA-FE-A234     TCGA-FE-A235 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-FE-A236     TCGA-FE-A237     TCGA-FE-A23A     TCGA-FY-A2QD 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-FY-A3BL     TCGA-FY-A3ON     TCGA-GE-A2C6     TCGA-H2-A2K9 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-IM-A3EB     TCGA-IM-A3ED     TCGA-J8-A3NZ     TCGA-J8-A3O0 
"DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" "DLX6 WILD-TYPE" 
    TCGA-J8-A3O1 
"DLX6 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLX6 MUTATED        2      3      0      2
  DLX6 WILD-TYPE    152    161     58    112
D9V5, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            2            152
  CLUS_2            3            161
  CLUS_3            0             58
  CLUS_4            2            112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DLX6 MUTATED        1      2      1      1      2
  DLX6 WILD-TYPE    102    129     84     94     74
D9V6, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            1            102
  CLUS_2            2            129
  CLUS_3            1             84
  CLUS_4            1             94
  CLUS_5            2             74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLX6 MUTATED        0      2      3      2
  DLX6 WILD-TYPE    163    141    116     64
D9V7, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            0            163
  CLUS_2            2            141
  CLUS_3            3            116
  CLUS_4            2             64
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLX6 MUTATED        2      2      3
  DLX6 WILD-TYPE    174    123    187
D9V8, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            2            174
  CLUS_2            2            123
  CLUS_3            3            187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DLX6 MUTATED        0      2      2      3
  DLX6 WILD-TYPE    129    120    104    102
D9V9, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            0            129
  CLUS_2            2            120
  CLUS_3            2            104
  CLUS_4            3            102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  DLX6 MUTATED        0      2      5
  DLX6 WILD-TYPE    160    116    179
D9V10, multiclass
        clus
vv       DLX6 MUTATED DLX6 WILD-TYPE
  CLUS_1            0            160
  CLUS_2            2            116
  CLUS_3            5            179
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = GPR44 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR44 MUTATED        2      1      1
  GPR44 WILD-TYPE    129    136    219
D10V1, multiclass
        clus
vv       GPR44 MUTATED GPR44 WILD-TYPE
  CLUS_1             2             129
  CLUS_2             1             136
  CLUS_3             1             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR44 MUTATED        0      2      0      1      1
  GPR44 WILD-TYPE     46    142     84     39    177
D10V2, multiclass
        clus
vv       GPR44 MUTATED GPR44 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             2             142
  CLUS_3             0              84
  CLUS_4             1              39
  CLUS_5             1             177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR44 MUTATED        0      0      0      2
  GPR44 WILD-TYPE     63     61     40     49
D10V3, multiclass
[1] "Remove cluster labels:" "GPR44 MUTATED"         
clus
  GPR44 MUTATED GPR44 WILD-TYPE 
              2             213 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZG      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-BJ-A18Z      TCGA-BJ-A191      TCGA-BJ-A192      TCGA-BJ-A28R 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-BJ-A28S      TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-BJ-A290      TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-BJ-A2P4      TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-CE-A27D      TCGA-CE-A3MD      TCGA-DE-A0Y2      TCGA-DE-A2OL 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O      TCGA-DJ-A13R 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W      TCGA-DJ-A13X 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF      TCGA-DJ-A1QG 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM      TCGA-DJ-A1QN 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO      TCGA-DJ-A2PP 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS      TCGA-DJ-A2PU 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A2PV      TCGA-DJ-A2PW      TCGA-DJ-A2PY      TCGA-DJ-A2PZ 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A2Q0      TCGA-DJ-A2Q1      TCGA-DJ-A2Q2      TCGA-DJ-A2Q4 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A2Q5      TCGA-DJ-A2Q6      TCGA-DJ-A2Q7      TCGA-DJ-A2Q8 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A2Q9      TCGA-DJ-A2QA      TCGA-DJ-A2QB      TCGA-DJ-A2QC 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DO-A1JZ      TCGA-DO-A1K0      TCGA-E3-A3DY      TCGA-E3-A3DZ 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-E3-A3E0      TCGA-E3-A3E1      TCGA-E3-A3E3      TCGA-E3-A3E5 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-E8-A2EA      TCGA-E8-A2JQ      TCGA-EL-A3CL      TCGA-EL-A3CM 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3CN      TCGA-EL-A3CO      TCGA-EL-A3CP      TCGA-EL-A3CR 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3CS      TCGA-EL-A3CT      TCGA-EL-A3CU      TCGA-EL-A3CV 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3CW      TCGA-EL-A3CX      TCGA-EL-A3CY      TCGA-EL-A3CZ 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3D1      TCGA-EL-A3D4      TCGA-EL-A3D5      TCGA-EL-A3D6 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3GO      TCGA-EL-A3GP      TCGA-EL-A3GQ      TCGA-EL-A3GR 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3GS      TCGA-EL-A3GU      TCGA-EL-A3GV      TCGA-EL-A3GW 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3GX      TCGA-EL-A3GY      TCGA-EL-A3GZ      TCGA-EL-A3H1 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3H2      TCGA-EL-A3H3      TCGA-EL-A3H4      TCGA-EL-A3H5 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3H7      TCGA-EL-A3H8      TCGA-EL-A3MW      TCGA-EL-A3MX 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3MY      TCGA-EL-A3MZ      TCGA-EL-A3N2      TCGA-EL-A3N3 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A1CT      TCGA-EM-A1CU      TCGA-EM-A1CV      TCGA-EM-A1CW 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A1YA      TCGA-EM-A1YB      TCGA-EM-A1YC      TCGA-EM-A1YD 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A1YE      TCGA-EM-A22I      TCGA-EM-A22J      TCGA-EM-A22L 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A22M      TCGA-EM-A22O      TCGA-EM-A22Q      TCGA-EM-A2CJ 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A2CK      TCGA-EM-A2CL      TCGA-EM-A2CN      TCGA-EM-A2CO 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A2CP      TCGA-EM-A2CQ      TCGA-EM-A2CR      TCGA-EM-A2CS 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A2CU      TCGA-EM-A2OV      TCGA-EM-A2OY      TCGA-EM-A2P1 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A3AI      TCGA-EM-A3AJ      TCGA-EM-A3AL      TCGA-EM-A3AN 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A3AO      TCGA-EM-A3AP      TCGA-EM-A3FJ      TCGA-EM-A3FL 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A3FN      TCGA-EM-A3FO      TCGA-EM-A3FP      TCGA-ET-A25G 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A25O      TCGA-ET-A2MY      TCGA-ET-A2MZ      TCGA-ET-A2N0 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A2N1      TCGA-ET-A2N4      TCGA-ET-A2N5      TCGA-ET-A39I 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A39J      TCGA-ET-A39L      TCGA-ET-A39M      TCGA-ET-A39N 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A39P      TCGA-ET-A39R      TCGA-ET-A39T      TCGA-ET-A3BN 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A3BP      TCGA-ET-A3BS      TCGA-ET-A3BT      TCGA-ET-A3BU 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A3BV      TCGA-ET-A3BW      TCGA-ET-A3BX      TCGA-ET-A3DO 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A3DP      TCGA-ET-A3DS      TCGA-ET-A3DT      TCGA-ET-A3DV 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A3DW      TCGA-FE-A22Z      TCGA-FE-A230      TCGA-FE-A231 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-FE-A232      TCGA-FE-A233      TCGA-FE-A234      TCGA-FE-A235 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-FE-A236      TCGA-FE-A237      TCGA-FE-A23A      TCGA-FY-A2QD 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-FY-A3BL      TCGA-FY-A3ON      TCGA-GE-A2C6      TCGA-H2-A2K9 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-IM-A3EB      TCGA-IM-A3ED      TCGA-J8-A3NZ      TCGA-J8-A3O0 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-J8-A3O1 
"GPR44 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GPR44 MUTATED        0      0      1      1      0      0      0
  GPR44 WILD-TYPE     46     27     30     25     49     27      9
D10V4, multiclass
[1] "Remove cluster labels:" "GPR44 MUTATED"         
clus
  GPR44 MUTATED GPR44 WILD-TYPE 
              2             213 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZG      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-BJ-A18Z      TCGA-BJ-A191      TCGA-BJ-A192      TCGA-BJ-A28R 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-BJ-A28S      TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-BJ-A290      TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-BJ-A2P4      TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-CE-A27D      TCGA-CE-A3MD      TCGA-DE-A0Y2      TCGA-DE-A2OL 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O      TCGA-DJ-A13R 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W      TCGA-DJ-A13X 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF      TCGA-DJ-A1QG 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM      TCGA-DJ-A1QN 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO      TCGA-DJ-A2PP 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS      TCGA-DJ-A2PU 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A2PV      TCGA-DJ-A2PW      TCGA-DJ-A2PY      TCGA-DJ-A2PZ 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A2Q0      TCGA-DJ-A2Q1      TCGA-DJ-A2Q2      TCGA-DJ-A2Q4 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A2Q5      TCGA-DJ-A2Q6      TCGA-DJ-A2Q7      TCGA-DJ-A2Q8 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DJ-A2Q9      TCGA-DJ-A2QA      TCGA-DJ-A2QB      TCGA-DJ-A2QC 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-DO-A1JZ      TCGA-DO-A1K0      TCGA-E3-A3DY      TCGA-E3-A3DZ 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-E3-A3E0      TCGA-E3-A3E1      TCGA-E3-A3E3      TCGA-E3-A3E5 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-E8-A2EA      TCGA-E8-A2JQ      TCGA-EL-A3CL      TCGA-EL-A3CM 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3CN      TCGA-EL-A3CO      TCGA-EL-A3CP      TCGA-EL-A3CR 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3CS      TCGA-EL-A3CT      TCGA-EL-A3CU      TCGA-EL-A3CV 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3CW      TCGA-EL-A3CX      TCGA-EL-A3CY      TCGA-EL-A3CZ 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3D1      TCGA-EL-A3D4      TCGA-EL-A3D5      TCGA-EL-A3D6 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3GO      TCGA-EL-A3GP      TCGA-EL-A3GQ      TCGA-EL-A3GR 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3GS      TCGA-EL-A3GU      TCGA-EL-A3GV      TCGA-EL-A3GW 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3GX      TCGA-EL-A3GY      TCGA-EL-A3GZ      TCGA-EL-A3H1 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3H2      TCGA-EL-A3H3      TCGA-EL-A3H4      TCGA-EL-A3H5 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3H7      TCGA-EL-A3H8      TCGA-EL-A3MW      TCGA-EL-A3MX 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EL-A3MY      TCGA-EL-A3MZ      TCGA-EL-A3N2      TCGA-EL-A3N3 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A1CT      TCGA-EM-A1CU      TCGA-EM-A1CV      TCGA-EM-A1CW 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A1YA      TCGA-EM-A1YB      TCGA-EM-A1YC      TCGA-EM-A1YD 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A1YE      TCGA-EM-A22I      TCGA-EM-A22J      TCGA-EM-A22L 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A22M      TCGA-EM-A22O      TCGA-EM-A22Q      TCGA-EM-A2CJ 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A2CK      TCGA-EM-A2CL      TCGA-EM-A2CN      TCGA-EM-A2CO 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A2CP      TCGA-EM-A2CQ      TCGA-EM-A2CR      TCGA-EM-A2CS 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A2CU      TCGA-EM-A2OV      TCGA-EM-A2OY      TCGA-EM-A2P1 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A3AI      TCGA-EM-A3AJ      TCGA-EM-A3AL      TCGA-EM-A3AN 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A3AO      TCGA-EM-A3AP      TCGA-EM-A3FJ      TCGA-EM-A3FL 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-EM-A3FN      TCGA-EM-A3FO      TCGA-EM-A3FP      TCGA-ET-A25G 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A25O      TCGA-ET-A2MY      TCGA-ET-A2MZ      TCGA-ET-A2N0 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A2N1      TCGA-ET-A2N4      TCGA-ET-A2N5      TCGA-ET-A39I 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A39J      TCGA-ET-A39L      TCGA-ET-A39M      TCGA-ET-A39N 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A39P      TCGA-ET-A39R      TCGA-ET-A39T      TCGA-ET-A3BN 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A3BP      TCGA-ET-A3BS      TCGA-ET-A3BT      TCGA-ET-A3BU 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A3BV      TCGA-ET-A3BW      TCGA-ET-A3BX      TCGA-ET-A3DO 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A3DP      TCGA-ET-A3DS      TCGA-ET-A3DT      TCGA-ET-A3DV 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-ET-A3DW      TCGA-FE-A22Z      TCGA-FE-A230      TCGA-FE-A231 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-FE-A232      TCGA-FE-A233      TCGA-FE-A234      TCGA-FE-A235 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-FE-A236      TCGA-FE-A237      TCGA-FE-A23A      TCGA-FY-A2QD 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-FY-A3BL      TCGA-FY-A3ON      TCGA-GE-A2C6      TCGA-H2-A2K9 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-IM-A3EB      TCGA-IM-A3ED      TCGA-J8-A3NZ      TCGA-J8-A3O0 
"GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" "GPR44 WILD-TYPE" 
     TCGA-J8-A3O1 
"GPR44 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR44 MUTATED        1      1      1      1
  GPR44 WILD-TYPE    153    163     57    113
D10V5, multiclass
        clus
vv       GPR44 MUTATED GPR44 WILD-TYPE
  CLUS_1             1             153
  CLUS_2             1             163
  CLUS_3             1              57
  CLUS_4             1             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GPR44 MUTATED        0      0      1      1      2
  GPR44 WILD-TYPE    103    131     84     94     74
D10V6, multiclass
        clus
vv       GPR44 MUTATED GPR44 WILD-TYPE
  CLUS_1             0             103
  CLUS_2             0             131
  CLUS_3             1              84
  CLUS_4             1              94
  CLUS_5             2              74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR44 MUTATED        3      0      0      1
  GPR44 WILD-TYPE    160    143    119     65
D10V7, multiclass
        clus
vv       GPR44 MUTATED GPR44 WILD-TYPE
  CLUS_1             3             160
  CLUS_2             0             143
  CLUS_3             0             119
  CLUS_4             1              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR44 MUTATED        3      0      1
  GPR44 WILD-TYPE    173    125    189
D10V8, multiclass
        clus
vv       GPR44 MUTATED GPR44 WILD-TYPE
  CLUS_1             3             173
  CLUS_2             0             125
  CLUS_3             1             189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GPR44 MUTATED        3      0      1      0
  GPR44 WILD-TYPE    126    122    105    105
D10V9, multiclass
        clus
vv       GPR44 MUTATED GPR44 WILD-TYPE
  CLUS_1             3             126
  CLUS_2             0             122
  CLUS_3             1             105
  CLUS_4             0             105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  GPR44 MUTATED        3      0      1
  GPR44 WILD-TYPE    157    118    183
D10V10, multiclass
        clus
vv       GPR44 MUTATED GPR44 WILD-TYPE
  CLUS_1             3             157
  CLUS_2             0             118
  CLUS_3             1             183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = TMEM184A MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        2      0      3
  TMEM184A WILD-TYPE    129    137    217
D11V1, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                2                129
  CLUS_2                0                137
  CLUS_3                3                217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM184A MUTATED        0      2      0      0      3
  TMEM184A WILD-TYPE     46    142     84     40    175
D11V2, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                0                 46
  CLUS_2                2                142
  CLUS_3                0                 84
  CLUS_4                0                 40
  CLUS_5                3                175
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        0      0      0      0
  TMEM184A WILD-TYPE     63     61     40     51
D11V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM184A MUTATED        0      0      0      0      0      0      0
  TMEM184A WILD-TYPE     46     27     31     26     49     27      9
D11V4, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        2      2      0      1
  TMEM184A WILD-TYPE    152    162     58    113
D11V5, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                2                152
  CLUS_2                2                162
  CLUS_3                0                 58
  CLUS_4                1                113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM184A MUTATED        1      2      1      0      1
  TMEM184A WILD-TYPE    102    129     84     95     75
D11V6, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                1                102
  CLUS_2                2                129
  CLUS_3                1                 84
  CLUS_4                0                 95
  CLUS_5                1                 75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        2      2      1      0
  TMEM184A WILD-TYPE    161    141    118     66
D11V7, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                2                161
  CLUS_2                2                141
  CLUS_3                1                118
  CLUS_4                0                 66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        2      2      1
  TMEM184A WILD-TYPE    174    123    189
D11V8, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                2                174
  CLUS_2                2                123
  CLUS_3                1                189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM184A MUTATED        2      1      1      0
  TMEM184A WILD-TYPE    127    121    105    105
D11V9, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                2                127
  CLUS_2                1                121
  CLUS_3                1                105
  CLUS_4                0                105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  TMEM184A MUTATED        2      1      1
  TMEM184A WILD-TYPE    158    117    183
D11V10, multiclass
        clus
vv       TMEM184A MUTATED TMEM184A WILD-TYPE
  CLUS_1                2                158
  CLUS_2                1                117
  CLUS_3                1                183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = NUP93 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUP93 MUTATED        0      1      3
  NUP93 WILD-TYPE    131    136    217
D12V1, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             0             131
  CLUS_2             1             136
  CLUS_3             3             217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUP93 MUTATED        1      1      0      0      2
  NUP93 WILD-TYPE     45    143     84     40    176
D12V2, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             1             143
  CLUS_3             0              84
  CLUS_4             0              40
  CLUS_5             2             176
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP93 MUTATED        0      0      1      1
  NUP93 WILD-TYPE     63     61     39     50
D12V3, multiclass
[1] "Remove cluster labels:" "NUP93 MUTATED"         
clus
  NUP93 MUTATED NUP93 WILD-TYPE 
              2             213 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZG      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A18Z      TCGA-BJ-A192      TCGA-BJ-A28R      TCGA-BJ-A28S 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z      TCGA-BJ-A290 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA      TCGA-BJ-A2P4 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K      TCGA-CE-A27D 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-CE-A3MD      TCGA-CE-A3ME      TCGA-DE-A0Y2      TCGA-DE-A2OL 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O      TCGA-DJ-A13R 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W      TCGA-DJ-A13X 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF      TCGA-DJ-A1QG 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM      TCGA-DJ-A1QN 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO      TCGA-DJ-A2PP 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS      TCGA-DJ-A2PU 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2PV      TCGA-DJ-A2PW      TCGA-DJ-A2PY      TCGA-DJ-A2PZ 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2Q0      TCGA-DJ-A2Q1      TCGA-DJ-A2Q2      TCGA-DJ-A2Q5 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2Q6      TCGA-DJ-A2Q7      TCGA-DJ-A2Q8      TCGA-DJ-A2Q9 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2QA      TCGA-DJ-A2QB      TCGA-DJ-A2QC      TCGA-DO-A1JZ 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DO-A1K0      TCGA-E3-A3DY      TCGA-E3-A3DZ      TCGA-E3-A3E0 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-E3-A3E1      TCGA-E3-A3E3      TCGA-E3-A3E5      TCGA-E8-A2EA 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-E8-A2JQ      TCGA-EL-A3CL      TCGA-EL-A3CM      TCGA-EL-A3CN 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3CO      TCGA-EL-A3CP      TCGA-EL-A3CR      TCGA-EL-A3CS 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3CT      TCGA-EL-A3CU      TCGA-EL-A3CV      TCGA-EL-A3CW 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3CX      TCGA-EL-A3CY      TCGA-EL-A3CZ      TCGA-EL-A3D0 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3D1      TCGA-EL-A3D4      TCGA-EL-A3D5      TCGA-EL-A3D6 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3GO      TCGA-EL-A3GP      TCGA-EL-A3GQ      TCGA-EL-A3GR 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3GS      TCGA-EL-A3GU      TCGA-EL-A3GV      TCGA-EL-A3GW 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3GX      TCGA-EL-A3GY      TCGA-EL-A3GZ      TCGA-EL-A3H1 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3H2      TCGA-EL-A3H3      TCGA-EL-A3H4      TCGA-EL-A3H5 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3H7      TCGA-EL-A3H8      TCGA-EL-A3MW      TCGA-EL-A3MX 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3MY      TCGA-EL-A3MZ      TCGA-EL-A3N2      TCGA-EL-A3N3 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A1CT      TCGA-EM-A1CU      TCGA-EM-A1CV      TCGA-EM-A1CW 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A1YA      TCGA-EM-A1YB      TCGA-EM-A1YC      TCGA-EM-A1YD 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A1YE      TCGA-EM-A22I      TCGA-EM-A22J      TCGA-EM-A22L 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A22M      TCGA-EM-A22O      TCGA-EM-A22Q      TCGA-EM-A2CJ 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A2CK      TCGA-EM-A2CL      TCGA-EM-A2CN      TCGA-EM-A2CO 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A2CP      TCGA-EM-A2CQ      TCGA-EM-A2CR      TCGA-EM-A2CS 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A2CU      TCGA-EM-A2OV      TCGA-EM-A2OY      TCGA-EM-A2P1 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A3AI      TCGA-EM-A3AJ      TCGA-EM-A3AL      TCGA-EM-A3AN 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A3AO      TCGA-EM-A3AP      TCGA-EM-A3FJ      TCGA-EM-A3FL 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A3FN      TCGA-EM-A3FO      TCGA-EM-A3FP      TCGA-ET-A25G 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A25O      TCGA-ET-A2MY      TCGA-ET-A2MZ      TCGA-ET-A2N0 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A2N1      TCGA-ET-A2N4      TCGA-ET-A2N5      TCGA-ET-A39I 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A39J      TCGA-ET-A39L      TCGA-ET-A39M      TCGA-ET-A39N 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A39P      TCGA-ET-A39R      TCGA-ET-A39T      TCGA-ET-A3BN 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A3BP      TCGA-ET-A3BS      TCGA-ET-A3BT      TCGA-ET-A3BU 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A3BV      TCGA-ET-A3BW      TCGA-ET-A3BX      TCGA-ET-A3DO 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A3DP      TCGA-ET-A3DS      TCGA-ET-A3DT      TCGA-ET-A3DV 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A3DW      TCGA-FE-A22Z      TCGA-FE-A230      TCGA-FE-A231 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-FE-A232      TCGA-FE-A233      TCGA-FE-A234      TCGA-FE-A235 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-FE-A236      TCGA-FE-A237      TCGA-FE-A23A      TCGA-FY-A2QD 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-FY-A3BL      TCGA-FY-A3ON      TCGA-GE-A2C6      TCGA-H2-A2K9 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-IM-A3EB      TCGA-IM-A3ED      TCGA-J8-A3NZ      TCGA-J8-A3O0 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-J8-A3O1 
"NUP93 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NUP93 MUTATED        0      0      0      0      2      0      0
  NUP93 WILD-TYPE     46     27     31     26     47     27      9
D12V4, multiclass
[1] "Remove cluster labels:" "NUP93 MUTATED"         
clus
  NUP93 MUTATED NUP93 WILD-TYPE 
              2             213 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZG      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A18Z      TCGA-BJ-A192      TCGA-BJ-A28R      TCGA-BJ-A28S 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z      TCGA-BJ-A290 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA      TCGA-BJ-A2P4 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K      TCGA-CE-A27D 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-CE-A3MD      TCGA-CE-A3ME      TCGA-DE-A0Y2      TCGA-DE-A2OL 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O      TCGA-DJ-A13R 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W      TCGA-DJ-A13X 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF      TCGA-DJ-A1QG 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM      TCGA-DJ-A1QN 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO      TCGA-DJ-A2PP 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS      TCGA-DJ-A2PU 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2PV      TCGA-DJ-A2PW      TCGA-DJ-A2PY      TCGA-DJ-A2PZ 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2Q0      TCGA-DJ-A2Q1      TCGA-DJ-A2Q2      TCGA-DJ-A2Q5 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2Q6      TCGA-DJ-A2Q7      TCGA-DJ-A2Q8      TCGA-DJ-A2Q9 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DJ-A2QA      TCGA-DJ-A2QB      TCGA-DJ-A2QC      TCGA-DO-A1JZ 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-DO-A1K0      TCGA-E3-A3DY      TCGA-E3-A3DZ      TCGA-E3-A3E0 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-E3-A3E1      TCGA-E3-A3E3      TCGA-E3-A3E5      TCGA-E8-A2EA 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-E8-A2JQ      TCGA-EL-A3CL      TCGA-EL-A3CM      TCGA-EL-A3CN 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3CO      TCGA-EL-A3CP      TCGA-EL-A3CR      TCGA-EL-A3CS 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3CT      TCGA-EL-A3CU      TCGA-EL-A3CV      TCGA-EL-A3CW 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3CX      TCGA-EL-A3CY      TCGA-EL-A3CZ      TCGA-EL-A3D0 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3D1      TCGA-EL-A3D4      TCGA-EL-A3D5      TCGA-EL-A3D6 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3GO      TCGA-EL-A3GP      TCGA-EL-A3GQ      TCGA-EL-A3GR 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3GS      TCGA-EL-A3GU      TCGA-EL-A3GV      TCGA-EL-A3GW 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3GX      TCGA-EL-A3GY      TCGA-EL-A3GZ      TCGA-EL-A3H1 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3H2      TCGA-EL-A3H3      TCGA-EL-A3H4      TCGA-EL-A3H5 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3H7      TCGA-EL-A3H8      TCGA-EL-A3MW      TCGA-EL-A3MX 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EL-A3MY      TCGA-EL-A3MZ      TCGA-EL-A3N2      TCGA-EL-A3N3 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A1CT      TCGA-EM-A1CU      TCGA-EM-A1CV      TCGA-EM-A1CW 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A1YA      TCGA-EM-A1YB      TCGA-EM-A1YC      TCGA-EM-A1YD 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A1YE      TCGA-EM-A22I      TCGA-EM-A22J      TCGA-EM-A22L 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A22M      TCGA-EM-A22O      TCGA-EM-A22Q      TCGA-EM-A2CJ 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A2CK      TCGA-EM-A2CL      TCGA-EM-A2CN      TCGA-EM-A2CO 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A2CP      TCGA-EM-A2CQ      TCGA-EM-A2CR      TCGA-EM-A2CS 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A2CU      TCGA-EM-A2OV      TCGA-EM-A2OY      TCGA-EM-A2P1 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A3AI      TCGA-EM-A3AJ      TCGA-EM-A3AL      TCGA-EM-A3AN 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A3AO      TCGA-EM-A3AP      TCGA-EM-A3FJ      TCGA-EM-A3FL 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-EM-A3FN      TCGA-EM-A3FO      TCGA-EM-A3FP      TCGA-ET-A25G 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A25O      TCGA-ET-A2MY      TCGA-ET-A2MZ      TCGA-ET-A2N0 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A2N1      TCGA-ET-A2N4      TCGA-ET-A2N5      TCGA-ET-A39I 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A39J      TCGA-ET-A39L      TCGA-ET-A39M      TCGA-ET-A39N 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A39P      TCGA-ET-A39R      TCGA-ET-A39T      TCGA-ET-A3BN 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A3BP      TCGA-ET-A3BS      TCGA-ET-A3BT      TCGA-ET-A3BU 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A3BV      TCGA-ET-A3BW      TCGA-ET-A3BX      TCGA-ET-A3DO 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A3DP      TCGA-ET-A3DS      TCGA-ET-A3DT      TCGA-ET-A3DV 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-ET-A3DW      TCGA-FE-A22Z      TCGA-FE-A230      TCGA-FE-A231 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-FE-A232      TCGA-FE-A233      TCGA-FE-A234      TCGA-FE-A235 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-FE-A236      TCGA-FE-A237      TCGA-FE-A23A      TCGA-FY-A2QD 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-FY-A3BL      TCGA-FY-A3ON      TCGA-GE-A2C6      TCGA-H2-A2K9 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-IM-A3EB      TCGA-IM-A3ED      TCGA-J8-A3NZ      TCGA-J8-A3O0 
"NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" "NUP93 WILD-TYPE" 
     TCGA-J8-A3O1 
"NUP93 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP93 MUTATED        3      1      0      0
  NUP93 WILD-TYPE    151    163     58    114
D12V5, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             3             151
  CLUS_2             1             163
  CLUS_3             0              58
  CLUS_4             0             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NUP93 MUTATED        2      1      0      0      1
  NUP93 WILD-TYPE    101    130     85     95     75
D12V6, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             1             130
  CLUS_3             0              85
  CLUS_4             0              95
  CLUS_5             1              75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP93 MUTATED        1      1      2      0
  NUP93 WILD-TYPE    162    142    117     66
D12V7, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             1             162
  CLUS_2             1             142
  CLUS_3             2             117
  CLUS_4             0              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUP93 MUTATED        1      1      2
  NUP93 WILD-TYPE    175    124    188
D12V8, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             1             175
  CLUS_2             1             124
  CLUS_3             2             188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NUP93 MUTATED        1      1      0      2
  NUP93 WILD-TYPE    128    121    106    103
D12V9, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             1             128
  CLUS_2             1             121
  CLUS_3             0             106
  CLUS_4             2             103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NUP93 MUTATED        1      1      2
  NUP93 WILD-TYPE    159    117    182
D12V10, multiclass
        clus
vv       NUP93 MUTATED NUP93 WILD-TYPE
  CLUS_1             1             159
  CLUS_2             1             117
  CLUS_3             2             182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = GAGE2A MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        1      2      1
  GAGE2A WILD-TYPE    130    135    219
D13V1, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              130
  CLUS_2              2              135
  CLUS_3              1              219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAGE2A MUTATED        0      1      0      1      2
  GAGE2A WILD-TYPE     46    143     84     39    176
D13V2, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              0               46
  CLUS_2              1              143
  CLUS_3              0               84
  CLUS_4              1               39
  CLUS_5              2              176
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        0      0      1      0
  GAGE2A WILD-TYPE     63     61     39     51
D13V3, multiclass
[1] "Remove cluster labels:" "GAGE2A MUTATED"        
clus
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               1              214 
      TCGA-BJ-A0YZ       TCGA-BJ-A0Z0       TCGA-BJ-A0Z2       TCGA-BJ-A0Z3 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-BJ-A0Z9       TCGA-BJ-A0ZA       TCGA-BJ-A0ZB       TCGA-BJ-A0ZC 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-BJ-A0ZE       TCGA-BJ-A0ZG       TCGA-BJ-A0ZJ       TCGA-BJ-A18Y 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-BJ-A18Z       TCGA-BJ-A191       TCGA-BJ-A192       TCGA-BJ-A28R 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-BJ-A28S       TCGA-BJ-A28T       TCGA-BJ-A28V       TCGA-BJ-A28Z 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-BJ-A290       TCGA-BJ-A2N7       TCGA-BJ-A2N9       TCGA-BJ-A2NA 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-BJ-A2P4       TCGA-BJ-A3EZ       TCGA-BJ-A3F0       TCGA-CE-A13K 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CE-A27D       TCGA-CE-A3ME       TCGA-DE-A0Y2       TCGA-DE-A2OL 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DE-A3KN       TCGA-DJ-A13M       TCGA-DJ-A13O       TCGA-DJ-A13R 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A13S       TCGA-DJ-A13V       TCGA-DJ-A13W       TCGA-DJ-A13X 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A1QD       TCGA-DJ-A1QE       TCGA-DJ-A1QF       TCGA-DJ-A1QG 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A1QI       TCGA-DJ-A1QL       TCGA-DJ-A1QM       TCGA-DJ-A1QN 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A1QO       TCGA-DJ-A2PN       TCGA-DJ-A2PO       TCGA-DJ-A2PP 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A2PQ       TCGA-DJ-A2PR       TCGA-DJ-A2PS       TCGA-DJ-A2PU 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A2PV       TCGA-DJ-A2PW       TCGA-DJ-A2PY       TCGA-DJ-A2PZ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A2Q0       TCGA-DJ-A2Q1       TCGA-DJ-A2Q2       TCGA-DJ-A2Q4 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A2Q5       TCGA-DJ-A2Q6       TCGA-DJ-A2Q7       TCGA-DJ-A2Q8 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A2Q9       TCGA-DJ-A2QA       TCGA-DJ-A2QB       TCGA-DJ-A2QC 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DO-A1JZ       TCGA-DO-A1K0       TCGA-E3-A3DY       TCGA-E3-A3DZ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-E3-A3E0       TCGA-E3-A3E1       TCGA-E3-A3E3       TCGA-E3-A3E5 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-E8-A2EA       TCGA-E8-A2JQ       TCGA-EL-A3CL       TCGA-EL-A3CM 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3CN       TCGA-EL-A3CO       TCGA-EL-A3CP       TCGA-EL-A3CR 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3CS       TCGA-EL-A3CT       TCGA-EL-A3CU       TCGA-EL-A3CV 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3CW       TCGA-EL-A3CX       TCGA-EL-A3CY       TCGA-EL-A3CZ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3D0       TCGA-EL-A3D1       TCGA-EL-A3D4       TCGA-EL-A3D5 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3D6       TCGA-EL-A3GO       TCGA-EL-A3GP       TCGA-EL-A3GQ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3GR       TCGA-EL-A3GS       TCGA-EL-A3GU       TCGA-EL-A3GV 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3GW       TCGA-EL-A3GX       TCGA-EL-A3GY       TCGA-EL-A3GZ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3H1       TCGA-EL-A3H2       TCGA-EL-A3H3       TCGA-EL-A3H4 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3H5       TCGA-EL-A3H7       TCGA-EL-A3H8       TCGA-EL-A3MW 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3MX       TCGA-EL-A3MY       TCGA-EL-A3MZ       TCGA-EL-A3N2 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3N3       TCGA-EM-A1CT       TCGA-EM-A1CU       TCGA-EM-A1CV 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A1CW       TCGA-EM-A1YA       TCGA-EM-A1YB       TCGA-EM-A1YC 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A1YD       TCGA-EM-A1YE       TCGA-EM-A22I       TCGA-EM-A22J 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A22L       TCGA-EM-A22M       TCGA-EM-A22O       TCGA-EM-A22Q 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A2CJ       TCGA-EM-A2CK       TCGA-EM-A2CL       TCGA-EM-A2CN 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A2CO       TCGA-EM-A2CP       TCGA-EM-A2CQ       TCGA-EM-A2CR 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A2CS       TCGA-EM-A2CU       TCGA-EM-A2OV       TCGA-EM-A2OY 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A2P1       TCGA-EM-A3AI       TCGA-EM-A3AJ       TCGA-EM-A3AL 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A3AN       TCGA-EM-A3AO       TCGA-EM-A3AP       TCGA-EM-A3FJ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A3FL       TCGA-EM-A3FN       TCGA-EM-A3FO       TCGA-EM-A3FP 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A25G       TCGA-ET-A25O       TCGA-ET-A2MY       TCGA-ET-A2MZ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A2N0       TCGA-ET-A2N1       TCGA-ET-A2N4       TCGA-ET-A2N5 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A39I       TCGA-ET-A39J       TCGA-ET-A39L       TCGA-ET-A39M 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A39N       TCGA-ET-A39P       TCGA-ET-A39R       TCGA-ET-A39T 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A3BN       TCGA-ET-A3BP       TCGA-ET-A3BS       TCGA-ET-A3BT 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A3BU       TCGA-ET-A3BV       TCGA-ET-A3BW       TCGA-ET-A3BX 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A3DO       TCGA-ET-A3DP       TCGA-ET-A3DS       TCGA-ET-A3DT 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A3DV       TCGA-ET-A3DW       TCGA-FE-A22Z       TCGA-FE-A230 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-FE-A231       TCGA-FE-A232       TCGA-FE-A233       TCGA-FE-A234 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-FE-A235       TCGA-FE-A236       TCGA-FE-A237       TCGA-FE-A23A 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-FY-A2QD       TCGA-FY-A3BL       TCGA-FY-A3ON       TCGA-GE-A2C6 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-H2-A2K9       TCGA-IM-A3EB       TCGA-IM-A3ED       TCGA-J8-A3NZ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-J8-A3O0       TCGA-J8-A3O1 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  GAGE2A MUTATED        0      0      0      0      1      0      0
  GAGE2A WILD-TYPE     46     27     31     26     48     27      9
D13V4, multiclass
[1] "Remove cluster labels:" "GAGE2A MUTATED"        
clus
  GAGE2A MUTATED GAGE2A WILD-TYPE 
               1              214 
      TCGA-BJ-A0YZ       TCGA-BJ-A0Z0       TCGA-BJ-A0Z2       TCGA-BJ-A0Z3 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-BJ-A0Z9       TCGA-BJ-A0ZA       TCGA-BJ-A0ZB       TCGA-BJ-A0ZC 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-BJ-A0ZE       TCGA-BJ-A0ZG       TCGA-BJ-A0ZJ       TCGA-BJ-A18Y 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-BJ-A18Z       TCGA-BJ-A191       TCGA-BJ-A192       TCGA-BJ-A28R 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-BJ-A28S       TCGA-BJ-A28T       TCGA-BJ-A28V       TCGA-BJ-A28Z 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-BJ-A290       TCGA-BJ-A2N7       TCGA-BJ-A2N9       TCGA-BJ-A2NA 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-BJ-A2P4       TCGA-BJ-A3EZ       TCGA-BJ-A3F0       TCGA-CE-A13K 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-CE-A27D       TCGA-CE-A3ME       TCGA-DE-A0Y2       TCGA-DE-A2OL 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DE-A3KN       TCGA-DJ-A13M       TCGA-DJ-A13O       TCGA-DJ-A13R 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A13S       TCGA-DJ-A13V       TCGA-DJ-A13W       TCGA-DJ-A13X 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A1QD       TCGA-DJ-A1QE       TCGA-DJ-A1QF       TCGA-DJ-A1QG 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A1QI       TCGA-DJ-A1QL       TCGA-DJ-A1QM       TCGA-DJ-A1QN 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A1QO       TCGA-DJ-A2PN       TCGA-DJ-A2PO       TCGA-DJ-A2PP 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A2PQ       TCGA-DJ-A2PR       TCGA-DJ-A2PS       TCGA-DJ-A2PU 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A2PV       TCGA-DJ-A2PW       TCGA-DJ-A2PY       TCGA-DJ-A2PZ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A2Q0       TCGA-DJ-A2Q1       TCGA-DJ-A2Q2       TCGA-DJ-A2Q4 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A2Q5       TCGA-DJ-A2Q6       TCGA-DJ-A2Q7       TCGA-DJ-A2Q8 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DJ-A2Q9       TCGA-DJ-A2QA       TCGA-DJ-A2QB       TCGA-DJ-A2QC 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-DO-A1JZ       TCGA-DO-A1K0       TCGA-E3-A3DY       TCGA-E3-A3DZ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-E3-A3E0       TCGA-E3-A3E1       TCGA-E3-A3E3       TCGA-E3-A3E5 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-E8-A2EA       TCGA-E8-A2JQ       TCGA-EL-A3CL       TCGA-EL-A3CM 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3CN       TCGA-EL-A3CO       TCGA-EL-A3CP       TCGA-EL-A3CR 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3CS       TCGA-EL-A3CT       TCGA-EL-A3CU       TCGA-EL-A3CV 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3CW       TCGA-EL-A3CX       TCGA-EL-A3CY       TCGA-EL-A3CZ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3D0       TCGA-EL-A3D1       TCGA-EL-A3D4       TCGA-EL-A3D5 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3D6       TCGA-EL-A3GO       TCGA-EL-A3GP       TCGA-EL-A3GQ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3GR       TCGA-EL-A3GS       TCGA-EL-A3GU       TCGA-EL-A3GV 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3GW       TCGA-EL-A3GX       TCGA-EL-A3GY       TCGA-EL-A3GZ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3H1       TCGA-EL-A3H2       TCGA-EL-A3H3       TCGA-EL-A3H4 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3H5       TCGA-EL-A3H7       TCGA-EL-A3H8       TCGA-EL-A3MW 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3MX       TCGA-EL-A3MY       TCGA-EL-A3MZ       TCGA-EL-A3N2 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EL-A3N3       TCGA-EM-A1CT       TCGA-EM-A1CU       TCGA-EM-A1CV 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A1CW       TCGA-EM-A1YA       TCGA-EM-A1YB       TCGA-EM-A1YC 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A1YD       TCGA-EM-A1YE       TCGA-EM-A22I       TCGA-EM-A22J 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A22L       TCGA-EM-A22M       TCGA-EM-A22O       TCGA-EM-A22Q 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A2CJ       TCGA-EM-A2CK       TCGA-EM-A2CL       TCGA-EM-A2CN 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A2CO       TCGA-EM-A2CP       TCGA-EM-A2CQ       TCGA-EM-A2CR 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A2CS       TCGA-EM-A2CU       TCGA-EM-A2OV       TCGA-EM-A2OY 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A2P1       TCGA-EM-A3AI       TCGA-EM-A3AJ       TCGA-EM-A3AL 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A3AN       TCGA-EM-A3AO       TCGA-EM-A3AP       TCGA-EM-A3FJ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-EM-A3FL       TCGA-EM-A3FN       TCGA-EM-A3FO       TCGA-EM-A3FP 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A25G       TCGA-ET-A25O       TCGA-ET-A2MY       TCGA-ET-A2MZ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A2N0       TCGA-ET-A2N1       TCGA-ET-A2N4       TCGA-ET-A2N5 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A39I       TCGA-ET-A39J       TCGA-ET-A39L       TCGA-ET-A39M 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A39N       TCGA-ET-A39P       TCGA-ET-A39R       TCGA-ET-A39T 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A3BN       TCGA-ET-A3BP       TCGA-ET-A3BS       TCGA-ET-A3BT 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A3BU       TCGA-ET-A3BV       TCGA-ET-A3BW       TCGA-ET-A3BX 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A3DO       TCGA-ET-A3DP       TCGA-ET-A3DS       TCGA-ET-A3DT 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-ET-A3DV       TCGA-ET-A3DW       TCGA-FE-A22Z       TCGA-FE-A230 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-FE-A231       TCGA-FE-A232       TCGA-FE-A233       TCGA-FE-A234 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-FE-A235       TCGA-FE-A236       TCGA-FE-A237       TCGA-FE-A23A 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-FY-A2QD       TCGA-FY-A3BL       TCGA-FY-A3ON       TCGA-GE-A2C6 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-H2-A2K9       TCGA-IM-A3EB       TCGA-IM-A3ED       TCGA-J8-A3NZ 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
      TCGA-J8-A3O0       TCGA-J8-A3O1 
"GAGE2A WILD-TYPE" "GAGE2A WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        1      2      0      1
  GAGE2A WILD-TYPE    153    162     58    113
D13V5, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              153
  CLUS_2              2              162
  CLUS_3              0               58
  CLUS_4              1              113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  GAGE2A MUTATED        0      1      0      2      1
  GAGE2A WILD-TYPE    103    130     85     93     75
D13V6, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              0              103
  CLUS_2              1              130
  CLUS_3              0               85
  CLUS_4              2               93
  CLUS_5              1               75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        1      1      2      0
  GAGE2A WILD-TYPE    162    142    117     66
D13V7, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              1              162
  CLUS_2              1              142
  CLUS_3              2              117
  CLUS_4              0               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        0      1      3
  GAGE2A WILD-TYPE    176    124    187
D13V8, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              0              176
  CLUS_2              1              124
  CLUS_3              3              187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  GAGE2A MUTATED        0      1      2      0
  GAGE2A WILD-TYPE    129    121    104    105
D13V9, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              0              129
  CLUS_2              1              121
  CLUS_3              2              104
  CLUS_4              0              105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  GAGE2A MUTATED        0      1      2
  GAGE2A WILD-TYPE    160    117    182
D13V10, multiclass
        clus
vv       GAGE2A MUTATED GAGE2A WILD-TYPE
  CLUS_1              0              160
  CLUS_2              1              117
  CLUS_3              2              182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = ABL1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ABL1 MUTATED        3      1      1
  ABL1 WILD-TYPE    128    136    219
D14V1, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            3            128
  CLUS_2            1            136
  CLUS_3            1            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABL1 MUTATED        0      3      1      0      1
  ABL1 WILD-TYPE     46    141     83     40    177
D14V2, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            3            141
  CLUS_3            1             83
  CLUS_4            0             40
  CLUS_5            1            177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABL1 MUTATED        0      2      1      0
  ABL1 WILD-TYPE     63     59     39     51
D14V3, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            0             63
  CLUS_2            2             59
  CLUS_3            1             39
  CLUS_4            0             51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABL1 MUTATED        0      0      1      1      0      1      0
  ABL1 WILD-TYPE     46     27     30     25     49     26      9
D14V4, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0             27
  CLUS_3            1             30
  CLUS_4            1             25
  CLUS_5            0             49
  CLUS_6            1             26
  CLUS_7            0              9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABL1 MUTATED        1      3      1      0
  ABL1 WILD-TYPE    153    161     57    114
D14V5, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            1            153
  CLUS_2            3            161
  CLUS_3            1             57
  CLUS_4            0            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABL1 MUTATED        0      3      1      0      1
  ABL1 WILD-TYPE    103    128     84     95     75
D14V6, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            0            103
  CLUS_2            3            128
  CLUS_3            1             84
  CLUS_4            0             95
  CLUS_5            1             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABL1 MUTATED        1      3      0      1
  ABL1 WILD-TYPE    162    140    119     65
D14V7, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            1            162
  CLUS_2            3            140
  CLUS_3            0            119
  CLUS_4            1             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ABL1 MUTATED        1      2      2
  ABL1 WILD-TYPE    175    123    188
D14V8, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            1            175
  CLUS_2            2            123
  CLUS_3            2            188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABL1 MUTATED        1      2      1      0
  ABL1 WILD-TYPE    128    120    105    105
D14V9, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            1            128
  CLUS_2            2            120
  CLUS_3            1            105
  CLUS_4            0            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  ABL1 MUTATED        1      2      1
  ABL1 WILD-TYPE    159    116    183
D14V10, multiclass
        clus
vv       ABL1 MUTATED ABL1 WILD-TYPE
  CLUS_1            1            159
  CLUS_2            2            116
  CLUS_3            1            183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = LMTK2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMTK2 MUTATED        0      4      0
  LMTK2 WILD-TYPE    131    133    220
D15V1, multiclass
        clus
vv       LMTK2 MUTATED LMTK2 WILD-TYPE
  CLUS_1             0             131
  CLUS_2             4             133
  CLUS_3             0             220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LMTK2 MUTATED        0      1      1      0      2
  LMTK2 WILD-TYPE     46    143     83     40    176
D15V2, multiclass
        clus
vv       LMTK2 MUTATED LMTK2 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1             143
  CLUS_3             1              83
  CLUS_4             0              40
  CLUS_5             2             176
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMTK2 MUTATED        0      2      0      0
  LMTK2 WILD-TYPE     63     59     40     51
D15V3, multiclass
[1] "Remove cluster labels:" "LMTK2 MUTATED"         
clus
  LMTK2 MUTATED LMTK2 WILD-TYPE 
              2             213 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZG      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-BJ-A18Z      TCGA-BJ-A191      TCGA-BJ-A192      TCGA-BJ-A28R 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-BJ-A28S      TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-BJ-A290      TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-BJ-A2P4      TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-CE-A27D      TCGA-CE-A3MD      TCGA-CE-A3ME      TCGA-DE-A0Y2 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DE-A2OL      TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A13R      TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A13X      TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A1QG      TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A1QN      TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A2PP      TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A2PU      TCGA-DJ-A2PV      TCGA-DJ-A2PW      TCGA-DJ-A2PY 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A2PZ      TCGA-DJ-A2Q0      TCGA-DJ-A2Q1      TCGA-DJ-A2Q2 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A2Q4      TCGA-DJ-A2Q5      TCGA-DJ-A2Q6      TCGA-DJ-A2Q7 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A2Q8      TCGA-DJ-A2Q9      TCGA-DJ-A2QA      TCGA-DJ-A2QB 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A2QC      TCGA-DO-A1JZ      TCGA-DO-A1K0      TCGA-E3-A3DY 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-E3-A3DZ      TCGA-E3-A3E0      TCGA-E3-A3E1      TCGA-E3-A3E3 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-E3-A3E5      TCGA-E8-A2EA      TCGA-E8-A2JQ      TCGA-EL-A3CL 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3CM      TCGA-EL-A3CN      TCGA-EL-A3CO      TCGA-EL-A3CP 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3CR      TCGA-EL-A3CS      TCGA-EL-A3CT      TCGA-EL-A3CU 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3CV      TCGA-EL-A3CW      TCGA-EL-A3CX      TCGA-EL-A3CY 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3CZ      TCGA-EL-A3D0      TCGA-EL-A3D1      TCGA-EL-A3D4 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3D5      TCGA-EL-A3D6      TCGA-EL-A3GO      TCGA-EL-A3GP 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3GQ      TCGA-EL-A3GR      TCGA-EL-A3GS      TCGA-EL-A3GV 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3GW      TCGA-EL-A3GX      TCGA-EL-A3GY      TCGA-EL-A3GZ 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3H1      TCGA-EL-A3H2      TCGA-EL-A3H3      TCGA-EL-A3H4 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3H5      TCGA-EL-A3H7      TCGA-EL-A3H8      TCGA-EL-A3MW 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3MX      TCGA-EL-A3MY      TCGA-EL-A3MZ      TCGA-EL-A3N2 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A1CT      TCGA-EM-A1CU      TCGA-EM-A1CV      TCGA-EM-A1CW 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A1YA      TCGA-EM-A1YB      TCGA-EM-A1YC      TCGA-EM-A1YD 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A1YE      TCGA-EM-A22I      TCGA-EM-A22J      TCGA-EM-A22L 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A22M      TCGA-EM-A22O      TCGA-EM-A22Q      TCGA-EM-A2CJ 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A2CK      TCGA-EM-A2CL      TCGA-EM-A2CN      TCGA-EM-A2CO 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A2CP      TCGA-EM-A2CQ      TCGA-EM-A2CR      TCGA-EM-A2CS 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A2CU      TCGA-EM-A2OV      TCGA-EM-A2OY      TCGA-EM-A2P1 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A3AI      TCGA-EM-A3AJ      TCGA-EM-A3AL      TCGA-EM-A3AN 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A3AO      TCGA-EM-A3AP      TCGA-EM-A3FJ      TCGA-EM-A3FL 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A3FN      TCGA-EM-A3FO      TCGA-EM-A3FP      TCGA-ET-A25G 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A25O      TCGA-ET-A2MY      TCGA-ET-A2MZ      TCGA-ET-A2N0 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A2N1      TCGA-ET-A2N4      TCGA-ET-A2N5      TCGA-ET-A39I 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A39J      TCGA-ET-A39L      TCGA-ET-A39M      TCGA-ET-A39N 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A39P      TCGA-ET-A39R      TCGA-ET-A39T      TCGA-ET-A3BN 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A3BP      TCGA-ET-A3BS      TCGA-ET-A3BT      TCGA-ET-A3BU 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A3BV      TCGA-ET-A3BW      TCGA-ET-A3BX      TCGA-ET-A3DO 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A3DP      TCGA-ET-A3DS      TCGA-ET-A3DT      TCGA-ET-A3DV 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A3DW      TCGA-FE-A22Z      TCGA-FE-A230      TCGA-FE-A231 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-FE-A232      TCGA-FE-A233      TCGA-FE-A234      TCGA-FE-A235 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-FE-A236      TCGA-FE-A237      TCGA-FE-A23A      TCGA-FY-A2QD 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-FY-A3BL      TCGA-FY-A3ON      TCGA-GE-A2C6      TCGA-H2-A2K9 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IM-A3EB      TCGA-IM-A3ED      TCGA-J8-A3NZ      TCGA-J8-A3O0 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-J8-A3O1 
"LMTK2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  LMTK2 MUTATED        0      0      1      0      0      0      1
  LMTK2 WILD-TYPE     46     27     30     26     49     27      8
D15V4, multiclass
[1] "Remove cluster labels:" "LMTK2 MUTATED"         
clus
  LMTK2 MUTATED LMTK2 WILD-TYPE 
              2             213 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZG      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-BJ-A18Z      TCGA-BJ-A191      TCGA-BJ-A192      TCGA-BJ-A28R 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-BJ-A28S      TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-BJ-A290      TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-BJ-A2P4      TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-CE-A27D      TCGA-CE-A3MD      TCGA-CE-A3ME      TCGA-DE-A0Y2 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DE-A2OL      TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A13R      TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A13X      TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A1QG      TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A1QN      TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A2PP      TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A2PU      TCGA-DJ-A2PV      TCGA-DJ-A2PW      TCGA-DJ-A2PY 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A2PZ      TCGA-DJ-A2Q0      TCGA-DJ-A2Q1      TCGA-DJ-A2Q2 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A2Q4      TCGA-DJ-A2Q5      TCGA-DJ-A2Q6      TCGA-DJ-A2Q7 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A2Q8      TCGA-DJ-A2Q9      TCGA-DJ-A2QA      TCGA-DJ-A2QB 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-DJ-A2QC      TCGA-DO-A1JZ      TCGA-DO-A1K0      TCGA-E3-A3DY 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-E3-A3DZ      TCGA-E3-A3E0      TCGA-E3-A3E1      TCGA-E3-A3E3 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-E3-A3E5      TCGA-E8-A2EA      TCGA-E8-A2JQ      TCGA-EL-A3CL 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3CM      TCGA-EL-A3CN      TCGA-EL-A3CO      TCGA-EL-A3CP 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3CR      TCGA-EL-A3CS      TCGA-EL-A3CT      TCGA-EL-A3CU 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3CV      TCGA-EL-A3CW      TCGA-EL-A3CX      TCGA-EL-A3CY 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3CZ      TCGA-EL-A3D0      TCGA-EL-A3D1      TCGA-EL-A3D4 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3D5      TCGA-EL-A3D6      TCGA-EL-A3GO      TCGA-EL-A3GP 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3GQ      TCGA-EL-A3GR      TCGA-EL-A3GS      TCGA-EL-A3GV 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3GW      TCGA-EL-A3GX      TCGA-EL-A3GY      TCGA-EL-A3GZ 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3H1      TCGA-EL-A3H2      TCGA-EL-A3H3      TCGA-EL-A3H4 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3H5      TCGA-EL-A3H7      TCGA-EL-A3H8      TCGA-EL-A3MW 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EL-A3MX      TCGA-EL-A3MY      TCGA-EL-A3MZ      TCGA-EL-A3N2 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A1CT      TCGA-EM-A1CU      TCGA-EM-A1CV      TCGA-EM-A1CW 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A1YA      TCGA-EM-A1YB      TCGA-EM-A1YC      TCGA-EM-A1YD 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A1YE      TCGA-EM-A22I      TCGA-EM-A22J      TCGA-EM-A22L 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A22M      TCGA-EM-A22O      TCGA-EM-A22Q      TCGA-EM-A2CJ 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A2CK      TCGA-EM-A2CL      TCGA-EM-A2CN      TCGA-EM-A2CO 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A2CP      TCGA-EM-A2CQ      TCGA-EM-A2CR      TCGA-EM-A2CS 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A2CU      TCGA-EM-A2OV      TCGA-EM-A2OY      TCGA-EM-A2P1 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A3AI      TCGA-EM-A3AJ      TCGA-EM-A3AL      TCGA-EM-A3AN 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A3AO      TCGA-EM-A3AP      TCGA-EM-A3FJ      TCGA-EM-A3FL 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-EM-A3FN      TCGA-EM-A3FO      TCGA-EM-A3FP      TCGA-ET-A25G 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A25O      TCGA-ET-A2MY      TCGA-ET-A2MZ      TCGA-ET-A2N0 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A2N1      TCGA-ET-A2N4      TCGA-ET-A2N5      TCGA-ET-A39I 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A39J      TCGA-ET-A39L      TCGA-ET-A39M      TCGA-ET-A39N 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A39P      TCGA-ET-A39R      TCGA-ET-A39T      TCGA-ET-A3BN 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A3BP      TCGA-ET-A3BS      TCGA-ET-A3BT      TCGA-ET-A3BU 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A3BV      TCGA-ET-A3BW      TCGA-ET-A3BX      TCGA-ET-A3DO 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A3DP      TCGA-ET-A3DS      TCGA-ET-A3DT      TCGA-ET-A3DV 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-ET-A3DW      TCGA-FE-A22Z      TCGA-FE-A230      TCGA-FE-A231 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-FE-A232      TCGA-FE-A233      TCGA-FE-A234      TCGA-FE-A235 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-FE-A236      TCGA-FE-A237      TCGA-FE-A23A      TCGA-FY-A2QD 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-FY-A3BL      TCGA-FY-A3ON      TCGA-GE-A2C6      TCGA-H2-A2K9 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-IM-A3EB      TCGA-IM-A3ED      TCGA-J8-A3NZ      TCGA-J8-A3O0 
"LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" "LMTK2 WILD-TYPE" 
     TCGA-J8-A3O1 
"LMTK2 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMTK2 MUTATED        2      1      0      1
  LMTK2 WILD-TYPE    152    163     58    113
D15V5, multiclass
        clus
vv       LMTK2 MUTATED LMTK2 WILD-TYPE
  CLUS_1             2             152
  CLUS_2             1             163
  CLUS_3             0              58
  CLUS_4             1             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  LMTK2 MUTATED        2      1      0      1      0
  LMTK2 WILD-TYPE    101    130     85     94     76
D15V6, multiclass
        clus
vv       LMTK2 MUTATED LMTK2 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             1             130
  CLUS_3             0              85
  CLUS_4             1              94
  CLUS_5             0              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMTK2 MUTATED        1      1      1      1
  LMTK2 WILD-TYPE    162    142    118     65
D15V7, multiclass
        clus
vv       LMTK2 MUTATED LMTK2 WILD-TYPE
  CLUS_1             1             162
  CLUS_2             1             142
  CLUS_3             1             118
  CLUS_4             1              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMTK2 MUTATED        2      1      1
  LMTK2 WILD-TYPE    174    124    189
D15V8, multiclass
        clus
vv       LMTK2 MUTATED LMTK2 WILD-TYPE
  CLUS_1             2             174
  CLUS_2             1             124
  CLUS_3             1             189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  LMTK2 MUTATED        2      0      1      0
  LMTK2 WILD-TYPE    127    122    105    105
D15V9, multiclass
        clus
vv       LMTK2 MUTATED LMTK2 WILD-TYPE
  CLUS_1             2             127
  CLUS_2             0             122
  CLUS_3             1             105
  CLUS_4             0             105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  LMTK2 MUTATED        2      0      1
  LMTK2 WILD-TYPE    158    118    183
D15V10, multiclass
        clus
vv       LMTK2 MUTATED LMTK2 WILD-TYPE
  CLUS_1             2             158
  CLUS_2             0             118
  CLUS_3             1             183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = SRPX MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        2      0      2
  SRPX WILD-TYPE    129    137    218
D16V1, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            2            129
  CLUS_2            0            137
  CLUS_3            2            218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRPX MUTATED        0      2      1      0      1
  SRPX WILD-TYPE     46    142     83     40    177
D16V2, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            0             46
  CLUS_2            2            142
  CLUS_3            1             83
  CLUS_4            0             40
  CLUS_5            1            177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        1      0      0      1
  SRPX WILD-TYPE     62     61     40     50
D16V3, multiclass
[1] "Remove cluster labels:" "SRPX MUTATED"          
clus
  SRPX MUTATED SRPX WILD-TYPE 
             2            213 
    TCGA-BJ-A0YZ     TCGA-BJ-A0Z0     TCGA-BJ-A0Z2     TCGA-BJ-A0Z3 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-BJ-A0Z9     TCGA-BJ-A0ZA     TCGA-BJ-A0ZB     TCGA-BJ-A0ZC 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-BJ-A0ZE     TCGA-BJ-A0ZG     TCGA-BJ-A0ZJ     TCGA-BJ-A18Y 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-BJ-A18Z     TCGA-BJ-A191     TCGA-BJ-A192     TCGA-BJ-A28R 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-BJ-A28S     TCGA-BJ-A28T     TCGA-BJ-A28V     TCGA-BJ-A290 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-BJ-A2N7     TCGA-BJ-A2N9     TCGA-BJ-A2NA     TCGA-BJ-A2P4 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-BJ-A3EZ     TCGA-BJ-A3F0     TCGA-CE-A13K     TCGA-CE-A27D 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-CE-A3MD     TCGA-CE-A3ME     TCGA-DE-A0Y2     TCGA-DE-A2OL 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DE-A3KN     TCGA-DJ-A13M     TCGA-DJ-A13O     TCGA-DJ-A13R 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A13S     TCGA-DJ-A13V     TCGA-DJ-A13W     TCGA-DJ-A13X 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A1QD     TCGA-DJ-A1QE     TCGA-DJ-A1QF     TCGA-DJ-A1QG 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A1QI     TCGA-DJ-A1QL     TCGA-DJ-A1QM     TCGA-DJ-A1QN 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A1QO     TCGA-DJ-A2PN     TCGA-DJ-A2PO     TCGA-DJ-A2PP 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A2PQ     TCGA-DJ-A2PR     TCGA-DJ-A2PS     TCGA-DJ-A2PU 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A2PV     TCGA-DJ-A2PW     TCGA-DJ-A2PY     TCGA-DJ-A2PZ 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A2Q0     TCGA-DJ-A2Q1     TCGA-DJ-A2Q2     TCGA-DJ-A2Q4 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A2Q5     TCGA-DJ-A2Q6     TCGA-DJ-A2Q7     TCGA-DJ-A2Q8 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A2Q9     TCGA-DJ-A2QA     TCGA-DJ-A2QB     TCGA-DJ-A2QC 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DO-A1JZ     TCGA-DO-A1K0     TCGA-E3-A3DY     TCGA-E3-A3DZ 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E3-A3E0     TCGA-E3-A3E1     TCGA-E3-A3E3     TCGA-E3-A3E5 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E8-A2EA     TCGA-E8-A2JQ     TCGA-EL-A3CL     TCGA-EL-A3CM 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3CN     TCGA-EL-A3CO     TCGA-EL-A3CP     TCGA-EL-A3CR 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3CS     TCGA-EL-A3CT     TCGA-EL-A3CU     TCGA-EL-A3CV 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3CW     TCGA-EL-A3CX     TCGA-EL-A3CY     TCGA-EL-A3CZ 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3D0     TCGA-EL-A3D1     TCGA-EL-A3D4     TCGA-EL-A3D5 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3D6     TCGA-EL-A3GO     TCGA-EL-A3GP     TCGA-EL-A3GQ 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3GR     TCGA-EL-A3GS     TCGA-EL-A3GU     TCGA-EL-A3GV 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3GW     TCGA-EL-A3GX     TCGA-EL-A3GY     TCGA-EL-A3GZ 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3H1     TCGA-EL-A3H2     TCGA-EL-A3H3     TCGA-EL-A3H4 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3H5     TCGA-EL-A3H7     TCGA-EL-A3H8     TCGA-EL-A3MW 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3MX     TCGA-EL-A3MY     TCGA-EL-A3MZ     TCGA-EL-A3N2 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3N3     TCGA-EM-A1CT     TCGA-EM-A1CU     TCGA-EM-A1CV 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A1CW     TCGA-EM-A1YA     TCGA-EM-A1YB     TCGA-EM-A1YC 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A1YD     TCGA-EM-A1YE     TCGA-EM-A22I     TCGA-EM-A22J 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A22L     TCGA-EM-A22M     TCGA-EM-A22O     TCGA-EM-A22Q 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A2CJ     TCGA-EM-A2CK     TCGA-EM-A2CL     TCGA-EM-A2CN 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A2CO     TCGA-EM-A2CP     TCGA-EM-A2CQ     TCGA-EM-A2CR 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A2CS     TCGA-EM-A2CU     TCGA-EM-A2OV     TCGA-EM-A2OY 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A2P1     TCGA-EM-A3AI     TCGA-EM-A3AJ     TCGA-EM-A3AL 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A3AN     TCGA-EM-A3AO     TCGA-EM-A3AP     TCGA-EM-A3FJ 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A3FN     TCGA-EM-A3FO     TCGA-EM-A3FP     TCGA-ET-A25G 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A25O     TCGA-ET-A2MY     TCGA-ET-A2MZ     TCGA-ET-A2N0 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A2N1     TCGA-ET-A2N4     TCGA-ET-A2N5     TCGA-ET-A39I 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A39J     TCGA-ET-A39L     TCGA-ET-A39M     TCGA-ET-A39N 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A39P     TCGA-ET-A39R     TCGA-ET-A39T     TCGA-ET-A3BN 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A3BP     TCGA-ET-A3BS     TCGA-ET-A3BT     TCGA-ET-A3BU 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A3BV     TCGA-ET-A3BW     TCGA-ET-A3BX     TCGA-ET-A3DO 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A3DP     TCGA-ET-A3DS     TCGA-ET-A3DT     TCGA-ET-A3DV 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A3DW     TCGA-FE-A22Z     TCGA-FE-A230     TCGA-FE-A231 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-FE-A232     TCGA-FE-A233     TCGA-FE-A234     TCGA-FE-A235 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-FE-A236     TCGA-FE-A237     TCGA-FE-A23A     TCGA-FY-A2QD 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-FY-A3BL     TCGA-FY-A3ON     TCGA-GE-A2C6     TCGA-H2-A2K9 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-IM-A3EB     TCGA-IM-A3ED     TCGA-J8-A3NZ     TCGA-J8-A3O0 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-J8-A3O1 
"SRPX WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  SRPX MUTATED        1      0      0      1      0      0      0
  SRPX WILD-TYPE     45     27     31     25     49     27      9
D16V4, multiclass
[1] "Remove cluster labels:" "SRPX MUTATED"          
clus
  SRPX MUTATED SRPX WILD-TYPE 
             2            213 
    TCGA-BJ-A0YZ     TCGA-BJ-A0Z0     TCGA-BJ-A0Z2     TCGA-BJ-A0Z3 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-BJ-A0Z9     TCGA-BJ-A0ZA     TCGA-BJ-A0ZB     TCGA-BJ-A0ZC 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-BJ-A0ZE     TCGA-BJ-A0ZG     TCGA-BJ-A0ZJ     TCGA-BJ-A18Y 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-BJ-A18Z     TCGA-BJ-A191     TCGA-BJ-A192     TCGA-BJ-A28R 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-BJ-A28S     TCGA-BJ-A28T     TCGA-BJ-A28V     TCGA-BJ-A290 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-BJ-A2N7     TCGA-BJ-A2N9     TCGA-BJ-A2NA     TCGA-BJ-A2P4 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-BJ-A3EZ     TCGA-BJ-A3F0     TCGA-CE-A13K     TCGA-CE-A27D 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-CE-A3MD     TCGA-CE-A3ME     TCGA-DE-A0Y2     TCGA-DE-A2OL 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DE-A3KN     TCGA-DJ-A13M     TCGA-DJ-A13O     TCGA-DJ-A13R 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A13S     TCGA-DJ-A13V     TCGA-DJ-A13W     TCGA-DJ-A13X 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A1QD     TCGA-DJ-A1QE     TCGA-DJ-A1QF     TCGA-DJ-A1QG 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A1QI     TCGA-DJ-A1QL     TCGA-DJ-A1QM     TCGA-DJ-A1QN 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A1QO     TCGA-DJ-A2PN     TCGA-DJ-A2PO     TCGA-DJ-A2PP 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A2PQ     TCGA-DJ-A2PR     TCGA-DJ-A2PS     TCGA-DJ-A2PU 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A2PV     TCGA-DJ-A2PW     TCGA-DJ-A2PY     TCGA-DJ-A2PZ 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A2Q0     TCGA-DJ-A2Q1     TCGA-DJ-A2Q2     TCGA-DJ-A2Q4 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A2Q5     TCGA-DJ-A2Q6     TCGA-DJ-A2Q7     TCGA-DJ-A2Q8 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DJ-A2Q9     TCGA-DJ-A2QA     TCGA-DJ-A2QB     TCGA-DJ-A2QC 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-DO-A1JZ     TCGA-DO-A1K0     TCGA-E3-A3DY     TCGA-E3-A3DZ 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E3-A3E0     TCGA-E3-A3E1     TCGA-E3-A3E3     TCGA-E3-A3E5 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-E8-A2EA     TCGA-E8-A2JQ     TCGA-EL-A3CL     TCGA-EL-A3CM 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3CN     TCGA-EL-A3CO     TCGA-EL-A3CP     TCGA-EL-A3CR 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3CS     TCGA-EL-A3CT     TCGA-EL-A3CU     TCGA-EL-A3CV 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3CW     TCGA-EL-A3CX     TCGA-EL-A3CY     TCGA-EL-A3CZ 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3D0     TCGA-EL-A3D1     TCGA-EL-A3D4     TCGA-EL-A3D5 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3D6     TCGA-EL-A3GO     TCGA-EL-A3GP     TCGA-EL-A3GQ 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3GR     TCGA-EL-A3GS     TCGA-EL-A3GU     TCGA-EL-A3GV 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3GW     TCGA-EL-A3GX     TCGA-EL-A3GY     TCGA-EL-A3GZ 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3H1     TCGA-EL-A3H2     TCGA-EL-A3H3     TCGA-EL-A3H4 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3H5     TCGA-EL-A3H7     TCGA-EL-A3H8     TCGA-EL-A3MW 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3MX     TCGA-EL-A3MY     TCGA-EL-A3MZ     TCGA-EL-A3N2 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EL-A3N3     TCGA-EM-A1CT     TCGA-EM-A1CU     TCGA-EM-A1CV 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A1CW     TCGA-EM-A1YA     TCGA-EM-A1YB     TCGA-EM-A1YC 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A1YD     TCGA-EM-A1YE     TCGA-EM-A22I     TCGA-EM-A22J 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A22L     TCGA-EM-A22M     TCGA-EM-A22O     TCGA-EM-A22Q 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A2CJ     TCGA-EM-A2CK     TCGA-EM-A2CL     TCGA-EM-A2CN 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A2CO     TCGA-EM-A2CP     TCGA-EM-A2CQ     TCGA-EM-A2CR 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A2CS     TCGA-EM-A2CU     TCGA-EM-A2OV     TCGA-EM-A2OY 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A2P1     TCGA-EM-A3AI     TCGA-EM-A3AJ     TCGA-EM-A3AL 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A3AN     TCGA-EM-A3AO     TCGA-EM-A3AP     TCGA-EM-A3FJ 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-EM-A3FN     TCGA-EM-A3FO     TCGA-EM-A3FP     TCGA-ET-A25G 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A25O     TCGA-ET-A2MY     TCGA-ET-A2MZ     TCGA-ET-A2N0 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A2N1     TCGA-ET-A2N4     TCGA-ET-A2N5     TCGA-ET-A39I 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A39J     TCGA-ET-A39L     TCGA-ET-A39M     TCGA-ET-A39N 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A39P     TCGA-ET-A39R     TCGA-ET-A39T     TCGA-ET-A3BN 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A3BP     TCGA-ET-A3BS     TCGA-ET-A3BT     TCGA-ET-A3BU 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A3BV     TCGA-ET-A3BW     TCGA-ET-A3BX     TCGA-ET-A3DO 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A3DP     TCGA-ET-A3DS     TCGA-ET-A3DT     TCGA-ET-A3DV 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-ET-A3DW     TCGA-FE-A22Z     TCGA-FE-A230     TCGA-FE-A231 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-FE-A232     TCGA-FE-A233     TCGA-FE-A234     TCGA-FE-A235 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-FE-A236     TCGA-FE-A237     TCGA-FE-A23A     TCGA-FY-A2QD 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-FY-A3BL     TCGA-FY-A3ON     TCGA-GE-A2C6     TCGA-H2-A2K9 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-IM-A3EB     TCGA-IM-A3ED     TCGA-J8-A3NZ     TCGA-J8-A3O0 
"SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" "SRPX WILD-TYPE" 
    TCGA-J8-A3O1 
"SRPX WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        1      2      1      0
  SRPX WILD-TYPE    153    162     57    114
D16V5, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1            153
  CLUS_2            2            162
  CLUS_3            1             57
  CLUS_4            0            114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  SRPX MUTATED        1      2      1      0      0
  SRPX WILD-TYPE    102    129     84     95     76
D16V6, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1            102
  CLUS_2            2            129
  CLUS_3            1             84
  CLUS_4            0             95
  CLUS_5            0             76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        1      2      1      0
  SRPX WILD-TYPE    162    141    118     66
D16V7, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1            162
  CLUS_2            2            141
  CLUS_3            1            118
  CLUS_4            0             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        1      2      1
  SRPX WILD-TYPE    175    123    189
D16V8, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            1            175
  CLUS_2            2            123
  CLUS_3            1            189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  SRPX MUTATED        2      1      0      0
  SRPX WILD-TYPE    127    121    106    105
D16V9, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            2            127
  CLUS_2            1            121
  CLUS_3            0            106
  CLUS_4            0            105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  SRPX MUTATED        2      1      0
  SRPX WILD-TYPE    158    117    184
D16V10, multiclass
        clus
vv       SRPX MUTATED SRPX WILD-TYPE
  CLUS_1            2            158
  CLUS_2            1            117
  CLUS_3            0            184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = PPM1D MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPM1D MUTATED        2      0      4
  PPM1D WILD-TYPE    129    137    216
D17V1, multiclass
        clus
vv       PPM1D MUTATED PPM1D WILD-TYPE
  CLUS_1             2             129
  CLUS_2             0             137
  CLUS_3             4             216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPM1D MUTATED        0      1      0      1      4
  PPM1D WILD-TYPE     46    143     84     39    174
D17V2, multiclass
        clus
vv       PPM1D MUTATED PPM1D WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1             143
  CLUS_3             0              84
  CLUS_4             1              39
  CLUS_5             4             174
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPM1D MUTATED        0      1      0      2
  PPM1D WILD-TYPE     63     60     40     49
D17V3, multiclass
        clus
vv       PPM1D MUTATED PPM1D WILD-TYPE
  CLUS_1             0              63
  CLUS_2             1              60
  CLUS_3             0              40
  CLUS_4             2              49
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PPM1D MUTATED        0      0      1      0      2      0      0
  PPM1D WILD-TYPE     46     27     30     26     47     27      9
D17V4, multiclass
        clus
vv       PPM1D MUTATED PPM1D WILD-TYPE
  CLUS_1             0              46
  CLUS_2             0              27
  CLUS_3             1              30
  CLUS_4             0              26
  CLUS_5             2              47
  CLUS_6             0              27
  CLUS_7             0               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPM1D MUTATED        2      1      0      3
  PPM1D WILD-TYPE    152    163     58    111
D17V5, multiclass
        clus
vv       PPM1D MUTATED PPM1D WILD-TYPE
  CLUS_1             2             152
  CLUS_2             1             163
  CLUS_3             0              58
  CLUS_4             3             111
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PPM1D MUTATED        1      0      1      3      1
  PPM1D WILD-TYPE    102    131     84     92     75
D17V6, multiclass
        clus
vv       PPM1D MUTATED PPM1D WILD-TYPE
  CLUS_1             1             102
  CLUS_2             0             131
  CLUS_3             1              84
  CLUS_4             3              92
  CLUS_5             1              75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPM1D MUTATED        2      1      3      0
  PPM1D WILD-TYPE    161    142    116     66
D17V7, multiclass
        clus
vv       PPM1D MUTATED PPM1D WILD-TYPE
  CLUS_1             2             161
  CLUS_2             1             142
  CLUS_3             3             116
  CLUS_4             0              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPM1D MUTATED        2      0      4
  PPM1D WILD-TYPE    174    125    186
D17V8, multiclass
        clus
vv       PPM1D MUTATED PPM1D WILD-TYPE
  CLUS_1             2             174
  CLUS_2             0             125
  CLUS_3             4             186
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PPM1D MUTATED        2      0      2      2
  PPM1D WILD-TYPE    127    122    104    103
D17V9, multiclass
        clus
vv       PPM1D MUTATED PPM1D WILD-TYPE
  CLUS_1             2             127
  CLUS_2             0             122
  CLUS_3             2             104
  CLUS_4             2             103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PPM1D MUTATED        2      1      3
  PPM1D WILD-TYPE    158    117    181
D17V10, multiclass
        clus
vv       PPM1D MUTATED PPM1D WILD-TYPE
  CLUS_1             2             158
  CLUS_2             1             117
  CLUS_3             3             181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = TG MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  TG MUTATED        4     10      6
  TG WILD-TYPE    127    127    214
D18V1, multiclass
        clus
vv       TG MUTATED TG WILD-TYPE
  CLUS_1          4          127
  CLUS_2         10          127
  CLUS_3          6          214
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TG MUTATED        1     12      0      0      7
  TG WILD-TYPE     45    132     84     40    171
D18V2, multiclass
        clus
vv       TG MUTATED TG WILD-TYPE
  CLUS_1          1           45
  CLUS_2         12          132
  CLUS_3          0           84
  CLUS_4          0           40
  CLUS_5          7          171
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TG MUTATED        1      4      5      0
  TG WILD-TYPE     62     57     35     51
D18V3, multiclass
        clus
vv       TG MUTATED TG WILD-TYPE
  CLUS_1          1           62
  CLUS_2          4           57
  CLUS_3          5           35
  CLUS_4          0           51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TG MUTATED        2      0      2      2      2      2      0
  TG WILD-TYPE     44     27     29     24     47     25      9
D18V4, multiclass
        clus
vv       TG MUTATED TG WILD-TYPE
  CLUS_1          2           44
  CLUS_2          0           27
  CLUS_3          2           29
  CLUS_4          2           24
  CLUS_5          2           47
  CLUS_6          2           25
  CLUS_7          0            9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TG MUTATED        4     13      1      2
  TG WILD-TYPE    150    151     57    112
D18V5, multiclass
        clus
vv       TG MUTATED TG WILD-TYPE
  CLUS_1          4          150
  CLUS_2         13          151
  CLUS_3          1           57
  CLUS_4          2          112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TG MUTATED        3     12      1      2      2
  TG WILD-TYPE    100    119     84     93     74
D18V6, multiclass
        clus
vv       TG MUTATED TG WILD-TYPE
  CLUS_1          3          100
  CLUS_2         12          119
  CLUS_3          1           84
  CLUS_4          2           93
  CLUS_5          2           74
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TG MUTATED        2     11      4      3
  TG WILD-TYPE    161    132    115     63
D18V7, multiclass
        clus
vv       TG MUTATED TG WILD-TYPE
  CLUS_1          2          161
  CLUS_2         11          132
  CLUS_3          4          115
  CLUS_4          3           63
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  TG MUTATED        1     12      7
  TG WILD-TYPE    175    113    183
D18V8, multiclass
        clus
vv       TG MUTATED TG WILD-TYPE
  CLUS_1          1          175
  CLUS_2         12          113
  CLUS_3          7          183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TG MUTATED        0     11      4      3
  TG WILD-TYPE    129    111    102    102
D18V9, multiclass
        clus
vv       TG MUTATED TG WILD-TYPE
  CLUS_1          0          129
  CLUS_2         11          111
  CLUS_3          4          102
  CLUS_4          3          102
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  TG MUTATED        1     11      6
  TG WILD-TYPE    159    107    178
D18V10, multiclass
        clus
vv       TG MUTATED TG WILD-TYPE
  CLUS_1          1          159
  CLUS_2         11          107
  CLUS_3          6          178
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = PTCD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCD1 MUTATED        1      1      1
  PTCD1 WILD-TYPE    130    136    219
D19V1, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             1             130
  CLUS_2             1             136
  CLUS_3             1             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTCD1 MUTATED        0      1      0      0      2
  PTCD1 WILD-TYPE     46    143     84     40    176
D19V2, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1             143
  CLUS_3             0              84
  CLUS_4             0              40
  CLUS_5             2             176
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCD1 MUTATED        1      2      0      0
  PTCD1 WILD-TYPE     62     59     40     51
D19V3, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             1              62
  CLUS_2             2              59
  CLUS_3             0              40
  CLUS_4             0              51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PTCD1 MUTATED        1      0      1      0      0      1      0
  PTCD1 WILD-TYPE     45     27     30     26     49     26      9
D19V4, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             0              27
  CLUS_3             1              30
  CLUS_4             0              26
  CLUS_5             0              49
  CLUS_6             1              26
  CLUS_7             0               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCD1 MUTATED        2      1      0      0
  PTCD1 WILD-TYPE    152    163     58    114
D19V5, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             2             152
  CLUS_2             1             163
  CLUS_3             0              58
  CLUS_4             0             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PTCD1 MUTATED        2      1      0      0      0
  PTCD1 WILD-TYPE    101    130     85     95     76
D19V6, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             1             130
  CLUS_3             0              85
  CLUS_4             0              95
  CLUS_5             0              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCD1 MUTATED        2      0      0      1
  PTCD1 WILD-TYPE    161    143    119     65
D19V7, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             2             161
  CLUS_2             0             143
  CLUS_3             0             119
  CLUS_4             1              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCD1 MUTATED        2      1      0
  PTCD1 WILD-TYPE    174    124    190
D19V8, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             2             174
  CLUS_2             1             124
  CLUS_3             0             190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTCD1 MUTATED        2      1      0      0
  PTCD1 WILD-TYPE    127    121    106    105
D19V9, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             2             127
  CLUS_2             1             121
  CLUS_3             0             106
  CLUS_4             0             105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PTCD1 MUTATED        2      1      0
  PTCD1 WILD-TYPE    158    117    184
D19V10, multiclass
        clus
vv       PTCD1 MUTATED PTCD1 WILD-TYPE
  CLUS_1             2             158
  CLUS_2             1             117
  CLUS_3             0             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = TSC22D1 MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSC22D1 MUTATED        0      2      2
  TSC22D1 WILD-TYPE    131    135    218
D20V1, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               0               131
  CLUS_2               2               135
  CLUS_3               2               218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSC22D1 MUTATED        1      2      0      1      0
  TSC22D1 WILD-TYPE     45    142     84     39    178
D20V2, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               1                45
  CLUS_2               2               142
  CLUS_3               0                84
  CLUS_4               1                39
  CLUS_5               0               178
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC22D1 MUTATED        1      0      0      1
  TSC22D1 WILD-TYPE     62     61     40     50
D20V3, multiclass
[1] "Remove cluster labels:" "TSC22D1 MUTATED"       
clus
  TSC22D1 MUTATED TSC22D1 WILD-TYPE 
                2               213 
       TCGA-BJ-A0YZ        TCGA-BJ-A0Z0        TCGA-BJ-A0Z2        TCGA-BJ-A0Z3 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-BJ-A0Z9        TCGA-BJ-A0ZA        TCGA-BJ-A0ZB        TCGA-BJ-A0ZC 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-BJ-A0ZE        TCGA-BJ-A0ZG        TCGA-BJ-A0ZJ        TCGA-BJ-A18Y 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-BJ-A18Z        TCGA-BJ-A191        TCGA-BJ-A192        TCGA-BJ-A28R 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-BJ-A28S        TCGA-BJ-A28T        TCGA-BJ-A28V        TCGA-BJ-A28Z 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-BJ-A290        TCGA-BJ-A2N7        TCGA-BJ-A2N9        TCGA-BJ-A2NA 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-BJ-A2P4        TCGA-BJ-A3EZ        TCGA-BJ-A3F0        TCGA-CE-A13K 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-CE-A27D        TCGA-CE-A3MD        TCGA-CE-A3ME        TCGA-DE-A0Y2 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DE-A2OL        TCGA-DE-A3KN        TCGA-DJ-A13M        TCGA-DJ-A13O 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A13R        TCGA-DJ-A13S        TCGA-DJ-A13V        TCGA-DJ-A13W 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A13X        TCGA-DJ-A1QD        TCGA-DJ-A1QE        TCGA-DJ-A1QF 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A1QG        TCGA-DJ-A1QI        TCGA-DJ-A1QL        TCGA-DJ-A1QM 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A1QN        TCGA-DJ-A2PN        TCGA-DJ-A2PO        TCGA-DJ-A2PP 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A2PQ        TCGA-DJ-A2PR        TCGA-DJ-A2PS        TCGA-DJ-A2PU 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A2PV        TCGA-DJ-A2PW        TCGA-DJ-A2PY        TCGA-DJ-A2PZ 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A2Q0        TCGA-DJ-A2Q1        TCGA-DJ-A2Q2        TCGA-DJ-A2Q4 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A2Q5        TCGA-DJ-A2Q6        TCGA-DJ-A2Q7        TCGA-DJ-A2Q8 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A2Q9        TCGA-DJ-A2QA        TCGA-DJ-A2QB        TCGA-DJ-A2QC 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DO-A1JZ        TCGA-DO-A1K0        TCGA-E3-A3DY        TCGA-E3-A3DZ 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-E3-A3E0        TCGA-E3-A3E1        TCGA-E3-A3E3        TCGA-E3-A3E5 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-E8-A2EA        TCGA-E8-A2JQ        TCGA-EL-A3CL        TCGA-EL-A3CM 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3CN        TCGA-EL-A3CO        TCGA-EL-A3CP        TCGA-EL-A3CR 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3CS        TCGA-EL-A3CT        TCGA-EL-A3CU        TCGA-EL-A3CV 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3CW        TCGA-EL-A3CX        TCGA-EL-A3CY        TCGA-EL-A3CZ 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3D0        TCGA-EL-A3D1        TCGA-EL-A3D4        TCGA-EL-A3D5 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3D6        TCGA-EL-A3GO        TCGA-EL-A3GP        TCGA-EL-A3GQ 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3GR        TCGA-EL-A3GS        TCGA-EL-A3GU        TCGA-EL-A3GV 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3GW        TCGA-EL-A3GX        TCGA-EL-A3GY        TCGA-EL-A3GZ 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3H1        TCGA-EL-A3H2        TCGA-EL-A3H3        TCGA-EL-A3H4 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3H5        TCGA-EL-A3H7        TCGA-EL-A3H8        TCGA-EL-A3MW 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3MX        TCGA-EL-A3MY        TCGA-EL-A3MZ        TCGA-EL-A3N2 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3N3        TCGA-EM-A1CT        TCGA-EM-A1CU        TCGA-EM-A1CV 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A1CW        TCGA-EM-A1YA        TCGA-EM-A1YB        TCGA-EM-A1YC 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A1YD        TCGA-EM-A1YE        TCGA-EM-A22I        TCGA-EM-A22J 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A22L        TCGA-EM-A22M        TCGA-EM-A22O        TCGA-EM-A22Q 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A2CJ        TCGA-EM-A2CK        TCGA-EM-A2CL        TCGA-EM-A2CO 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A2CP        TCGA-EM-A2CQ        TCGA-EM-A2CR        TCGA-EM-A2CS 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A2CU        TCGA-EM-A2OV        TCGA-EM-A2OY        TCGA-EM-A2P1 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A3AI        TCGA-EM-A3AJ        TCGA-EM-A3AL        TCGA-EM-A3AN 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A3AO        TCGA-EM-A3AP        TCGA-EM-A3FJ        TCGA-EM-A3FL 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A3FN        TCGA-EM-A3FO        TCGA-EM-A3FP        TCGA-ET-A25G 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A25O        TCGA-ET-A2MY        TCGA-ET-A2MZ        TCGA-ET-A2N0 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A2N1        TCGA-ET-A2N4        TCGA-ET-A2N5        TCGA-ET-A39I 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A39J        TCGA-ET-A39L        TCGA-ET-A39M        TCGA-ET-A39N 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A39P        TCGA-ET-A39R        TCGA-ET-A39T        TCGA-ET-A3BN 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A3BP        TCGA-ET-A3BS        TCGA-ET-A3BT        TCGA-ET-A3BU 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A3BV        TCGA-ET-A3BW        TCGA-ET-A3BX        TCGA-ET-A3DO 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A3DP        TCGA-ET-A3DS        TCGA-ET-A3DT        TCGA-ET-A3DV 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A3DW        TCGA-FE-A22Z        TCGA-FE-A230        TCGA-FE-A231 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-FE-A232        TCGA-FE-A233        TCGA-FE-A234        TCGA-FE-A235 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-FE-A236        TCGA-FE-A237        TCGA-FE-A23A        TCGA-FY-A2QD 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-FY-A3BL        TCGA-FY-A3ON        TCGA-GE-A2C6        TCGA-H2-A2K9 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IM-A3EB        TCGA-IM-A3ED        TCGA-J8-A3NZ        TCGA-J8-A3O0 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-J8-A3O1 
"TSC22D1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TSC22D1 MUTATED        0      0      1      1      0      0      0
  TSC22D1 WILD-TYPE     46     27     30     25     49     27      9
D20V4, multiclass
[1] "Remove cluster labels:" "TSC22D1 MUTATED"       
clus
  TSC22D1 MUTATED TSC22D1 WILD-TYPE 
                2               213 
       TCGA-BJ-A0YZ        TCGA-BJ-A0Z0        TCGA-BJ-A0Z2        TCGA-BJ-A0Z3 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-BJ-A0Z9        TCGA-BJ-A0ZA        TCGA-BJ-A0ZB        TCGA-BJ-A0ZC 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-BJ-A0ZE        TCGA-BJ-A0ZG        TCGA-BJ-A0ZJ        TCGA-BJ-A18Y 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-BJ-A18Z        TCGA-BJ-A191        TCGA-BJ-A192        TCGA-BJ-A28R 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-BJ-A28S        TCGA-BJ-A28T        TCGA-BJ-A28V        TCGA-BJ-A28Z 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-BJ-A290        TCGA-BJ-A2N7        TCGA-BJ-A2N9        TCGA-BJ-A2NA 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-BJ-A2P4        TCGA-BJ-A3EZ        TCGA-BJ-A3F0        TCGA-CE-A13K 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-CE-A27D        TCGA-CE-A3MD        TCGA-CE-A3ME        TCGA-DE-A0Y2 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DE-A2OL        TCGA-DE-A3KN        TCGA-DJ-A13M        TCGA-DJ-A13O 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A13R        TCGA-DJ-A13S        TCGA-DJ-A13V        TCGA-DJ-A13W 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A13X        TCGA-DJ-A1QD        TCGA-DJ-A1QE        TCGA-DJ-A1QF 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A1QG        TCGA-DJ-A1QI        TCGA-DJ-A1QL        TCGA-DJ-A1QM 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A1QN        TCGA-DJ-A2PN        TCGA-DJ-A2PO        TCGA-DJ-A2PP 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A2PQ        TCGA-DJ-A2PR        TCGA-DJ-A2PS        TCGA-DJ-A2PU 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A2PV        TCGA-DJ-A2PW        TCGA-DJ-A2PY        TCGA-DJ-A2PZ 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A2Q0        TCGA-DJ-A2Q1        TCGA-DJ-A2Q2        TCGA-DJ-A2Q4 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A2Q5        TCGA-DJ-A2Q6        TCGA-DJ-A2Q7        TCGA-DJ-A2Q8 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DJ-A2Q9        TCGA-DJ-A2QA        TCGA-DJ-A2QB        TCGA-DJ-A2QC 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-DO-A1JZ        TCGA-DO-A1K0        TCGA-E3-A3DY        TCGA-E3-A3DZ 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-E3-A3E0        TCGA-E3-A3E1        TCGA-E3-A3E3        TCGA-E3-A3E5 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-E8-A2EA        TCGA-E8-A2JQ        TCGA-EL-A3CL        TCGA-EL-A3CM 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3CN        TCGA-EL-A3CO        TCGA-EL-A3CP        TCGA-EL-A3CR 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3CS        TCGA-EL-A3CT        TCGA-EL-A3CU        TCGA-EL-A3CV 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3CW        TCGA-EL-A3CX        TCGA-EL-A3CY        TCGA-EL-A3CZ 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3D0        TCGA-EL-A3D1        TCGA-EL-A3D4        TCGA-EL-A3D5 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3D6        TCGA-EL-A3GO        TCGA-EL-A3GP        TCGA-EL-A3GQ 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3GR        TCGA-EL-A3GS        TCGA-EL-A3GU        TCGA-EL-A3GV 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3GW        TCGA-EL-A3GX        TCGA-EL-A3GY        TCGA-EL-A3GZ 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3H1        TCGA-EL-A3H2        TCGA-EL-A3H3        TCGA-EL-A3H4 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3H5        TCGA-EL-A3H7        TCGA-EL-A3H8        TCGA-EL-A3MW 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3MX        TCGA-EL-A3MY        TCGA-EL-A3MZ        TCGA-EL-A3N2 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EL-A3N3        TCGA-EM-A1CT        TCGA-EM-A1CU        TCGA-EM-A1CV 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A1CW        TCGA-EM-A1YA        TCGA-EM-A1YB        TCGA-EM-A1YC 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A1YD        TCGA-EM-A1YE        TCGA-EM-A22I        TCGA-EM-A22J 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A22L        TCGA-EM-A22M        TCGA-EM-A22O        TCGA-EM-A22Q 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A2CJ        TCGA-EM-A2CK        TCGA-EM-A2CL        TCGA-EM-A2CO 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A2CP        TCGA-EM-A2CQ        TCGA-EM-A2CR        TCGA-EM-A2CS 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A2CU        TCGA-EM-A2OV        TCGA-EM-A2OY        TCGA-EM-A2P1 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A3AI        TCGA-EM-A3AJ        TCGA-EM-A3AL        TCGA-EM-A3AN 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A3AO        TCGA-EM-A3AP        TCGA-EM-A3FJ        TCGA-EM-A3FL 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-EM-A3FN        TCGA-EM-A3FO        TCGA-EM-A3FP        TCGA-ET-A25G 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A25O        TCGA-ET-A2MY        TCGA-ET-A2MZ        TCGA-ET-A2N0 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A2N1        TCGA-ET-A2N4        TCGA-ET-A2N5        TCGA-ET-A39I 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A39J        TCGA-ET-A39L        TCGA-ET-A39M        TCGA-ET-A39N 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A39P        TCGA-ET-A39R        TCGA-ET-A39T        TCGA-ET-A3BN 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A3BP        TCGA-ET-A3BS        TCGA-ET-A3BT        TCGA-ET-A3BU 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A3BV        TCGA-ET-A3BW        TCGA-ET-A3BX        TCGA-ET-A3DO 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A3DP        TCGA-ET-A3DS        TCGA-ET-A3DT        TCGA-ET-A3DV 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-ET-A3DW        TCGA-FE-A22Z        TCGA-FE-A230        TCGA-FE-A231 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-FE-A232        TCGA-FE-A233        TCGA-FE-A234        TCGA-FE-A235 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-FE-A236        TCGA-FE-A237        TCGA-FE-A23A        TCGA-FY-A2QD 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-FY-A3BL        TCGA-FY-A3ON        TCGA-GE-A2C6        TCGA-H2-A2K9 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-IM-A3EB        TCGA-IM-A3ED        TCGA-J8-A3NZ        TCGA-J8-A3O0 
"TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" "TSC22D1 WILD-TYPE" 
       TCGA-J8-A3O1 
"TSC22D1 WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC22D1 MUTATED        1      2      0      1
  TSC22D1 WILD-TYPE    153    162     58    113
D20V5, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               1               153
  CLUS_2               2               162
  CLUS_3               0                58
  CLUS_4               1               113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TSC22D1 MUTATED        0      2      0      1      1
  TSC22D1 WILD-TYPE    103    129     85     94     75
D20V6, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               0               103
  CLUS_2               2               129
  CLUS_3               0                85
  CLUS_4               1                94
  CLUS_5               1                75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC22D1 MUTATED        1      2      1      0
  TSC22D1 WILD-TYPE    162    141    118     66
D20V7, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               1               162
  CLUS_2               2               141
  CLUS_3               1               118
  CLUS_4               0                66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSC22D1 MUTATED        1      2      1
  TSC22D1 WILD-TYPE    175    123    189
D20V8, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               1               175
  CLUS_2               2               123
  CLUS_3               1               189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TSC22D1 MUTATED        1      1      1      0
  TSC22D1 WILD-TYPE    128    121    105    105
D20V9, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               1               128
  CLUS_2               1               121
  CLUS_3               1               105
  CLUS_4               0               105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TSC22D1 MUTATED        1      1      1
  TSC22D1 WILD-TYPE    159    117    183
D20V10, multiclass
        clus
vv       TSC22D1 MUTATED TSC22D1 WILD-TYPE
  CLUS_1               1               159
  CLUS_2               1               117
  CLUS_3               1               183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(21) Variable = AKT1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKT1 MUTATED        4      0      1
  AKT1 WILD-TYPE    127    137    219
D21V1, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            4            127
  CLUS_2            0            137
  CLUS_3            1            219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKT1 MUTATED        0      0      0      1      4
  AKT1 WILD-TYPE     46    144     84     39    174
D21V2, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            0             46
  CLUS_2            0            144
  CLUS_3            0             84
  CLUS_4            1             39
  CLUS_5            4            174
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        0      0      0      0
  AKT1 WILD-TYPE     63     61     40     51
D21V3, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  AKT1 MUTATED        0      0      0      0      0      0      0
  AKT1 WILD-TYPE     46     27     31     26     49     27      9
D21V4, multiclass
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        4      0      0      1
  AKT1 WILD-TYPE    150    164     58    113
D21V5, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            4            150
  CLUS_2            0            164
  CLUS_3            0             58
  CLUS_4            1            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AKT1 MUTATED        1      0      0      0      4
  AKT1 WILD-TYPE    102    131     85     95     72
D21V6, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            1            102
  CLUS_2            0            131
  CLUS_3            0             85
  CLUS_4            0             95
  CLUS_5            4             72
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        2      0      3      0
  AKT1 WILD-TYPE    161    143    116     66
D21V7, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            2            161
  CLUS_2            0            143
  CLUS_3            3            116
  CLUS_4            0             66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKT1 MUTATED        2      0      3
  AKT1 WILD-TYPE    174    125    187
D21V8, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            2            174
  CLUS_2            0            125
  CLUS_3            3            187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AKT1 MUTATED        2      0      1      2
  AKT1 WILD-TYPE    127    122    105    103
D21V9, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            2            127
  CLUS_2            0            122
  CLUS_3            1            105
  CLUS_4            2            103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  AKT1 MUTATED        2      0      3
  AKT1 WILD-TYPE    158    118    181
D21V10, multiclass
        clus
vv       AKT1 MUTATED AKT1 WILD-TYPE
  CLUS_1            2            158
  CLUS_2            0            118
  CLUS_3            3            181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(22) Variable = ZNF878 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF878 MUTATED        0      1      1
  ZNF878 WILD-TYPE    131    136    219
D22V1, multiclass
[1] "Remove cluster labels:" "ZNF878 MUTATED"        
clus
  ZNF878 MUTATED ZNF878 WILD-TYPE 
               2              486 
      TCGA-4C-A93U       TCGA-BJ-A0YZ       TCGA-BJ-A0Z0       TCGA-BJ-A0Z2 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A0Z3       TCGA-BJ-A0Z9       TCGA-BJ-A0ZA       TCGA-BJ-A0ZB 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A0ZC       TCGA-BJ-A0ZE       TCGA-BJ-A0ZG       TCGA-BJ-A0ZH 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A0ZJ       TCGA-BJ-A18Y       TCGA-BJ-A18Z       TCGA-BJ-A191 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A192       TCGA-BJ-A28R       TCGA-BJ-A28S       TCGA-BJ-A28T 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A28V       TCGA-BJ-A28X       TCGA-BJ-A28Z       TCGA-BJ-A290 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A2N7       TCGA-BJ-A2N8       TCGA-BJ-A2N9       TCGA-BJ-A2NA 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A2P4       TCGA-BJ-A3EZ       TCGA-BJ-A3F0       TCGA-BJ-A3PR 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A3PT       TCGA-BJ-A3PU       TCGA-BJ-A45D       TCGA-BJ-A45E 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A45F       TCGA-BJ-A45G       TCGA-BJ-A45H       TCGA-BJ-A45I 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A45J       TCGA-BJ-A45K       TCGA-BJ-A4O8       TCGA-BJ-A4O9 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-CE-A13K       TCGA-CE-A27D       TCGA-CE-A3MD       TCGA-CE-A3ME 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-CE-A481       TCGA-CE-A482       TCGA-CE-A483       TCGA-CE-A484 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-CE-A485       TCGA-DE-A0XZ       TCGA-DE-A0Y2       TCGA-DE-A0Y3 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DE-A2OL       TCGA-DE-A3KN       TCGA-DE-A4M8       TCGA-DE-A4M9 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DE-A4MA       TCGA-DE-A4MB       TCGA-DE-A4MC       TCGA-DE-A4MD 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DE-A69J       TCGA-DE-A69K       TCGA-DE-A7U5       TCGA-DJ-A13L 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A13M       TCGA-DJ-A13O       TCGA-DJ-A13P       TCGA-DJ-A13R 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A13S       TCGA-DJ-A13T       TCGA-DJ-A13U       TCGA-DJ-A13V 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A13W       TCGA-DJ-A13X       TCGA-DJ-A1QD       TCGA-DJ-A1QE 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A1QF       TCGA-DJ-A1QG       TCGA-DJ-A1QH       TCGA-DJ-A1QI 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A1QL       TCGA-DJ-A1QM       TCGA-DJ-A1QN       TCGA-DJ-A1QO 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A1QQ       TCGA-DJ-A2PN       TCGA-DJ-A2PO       TCGA-DJ-A2PP 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2PQ       TCGA-DJ-A2PR       TCGA-DJ-A2PS       TCGA-DJ-A2PT 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2PU       TCGA-DJ-A2PV       TCGA-DJ-A2PW       TCGA-DJ-A2PX 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2PY       TCGA-DJ-A2PZ       TCGA-DJ-A2Q0       TCGA-DJ-A2Q1 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2Q2       TCGA-DJ-A2Q3       TCGA-DJ-A2Q4       TCGA-DJ-A2Q5 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2Q6       TCGA-DJ-A2Q7       TCGA-DJ-A2Q8       TCGA-DJ-A2Q9 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2QA       TCGA-DJ-A2QB       TCGA-DJ-A2QC       TCGA-DJ-A3UK 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A3UM       TCGA-DJ-A3UN       TCGA-DJ-A3UO       TCGA-DJ-A3UP 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A3UQ       TCGA-DJ-A3UR       TCGA-DJ-A3US       TCGA-DJ-A3UT 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A3UU       TCGA-DJ-A3UW       TCGA-DJ-A3UX       TCGA-DJ-A3UY 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A3UZ       TCGA-DJ-A3V0       TCGA-DJ-A3V2       TCGA-DJ-A3V3 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A3V4       TCGA-DJ-A3V5       TCGA-DJ-A3V7       TCGA-DJ-A3V8 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A3V9       TCGA-DJ-A3VA       TCGA-DJ-A3VB       TCGA-DJ-A3VD 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A3VE       TCGA-DJ-A3VF       TCGA-DJ-A3VG       TCGA-DJ-A3VI 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A3VJ       TCGA-DJ-A3VK       TCGA-DJ-A3VL       TCGA-DJ-A3VM 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A4UL       TCGA-DJ-A4UP       TCGA-DJ-A4UQ       TCGA-DJ-A4UR 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A4UT       TCGA-DJ-A4UW       TCGA-DJ-A4V0       TCGA-DJ-A4V2 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A4V4       TCGA-DJ-A4V5       TCGA-DO-A1JZ       TCGA-DO-A1K0 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DO-A2HM       TCGA-E3-A3DY       TCGA-E3-A3DZ       TCGA-E3-A3E0 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-E3-A3E1       TCGA-E3-A3E2       TCGA-E3-A3E3       TCGA-E3-A3E5 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-E8-A242       TCGA-E8-A2EA       TCGA-E8-A3X7       TCGA-E8-A413 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-E8-A414       TCGA-E8-A415       TCGA-E8-A416       TCGA-E8-A417 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-E8-A418       TCGA-E8-A419       TCGA-E8-A432       TCGA-E8-A433 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-E8-A434       TCGA-E8-A436       TCGA-E8-A437       TCGA-E8-A438 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-E8-A44K       TCGA-E8-A44M       TCGA-EL-A3CL       TCGA-EL-A3CM 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3CN       TCGA-EL-A3CO       TCGA-EL-A3CP       TCGA-EL-A3CR 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3CS       TCGA-EL-A3CT       TCGA-EL-A3CU       TCGA-EL-A3CV 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3CW       TCGA-EL-A3CX       TCGA-EL-A3CY       TCGA-EL-A3CZ 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3D0       TCGA-EL-A3D1       TCGA-EL-A3D4       TCGA-EL-A3D5 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3D6       TCGA-EL-A3GO       TCGA-EL-A3GP       TCGA-EL-A3GQ 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3GR       TCGA-EL-A3GS       TCGA-EL-A3GU       TCGA-EL-A3GV 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3GW       TCGA-EL-A3GX       TCGA-EL-A3GY       TCGA-EL-A3GZ 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3H1       TCGA-EL-A3H2       TCGA-EL-A3H4       TCGA-EL-A3H5 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3H7       TCGA-EL-A3H8       TCGA-EL-A3MW       TCGA-EL-A3MX 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3MY       TCGA-EL-A3MZ       TCGA-EL-A3N2       TCGA-EL-A3N3 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3T1       TCGA-EL-A3T2       TCGA-EL-A3T3       TCGA-EL-A3T6 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3T7       TCGA-EL-A3T8       TCGA-EL-A3T9       TCGA-EL-A3TA 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3TB       TCGA-EL-A3ZG       TCGA-EL-A3ZH       TCGA-EL-A3ZK 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3ZL       TCGA-EL-A3ZM       TCGA-EL-A3ZN       TCGA-EL-A3ZO 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3ZP       TCGA-EL-A3ZQ       TCGA-EL-A3ZR       TCGA-EL-A3ZS 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3ZT       TCGA-EL-A4JV       TCGA-EL-A4JW       TCGA-EL-A4JX 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A4JZ       TCGA-EL-A4K0       TCGA-EL-A4K1       TCGA-EL-A4K2 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A4K4       TCGA-EL-A4K6       TCGA-EL-A4K7       TCGA-EL-A4K9 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A4KD       TCGA-EL-A4KG       TCGA-EL-A4KH       TCGA-EL-A4KI 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A1CS       TCGA-EM-A1CT       TCGA-EM-A1CU       TCGA-EM-A1CV 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A1CW       TCGA-EM-A1YA       TCGA-EM-A1YB       TCGA-EM-A1YC 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A1YD       TCGA-EM-A1YE       TCGA-EM-A22I       TCGA-EM-A22J 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A22K       TCGA-EM-A22L       TCGA-EM-A22M       TCGA-EM-A22N 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A22O       TCGA-EM-A22P       TCGA-EM-A22Q       TCGA-EM-A2CJ 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A2CK       TCGA-EM-A2CL       TCGA-EM-A2CN       TCGA-EM-A2CO 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A2CP       TCGA-EM-A2CQ       TCGA-EM-A2CT       TCGA-EM-A2CU 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A2OV       TCGA-EM-A2OW       TCGA-EM-A2OX       TCGA-EM-A2OY 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A2OZ       TCGA-EM-A2P0       TCGA-EM-A2P1       TCGA-EM-A2P2 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A2P3       TCGA-EM-A3AI       TCGA-EM-A3AJ       TCGA-EM-A3AK 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A3AL       TCGA-EM-A3AN       TCGA-EM-A3AO       TCGA-EM-A3AP 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A3AQ       TCGA-EM-A3AR       TCGA-EM-A3FJ       TCGA-EM-A3FK 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A3FL       TCGA-EM-A3FM       TCGA-EM-A3FN       TCGA-EM-A3FO 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A3FP       TCGA-EM-A3FQ       TCGA-EM-A3FR       TCGA-EM-A3O3 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A3O6       TCGA-EM-A3O7       TCGA-EM-A3O8       TCGA-EM-A3O9 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A3OA       TCGA-EM-A3OB       TCGA-EM-A3ST       TCGA-EM-A3SU 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A3SX       TCGA-EM-A3SY       TCGA-EM-A3SZ       TCGA-EM-A4FF 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A4FH       TCGA-EM-A4FK       TCGA-EM-A4FM       TCGA-EM-A4FN 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A4FO       TCGA-EM-A4FQ       TCGA-EM-A4FR       TCGA-EM-A4FU 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A4FV       TCGA-EM-A4G1       TCGA-ET-A25G       TCGA-ET-A25I 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A25J       TCGA-ET-A25K       TCGA-ET-A25O       TCGA-ET-A25R 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A2MX       TCGA-ET-A2MY       TCGA-ET-A2MZ       TCGA-ET-A2N0 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A2N1       TCGA-ET-A2N3       TCGA-ET-A2N4       TCGA-ET-A2N5 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A39I       TCGA-ET-A39J       TCGA-ET-A39K       TCGA-ET-A39L 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A39M       TCGA-ET-A39N       TCGA-ET-A39O       TCGA-ET-A39P 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A39R       TCGA-ET-A39S       TCGA-ET-A39T       TCGA-ET-A3BN 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A3BO       TCGA-ET-A3BP       TCGA-ET-A3BQ       TCGA-ET-A3BS 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A3BT       TCGA-ET-A3BU       TCGA-ET-A3BV       TCGA-ET-A3BW 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A3BX       TCGA-ET-A3DO       TCGA-ET-A3DP       TCGA-ET-A3DQ 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A3DR       TCGA-ET-A3DS       TCGA-ET-A3DT       TCGA-ET-A3DU 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A3DV       TCGA-ET-A3DW       TCGA-ET-A40P       TCGA-ET-A40Q 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A40R       TCGA-ET-A40S       TCGA-ET-A40T       TCGA-ET-A4KN 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A4KQ       TCGA-FE-A22Z       TCGA-FE-A230       TCGA-FE-A231 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FE-A232       TCGA-FE-A233       TCGA-FE-A234       TCGA-FE-A235 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FE-A236       TCGA-FE-A237       TCGA-FE-A23A       TCGA-FE-A3PA 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FE-A3PB       TCGA-FE-A3PC       TCGA-FE-A3PD       TCGA-FK-A3S3 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FK-A3SB       TCGA-FK-A3SD       TCGA-FK-A3SE       TCGA-FK-A3SG 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FK-A3SH       TCGA-FK-A4UB       TCGA-FY-A2QD       TCGA-FY-A3BL 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FY-A3I4       TCGA-FY-A3I5       TCGA-FY-A3NM       TCGA-FY-A3NN 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FY-A3ON       TCGA-FY-A3R6       TCGA-FY-A3R7       TCGA-FY-A3R8 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FY-A3R9       TCGA-FY-A3RA       TCGA-FY-A3TY       TCGA-FY-A3W9 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FY-A3WA       TCGA-FY-A3YR       TCGA-FY-A40K       TCGA-FY-A40L 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FY-A40M       TCGA-FY-A40N       TCGA-FY-A4B0       TCGA-FY-A4B3 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FY-A4B4       TCGA-FY-A76V       TCGA-GE-A2C6       TCGA-H2-A26U 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-H2-A2K9       TCGA-H2-A3RH       TCGA-H2-A3RI       TCGA-H2-A421 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-H2-A422       TCGA-IM-A3EB       TCGA-IM-A3ED       TCGA-IM-A3U2 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IM-A3U3       TCGA-IM-A41Y       TCGA-IM-A41Z       TCGA-IM-A420 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-IM-A4EB       TCGA-J8-A3NZ       TCGA-J8-A3O0       TCGA-J8-A3O1 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-J8-A3O2       TCGA-J8-A3YD       TCGA-J8-A3YE       TCGA-J8-A3YF 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-J8-A3YG       TCGA-J8-A3YH       TCGA-J8-A42S       TCGA-J8-A4HW 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-J8-A4HY       TCGA-KS-A41F       TCGA-KS-A41I       TCGA-KS-A41J 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-KS-A41L       TCGA-KS-A4I1       TCGA-KS-A4I3       TCGA-KS-A4I5 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-KS-A4I7       TCGA-KS-A4I9       TCGA-KS-A4IB       TCGA-KS-A4IC 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-KS-A4ID       TCGA-L6-A4EP       TCGA-L6-A4EQ       TCGA-L6-A4ET 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-L6-A4EU       TCGA-MK-A4N6       TCGA-MK-A4N7       TCGA-MK-A4N9 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-MK-A84Z       TCGA-QD-A8IV 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF878 MUTATED        0      2      1      0      0
  ZNF878 WILD-TYPE     46    142     83     40    178
D22V2, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              2              142
  CLUS_3              1               83
  CLUS_4              0               40
  CLUS_5              0              178
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF878 MUTATED        0      0      1      0
  ZNF878 WILD-TYPE     63     61     39     51
D22V3, multiclass
[1] "Remove cluster labels:" "ZNF878 MUTATED"        
clus
  ZNF878 MUTATED ZNF878 WILD-TYPE 
               1              214 
      TCGA-BJ-A0YZ       TCGA-BJ-A0Z0       TCGA-BJ-A0Z2       TCGA-BJ-A0Z3 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A0Z9       TCGA-BJ-A0ZA       TCGA-BJ-A0ZB       TCGA-BJ-A0ZC 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A0ZE       TCGA-BJ-A0ZG       TCGA-BJ-A0ZJ       TCGA-BJ-A18Y 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A18Z       TCGA-BJ-A191       TCGA-BJ-A192       TCGA-BJ-A28R 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A28S       TCGA-BJ-A28T       TCGA-BJ-A28V       TCGA-BJ-A28Z 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A290       TCGA-BJ-A2N7       TCGA-BJ-A2N9       TCGA-BJ-A2NA 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A2P4       TCGA-BJ-A3EZ       TCGA-BJ-A3F0       TCGA-CE-A13K 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-CE-A27D       TCGA-CE-A3MD       TCGA-CE-A3ME       TCGA-DE-A0Y2 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DE-A2OL       TCGA-DE-A3KN       TCGA-DJ-A13M       TCGA-DJ-A13O 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A13R       TCGA-DJ-A13S       TCGA-DJ-A13V       TCGA-DJ-A13W 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A13X       TCGA-DJ-A1QD       TCGA-DJ-A1QE       TCGA-DJ-A1QF 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A1QG       TCGA-DJ-A1QI       TCGA-DJ-A1QL       TCGA-DJ-A1QM 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A1QN       TCGA-DJ-A1QO       TCGA-DJ-A2PN       TCGA-DJ-A2PO 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2PP       TCGA-DJ-A2PQ       TCGA-DJ-A2PR       TCGA-DJ-A2PS 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2PU       TCGA-DJ-A2PV       TCGA-DJ-A2PW       TCGA-DJ-A2PY 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2PZ       TCGA-DJ-A2Q0       TCGA-DJ-A2Q1       TCGA-DJ-A2Q2 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2Q4       TCGA-DJ-A2Q5       TCGA-DJ-A2Q6       TCGA-DJ-A2Q7 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2Q8       TCGA-DJ-A2Q9       TCGA-DJ-A2QA       TCGA-DJ-A2QB 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2QC       TCGA-DO-A1JZ       TCGA-DO-A1K0       TCGA-E3-A3DY 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-E3-A3DZ       TCGA-E3-A3E0       TCGA-E3-A3E1       TCGA-E3-A3E3 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-E3-A3E5       TCGA-E8-A2EA       TCGA-E8-A2JQ       TCGA-EL-A3CL 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3CM       TCGA-EL-A3CN       TCGA-EL-A3CO       TCGA-EL-A3CP 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3CR       TCGA-EL-A3CS       TCGA-EL-A3CT       TCGA-EL-A3CU 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3CV       TCGA-EL-A3CW       TCGA-EL-A3CX       TCGA-EL-A3CY 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3CZ       TCGA-EL-A3D0       TCGA-EL-A3D1       TCGA-EL-A3D4 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3D5       TCGA-EL-A3D6       TCGA-EL-A3GO       TCGA-EL-A3GP 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3GQ       TCGA-EL-A3GR       TCGA-EL-A3GS       TCGA-EL-A3GU 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3GV       TCGA-EL-A3GW       TCGA-EL-A3GX       TCGA-EL-A3GY 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3GZ       TCGA-EL-A3H1       TCGA-EL-A3H2       TCGA-EL-A3H4 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3H5       TCGA-EL-A3H7       TCGA-EL-A3H8       TCGA-EL-A3MW 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3MX       TCGA-EL-A3MY       TCGA-EL-A3MZ       TCGA-EL-A3N2 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3N3       TCGA-EM-A1CT       TCGA-EM-A1CU       TCGA-EM-A1CV 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A1CW       TCGA-EM-A1YA       TCGA-EM-A1YB       TCGA-EM-A1YC 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A1YD       TCGA-EM-A1YE       TCGA-EM-A22I       TCGA-EM-A22J 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A22L       TCGA-EM-A22M       TCGA-EM-A22O       TCGA-EM-A22Q 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A2CJ       TCGA-EM-A2CK       TCGA-EM-A2CL       TCGA-EM-A2CN 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A2CO       TCGA-EM-A2CP       TCGA-EM-A2CQ       TCGA-EM-A2CR 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A2CS       TCGA-EM-A2CU       TCGA-EM-A2OV       TCGA-EM-A2OY 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A2P1       TCGA-EM-A3AI       TCGA-EM-A3AJ       TCGA-EM-A3AL 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A3AN       TCGA-EM-A3AO       TCGA-EM-A3AP       TCGA-EM-A3FJ 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A3FL       TCGA-EM-A3FN       TCGA-EM-A3FO       TCGA-EM-A3FP 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A25G       TCGA-ET-A25O       TCGA-ET-A2MY       TCGA-ET-A2MZ 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A2N0       TCGA-ET-A2N1       TCGA-ET-A2N4       TCGA-ET-A2N5 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A39I       TCGA-ET-A39J       TCGA-ET-A39L       TCGA-ET-A39M 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A39N       TCGA-ET-A39P       TCGA-ET-A39R       TCGA-ET-A39T 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A3BN       TCGA-ET-A3BP       TCGA-ET-A3BS       TCGA-ET-A3BT 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A3BU       TCGA-ET-A3BV       TCGA-ET-A3BW       TCGA-ET-A3BX 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A3DO       TCGA-ET-A3DP       TCGA-ET-A3DS       TCGA-ET-A3DT 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A3DV       TCGA-ET-A3DW       TCGA-FE-A22Z       TCGA-FE-A230 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FE-A231       TCGA-FE-A232       TCGA-FE-A233       TCGA-FE-A234 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FE-A235       TCGA-FE-A236       TCGA-FE-A237       TCGA-FE-A23A 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FY-A2QD       TCGA-FY-A3BL       TCGA-FY-A3ON       TCGA-GE-A2C6 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-H2-A2K9       TCGA-IM-A3EB       TCGA-IM-A3ED       TCGA-J8-A3NZ 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-J8-A3O0       TCGA-J8-A3O1 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZNF878 MUTATED        0      0      0      1      0      0      0
  ZNF878 WILD-TYPE     46     27     31     25     49     27      9
D22V4, multiclass
[1] "Remove cluster labels:" "ZNF878 MUTATED"        
clus
  ZNF878 MUTATED ZNF878 WILD-TYPE 
               1              214 
      TCGA-BJ-A0YZ       TCGA-BJ-A0Z0       TCGA-BJ-A0Z2       TCGA-BJ-A0Z3 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A0Z9       TCGA-BJ-A0ZA       TCGA-BJ-A0ZB       TCGA-BJ-A0ZC 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A0ZE       TCGA-BJ-A0ZG       TCGA-BJ-A0ZJ       TCGA-BJ-A18Y 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A18Z       TCGA-BJ-A191       TCGA-BJ-A192       TCGA-BJ-A28R 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A28S       TCGA-BJ-A28T       TCGA-BJ-A28V       TCGA-BJ-A28Z 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A290       TCGA-BJ-A2N7       TCGA-BJ-A2N9       TCGA-BJ-A2NA 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-BJ-A2P4       TCGA-BJ-A3EZ       TCGA-BJ-A3F0       TCGA-CE-A13K 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-CE-A27D       TCGA-CE-A3MD       TCGA-CE-A3ME       TCGA-DE-A0Y2 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DE-A2OL       TCGA-DE-A3KN       TCGA-DJ-A13M       TCGA-DJ-A13O 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A13R       TCGA-DJ-A13S       TCGA-DJ-A13V       TCGA-DJ-A13W 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A13X       TCGA-DJ-A1QD       TCGA-DJ-A1QE       TCGA-DJ-A1QF 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A1QG       TCGA-DJ-A1QI       TCGA-DJ-A1QL       TCGA-DJ-A1QM 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A1QN       TCGA-DJ-A1QO       TCGA-DJ-A2PN       TCGA-DJ-A2PO 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2PP       TCGA-DJ-A2PQ       TCGA-DJ-A2PR       TCGA-DJ-A2PS 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2PU       TCGA-DJ-A2PV       TCGA-DJ-A2PW       TCGA-DJ-A2PY 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2PZ       TCGA-DJ-A2Q0       TCGA-DJ-A2Q1       TCGA-DJ-A2Q2 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2Q4       TCGA-DJ-A2Q5       TCGA-DJ-A2Q6       TCGA-DJ-A2Q7 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2Q8       TCGA-DJ-A2Q9       TCGA-DJ-A2QA       TCGA-DJ-A2QB 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-DJ-A2QC       TCGA-DO-A1JZ       TCGA-DO-A1K0       TCGA-E3-A3DY 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-E3-A3DZ       TCGA-E3-A3E0       TCGA-E3-A3E1       TCGA-E3-A3E3 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-E3-A3E5       TCGA-E8-A2EA       TCGA-E8-A2JQ       TCGA-EL-A3CL 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3CM       TCGA-EL-A3CN       TCGA-EL-A3CO       TCGA-EL-A3CP 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3CR       TCGA-EL-A3CS       TCGA-EL-A3CT       TCGA-EL-A3CU 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3CV       TCGA-EL-A3CW       TCGA-EL-A3CX       TCGA-EL-A3CY 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3CZ       TCGA-EL-A3D0       TCGA-EL-A3D1       TCGA-EL-A3D4 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3D5       TCGA-EL-A3D6       TCGA-EL-A3GO       TCGA-EL-A3GP 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3GQ       TCGA-EL-A3GR       TCGA-EL-A3GS       TCGA-EL-A3GU 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3GV       TCGA-EL-A3GW       TCGA-EL-A3GX       TCGA-EL-A3GY 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3GZ       TCGA-EL-A3H1       TCGA-EL-A3H2       TCGA-EL-A3H4 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3H5       TCGA-EL-A3H7       TCGA-EL-A3H8       TCGA-EL-A3MW 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3MX       TCGA-EL-A3MY       TCGA-EL-A3MZ       TCGA-EL-A3N2 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EL-A3N3       TCGA-EM-A1CT       TCGA-EM-A1CU       TCGA-EM-A1CV 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A1CW       TCGA-EM-A1YA       TCGA-EM-A1YB       TCGA-EM-A1YC 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A1YD       TCGA-EM-A1YE       TCGA-EM-A22I       TCGA-EM-A22J 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A22L       TCGA-EM-A22M       TCGA-EM-A22O       TCGA-EM-A22Q 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A2CJ       TCGA-EM-A2CK       TCGA-EM-A2CL       TCGA-EM-A2CN 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A2CO       TCGA-EM-A2CP       TCGA-EM-A2CQ       TCGA-EM-A2CR 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A2CS       TCGA-EM-A2CU       TCGA-EM-A2OV       TCGA-EM-A2OY 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A2P1       TCGA-EM-A3AI       TCGA-EM-A3AJ       TCGA-EM-A3AL 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A3AN       TCGA-EM-A3AO       TCGA-EM-A3AP       TCGA-EM-A3FJ 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-EM-A3FL       TCGA-EM-A3FN       TCGA-EM-A3FO       TCGA-EM-A3FP 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A25G       TCGA-ET-A25O       TCGA-ET-A2MY       TCGA-ET-A2MZ 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A2N0       TCGA-ET-A2N1       TCGA-ET-A2N4       TCGA-ET-A2N5 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A39I       TCGA-ET-A39J       TCGA-ET-A39L       TCGA-ET-A39M 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A39N       TCGA-ET-A39P       TCGA-ET-A39R       TCGA-ET-A39T 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A3BN       TCGA-ET-A3BP       TCGA-ET-A3BS       TCGA-ET-A3BT 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A3BU       TCGA-ET-A3BV       TCGA-ET-A3BW       TCGA-ET-A3BX 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A3DO       TCGA-ET-A3DP       TCGA-ET-A3DS       TCGA-ET-A3DT 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-ET-A3DV       TCGA-ET-A3DW       TCGA-FE-A22Z       TCGA-FE-A230 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FE-A231       TCGA-FE-A232       TCGA-FE-A233       TCGA-FE-A234 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FE-A235       TCGA-FE-A236       TCGA-FE-A237       TCGA-FE-A23A 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-FY-A2QD       TCGA-FY-A3BL       TCGA-FY-A3ON       TCGA-GE-A2C6 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-H2-A2K9       TCGA-IM-A3EB       TCGA-IM-A3ED       TCGA-J8-A3NZ 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
      TCGA-J8-A3O0       TCGA-J8-A3O1 
"ZNF878 WILD-TYPE" "ZNF878 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF878 MUTATED        0      2      1      0
  ZNF878 WILD-TYPE    154    162     57    114
D22V5, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              0              154
  CLUS_2              2              162
  CLUS_3              1               57
  CLUS_4              0              114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZNF878 MUTATED        0      1      2      0      0
  ZNF878 WILD-TYPE    103    130     83     95     76
D22V6, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              0              103
  CLUS_2              1              130
  CLUS_3              2               83
  CLUS_4              0               95
  CLUS_5              0               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF878 MUTATED        0      2      0      1
  ZNF878 WILD-TYPE    163    141    119     65
D22V7, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              0              163
  CLUS_2              2              141
  CLUS_3              0              119
  CLUS_4              1               65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF878 MUTATED        1      1      1
  ZNF878 WILD-TYPE    175    124    189
D22V8, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              1              175
  CLUS_2              1              124
  CLUS_3              1              189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZNF878 MUTATED        1      1      1      0
  ZNF878 WILD-TYPE    128    121    105    105
D22V9, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              1              128
  CLUS_2              1              121
  CLUS_3              1              105
  CLUS_4              0              105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ZNF878 MUTATED        1      1      1
  ZNF878 WILD-TYPE    159    117    183
D22V10, multiclass
        clus
vv       ZNF878 MUTATED ZNF878 WILD-TYPE
  CLUS_1              1              159
  CLUS_2              1              117
  CLUS_3              1              183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(23) Variable = RBM10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        2      1      1
  RBM10 WILD-TYPE    129    136    219
D23V1, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             2             129
  CLUS_2             1             136
  CLUS_3             1             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM10 MUTATED        0      1      1      1      1
  RBM10 WILD-TYPE     46    143     83     39    177
D23V2, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1             143
  CLUS_3             1              83
  CLUS_4             1              39
  CLUS_5             1             177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        0      0      0      0
  RBM10 WILD-TYPE     63     61     40     51
D23V3, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RBM10 MUTATED        0      0      0      0      0      0      0
  RBM10 WILD-TYPE     46     27     31     26     49     27      9
D23V4, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        1      1      1      1
  RBM10 WILD-TYPE    153    163     57    113
D23V5, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1             153
  CLUS_2             1             163
  CLUS_3             1              57
  CLUS_4             1             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RBM10 MUTATED        1      1      1      1      0
  RBM10 WILD-TYPE    102    130     84     94     76
D23V6, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             1             130
  CLUS_3             1              84
  CLUS_4             1              94
  CLUS_5             0              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        1      1      2      0
  RBM10 WILD-TYPE    162    142    117     66
D23V7, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1             162
  CLUS_2             1             142
  CLUS_3             2             117
  CLUS_4             0              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        1      1      2
  RBM10 WILD-TYPE    175    124    188
D23V8, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1             175
  CLUS_2             1             124
  CLUS_3             2             188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RBM10 MUTATED        1      2      0      1
  RBM10 WILD-TYPE    128    120    106    104
D23V9, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1             128
  CLUS_2             2             120
  CLUS_3             0             106
  CLUS_4             1             104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  RBM10 MUTATED        1      1      2
  RBM10 WILD-TYPE    159    117    182
D23V10, multiclass
        clus
vv       RBM10 MUTATED RBM10 WILD-TYPE
  CLUS_1             1             159
  CLUS_2             1             117
  CLUS_3             2             182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(24) Variable = EP400 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP400 MUTATED        1      1      1
  EP400 WILD-TYPE    130    136    219
D24V1, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             1             130
  CLUS_2             1             136
  CLUS_3             1             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EP400 MUTATED        2      0      0      0      1
  EP400 WILD-TYPE     44    144     84     40    177
D24V2, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             0             144
  CLUS_3             0              84
  CLUS_4             0              40
  CLUS_5             1             177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP400 MUTATED        0      0      0      0
  EP400 WILD-TYPE     63     61     40     51
D24V3, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  EP400 MUTATED        0      0      0      0      0      0      0
  EP400 WILD-TYPE     46     27     31     26     49     27      9
D24V4, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP400 MUTATED        2      0      1      0
  EP400 WILD-TYPE    152    164     57    114
D24V5, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             2             152
  CLUS_2             0             164
  CLUS_3             1              57
  CLUS_4             0             114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  EP400 MUTATED        2      0      1      0      0
  EP400 WILD-TYPE    101    131     84     95     76
D24V6, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             2             101
  CLUS_2             0             131
  CLUS_3             1              84
  CLUS_4             0              95
  CLUS_5             0              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP400 MUTATED        2      0      1      0
  EP400 WILD-TYPE    161    143    118     66
D24V7, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             2             161
  CLUS_2             0             143
  CLUS_3             1             118
  CLUS_4             0              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP400 MUTATED        2      0      1
  EP400 WILD-TYPE    174    125    189
D24V8, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             2             174
  CLUS_2             0             125
  CLUS_3             1             189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EP400 MUTATED        1      0      0      2
  EP400 WILD-TYPE    128    122    106    103
D24V9, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             1             128
  CLUS_2             0             122
  CLUS_3             0             106
  CLUS_4             2             103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  EP400 MUTATED        2      0      1
  EP400 WILD-TYPE    158    118    183
D24V10, multiclass
        clus
vv       EP400 MUTATED EP400 WILD-TYPE
  CLUS_1             2             158
  CLUS_2             0             118
  CLUS_3             1             183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(25) Variable = ABCD1 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCD1 MUTATED        2      1      1
  ABCD1 WILD-TYPE    129    136    219
D25V1, multiclass
        clus
vv       ABCD1 MUTATED ABCD1 WILD-TYPE
  CLUS_1             2             129
  CLUS_2             1             136
  CLUS_3             1             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCD1 MUTATED        0      2      0      0      2
  ABCD1 WILD-TYPE     46    142     84     40    176
D25V2, multiclass
        clus
vv       ABCD1 MUTATED ABCD1 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             2             142
  CLUS_3             0              84
  CLUS_4             0              40
  CLUS_5             2             176
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCD1 MUTATED        1      0      0      1
  ABCD1 WILD-TYPE     62     61     40     50
D25V3, multiclass
[1] "Remove cluster labels:" "ABCD1 MUTATED"         
clus
  ABCD1 MUTATED ABCD1 WILD-TYPE 
              2             213 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y      TCGA-BJ-A18Z 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-BJ-A191      TCGA-BJ-A192      TCGA-BJ-A28R      TCGA-BJ-A28S 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z      TCGA-BJ-A290 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA      TCGA-BJ-A2P4 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K      TCGA-CE-A27D 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-CE-A3MD      TCGA-CE-A3ME      TCGA-DE-A0Y2      TCGA-DE-A2OL 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O      TCGA-DJ-A13R 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W      TCGA-DJ-A13X 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF      TCGA-DJ-A1QG 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM      TCGA-DJ-A1QN 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO      TCGA-DJ-A2PP 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS      TCGA-DJ-A2PV 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A2PW      TCGA-DJ-A2PY      TCGA-DJ-A2PZ      TCGA-DJ-A2Q0 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A2Q1      TCGA-DJ-A2Q2      TCGA-DJ-A2Q4      TCGA-DJ-A2Q5 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A2Q6      TCGA-DJ-A2Q7      TCGA-DJ-A2Q8      TCGA-DJ-A2Q9 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A2QA      TCGA-DJ-A2QB      TCGA-DJ-A2QC      TCGA-DO-A1JZ 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DO-A1K0      TCGA-E3-A3DY      TCGA-E3-A3DZ      TCGA-E3-A3E0 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-E3-A3E1      TCGA-E3-A3E3      TCGA-E3-A3E5      TCGA-E8-A2EA 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-E8-A2JQ      TCGA-EL-A3CL      TCGA-EL-A3CM      TCGA-EL-A3CN 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3CO      TCGA-EL-A3CP      TCGA-EL-A3CR      TCGA-EL-A3CS 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3CT      TCGA-EL-A3CU      TCGA-EL-A3CV      TCGA-EL-A3CW 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3CX      TCGA-EL-A3CY      TCGA-EL-A3CZ      TCGA-EL-A3D0 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3D1      TCGA-EL-A3D4      TCGA-EL-A3D5      TCGA-EL-A3D6 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3GO      TCGA-EL-A3GP      TCGA-EL-A3GQ      TCGA-EL-A3GR 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3GS      TCGA-EL-A3GU      TCGA-EL-A3GV      TCGA-EL-A3GW 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3GX      TCGA-EL-A3GY      TCGA-EL-A3GZ      TCGA-EL-A3H1 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3H2      TCGA-EL-A3H3      TCGA-EL-A3H4      TCGA-EL-A3H5 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3H7      TCGA-EL-A3H8      TCGA-EL-A3MW      TCGA-EL-A3MX 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3MY      TCGA-EL-A3MZ      TCGA-EL-A3N2      TCGA-EL-A3N3 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A1CT      TCGA-EM-A1CU      TCGA-EM-A1CV      TCGA-EM-A1CW 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A1YA      TCGA-EM-A1YB      TCGA-EM-A1YC      TCGA-EM-A1YD 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A1YE      TCGA-EM-A22I      TCGA-EM-A22J      TCGA-EM-A22L 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A22M      TCGA-EM-A22O      TCGA-EM-A22Q      TCGA-EM-A2CJ 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A2CK      TCGA-EM-A2CL      TCGA-EM-A2CN      TCGA-EM-A2CO 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A2CP      TCGA-EM-A2CQ      TCGA-EM-A2CR      TCGA-EM-A2CS 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A2CU      TCGA-EM-A2OV      TCGA-EM-A2OY      TCGA-EM-A2P1 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A3AI      TCGA-EM-A3AJ      TCGA-EM-A3AL      TCGA-EM-A3AN 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A3AO      TCGA-EM-A3AP      TCGA-EM-A3FJ      TCGA-EM-A3FL 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A3FN      TCGA-EM-A3FO      TCGA-EM-A3FP      TCGA-ET-A25G 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A25O      TCGA-ET-A2MY      TCGA-ET-A2MZ      TCGA-ET-A2N0 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A2N1      TCGA-ET-A2N4      TCGA-ET-A2N5      TCGA-ET-A39I 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A39J      TCGA-ET-A39L      TCGA-ET-A39M      TCGA-ET-A39N 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A39P      TCGA-ET-A39R      TCGA-ET-A39T      TCGA-ET-A3BN 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A3BP      TCGA-ET-A3BS      TCGA-ET-A3BT      TCGA-ET-A3BU 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A3BV      TCGA-ET-A3BW      TCGA-ET-A3BX      TCGA-ET-A3DO 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A3DP      TCGA-ET-A3DS      TCGA-ET-A3DT      TCGA-ET-A3DV 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A3DW      TCGA-FE-A22Z      TCGA-FE-A230      TCGA-FE-A231 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-FE-A232      TCGA-FE-A233      TCGA-FE-A234      TCGA-FE-A235 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-FE-A236      TCGA-FE-A237      TCGA-FE-A23A      TCGA-FY-A2QD 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-FY-A3BL      TCGA-FY-A3ON      TCGA-GE-A2C6      TCGA-H2-A2K9 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-IM-A3EB      TCGA-IM-A3ED      TCGA-J8-A3NZ      TCGA-J8-A3O0 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-J8-A3O1 
"ABCD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ABCD1 MUTATED        1      0      0      0      1      0      0
  ABCD1 WILD-TYPE     45     27     31     26     48     27      9
D25V4, multiclass
[1] "Remove cluster labels:" "ABCD1 MUTATED"         
clus
  ABCD1 MUTATED ABCD1 WILD-TYPE 
              2             213 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y      TCGA-BJ-A18Z 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-BJ-A191      TCGA-BJ-A192      TCGA-BJ-A28R      TCGA-BJ-A28S 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z      TCGA-BJ-A290 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA      TCGA-BJ-A2P4 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K      TCGA-CE-A27D 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-CE-A3MD      TCGA-CE-A3ME      TCGA-DE-A0Y2      TCGA-DE-A2OL 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O      TCGA-DJ-A13R 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W      TCGA-DJ-A13X 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF      TCGA-DJ-A1QG 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM      TCGA-DJ-A1QN 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO      TCGA-DJ-A2PP 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS      TCGA-DJ-A2PV 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A2PW      TCGA-DJ-A2PY      TCGA-DJ-A2PZ      TCGA-DJ-A2Q0 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A2Q1      TCGA-DJ-A2Q2      TCGA-DJ-A2Q4      TCGA-DJ-A2Q5 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A2Q6      TCGA-DJ-A2Q7      TCGA-DJ-A2Q8      TCGA-DJ-A2Q9 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DJ-A2QA      TCGA-DJ-A2QB      TCGA-DJ-A2QC      TCGA-DO-A1JZ 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-DO-A1K0      TCGA-E3-A3DY      TCGA-E3-A3DZ      TCGA-E3-A3E0 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-E3-A3E1      TCGA-E3-A3E3      TCGA-E3-A3E5      TCGA-E8-A2EA 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-E8-A2JQ      TCGA-EL-A3CL      TCGA-EL-A3CM      TCGA-EL-A3CN 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3CO      TCGA-EL-A3CP      TCGA-EL-A3CR      TCGA-EL-A3CS 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3CT      TCGA-EL-A3CU      TCGA-EL-A3CV      TCGA-EL-A3CW 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3CX      TCGA-EL-A3CY      TCGA-EL-A3CZ      TCGA-EL-A3D0 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3D1      TCGA-EL-A3D4      TCGA-EL-A3D5      TCGA-EL-A3D6 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3GO      TCGA-EL-A3GP      TCGA-EL-A3GQ      TCGA-EL-A3GR 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3GS      TCGA-EL-A3GU      TCGA-EL-A3GV      TCGA-EL-A3GW 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3GX      TCGA-EL-A3GY      TCGA-EL-A3GZ      TCGA-EL-A3H1 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3H2      TCGA-EL-A3H3      TCGA-EL-A3H4      TCGA-EL-A3H5 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3H7      TCGA-EL-A3H8      TCGA-EL-A3MW      TCGA-EL-A3MX 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EL-A3MY      TCGA-EL-A3MZ      TCGA-EL-A3N2      TCGA-EL-A3N3 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A1CT      TCGA-EM-A1CU      TCGA-EM-A1CV      TCGA-EM-A1CW 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A1YA      TCGA-EM-A1YB      TCGA-EM-A1YC      TCGA-EM-A1YD 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A1YE      TCGA-EM-A22I      TCGA-EM-A22J      TCGA-EM-A22L 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A22M      TCGA-EM-A22O      TCGA-EM-A22Q      TCGA-EM-A2CJ 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A2CK      TCGA-EM-A2CL      TCGA-EM-A2CN      TCGA-EM-A2CO 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A2CP      TCGA-EM-A2CQ      TCGA-EM-A2CR      TCGA-EM-A2CS 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A2CU      TCGA-EM-A2OV      TCGA-EM-A2OY      TCGA-EM-A2P1 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A3AI      TCGA-EM-A3AJ      TCGA-EM-A3AL      TCGA-EM-A3AN 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A3AO      TCGA-EM-A3AP      TCGA-EM-A3FJ      TCGA-EM-A3FL 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-EM-A3FN      TCGA-EM-A3FO      TCGA-EM-A3FP      TCGA-ET-A25G 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A25O      TCGA-ET-A2MY      TCGA-ET-A2MZ      TCGA-ET-A2N0 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A2N1      TCGA-ET-A2N4      TCGA-ET-A2N5      TCGA-ET-A39I 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A39J      TCGA-ET-A39L      TCGA-ET-A39M      TCGA-ET-A39N 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A39P      TCGA-ET-A39R      TCGA-ET-A39T      TCGA-ET-A3BN 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A3BP      TCGA-ET-A3BS      TCGA-ET-A3BT      TCGA-ET-A3BU 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A3BV      TCGA-ET-A3BW      TCGA-ET-A3BX      TCGA-ET-A3DO 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A3DP      TCGA-ET-A3DS      TCGA-ET-A3DT      TCGA-ET-A3DV 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-ET-A3DW      TCGA-FE-A22Z      TCGA-FE-A230      TCGA-FE-A231 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-FE-A232      TCGA-FE-A233      TCGA-FE-A234      TCGA-FE-A235 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-FE-A236      TCGA-FE-A237      TCGA-FE-A23A      TCGA-FY-A2QD 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-FY-A3BL      TCGA-FY-A3ON      TCGA-GE-A2C6      TCGA-H2-A2K9 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-IM-A3EB      TCGA-IM-A3ED      TCGA-J8-A3NZ      TCGA-J8-A3O0 
"ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" "ABCD1 WILD-TYPE" 
     TCGA-J8-A3O1 
"ABCD1 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCD1 MUTATED        1      2      0      1
  ABCD1 WILD-TYPE    153    162     58    113
D25V5, multiclass
        clus
vv       ABCD1 MUTATED ABCD1 WILD-TYPE
  CLUS_1             1             153
  CLUS_2             2             162
  CLUS_3             0              58
  CLUS_4             1             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ABCD1 MUTATED        1      2      0      1      0
  ABCD1 WILD-TYPE    102    129     85     94     76
D25V6, multiclass
        clus
vv       ABCD1 MUTATED ABCD1 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             2             129
  CLUS_3             0              85
  CLUS_4             1              94
  CLUS_5             0              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCD1 MUTATED        0      2      2      0
  ABCD1 WILD-TYPE    163    141    117     66
D25V7, multiclass
        clus
vv       ABCD1 MUTATED ABCD1 WILD-TYPE
  CLUS_1             0             163
  CLUS_2             2             141
  CLUS_3             2             117
  CLUS_4             0              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCD1 MUTATED        1      1      2
  ABCD1 WILD-TYPE    175    124    188
D25V8, multiclass
        clus
vv       ABCD1 MUTATED ABCD1 WILD-TYPE
  CLUS_1             1             175
  CLUS_2             1             124
  CLUS_3             2             188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ABCD1 MUTATED        0      2      0      2
  ABCD1 WILD-TYPE    129    120    106    103
D25V9, multiclass
        clus
vv       ABCD1 MUTATED ABCD1 WILD-TYPE
  CLUS_1             0             129
  CLUS_2             2             120
  CLUS_3             0             106
  CLUS_4             2             103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  ABCD1 MUTATED        0      2      2
  ABCD1 WILD-TYPE    160    116    182
D25V10, multiclass
        clus
vv       ABCD1 MUTATED ABCD1 WILD-TYPE
  CLUS_1             0             160
  CLUS_2             2             116
  CLUS_3             2             182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(26) Variable = MYH10 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYH10 MUTATED        2      1      1
  MYH10 WILD-TYPE    129    136    219
D26V1, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             2             129
  CLUS_2             1             136
  CLUS_3             1             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYH10 MUTATED        1      2      0      0      1
  MYH10 WILD-TYPE     45    142     84     40    177
D26V2, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             1              45
  CLUS_2             2             142
  CLUS_3             0              84
  CLUS_4             0              40
  CLUS_5             1             177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH10 MUTATED        0      0      0      0
  MYH10 WILD-TYPE     63     61     40     51
D26V3, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  MYH10 MUTATED        0      0      0      0      0      0      0
  MYH10 WILD-TYPE     46     27     31     26     49     27      9
D26V4, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH10 MUTATED        1      2      0      1
  MYH10 WILD-TYPE    153    162     58    113
D26V5, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             1             153
  CLUS_2             2             162
  CLUS_3             0              58
  CLUS_4             1             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  MYH10 MUTATED        1      1      1      1      0
  MYH10 WILD-TYPE    102    130     84     94     76
D26V6, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             1             130
  CLUS_3             1              84
  CLUS_4             1              94
  CLUS_5             0              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH10 MUTATED        2      1      1      0
  MYH10 WILD-TYPE    161    142    118     66
D26V7, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             2             161
  CLUS_2             1             142
  CLUS_3             1             118
  CLUS_4             0              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYH10 MUTATED        3      1      0
  MYH10 WILD-TYPE    173    124    190
D26V8, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             3             173
  CLUS_2             1             124
  CLUS_3             0             190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  MYH10 MUTATED        3      1      0      0
  MYH10 WILD-TYPE    126    121    106    105
D26V9, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             3             126
  CLUS_2             1             121
  CLUS_3             0             106
  CLUS_4             0             105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  MYH10 MUTATED        2      1      1
  MYH10 WILD-TYPE    158    117    183
D26V10, multiclass
        clus
vv       MYH10 MUTATED MYH10 WILD-TYPE
  CLUS_1             2             158
  CLUS_2             1             117
  CLUS_3             1             183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(27) Variable = NLRP6 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP6 MUTATED        2      1      1
  NLRP6 WILD-TYPE    129    136    219
D27V1, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             2             129
  CLUS_2             1             136
  CLUS_3             1             219
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLRP6 MUTATED        0      1      0      0      3
  NLRP6 WILD-TYPE     46    143     84     40    175
D27V2, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1             143
  CLUS_3             0              84
  CLUS_4             0              40
  CLUS_5             3             175
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP6 MUTATED        0      0      0      1
  NLRP6 WILD-TYPE     63     61     40     50
D27V3, multiclass
[1] "Remove cluster labels:" "NLRP6 MUTATED"         
clus
  NLRP6 MUTATED NLRP6 WILD-TYPE 
              1             214 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZG      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A18Z      TCGA-BJ-A191      TCGA-BJ-A192      TCGA-BJ-A28R 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A28S      TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A290      TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A2P4      TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-CE-A27D      TCGA-CE-A3MD      TCGA-CE-A3ME      TCGA-DE-A0Y2 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DE-A2OL      TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A13R      TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A13X      TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A1QG      TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A1QN      TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2PP      TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2PU      TCGA-DJ-A2PV      TCGA-DJ-A2PW      TCGA-DJ-A2PY 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2PZ      TCGA-DJ-A2Q0      TCGA-DJ-A2Q1      TCGA-DJ-A2Q2 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2Q4      TCGA-DJ-A2Q5      TCGA-DJ-A2Q6      TCGA-DJ-A2Q7 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2Q8      TCGA-DJ-A2Q9      TCGA-DJ-A2QA      TCGA-DJ-A2QB 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2QC      TCGA-DO-A1JZ      TCGA-DO-A1K0      TCGA-E3-A3DY 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-E3-A3DZ      TCGA-E3-A3E0      TCGA-E3-A3E1      TCGA-E3-A3E3 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-E3-A3E5      TCGA-E8-A2EA      TCGA-E8-A2JQ      TCGA-EL-A3CL 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3CM      TCGA-EL-A3CN      TCGA-EL-A3CO      TCGA-EL-A3CP 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3CR      TCGA-EL-A3CS      TCGA-EL-A3CT      TCGA-EL-A3CU 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3CV      TCGA-EL-A3CW      TCGA-EL-A3CX      TCGA-EL-A3CY 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3CZ      TCGA-EL-A3D0      TCGA-EL-A3D1      TCGA-EL-A3D4 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3D5      TCGA-EL-A3D6      TCGA-EL-A3GO      TCGA-EL-A3GP 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3GQ      TCGA-EL-A3GR      TCGA-EL-A3GS      TCGA-EL-A3GU 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3GV      TCGA-EL-A3GW      TCGA-EL-A3GX      TCGA-EL-A3GY 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3GZ      TCGA-EL-A3H1      TCGA-EL-A3H2      TCGA-EL-A3H3 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3H4      TCGA-EL-A3H5      TCGA-EL-A3H7      TCGA-EL-A3H8 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3MW      TCGA-EL-A3MX      TCGA-EL-A3MY      TCGA-EL-A3MZ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3N2      TCGA-EL-A3N3      TCGA-EM-A1CT      TCGA-EM-A1CU 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A1CV      TCGA-EM-A1CW      TCGA-EM-A1YA      TCGA-EM-A1YB 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A1YC      TCGA-EM-A1YD      TCGA-EM-A1YE      TCGA-EM-A22I 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A22J      TCGA-EM-A22L      TCGA-EM-A22M      TCGA-EM-A22O 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A22Q      TCGA-EM-A2CJ      TCGA-EM-A2CK      TCGA-EM-A2CL 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A2CN      TCGA-EM-A2CO      TCGA-EM-A2CP      TCGA-EM-A2CQ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A2CR      TCGA-EM-A2CS      TCGA-EM-A2CU      TCGA-EM-A2OV 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A2OY      TCGA-EM-A2P1      TCGA-EM-A3AI      TCGA-EM-A3AJ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A3AL      TCGA-EM-A3AN      TCGA-EM-A3AO      TCGA-EM-A3AP 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A3FJ      TCGA-EM-A3FL      TCGA-EM-A3FN      TCGA-EM-A3FP 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A25G      TCGA-ET-A25O      TCGA-ET-A2MY      TCGA-ET-A2MZ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A2N0      TCGA-ET-A2N1      TCGA-ET-A2N4      TCGA-ET-A2N5 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A39I      TCGA-ET-A39J      TCGA-ET-A39L      TCGA-ET-A39M 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A39N      TCGA-ET-A39P      TCGA-ET-A39R      TCGA-ET-A39T 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A3BN      TCGA-ET-A3BP      TCGA-ET-A3BS      TCGA-ET-A3BT 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A3BU      TCGA-ET-A3BV      TCGA-ET-A3BW      TCGA-ET-A3BX 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A3DO      TCGA-ET-A3DP      TCGA-ET-A3DS      TCGA-ET-A3DT 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A3DV      TCGA-ET-A3DW      TCGA-FE-A22Z      TCGA-FE-A230 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FE-A231      TCGA-FE-A232      TCGA-FE-A233      TCGA-FE-A234 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FE-A235      TCGA-FE-A236      TCGA-FE-A237      TCGA-FE-A23A 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FY-A2QD      TCGA-FY-A3BL      TCGA-FY-A3ON      TCGA-GE-A2C6 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-H2-A2K9      TCGA-IM-A3EB      TCGA-IM-A3ED      TCGA-J8-A3NZ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-J8-A3O0      TCGA-J8-A3O1 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  NLRP6 MUTATED        0      0      0      0      1      0      0
  NLRP6 WILD-TYPE     46     27     31     26     48     27      9
D27V4, multiclass
[1] "Remove cluster labels:" "NLRP6 MUTATED"         
clus
  NLRP6 MUTATED NLRP6 WILD-TYPE 
              1             214 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZG      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A18Z      TCGA-BJ-A191      TCGA-BJ-A192      TCGA-BJ-A28R 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A28S      TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A290      TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-BJ-A2P4      TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-CE-A27D      TCGA-CE-A3MD      TCGA-CE-A3ME      TCGA-DE-A0Y2 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DE-A2OL      TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A13R      TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A13X      TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A1QG      TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A1QN      TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2PP      TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2PU      TCGA-DJ-A2PV      TCGA-DJ-A2PW      TCGA-DJ-A2PY 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2PZ      TCGA-DJ-A2Q0      TCGA-DJ-A2Q1      TCGA-DJ-A2Q2 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2Q4      TCGA-DJ-A2Q5      TCGA-DJ-A2Q6      TCGA-DJ-A2Q7 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2Q8      TCGA-DJ-A2Q9      TCGA-DJ-A2QA      TCGA-DJ-A2QB 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-DJ-A2QC      TCGA-DO-A1JZ      TCGA-DO-A1K0      TCGA-E3-A3DY 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-E3-A3DZ      TCGA-E3-A3E0      TCGA-E3-A3E1      TCGA-E3-A3E3 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-E3-A3E5      TCGA-E8-A2EA      TCGA-E8-A2JQ      TCGA-EL-A3CL 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3CM      TCGA-EL-A3CN      TCGA-EL-A3CO      TCGA-EL-A3CP 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3CR      TCGA-EL-A3CS      TCGA-EL-A3CT      TCGA-EL-A3CU 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3CV      TCGA-EL-A3CW      TCGA-EL-A3CX      TCGA-EL-A3CY 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3CZ      TCGA-EL-A3D0      TCGA-EL-A3D1      TCGA-EL-A3D4 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3D5      TCGA-EL-A3D6      TCGA-EL-A3GO      TCGA-EL-A3GP 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3GQ      TCGA-EL-A3GR      TCGA-EL-A3GS      TCGA-EL-A3GU 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3GV      TCGA-EL-A3GW      TCGA-EL-A3GX      TCGA-EL-A3GY 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3GZ      TCGA-EL-A3H1      TCGA-EL-A3H2      TCGA-EL-A3H3 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3H4      TCGA-EL-A3H5      TCGA-EL-A3H7      TCGA-EL-A3H8 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3MW      TCGA-EL-A3MX      TCGA-EL-A3MY      TCGA-EL-A3MZ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EL-A3N2      TCGA-EL-A3N3      TCGA-EM-A1CT      TCGA-EM-A1CU 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A1CV      TCGA-EM-A1CW      TCGA-EM-A1YA      TCGA-EM-A1YB 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A1YC      TCGA-EM-A1YD      TCGA-EM-A1YE      TCGA-EM-A22I 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A22J      TCGA-EM-A22L      TCGA-EM-A22M      TCGA-EM-A22O 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A22Q      TCGA-EM-A2CJ      TCGA-EM-A2CK      TCGA-EM-A2CL 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A2CN      TCGA-EM-A2CO      TCGA-EM-A2CP      TCGA-EM-A2CQ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A2CR      TCGA-EM-A2CS      TCGA-EM-A2CU      TCGA-EM-A2OV 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A2OY      TCGA-EM-A2P1      TCGA-EM-A3AI      TCGA-EM-A3AJ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A3AL      TCGA-EM-A3AN      TCGA-EM-A3AO      TCGA-EM-A3AP 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-EM-A3FJ      TCGA-EM-A3FL      TCGA-EM-A3FN      TCGA-EM-A3FP 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A25G      TCGA-ET-A25O      TCGA-ET-A2MY      TCGA-ET-A2MZ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A2N0      TCGA-ET-A2N1      TCGA-ET-A2N4      TCGA-ET-A2N5 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A39I      TCGA-ET-A39J      TCGA-ET-A39L      TCGA-ET-A39M 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A39N      TCGA-ET-A39P      TCGA-ET-A39R      TCGA-ET-A39T 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A3BN      TCGA-ET-A3BP      TCGA-ET-A3BS      TCGA-ET-A3BT 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A3BU      TCGA-ET-A3BV      TCGA-ET-A3BW      TCGA-ET-A3BX 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A3DO      TCGA-ET-A3DP      TCGA-ET-A3DS      TCGA-ET-A3DT 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-ET-A3DV      TCGA-ET-A3DW      TCGA-FE-A22Z      TCGA-FE-A230 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FE-A231      TCGA-FE-A232      TCGA-FE-A233      TCGA-FE-A234 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FE-A235      TCGA-FE-A236      TCGA-FE-A237      TCGA-FE-A23A 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-FY-A2QD      TCGA-FY-A3BL      TCGA-FY-A3ON      TCGA-GE-A2C6 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-H2-A2K9      TCGA-IM-A3EB      TCGA-IM-A3ED      TCGA-J8-A3NZ 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
     TCGA-J8-A3O0      TCGA-J8-A3O1 
"NLRP6 WILD-TYPE" "NLRP6 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP6 MUTATED        1      1      0      2
  NLRP6 WILD-TYPE    153    163     58    112
D27V5, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             1             153
  CLUS_2             1             163
  CLUS_3             0              58
  CLUS_4             2             112
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  NLRP6 MUTATED        0      1      0      2      1
  NLRP6 WILD-TYPE    103    130     85     93     75
D27V6, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             0             103
  CLUS_2             1             130
  CLUS_3             0              85
  CLUS_4             2              93
  CLUS_5             1              75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP6 MUTATED        0      2      1      1
  NLRP6 WILD-TYPE    163    141    118     65
D27V7, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             0             163
  CLUS_2             2             141
  CLUS_3             1             118
  CLUS_4             1              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP6 MUTATED        0      1      3
  NLRP6 WILD-TYPE    176    124    187
D27V8, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             0             176
  CLUS_2             1             124
  CLUS_3             3             187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NLRP6 MUTATED        0      2      1      1
  NLRP6 WILD-TYPE    129    120    105    104
D27V9, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             0             129
  CLUS_2             2             120
  CLUS_3             1             105
  CLUS_4             1             104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  NLRP6 MUTATED        0      1      3
  NLRP6 WILD-TYPE    160    117    181
D27V10, multiclass
        clus
vv       NLRP6 MUTATED NLRP6 WILD-TYPE
  CLUS_1             0             160
  CLUS_2             1             117
  CLUS_3             3             181
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(28) Variable = IGSF3 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGSF3 MUTATED        0      2      2
  IGSF3 WILD-TYPE    131    135    218
D28V1, multiclass
        clus
vv       IGSF3 MUTATED IGSF3 WILD-TYPE
  CLUS_1             0             131
  CLUS_2             2             135
  CLUS_3             2             218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGSF3 MUTATED        0      2      0      0      2
  IGSF3 WILD-TYPE     46    142     84     40    176
D28V2, multiclass
        clus
vv       IGSF3 MUTATED IGSF3 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             2             142
  CLUS_3             0              84
  CLUS_4             0              40
  CLUS_5             2             176
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF3 MUTATED        1      0      0      0
  IGSF3 WILD-TYPE     62     61     40     51
D28V3, multiclass
[1] "Remove cluster labels:" "IGSF3 MUTATED"         
clus
  IGSF3 MUTATED IGSF3 WILD-TYPE 
              1             214 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZG      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-BJ-A18Z      TCGA-BJ-A191      TCGA-BJ-A192      TCGA-BJ-A28R 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-BJ-A28S      TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-BJ-A290      TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-BJ-A2P4      TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-CE-A27D      TCGA-CE-A3MD      TCGA-CE-A3ME      TCGA-DE-A0Y2 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DE-A2OL      TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A13R      TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A13X      TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A1QG      TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A1QN      TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A2PP      TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A2PU      TCGA-DJ-A2PV      TCGA-DJ-A2PW      TCGA-DJ-A2PY 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A2PZ      TCGA-DJ-A2Q0      TCGA-DJ-A2Q1      TCGA-DJ-A2Q2 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A2Q4      TCGA-DJ-A2Q5      TCGA-DJ-A2Q6      TCGA-DJ-A2Q7 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A2Q8      TCGA-DJ-A2Q9      TCGA-DJ-A2QA      TCGA-DJ-A2QB 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A2QC      TCGA-DO-A1JZ      TCGA-DO-A1K0      TCGA-E3-A3DY 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-E3-A3DZ      TCGA-E3-A3E0      TCGA-E3-A3E1      TCGA-E3-A3E3 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-E3-A3E5      TCGA-E8-A2EA      TCGA-E8-A2JQ      TCGA-EL-A3CL 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3CM      TCGA-EL-A3CN      TCGA-EL-A3CO      TCGA-EL-A3CP 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3CR      TCGA-EL-A3CS      TCGA-EL-A3CT      TCGA-EL-A3CU 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3CV      TCGA-EL-A3CW      TCGA-EL-A3CX      TCGA-EL-A3CY 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3CZ      TCGA-EL-A3D0      TCGA-EL-A3D1      TCGA-EL-A3D4 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3D5      TCGA-EL-A3D6      TCGA-EL-A3GO      TCGA-EL-A3GP 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3GQ      TCGA-EL-A3GR      TCGA-EL-A3GS      TCGA-EL-A3GU 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3GV      TCGA-EL-A3GW      TCGA-EL-A3GX      TCGA-EL-A3GY 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3GZ      TCGA-EL-A3H1      TCGA-EL-A3H2      TCGA-EL-A3H3 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3H4      TCGA-EL-A3H5      TCGA-EL-A3H7      TCGA-EL-A3H8 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3MW      TCGA-EL-A3MX      TCGA-EL-A3MY      TCGA-EL-A3MZ 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3N2      TCGA-EL-A3N3      TCGA-EM-A1CT      TCGA-EM-A1CU 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A1CV      TCGA-EM-A1CW      TCGA-EM-A1YA      TCGA-EM-A1YB 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A1YC      TCGA-EM-A1YD      TCGA-EM-A1YE      TCGA-EM-A22I 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A22J      TCGA-EM-A22L      TCGA-EM-A22M      TCGA-EM-A22O 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A22Q      TCGA-EM-A2CJ      TCGA-EM-A2CL      TCGA-EM-A2CN 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A2CO      TCGA-EM-A2CP      TCGA-EM-A2CQ      TCGA-EM-A2CR 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A2CS      TCGA-EM-A2CU      TCGA-EM-A2OV      TCGA-EM-A2OY 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A2P1      TCGA-EM-A3AI      TCGA-EM-A3AJ      TCGA-EM-A3AL 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A3AN      TCGA-EM-A3AO      TCGA-EM-A3AP      TCGA-EM-A3FJ 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A3FL      TCGA-EM-A3FN      TCGA-EM-A3FO      TCGA-EM-A3FP 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A25G      TCGA-ET-A25O      TCGA-ET-A2MY      TCGA-ET-A2MZ 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A2N0      TCGA-ET-A2N1      TCGA-ET-A2N4      TCGA-ET-A2N5 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A39I      TCGA-ET-A39J      TCGA-ET-A39L      TCGA-ET-A39M 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A39N      TCGA-ET-A39P      TCGA-ET-A39R      TCGA-ET-A39T 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A3BN      TCGA-ET-A3BP      TCGA-ET-A3BS      TCGA-ET-A3BT 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A3BU      TCGA-ET-A3BV      TCGA-ET-A3BW      TCGA-ET-A3BX 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A3DO      TCGA-ET-A3DP      TCGA-ET-A3DS      TCGA-ET-A3DT 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A3DV      TCGA-ET-A3DW      TCGA-FE-A22Z      TCGA-FE-A230 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-FE-A231      TCGA-FE-A232      TCGA-FE-A233      TCGA-FE-A234 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-FE-A235      TCGA-FE-A236      TCGA-FE-A237      TCGA-FE-A23A 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-FY-A2QD      TCGA-FY-A3BL      TCGA-FY-A3ON      TCGA-GE-A2C6 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-H2-A2K9      TCGA-IM-A3EB      TCGA-IM-A3ED      TCGA-J8-A3NZ 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-J8-A3O0      TCGA-J8-A3O1 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  IGSF3 MUTATED        1      0      0      0      0      0      0
  IGSF3 WILD-TYPE     45     27     31     26     49     27      9
D28V4, multiclass
[1] "Remove cluster labels:" "IGSF3 MUTATED"         
clus
  IGSF3 MUTATED IGSF3 WILD-TYPE 
              1             214 
     TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2      TCGA-BJ-A0Z3 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB      TCGA-BJ-A0ZC 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-BJ-A0ZE      TCGA-BJ-A0ZG      TCGA-BJ-A0ZJ      TCGA-BJ-A18Y 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-BJ-A18Z      TCGA-BJ-A191      TCGA-BJ-A192      TCGA-BJ-A28R 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-BJ-A28S      TCGA-BJ-A28T      TCGA-BJ-A28V      TCGA-BJ-A28Z 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-BJ-A290      TCGA-BJ-A2N7      TCGA-BJ-A2N9      TCGA-BJ-A2NA 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-BJ-A2P4      TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-CE-A13K 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-CE-A27D      TCGA-CE-A3MD      TCGA-CE-A3ME      TCGA-DE-A0Y2 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DE-A2OL      TCGA-DE-A3KN      TCGA-DJ-A13M      TCGA-DJ-A13O 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A13R      TCGA-DJ-A13S      TCGA-DJ-A13V      TCGA-DJ-A13W 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A13X      TCGA-DJ-A1QD      TCGA-DJ-A1QE      TCGA-DJ-A1QF 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A1QG      TCGA-DJ-A1QI      TCGA-DJ-A1QL      TCGA-DJ-A1QM 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A1QN      TCGA-DJ-A1QO      TCGA-DJ-A2PN      TCGA-DJ-A2PO 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A2PP      TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A2PU      TCGA-DJ-A2PV      TCGA-DJ-A2PW      TCGA-DJ-A2PY 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A2PZ      TCGA-DJ-A2Q0      TCGA-DJ-A2Q1      TCGA-DJ-A2Q2 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A2Q4      TCGA-DJ-A2Q5      TCGA-DJ-A2Q6      TCGA-DJ-A2Q7 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A2Q8      TCGA-DJ-A2Q9      TCGA-DJ-A2QA      TCGA-DJ-A2QB 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-DJ-A2QC      TCGA-DO-A1JZ      TCGA-DO-A1K0      TCGA-E3-A3DY 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-E3-A3DZ      TCGA-E3-A3E0      TCGA-E3-A3E1      TCGA-E3-A3E3 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-E3-A3E5      TCGA-E8-A2EA      TCGA-E8-A2JQ      TCGA-EL-A3CL 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3CM      TCGA-EL-A3CN      TCGA-EL-A3CO      TCGA-EL-A3CP 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3CR      TCGA-EL-A3CS      TCGA-EL-A3CT      TCGA-EL-A3CU 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3CV      TCGA-EL-A3CW      TCGA-EL-A3CX      TCGA-EL-A3CY 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3CZ      TCGA-EL-A3D0      TCGA-EL-A3D1      TCGA-EL-A3D4 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3D5      TCGA-EL-A3D6      TCGA-EL-A3GO      TCGA-EL-A3GP 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3GQ      TCGA-EL-A3GR      TCGA-EL-A3GS      TCGA-EL-A3GU 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3GV      TCGA-EL-A3GW      TCGA-EL-A3GX      TCGA-EL-A3GY 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3GZ      TCGA-EL-A3H1      TCGA-EL-A3H2      TCGA-EL-A3H3 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3H4      TCGA-EL-A3H5      TCGA-EL-A3H7      TCGA-EL-A3H8 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3MW      TCGA-EL-A3MX      TCGA-EL-A3MY      TCGA-EL-A3MZ 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EL-A3N2      TCGA-EL-A3N3      TCGA-EM-A1CT      TCGA-EM-A1CU 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A1CV      TCGA-EM-A1CW      TCGA-EM-A1YA      TCGA-EM-A1YB 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A1YC      TCGA-EM-A1YD      TCGA-EM-A1YE      TCGA-EM-A22I 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A22J      TCGA-EM-A22L      TCGA-EM-A22M      TCGA-EM-A22O 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A22Q      TCGA-EM-A2CJ      TCGA-EM-A2CL      TCGA-EM-A2CN 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A2CO      TCGA-EM-A2CP      TCGA-EM-A2CQ      TCGA-EM-A2CR 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A2CS      TCGA-EM-A2CU      TCGA-EM-A2OV      TCGA-EM-A2OY 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A2P1      TCGA-EM-A3AI      TCGA-EM-A3AJ      TCGA-EM-A3AL 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A3AN      TCGA-EM-A3AO      TCGA-EM-A3AP      TCGA-EM-A3FJ 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-EM-A3FL      TCGA-EM-A3FN      TCGA-EM-A3FO      TCGA-EM-A3FP 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A25G      TCGA-ET-A25O      TCGA-ET-A2MY      TCGA-ET-A2MZ 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A2N0      TCGA-ET-A2N1      TCGA-ET-A2N4      TCGA-ET-A2N5 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A39I      TCGA-ET-A39J      TCGA-ET-A39L      TCGA-ET-A39M 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A39N      TCGA-ET-A39P      TCGA-ET-A39R      TCGA-ET-A39T 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A3BN      TCGA-ET-A3BP      TCGA-ET-A3BS      TCGA-ET-A3BT 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A3BU      TCGA-ET-A3BV      TCGA-ET-A3BW      TCGA-ET-A3BX 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A3DO      TCGA-ET-A3DP      TCGA-ET-A3DS      TCGA-ET-A3DT 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-ET-A3DV      TCGA-ET-A3DW      TCGA-FE-A22Z      TCGA-FE-A230 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-FE-A231      TCGA-FE-A232      TCGA-FE-A233      TCGA-FE-A234 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-FE-A235      TCGA-FE-A236      TCGA-FE-A237      TCGA-FE-A23A 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-FY-A2QD      TCGA-FY-A3BL      TCGA-FY-A3ON      TCGA-GE-A2C6 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-H2-A2K9      TCGA-IM-A3EB      TCGA-IM-A3ED      TCGA-J8-A3NZ 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
     TCGA-J8-A3O0      TCGA-J8-A3O1 
"IGSF3 WILD-TYPE" "IGSF3 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF3 MUTATED        1      2      0      1
  IGSF3 WILD-TYPE    153    162     58    113
D28V5, multiclass
        clus
vv       IGSF3 MUTATED IGSF3 WILD-TYPE
  CLUS_1             1             153
  CLUS_2             2             162
  CLUS_3             0              58
  CLUS_4             1             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  IGSF3 MUTATED        0      2      0      1      1
  IGSF3 WILD-TYPE    103    129     85     94     75
D28V6, multiclass
        clus
vv       IGSF3 MUTATED IGSF3 WILD-TYPE
  CLUS_1             0             103
  CLUS_2             2             129
  CLUS_3             0              85
  CLUS_4             1              94
  CLUS_5             1              75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF3 MUTATED        0      2      2      0
  IGSF3 WILD-TYPE    163    141    117     66
D28V7, multiclass
        clus
vv       IGSF3 MUTATED IGSF3 WILD-TYPE
  CLUS_1             0             163
  CLUS_2             2             141
  CLUS_3             2             117
  CLUS_4             0              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGSF3 MUTATED        0      2      2
  IGSF3 WILD-TYPE    176    123    188
D28V8, multiclass
        clus
vv       IGSF3 MUTATED IGSF3 WILD-TYPE
  CLUS_1             0             176
  CLUS_2             2             123
  CLUS_3             2             188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IGSF3 MUTATED        0      2      2      0
  IGSF3 WILD-TYPE    129    120    104    105
D28V9, multiclass
        clus
vv       IGSF3 MUTATED IGSF3 WILD-TYPE
  CLUS_1             0             129
  CLUS_2             2             120
  CLUS_3             2             104
  CLUS_4             0             105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  IGSF3 MUTATED        0      2      2
  IGSF3 WILD-TYPE    160    116    182
D28V10, multiclass
        clus
vv       IGSF3 MUTATED IGSF3 WILD-TYPE
  CLUS_1             0             160
  CLUS_2             2             116
  CLUS_3             2             182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(29) Variable = PRMT8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRMT8 MUTATED        0      0      3
  PRMT8 WILD-TYPE    131    137    217
D29V1, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             0             131
  CLUS_2             0             137
  CLUS_3             3             217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRMT8 MUTATED        0      1      1      0      1
  PRMT8 WILD-TYPE     46    143     83     40    177
D29V2, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             1             143
  CLUS_3             1              83
  CLUS_4             0              40
  CLUS_5             1             177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT8 MUTATED        0      0      0      0
  PRMT8 WILD-TYPE     63     61     40     51
D29V3, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  PRMT8 MUTATED        0      0      0      0      0      0      0
  PRMT8 WILD-TYPE     46     27     31     26     49     27      9
D29V4, multiclass
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT8 MUTATED        0      1      1      1
  PRMT8 WILD-TYPE    154    163     57    113
D29V5, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             0             154
  CLUS_2             1             163
  CLUS_3             1              57
  CLUS_4             1             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  PRMT8 MUTATED        0      1      1      1      0
  PRMT8 WILD-TYPE    103    130     84     94     76
D29V6, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             0             103
  CLUS_2             1             130
  CLUS_3             1              84
  CLUS_4             1              94
  CLUS_5             0              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT8 MUTATED        2      1      0      0
  PRMT8 WILD-TYPE    161    142    119     66
D29V7, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             2             161
  CLUS_2             1             142
  CLUS_3             0             119
  CLUS_4             0              66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRMT8 MUTATED        2      1      0
  PRMT8 WILD-TYPE    174    124    190
D29V8, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             2             174
  CLUS_2             1             124
  CLUS_3             0             190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PRMT8 MUTATED        2      1      0      0
  PRMT8 WILD-TYPE    127    121    106    105
D29V9, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             2             127
  CLUS_2             1             121
  CLUS_3             0             106
  CLUS_4             0             105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  PRMT8 MUTATED        2      1      0
  PRMT8 WILD-TYPE    158    117    184
D29V10, multiclass
        clus
vv       PRMT8 MUTATED PRMT8 WILD-TYPE
  CLUS_1             2             158
  CLUS_2             1             117
  CLUS_3             0             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(30) Variable = ARMCX3 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARMCX3 MUTATED        1      0      2
  ARMCX3 WILD-TYPE    130    137    218
D30V1, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              1              130
  CLUS_2              0              137
  CLUS_3              2              218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARMCX3 MUTATED        0      1      1      0      1
  ARMCX3 WILD-TYPE     46    143     83     40    177
D30V2, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              1              143
  CLUS_3              1               83
  CLUS_4              0               40
  CLUS_5              1              177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMCX3 MUTATED        0      0      0      0
  ARMCX3 WILD-TYPE     63     61     40     51
D30V3, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ARMCX3 MUTATED        0      0      0      0      0      0      0
  ARMCX3 WILD-TYPE     46     27     31     26     49     27      9
D30V4, multiclass
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMCX3 MUTATED        0      2      0      1
  ARMCX3 WILD-TYPE    154    162     58    113
D30V5, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              0              154
  CLUS_2              2              162
  CLUS_3              0               58
  CLUS_4              1              113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ARMCX3 MUTATED        0      1      1      1      0
  ARMCX3 WILD-TYPE    103    130     84     94     76
D30V6, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              0              103
  CLUS_2              1              130
  CLUS_3              1               84
  CLUS_4              1               94
  CLUS_5              0               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMCX3 MUTATED        0      3      0      0
  ARMCX3 WILD-TYPE    163    140    119     66
D30V7, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              0              163
  CLUS_2              3              140
  CLUS_3              0              119
  CLUS_4              0               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARMCX3 MUTATED        0      1      2
  ARMCX3 WILD-TYPE    176    124    188
D30V8, multiclass
        clus
vv       ARMCX3 MUTATED ARMCX3 WILD-TYPE
  CLUS_1              0              176
  CLUS_2              1              124
  CLUS_3              2              188
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ARMCX3 MUTATED        0      1      1      0
  ARMCX3 WILD-TYPE    129    121    105    105
D30V9, multiclass
[1] "Remove cluster labels:" "ARMCX3 MUTATED"        
clus
  ARMCX3 MUTATED ARMCX3 WILD-TYPE 
               2              460 
      TCGA-4C-A93U       TCGA-BJ-A0YZ       TCGA-BJ-A0Z0       TCGA-BJ-A0Z2 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A0Z3       TCGA-BJ-A0ZB       TCGA-BJ-A0ZC       TCGA-BJ-A0ZE 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A0ZG       TCGA-BJ-A0ZH       TCGA-BJ-A18Y       TCGA-BJ-A18Z 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A191       TCGA-BJ-A192       TCGA-BJ-A28R       TCGA-BJ-A28S 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A28T       TCGA-BJ-A28V       TCGA-BJ-A28X       TCGA-BJ-A28Z 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A290       TCGA-BJ-A2N7       TCGA-BJ-A2N8       TCGA-BJ-A2N9 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A2NA       TCGA-BJ-A2P4       TCGA-BJ-A3EZ       TCGA-BJ-A3F0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A3PR       TCGA-BJ-A3PT       TCGA-BJ-A3PU       TCGA-BJ-A45D 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A45E       TCGA-BJ-A45F       TCGA-BJ-A45G       TCGA-BJ-A45H 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A45I       TCGA-BJ-A45J       TCGA-BJ-A45K       TCGA-BJ-A4O8 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A4O9       TCGA-CE-A27D       TCGA-CE-A3MD       TCGA-CE-A3ME 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-CE-A481       TCGA-CE-A482       TCGA-CE-A483       TCGA-CE-A484 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-CE-A485       TCGA-DE-A0XZ       TCGA-DE-A0Y2       TCGA-DE-A0Y3 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DE-A2OL       TCGA-DE-A3KN       TCGA-DE-A4M8       TCGA-DE-A4M9 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DE-A4MA       TCGA-DE-A4MB       TCGA-DE-A4MC       TCGA-DE-A69J 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DE-A69K       TCGA-DE-A7U5       TCGA-DJ-A13L       TCGA-DJ-A13O 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A13P       TCGA-DJ-A13R       TCGA-DJ-A13S       TCGA-DJ-A13T 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A13X       TCGA-DJ-A1QD       TCGA-DJ-A1QE       TCGA-DJ-A1QF 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A1QG       TCGA-DJ-A1QH       TCGA-DJ-A1QI       TCGA-DJ-A1QL 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A1QM       TCGA-DJ-A1QN       TCGA-DJ-A1QO       TCGA-DJ-A1QQ 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A2PN       TCGA-DJ-A2PO       TCGA-DJ-A2PP       TCGA-DJ-A2PQ 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A2PR       TCGA-DJ-A2PS       TCGA-DJ-A2PT       TCGA-DJ-A2PU 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A2PV       TCGA-DJ-A2PW       TCGA-DJ-A2PX       TCGA-DJ-A2PY 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A2PZ       TCGA-DJ-A2Q0       TCGA-DJ-A2Q1       TCGA-DJ-A2Q2 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A2Q3       TCGA-DJ-A2Q4       TCGA-DJ-A2Q5       TCGA-DJ-A2Q6 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A2Q7       TCGA-DJ-A2Q8       TCGA-DJ-A2Q9       TCGA-DJ-A2QA 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A2QB       TCGA-DJ-A2QC       TCGA-DJ-A3UK       TCGA-DJ-A3UM 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3UN       TCGA-DJ-A3UO       TCGA-DJ-A3UP       TCGA-DJ-A3UQ 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3UR       TCGA-DJ-A3UT       TCGA-DJ-A3UU       TCGA-DJ-A3UW 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3UX       TCGA-DJ-A3UY       TCGA-DJ-A3UZ       TCGA-DJ-A3V0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3V2       TCGA-DJ-A3V3       TCGA-DJ-A3V4       TCGA-DJ-A3V5 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3V8       TCGA-DJ-A3V9       TCGA-DJ-A3VA       TCGA-DJ-A3VB 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3VD       TCGA-DJ-A3VE       TCGA-DJ-A3VF       TCGA-DJ-A3VG 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3VI       TCGA-DJ-A3VJ       TCGA-DJ-A3VK       TCGA-DJ-A3VL 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3VM       TCGA-DJ-A4UL       TCGA-DJ-A4UP       TCGA-DJ-A4UQ 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A4UR       TCGA-DJ-A4UT       TCGA-DJ-A4UW       TCGA-DJ-A4V0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A4V2       TCGA-DJ-A4V4       TCGA-DJ-A4V5       TCGA-DO-A1JZ 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DO-A1K0       TCGA-DO-A2HM       TCGA-E3-A3DY       TCGA-E3-A3DZ 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-E3-A3E0       TCGA-E3-A3E1       TCGA-E3-A3E2       TCGA-E3-A3E3 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-E3-A3E5       TCGA-E8-A242       TCGA-E8-A2EA       TCGA-E8-A2JQ 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-E8-A3X7       TCGA-E8-A413       TCGA-E8-A414       TCGA-E8-A415 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-E8-A416       TCGA-E8-A417       TCGA-E8-A418       TCGA-E8-A419 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-E8-A432       TCGA-E8-A433       TCGA-E8-A434       TCGA-E8-A436 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-E8-A437       TCGA-E8-A438       TCGA-E8-A44K       TCGA-E8-A44M 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3CL       TCGA-EL-A3CM       TCGA-EL-A3CN       TCGA-EL-A3CO 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3CP       TCGA-EL-A3CR       TCGA-EL-A3CS       TCGA-EL-A3CT 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3CU       TCGA-EL-A3CV       TCGA-EL-A3CW       TCGA-EL-A3CY 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3D0       TCGA-EL-A3D1       TCGA-EL-A3D5       TCGA-EL-A3D6 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3GO       TCGA-EL-A3GP       TCGA-EL-A3GQ       TCGA-EL-A3GR 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3GU       TCGA-EL-A3GV       TCGA-EL-A3GW       TCGA-EL-A3GX 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3GY       TCGA-EL-A3GZ       TCGA-EL-A3H1       TCGA-EL-A3H2 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3H3       TCGA-EL-A3H4       TCGA-EL-A3H5       TCGA-EL-A3H7 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3H8       TCGA-EL-A3MW       TCGA-EL-A3MX       TCGA-EL-A3MY 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3MZ       TCGA-EL-A3N2       TCGA-EL-A3N3       TCGA-EL-A3T0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3T1       TCGA-EL-A3T2       TCGA-EL-A3T3       TCGA-EL-A3T6 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3T7       TCGA-EL-A3T8       TCGA-EL-A3T9       TCGA-EL-A3TA 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3TB       TCGA-EL-A3ZG       TCGA-EL-A3ZH       TCGA-EL-A3ZK 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3ZL       TCGA-EL-A3ZM       TCGA-EL-A3ZN       TCGA-EL-A3ZO 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3ZP       TCGA-EL-A3ZQ       TCGA-EL-A3ZR       TCGA-EL-A3ZS 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3ZT       TCGA-EL-A4JV       TCGA-EL-A4JW       TCGA-EL-A4JX 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A4JZ       TCGA-EL-A4K0       TCGA-EL-A4K1       TCGA-EL-A4K2 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A4K4       TCGA-EL-A4K6       TCGA-EL-A4K7       TCGA-EL-A4K9 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A4KD       TCGA-EL-A4KG       TCGA-EL-A4KH       TCGA-EL-A4KI 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A1CU       TCGA-EM-A1CV       TCGA-EM-A1CW       TCGA-EM-A1YA 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A1YB       TCGA-EM-A1YD       TCGA-EM-A1YE       TCGA-EM-A22I 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A22J       TCGA-EM-A22K       TCGA-EM-A22L       TCGA-EM-A22M 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A22N       TCGA-EM-A22O       TCGA-EM-A22P       TCGA-EM-A22Q 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A2CJ       TCGA-EM-A2CK       TCGA-EM-A2CL       TCGA-EM-A2CN 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A2CO       TCGA-EM-A2CP       TCGA-EM-A2CQ       TCGA-EM-A2CR 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A2CS       TCGA-EM-A2CT       TCGA-EM-A2CU       TCGA-EM-A2OV 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A2OW       TCGA-EM-A2OX       TCGA-EM-A2OZ       TCGA-EM-A2P0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A2P1       TCGA-EM-A2P2       TCGA-EM-A2P3       TCGA-EM-A3AI 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A3AJ       TCGA-EM-A3AK       TCGA-EM-A3AL       TCGA-EM-A3AN 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A3AO       TCGA-EM-A3AP       TCGA-EM-A3AQ       TCGA-EM-A3AR 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A3FJ       TCGA-EM-A3FK       TCGA-EM-A3FM       TCGA-EM-A3FN 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A3FO       TCGA-EM-A3FP       TCGA-EM-A3FQ       TCGA-EM-A3FR 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A3O3       TCGA-EM-A3O6       TCGA-EM-A3O7       TCGA-EM-A3O8 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A3O9       TCGA-EM-A3OA       TCGA-EM-A3ST       TCGA-EM-A3SU 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A3SZ       TCGA-EM-A4FF       TCGA-EM-A4FH       TCGA-EM-A4FM 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A4FN       TCGA-EM-A4FO       TCGA-EM-A4FQ       TCGA-EM-A4FR 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A4FU       TCGA-EM-A4FV       TCGA-EM-A4G1       TCGA-ET-A25G 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A25J       TCGA-ET-A25K       TCGA-ET-A25O       TCGA-ET-A25R 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A2MX       TCGA-ET-A2MY       TCGA-ET-A2MZ       TCGA-ET-A2N0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A2N1       TCGA-ET-A2N3       TCGA-ET-A2N5       TCGA-ET-A39I 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A39J       TCGA-ET-A39K       TCGA-ET-A39M       TCGA-ET-A39N 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A39O       TCGA-ET-A39P       TCGA-ET-A39R       TCGA-ET-A39S 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A39T       TCGA-ET-A3BN       TCGA-ET-A3BO       TCGA-ET-A3BP 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A3BQ       TCGA-ET-A3BS       TCGA-ET-A3BU       TCGA-ET-A3BV 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A3BW       TCGA-ET-A3BX       TCGA-ET-A3DO       TCGA-ET-A3DP 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A3DQ       TCGA-ET-A3DR       TCGA-ET-A3DS       TCGA-ET-A3DT 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A3DU       TCGA-ET-A3DV       TCGA-ET-A40P       TCGA-ET-A40Q 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A40R       TCGA-ET-A40S       TCGA-ET-A40T       TCGA-ET-A4KN 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A4KQ       TCGA-FE-A22Z       TCGA-FE-A230       TCGA-FE-A231 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FE-A232       TCGA-FE-A233       TCGA-FE-A234       TCGA-FE-A235 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FE-A236       TCGA-FE-A237       TCGA-FE-A23A       TCGA-FE-A3PA 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FE-A3PB       TCGA-FE-A3PC       TCGA-FE-A3PD       TCGA-FK-A3S3 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FK-A3SB       TCGA-FK-A3SD       TCGA-FK-A3SE       TCGA-FK-A3SG 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FK-A3SH       TCGA-FK-A4UB       TCGA-FY-A2QD       TCGA-FY-A3BL 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FY-A3I4       TCGA-FY-A3I5       TCGA-FY-A3NM       TCGA-FY-A3NN 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FY-A3NP       TCGA-FY-A3ON       TCGA-FY-A3R6       TCGA-FY-A3R7 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FY-A3R8       TCGA-FY-A3R9       TCGA-FY-A3RA       TCGA-FY-A3TY 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FY-A3W9       TCGA-FY-A3WA       TCGA-FY-A3YR       TCGA-FY-A40K 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FY-A40L       TCGA-FY-A40M       TCGA-FY-A40N       TCGA-FY-A4B0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FY-A4B3       TCGA-FY-A4B4       TCGA-FY-A76V       TCGA-GE-A2C6 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-H2-A26U       TCGA-H2-A2K9       TCGA-H2-A3RH       TCGA-H2-A3RI 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-H2-A421       TCGA-H2-A422       TCGA-IM-A3EB       TCGA-IM-A3ED 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-IM-A3U2       TCGA-IM-A3U3       TCGA-IM-A41Y       TCGA-IM-A41Z 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-IM-A420       TCGA-IM-A4EB       TCGA-J8-A3NZ       TCGA-J8-A3O0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-J8-A3O1       TCGA-J8-A3O2       TCGA-J8-A3YD       TCGA-J8-A3YE 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-J8-A3YF       TCGA-J8-A3YG       TCGA-J8-A3YH       TCGA-J8-A42S 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-J8-A4HW       TCGA-KS-A41F       TCGA-KS-A41I       TCGA-KS-A41J 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-KS-A4I1       TCGA-KS-A4I3       TCGA-KS-A4I5       TCGA-KS-A4I7 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-KS-A4I9       TCGA-KS-A4IC       TCGA-KS-A4ID       TCGA-L6-A4EP 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-L6-A4EQ       TCGA-L6-A4ET       TCGA-L6-A4EU       TCGA-MK-A4N6 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-MK-A4N7       TCGA-MK-A4N9       TCGA-MK-A84Z       TCGA-QD-A8IV 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  ARMCX3 MUTATED        0      1      1
  ARMCX3 WILD-TYPE    160    117    183
D30V10, multiclass
[1] "Remove cluster labels:" "ARMCX3 MUTATED"        
clus
  ARMCX3 MUTATED ARMCX3 WILD-TYPE 
               2              460 
      TCGA-4C-A93U       TCGA-BJ-A0YZ       TCGA-BJ-A0Z0       TCGA-BJ-A0Z2 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A0Z3       TCGA-BJ-A0ZB       TCGA-BJ-A0ZC       TCGA-BJ-A0ZE 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A0ZG       TCGA-BJ-A0ZH       TCGA-BJ-A18Y       TCGA-BJ-A18Z 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A191       TCGA-BJ-A192       TCGA-BJ-A28R       TCGA-BJ-A28S 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A28T       TCGA-BJ-A28V       TCGA-BJ-A28X       TCGA-BJ-A28Z 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A290       TCGA-BJ-A2N7       TCGA-BJ-A2N8       TCGA-BJ-A2N9 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A2NA       TCGA-BJ-A2P4       TCGA-BJ-A3EZ       TCGA-BJ-A3F0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A3PR       TCGA-BJ-A3PT       TCGA-BJ-A3PU       TCGA-BJ-A45D 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A45E       TCGA-BJ-A45F       TCGA-BJ-A45G       TCGA-BJ-A45H 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A45I       TCGA-BJ-A45J       TCGA-BJ-A45K       TCGA-BJ-A4O8 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-BJ-A4O9       TCGA-CE-A27D       TCGA-CE-A3MD       TCGA-CE-A3ME 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-CE-A481       TCGA-CE-A482       TCGA-CE-A483       TCGA-CE-A484 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-CE-A485       TCGA-DE-A0XZ       TCGA-DE-A0Y2       TCGA-DE-A0Y3 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DE-A2OL       TCGA-DE-A3KN       TCGA-DE-A4M8       TCGA-DE-A4M9 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DE-A4MA       TCGA-DE-A4MB       TCGA-DE-A4MC       TCGA-DE-A69J 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DE-A69K       TCGA-DE-A7U5       TCGA-DJ-A13L       TCGA-DJ-A13O 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A13P       TCGA-DJ-A13R       TCGA-DJ-A13S       TCGA-DJ-A13T 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A13X       TCGA-DJ-A1QD       TCGA-DJ-A1QE       TCGA-DJ-A1QF 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A1QG       TCGA-DJ-A1QH       TCGA-DJ-A1QI       TCGA-DJ-A1QL 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A1QM       TCGA-DJ-A1QN       TCGA-DJ-A1QO       TCGA-DJ-A1QQ 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A2PN       TCGA-DJ-A2PO       TCGA-DJ-A2PP       TCGA-DJ-A2PQ 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A2PR       TCGA-DJ-A2PS       TCGA-DJ-A2PT       TCGA-DJ-A2PU 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A2PV       TCGA-DJ-A2PW       TCGA-DJ-A2PX       TCGA-DJ-A2PY 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A2PZ       TCGA-DJ-A2Q0       TCGA-DJ-A2Q1       TCGA-DJ-A2Q2 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A2Q3       TCGA-DJ-A2Q4       TCGA-DJ-A2Q5       TCGA-DJ-A2Q6 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A2Q7       TCGA-DJ-A2Q8       TCGA-DJ-A2Q9       TCGA-DJ-A2QA 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A2QB       TCGA-DJ-A2QC       TCGA-DJ-A3UK       TCGA-DJ-A3UM 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3UN       TCGA-DJ-A3UO       TCGA-DJ-A3UP       TCGA-DJ-A3UQ 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3UR       TCGA-DJ-A3UT       TCGA-DJ-A3UU       TCGA-DJ-A3UW 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3UX       TCGA-DJ-A3UY       TCGA-DJ-A3UZ       TCGA-DJ-A3V0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3V2       TCGA-DJ-A3V3       TCGA-DJ-A3V4       TCGA-DJ-A3V5 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3V8       TCGA-DJ-A3V9       TCGA-DJ-A3VA       TCGA-DJ-A3VB 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3VD       TCGA-DJ-A3VE       TCGA-DJ-A3VF       TCGA-DJ-A3VG 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3VI       TCGA-DJ-A3VJ       TCGA-DJ-A3VK       TCGA-DJ-A3VL 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A3VM       TCGA-DJ-A4UL       TCGA-DJ-A4UP       TCGA-DJ-A4UQ 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A4UR       TCGA-DJ-A4UT       TCGA-DJ-A4UW       TCGA-DJ-A4V0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DJ-A4V2       TCGA-DJ-A4V4       TCGA-DJ-A4V5       TCGA-DO-A1JZ 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-DO-A1K0       TCGA-DO-A2HM       TCGA-E3-A3DY       TCGA-E3-A3DZ 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-E3-A3E0       TCGA-E3-A3E1       TCGA-E3-A3E2       TCGA-E3-A3E3 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-E3-A3E5       TCGA-E8-A242       TCGA-E8-A2EA       TCGA-E8-A2JQ 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-E8-A3X7       TCGA-E8-A413       TCGA-E8-A414       TCGA-E8-A415 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-E8-A416       TCGA-E8-A417       TCGA-E8-A418       TCGA-E8-A419 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-E8-A432       TCGA-E8-A433       TCGA-E8-A434       TCGA-E8-A436 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-E8-A437       TCGA-E8-A438       TCGA-E8-A44K       TCGA-E8-A44M 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3CL       TCGA-EL-A3CM       TCGA-EL-A3CN       TCGA-EL-A3CO 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3CP       TCGA-EL-A3CR       TCGA-EL-A3CS       TCGA-EL-A3CT 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3CU       TCGA-EL-A3CV       TCGA-EL-A3CW       TCGA-EL-A3CY 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3D0       TCGA-EL-A3D1       TCGA-EL-A3D5       TCGA-EL-A3D6 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3GO       TCGA-EL-A3GP       TCGA-EL-A3GQ       TCGA-EL-A3GR 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3GU       TCGA-EL-A3GV       TCGA-EL-A3GW       TCGA-EL-A3GX 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3GY       TCGA-EL-A3GZ       TCGA-EL-A3H1       TCGA-EL-A3H2 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3H3       TCGA-EL-A3H4       TCGA-EL-A3H5       TCGA-EL-A3H7 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3H8       TCGA-EL-A3MW       TCGA-EL-A3MX       TCGA-EL-A3MY 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3MZ       TCGA-EL-A3N2       TCGA-EL-A3N3       TCGA-EL-A3T0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3T1       TCGA-EL-A3T2       TCGA-EL-A3T3       TCGA-EL-A3T6 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3T7       TCGA-EL-A3T8       TCGA-EL-A3T9       TCGA-EL-A3TA 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3TB       TCGA-EL-A3ZG       TCGA-EL-A3ZH       TCGA-EL-A3ZK 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3ZL       TCGA-EL-A3ZM       TCGA-EL-A3ZN       TCGA-EL-A3ZO 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3ZP       TCGA-EL-A3ZQ       TCGA-EL-A3ZR       TCGA-EL-A3ZS 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A3ZT       TCGA-EL-A4JV       TCGA-EL-A4JW       TCGA-EL-A4JX 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A4JZ       TCGA-EL-A4K0       TCGA-EL-A4K1       TCGA-EL-A4K2 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A4K4       TCGA-EL-A4K6       TCGA-EL-A4K7       TCGA-EL-A4K9 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EL-A4KD       TCGA-EL-A4KG       TCGA-EL-A4KH       TCGA-EL-A4KI 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A1CU       TCGA-EM-A1CV       TCGA-EM-A1CW       TCGA-EM-A1YA 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A1YB       TCGA-EM-A1YD       TCGA-EM-A1YE       TCGA-EM-A22I 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A22J       TCGA-EM-A22K       TCGA-EM-A22L       TCGA-EM-A22M 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A22N       TCGA-EM-A22O       TCGA-EM-A22P       TCGA-EM-A22Q 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A2CJ       TCGA-EM-A2CK       TCGA-EM-A2CL       TCGA-EM-A2CN 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A2CO       TCGA-EM-A2CP       TCGA-EM-A2CQ       TCGA-EM-A2CR 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A2CS       TCGA-EM-A2CT       TCGA-EM-A2CU       TCGA-EM-A2OV 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A2OW       TCGA-EM-A2OX       TCGA-EM-A2OZ       TCGA-EM-A2P0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A2P1       TCGA-EM-A2P2       TCGA-EM-A2P3       TCGA-EM-A3AI 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A3AJ       TCGA-EM-A3AK       TCGA-EM-A3AL       TCGA-EM-A3AN 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A3AO       TCGA-EM-A3AP       TCGA-EM-A3AQ       TCGA-EM-A3AR 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A3FJ       TCGA-EM-A3FK       TCGA-EM-A3FM       TCGA-EM-A3FN 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A3FO       TCGA-EM-A3FP       TCGA-EM-A3FQ       TCGA-EM-A3FR 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A3O3       TCGA-EM-A3O6       TCGA-EM-A3O7       TCGA-EM-A3O8 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A3O9       TCGA-EM-A3OA       TCGA-EM-A3ST       TCGA-EM-A3SU 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A3SZ       TCGA-EM-A4FF       TCGA-EM-A4FH       TCGA-EM-A4FM 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A4FN       TCGA-EM-A4FO       TCGA-EM-A4FQ       TCGA-EM-A4FR 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-EM-A4FU       TCGA-EM-A4FV       TCGA-EM-A4G1       TCGA-ET-A25G 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A25J       TCGA-ET-A25K       TCGA-ET-A25O       TCGA-ET-A25R 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A2MX       TCGA-ET-A2MY       TCGA-ET-A2MZ       TCGA-ET-A2N0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A2N1       TCGA-ET-A2N3       TCGA-ET-A2N5       TCGA-ET-A39I 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A39J       TCGA-ET-A39K       TCGA-ET-A39M       TCGA-ET-A39N 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A39O       TCGA-ET-A39P       TCGA-ET-A39R       TCGA-ET-A39S 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A39T       TCGA-ET-A3BN       TCGA-ET-A3BO       TCGA-ET-A3BP 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A3BQ       TCGA-ET-A3BS       TCGA-ET-A3BU       TCGA-ET-A3BV 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A3BW       TCGA-ET-A3BX       TCGA-ET-A3DO       TCGA-ET-A3DP 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A3DQ       TCGA-ET-A3DR       TCGA-ET-A3DS       TCGA-ET-A3DT 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A3DU       TCGA-ET-A3DV       TCGA-ET-A40P       TCGA-ET-A40Q 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A40R       TCGA-ET-A40S       TCGA-ET-A40T       TCGA-ET-A4KN 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-ET-A4KQ       TCGA-FE-A22Z       TCGA-FE-A230       TCGA-FE-A231 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FE-A232       TCGA-FE-A233       TCGA-FE-A234       TCGA-FE-A235 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FE-A236       TCGA-FE-A237       TCGA-FE-A23A       TCGA-FE-A3PA 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FE-A3PB       TCGA-FE-A3PC       TCGA-FE-A3PD       TCGA-FK-A3S3 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FK-A3SB       TCGA-FK-A3SD       TCGA-FK-A3SE       TCGA-FK-A3SG 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FK-A3SH       TCGA-FK-A4UB       TCGA-FY-A2QD       TCGA-FY-A3BL 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FY-A3I4       TCGA-FY-A3I5       TCGA-FY-A3NM       TCGA-FY-A3NN 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FY-A3NP       TCGA-FY-A3ON       TCGA-FY-A3R6       TCGA-FY-A3R7 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FY-A3R8       TCGA-FY-A3R9       TCGA-FY-A3RA       TCGA-FY-A3TY 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FY-A3W9       TCGA-FY-A3WA       TCGA-FY-A3YR       TCGA-FY-A40K 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FY-A40L       TCGA-FY-A40M       TCGA-FY-A40N       TCGA-FY-A4B0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-FY-A4B3       TCGA-FY-A4B4       TCGA-FY-A76V       TCGA-GE-A2C6 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-H2-A26U       TCGA-H2-A2K9       TCGA-H2-A3RH       TCGA-H2-A3RI 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-H2-A421       TCGA-H2-A422       TCGA-IM-A3EB       TCGA-IM-A3ED 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-IM-A3U2       TCGA-IM-A3U3       TCGA-IM-A41Y       TCGA-IM-A41Z 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-IM-A420       TCGA-IM-A4EB       TCGA-J8-A3NZ       TCGA-J8-A3O0 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-J8-A3O1       TCGA-J8-A3O2       TCGA-J8-A3YD       TCGA-J8-A3YE 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-J8-A3YF       TCGA-J8-A3YG       TCGA-J8-A3YH       TCGA-J8-A42S 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-J8-A4HW       TCGA-KS-A41F       TCGA-KS-A41I       TCGA-KS-A41J 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-KS-A4I1       TCGA-KS-A4I3       TCGA-KS-A4I5       TCGA-KS-A4I7 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-KS-A4I9       TCGA-KS-A4IC       TCGA-KS-A4ID       TCGA-L6-A4EP 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-L6-A4EQ       TCGA-L6-A4ET       TCGA-L6-A4EU       TCGA-MK-A4N6 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 
      TCGA-MK-A4N7       TCGA-MK-A4N9       TCGA-MK-A84Z       TCGA-QD-A8IV 
"ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" "ARMCX3 WILD-TYPE" 

Clustering(31) Variable = RYR1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RYR1 MUTATED        3      0      4
  RYR1 WILD-TYPE    128    137    216
D31V1, multiclass
        clus
vv       RYR1 MUTATED RYR1 WILD-TYPE
  CLUS_1            3            128
  CLUS_2            0            137
  CLUS_3            4            216
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RYR1 MUTATED        1      2      2      1      1
  RYR1 WILD-TYPE     45    142     82     39    177
D31V2, multiclass
        clus
vv       RYR1 MUTATED RYR1 WILD-TYPE
  CLUS_1            1             45
  CLUS_2            2            142
  CLUS_3            2             82
  CLUS_4            1             39
  CLUS_5            1            177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RYR1 MUTATED        1      0      0      0
  RYR1 WILD-TYPE     62     61     40     51
D31V3, multiclass
[1] "Remove cluster labels:" "RYR1 MUTATED"          
clus
  RYR1 MUTATED RYR1 WILD-TYPE 
             1            214 
    TCGA-BJ-A0YZ     TCGA-BJ-A0Z0     TCGA-BJ-A0Z2     TCGA-BJ-A0Z3 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-BJ-A0Z9     TCGA-BJ-A0ZA     TCGA-BJ-A0ZB     TCGA-BJ-A0ZC 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-BJ-A0ZE     TCGA-BJ-A0ZG     TCGA-BJ-A0ZJ     TCGA-BJ-A18Y 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-BJ-A18Z     TCGA-BJ-A191     TCGA-BJ-A192     TCGA-BJ-A28R 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-BJ-A28S     TCGA-BJ-A28T     TCGA-BJ-A28V     TCGA-BJ-A28Z 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-BJ-A290     TCGA-BJ-A2N7     TCGA-BJ-A2N9     TCGA-BJ-A2NA 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-BJ-A2P4     TCGA-BJ-A3EZ     TCGA-BJ-A3F0     TCGA-CE-A13K 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-CE-A27D     TCGA-CE-A3MD     TCGA-CE-A3ME     TCGA-DE-A0Y2 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DE-A2OL     TCGA-DE-A3KN     TCGA-DJ-A13M     TCGA-DJ-A13O 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A13R     TCGA-DJ-A13S     TCGA-DJ-A13V     TCGA-DJ-A13W 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A13X     TCGA-DJ-A1QD     TCGA-DJ-A1QE     TCGA-DJ-A1QF 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A1QG     TCGA-DJ-A1QI     TCGA-DJ-A1QL     TCGA-DJ-A1QM 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A1QN     TCGA-DJ-A1QO     TCGA-DJ-A2PN     TCGA-DJ-A2PO 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A2PP     TCGA-DJ-A2PQ     TCGA-DJ-A2PR     TCGA-DJ-A2PS 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A2PU     TCGA-DJ-A2PV     TCGA-DJ-A2PW     TCGA-DJ-A2PY 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A2PZ     TCGA-DJ-A2Q0     TCGA-DJ-A2Q1     TCGA-DJ-A2Q2 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A2Q4     TCGA-DJ-A2Q5     TCGA-DJ-A2Q6     TCGA-DJ-A2Q7 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A2Q8     TCGA-DJ-A2Q9     TCGA-DJ-A2QA     TCGA-DJ-A2QB 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A2QC     TCGA-DO-A1JZ     TCGA-DO-A1K0     TCGA-E3-A3DY 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-E3-A3DZ     TCGA-E3-A3E0     TCGA-E3-A3E1     TCGA-E3-A3E3 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-E3-A3E5     TCGA-E8-A2EA     TCGA-E8-A2JQ     TCGA-EL-A3CL 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3CM     TCGA-EL-A3CN     TCGA-EL-A3CO     TCGA-EL-A3CP 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3CR     TCGA-EL-A3CS     TCGA-EL-A3CT     TCGA-EL-A3CU 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3CV     TCGA-EL-A3CW     TCGA-EL-A3CX     TCGA-EL-A3CY 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3CZ     TCGA-EL-A3D0     TCGA-EL-A3D1     TCGA-EL-A3D4 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3D5     TCGA-EL-A3D6     TCGA-EL-A3GO     TCGA-EL-A3GP 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3GQ     TCGA-EL-A3GR     TCGA-EL-A3GS     TCGA-EL-A3GU 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3GW     TCGA-EL-A3GX     TCGA-EL-A3GY     TCGA-EL-A3GZ 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3H1     TCGA-EL-A3H2     TCGA-EL-A3H3     TCGA-EL-A3H4 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3H5     TCGA-EL-A3H7     TCGA-EL-A3H8     TCGA-EL-A3MW 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3MX     TCGA-EL-A3MY     TCGA-EL-A3MZ     TCGA-EL-A3N2 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3N3     TCGA-EM-A1CT     TCGA-EM-A1CU     TCGA-EM-A1CV 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A1CW     TCGA-EM-A1YA     TCGA-EM-A1YB     TCGA-EM-A1YC 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A1YD     TCGA-EM-A1YE     TCGA-EM-A22I     TCGA-EM-A22J 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A22L     TCGA-EM-A22M     TCGA-EM-A22O     TCGA-EM-A22Q 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A2CJ     TCGA-EM-A2CK     TCGA-EM-A2CL     TCGA-EM-A2CN 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A2CO     TCGA-EM-A2CP     TCGA-EM-A2CQ     TCGA-EM-A2CR 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A2CS     TCGA-EM-A2CU     TCGA-EM-A2OV     TCGA-EM-A2OY 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A2P1     TCGA-EM-A3AI     TCGA-EM-A3AJ     TCGA-EM-A3AL 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A3AN     TCGA-EM-A3AO     TCGA-EM-A3AP     TCGA-EM-A3FJ 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A3FL     TCGA-EM-A3FN     TCGA-EM-A3FO     TCGA-EM-A3FP 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A25G     TCGA-ET-A25O     TCGA-ET-A2MY     TCGA-ET-A2MZ 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A2N0     TCGA-ET-A2N1     TCGA-ET-A2N4     TCGA-ET-A2N5 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A39I     TCGA-ET-A39J     TCGA-ET-A39L     TCGA-ET-A39M 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A39N     TCGA-ET-A39P     TCGA-ET-A39R     TCGA-ET-A39T 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A3BN     TCGA-ET-A3BP     TCGA-ET-A3BS     TCGA-ET-A3BT 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A3BU     TCGA-ET-A3BV     TCGA-ET-A3BW     TCGA-ET-A3BX 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A3DO     TCGA-ET-A3DP     TCGA-ET-A3DS     TCGA-ET-A3DT 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A3DV     TCGA-ET-A3DW     TCGA-FE-A22Z     TCGA-FE-A230 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-FE-A231     TCGA-FE-A232     TCGA-FE-A233     TCGA-FE-A234 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-FE-A235     TCGA-FE-A236     TCGA-FE-A237     TCGA-FE-A23A 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-FY-A2QD     TCGA-FY-A3BL     TCGA-FY-A3ON     TCGA-GE-A2C6 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-H2-A2K9     TCGA-IM-A3EB     TCGA-IM-A3ED     TCGA-J8-A3NZ 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-J8-A3O0     TCGA-J8-A3O1 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RYR1 MUTATED        0      0      0      0      1      0      0
  RYR1 WILD-TYPE     46     27     31     26     48     27      9
D31V4, multiclass
[1] "Remove cluster labels:" "RYR1 MUTATED"          
clus
  RYR1 MUTATED RYR1 WILD-TYPE 
             1            214 
    TCGA-BJ-A0YZ     TCGA-BJ-A0Z0     TCGA-BJ-A0Z2     TCGA-BJ-A0Z3 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-BJ-A0Z9     TCGA-BJ-A0ZA     TCGA-BJ-A0ZB     TCGA-BJ-A0ZC 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-BJ-A0ZE     TCGA-BJ-A0ZG     TCGA-BJ-A0ZJ     TCGA-BJ-A18Y 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-BJ-A18Z     TCGA-BJ-A191     TCGA-BJ-A192     TCGA-BJ-A28R 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-BJ-A28S     TCGA-BJ-A28T     TCGA-BJ-A28V     TCGA-BJ-A28Z 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-BJ-A290     TCGA-BJ-A2N7     TCGA-BJ-A2N9     TCGA-BJ-A2NA 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-BJ-A2P4     TCGA-BJ-A3EZ     TCGA-BJ-A3F0     TCGA-CE-A13K 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-CE-A27D     TCGA-CE-A3MD     TCGA-CE-A3ME     TCGA-DE-A0Y2 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DE-A2OL     TCGA-DE-A3KN     TCGA-DJ-A13M     TCGA-DJ-A13O 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A13R     TCGA-DJ-A13S     TCGA-DJ-A13V     TCGA-DJ-A13W 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A13X     TCGA-DJ-A1QD     TCGA-DJ-A1QE     TCGA-DJ-A1QF 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A1QG     TCGA-DJ-A1QI     TCGA-DJ-A1QL     TCGA-DJ-A1QM 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A1QN     TCGA-DJ-A1QO     TCGA-DJ-A2PN     TCGA-DJ-A2PO 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A2PP     TCGA-DJ-A2PQ     TCGA-DJ-A2PR     TCGA-DJ-A2PS 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A2PU     TCGA-DJ-A2PV     TCGA-DJ-A2PW     TCGA-DJ-A2PY 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A2PZ     TCGA-DJ-A2Q0     TCGA-DJ-A2Q1     TCGA-DJ-A2Q2 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A2Q4     TCGA-DJ-A2Q5     TCGA-DJ-A2Q6     TCGA-DJ-A2Q7 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A2Q8     TCGA-DJ-A2Q9     TCGA-DJ-A2QA     TCGA-DJ-A2QB 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-DJ-A2QC     TCGA-DO-A1JZ     TCGA-DO-A1K0     TCGA-E3-A3DY 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-E3-A3DZ     TCGA-E3-A3E0     TCGA-E3-A3E1     TCGA-E3-A3E3 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-E3-A3E5     TCGA-E8-A2EA     TCGA-E8-A2JQ     TCGA-EL-A3CL 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3CM     TCGA-EL-A3CN     TCGA-EL-A3CO     TCGA-EL-A3CP 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3CR     TCGA-EL-A3CS     TCGA-EL-A3CT     TCGA-EL-A3CU 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3CV     TCGA-EL-A3CW     TCGA-EL-A3CX     TCGA-EL-A3CY 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3CZ     TCGA-EL-A3D0     TCGA-EL-A3D1     TCGA-EL-A3D4 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3D5     TCGA-EL-A3D6     TCGA-EL-A3GO     TCGA-EL-A3GP 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3GQ     TCGA-EL-A3GR     TCGA-EL-A3GS     TCGA-EL-A3GU 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3GW     TCGA-EL-A3GX     TCGA-EL-A3GY     TCGA-EL-A3GZ 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3H1     TCGA-EL-A3H2     TCGA-EL-A3H3     TCGA-EL-A3H4 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3H5     TCGA-EL-A3H7     TCGA-EL-A3H8     TCGA-EL-A3MW 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3MX     TCGA-EL-A3MY     TCGA-EL-A3MZ     TCGA-EL-A3N2 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EL-A3N3     TCGA-EM-A1CT     TCGA-EM-A1CU     TCGA-EM-A1CV 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A1CW     TCGA-EM-A1YA     TCGA-EM-A1YB     TCGA-EM-A1YC 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A1YD     TCGA-EM-A1YE     TCGA-EM-A22I     TCGA-EM-A22J 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A22L     TCGA-EM-A22M     TCGA-EM-A22O     TCGA-EM-A22Q 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A2CJ     TCGA-EM-A2CK     TCGA-EM-A2CL     TCGA-EM-A2CN 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A2CO     TCGA-EM-A2CP     TCGA-EM-A2CQ     TCGA-EM-A2CR 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A2CS     TCGA-EM-A2CU     TCGA-EM-A2OV     TCGA-EM-A2OY 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A2P1     TCGA-EM-A3AI     TCGA-EM-A3AJ     TCGA-EM-A3AL 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A3AN     TCGA-EM-A3AO     TCGA-EM-A3AP     TCGA-EM-A3FJ 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-EM-A3FL     TCGA-EM-A3FN     TCGA-EM-A3FO     TCGA-EM-A3FP 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A25G     TCGA-ET-A25O     TCGA-ET-A2MY     TCGA-ET-A2MZ 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A2N0     TCGA-ET-A2N1     TCGA-ET-A2N4     TCGA-ET-A2N5 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A39I     TCGA-ET-A39J     TCGA-ET-A39L     TCGA-ET-A39M 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A39N     TCGA-ET-A39P     TCGA-ET-A39R     TCGA-ET-A39T 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A3BN     TCGA-ET-A3BP     TCGA-ET-A3BS     TCGA-ET-A3BT 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A3BU     TCGA-ET-A3BV     TCGA-ET-A3BW     TCGA-ET-A3BX 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A3DO     TCGA-ET-A3DP     TCGA-ET-A3DS     TCGA-ET-A3DT 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-ET-A3DV     TCGA-ET-A3DW     TCGA-FE-A22Z     TCGA-FE-A230 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-FE-A231     TCGA-FE-A232     TCGA-FE-A233     TCGA-FE-A234 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-FE-A235     TCGA-FE-A236     TCGA-FE-A237     TCGA-FE-A23A 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-FY-A2QD     TCGA-FY-A3BL     TCGA-FY-A3ON     TCGA-GE-A2C6 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-H2-A2K9     TCGA-IM-A3EB     TCGA-IM-A3ED     TCGA-J8-A3NZ 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
    TCGA-J8-A3O0     TCGA-J8-A3O1 
"RYR1 WILD-TYPE" "RYR1 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RYR1 MUTATED        2      3      1      1
  RYR1 WILD-TYPE    152    161     57    113
D31V5, multiclass
        clus
vv       RYR1 MUTATED RYR1 WILD-TYPE
  CLUS_1            2            152
  CLUS_2            3            161
  CLUS_3            1             57
  CLUS_4            1            113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RYR1 MUTATED        2      2      1      1      1
  RYR1 WILD-TYPE    101    129     84     94     75
D31V6, multiclass
        clus
vv       RYR1 MUTATED RYR1 WILD-TYPE
  CLUS_1            2            101
  CLUS_2            2            129
  CLUS_3            1             84
  CLUS_4            1             94
  CLUS_5            1             75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RYR1 MUTATED        3      1      2      1
  RYR1 WILD-TYPE    160    142    117     65
D31V7, multiclass
        clus
vv       RYR1 MUTATED RYR1 WILD-TYPE
  CLUS_1            3            160
  CLUS_2            1            142
  CLUS_3            2            117
  CLUS_4            1             65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RYR1 MUTATED        3      1      3
  RYR1 WILD-TYPE    173    124    187
D31V8, multiclass
        clus
vv       RYR1 MUTATED RYR1 WILD-TYPE
  CLUS_1            3            173
  CLUS_2            1            124
  CLUS_3            3            187
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RYR1 MUTATED        3      1      2      1
  RYR1 WILD-TYPE    126    121    104    104
D31V9, multiclass
        clus
vv       RYR1 MUTATED RYR1 WILD-TYPE
  CLUS_1            3            126
  CLUS_2            1            121
  CLUS_3            2            104
  CLUS_4            1            104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  RYR1 MUTATED        3      2      2
  RYR1 WILD-TYPE    157    116    182
D31V10, multiclass
        clus
vv       RYR1 MUTATED RYR1 WILD-TYPE
  CLUS_1            3            157
  CLUS_2            2            116
  CLUS_3            2            182
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(32) Variable = TNRC18 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        0      1      3
  TNRC18 WILD-TYPE    131    136    217
D32V1, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              0              131
  CLUS_2              1              136
  CLUS_3              3              217
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC18 MUTATED        1      1      1      0      1
  TNRC18 WILD-TYPE     45    143     83     40    177
D32V2, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              1               45
  CLUS_2              1              143
  CLUS_3              1               83
  CLUS_4              0               40
  CLUS_5              1              177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        1      0      0      0
  TNRC18 WILD-TYPE     62     61     40     51
D32V3, multiclass
[1] "Remove cluster labels:" "TNRC18 MUTATED"        
clus
  TNRC18 MUTATED TNRC18 WILD-TYPE 
               1              214 
      TCGA-BJ-A0YZ       TCGA-BJ-A0Z0       TCGA-BJ-A0Z2       TCGA-BJ-A0Z3 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-BJ-A0Z9       TCGA-BJ-A0ZA       TCGA-BJ-A0ZB       TCGA-BJ-A0ZC 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-BJ-A0ZE       TCGA-BJ-A0ZG       TCGA-BJ-A0ZJ       TCGA-BJ-A18Y 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-BJ-A18Z       TCGA-BJ-A191       TCGA-BJ-A192       TCGA-BJ-A28R 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-BJ-A28S       TCGA-BJ-A28T       TCGA-BJ-A28V       TCGA-BJ-A28Z 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-BJ-A290       TCGA-BJ-A2N7       TCGA-BJ-A2N9       TCGA-BJ-A2NA 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-BJ-A2P4       TCGA-BJ-A3EZ       TCGA-BJ-A3F0       TCGA-CE-A13K 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-CE-A27D       TCGA-CE-A3MD       TCGA-CE-A3ME       TCGA-DE-A0Y2 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DE-A2OL       TCGA-DE-A3KN       TCGA-DJ-A13M       TCGA-DJ-A13O 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A13R       TCGA-DJ-A13S       TCGA-DJ-A13V       TCGA-DJ-A13W 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A13X       TCGA-DJ-A1QD       TCGA-DJ-A1QE       TCGA-DJ-A1QF 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A1QG       TCGA-DJ-A1QI       TCGA-DJ-A1QL       TCGA-DJ-A1QM 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A1QN       TCGA-DJ-A1QO       TCGA-DJ-A2PN       TCGA-DJ-A2PO 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A2PP       TCGA-DJ-A2PQ       TCGA-DJ-A2PR       TCGA-DJ-A2PS 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A2PU       TCGA-DJ-A2PV       TCGA-DJ-A2PW       TCGA-DJ-A2PY 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A2PZ       TCGA-DJ-A2Q0       TCGA-DJ-A2Q1       TCGA-DJ-A2Q2 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A2Q4       TCGA-DJ-A2Q5       TCGA-DJ-A2Q6       TCGA-DJ-A2Q7 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A2Q8       TCGA-DJ-A2Q9       TCGA-DJ-A2QA       TCGA-DJ-A2QB 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A2QC       TCGA-DO-A1JZ       TCGA-DO-A1K0       TCGA-E3-A3DY 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-E3-A3DZ       TCGA-E3-A3E0       TCGA-E3-A3E1       TCGA-E3-A3E3 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-E3-A3E5       TCGA-E8-A2EA       TCGA-E8-A2JQ       TCGA-EL-A3CL 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3CM       TCGA-EL-A3CN       TCGA-EL-A3CO       TCGA-EL-A3CP 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3CR       TCGA-EL-A3CS       TCGA-EL-A3CT       TCGA-EL-A3CU 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3CV       TCGA-EL-A3CW       TCGA-EL-A3CX       TCGA-EL-A3CY 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3CZ       TCGA-EL-A3D0       TCGA-EL-A3D1       TCGA-EL-A3D4 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3D5       TCGA-EL-A3D6       TCGA-EL-A3GO       TCGA-EL-A3GP 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3GQ       TCGA-EL-A3GR       TCGA-EL-A3GS       TCGA-EL-A3GU 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3GV       TCGA-EL-A3GW       TCGA-EL-A3GX       TCGA-EL-A3GY 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3GZ       TCGA-EL-A3H1       TCGA-EL-A3H2       TCGA-EL-A3H3 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3H4       TCGA-EL-A3H5       TCGA-EL-A3H7       TCGA-EL-A3H8 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3MW       TCGA-EL-A3MX       TCGA-EL-A3MY       TCGA-EL-A3MZ 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3N2       TCGA-EL-A3N3       TCGA-EM-A1CT       TCGA-EM-A1CU 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A1CV       TCGA-EM-A1CW       TCGA-EM-A1YA       TCGA-EM-A1YB 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A1YC       TCGA-EM-A1YD       TCGA-EM-A22I       TCGA-EM-A22J 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A22L       TCGA-EM-A22M       TCGA-EM-A22O       TCGA-EM-A22Q 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A2CJ       TCGA-EM-A2CK       TCGA-EM-A2CL       TCGA-EM-A2CN 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A2CO       TCGA-EM-A2CP       TCGA-EM-A2CQ       TCGA-EM-A2CR 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A2CS       TCGA-EM-A2CU       TCGA-EM-A2OV       TCGA-EM-A2OY 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A2P1       TCGA-EM-A3AI       TCGA-EM-A3AJ       TCGA-EM-A3AL 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A3AN       TCGA-EM-A3AO       TCGA-EM-A3AP       TCGA-EM-A3FJ 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A3FL       TCGA-EM-A3FN       TCGA-EM-A3FO       TCGA-EM-A3FP 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A25G       TCGA-ET-A25O       TCGA-ET-A2MY       TCGA-ET-A2MZ 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A2N0       TCGA-ET-A2N1       TCGA-ET-A2N4       TCGA-ET-A2N5 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A39I       TCGA-ET-A39J       TCGA-ET-A39L       TCGA-ET-A39M 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A39N       TCGA-ET-A39P       TCGA-ET-A39R       TCGA-ET-A39T 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A3BN       TCGA-ET-A3BP       TCGA-ET-A3BS       TCGA-ET-A3BT 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A3BU       TCGA-ET-A3BV       TCGA-ET-A3BW       TCGA-ET-A3BX 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A3DO       TCGA-ET-A3DP       TCGA-ET-A3DS       TCGA-ET-A3DT 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A3DV       TCGA-ET-A3DW       TCGA-FE-A22Z       TCGA-FE-A230 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-FE-A231       TCGA-FE-A232       TCGA-FE-A233       TCGA-FE-A234 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-FE-A235       TCGA-FE-A236       TCGA-FE-A237       TCGA-FE-A23A 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-FY-A2QD       TCGA-FY-A3BL       TCGA-FY-A3ON       TCGA-GE-A2C6 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-H2-A2K9       TCGA-IM-A3EB       TCGA-IM-A3ED       TCGA-J8-A3NZ 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-J8-A3O0       TCGA-J8-A3O1 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TNRC18 MUTATED        1      0      0      0      0      0      0
  TNRC18 WILD-TYPE     45     27     31     26     49     27      9
D32V4, multiclass
[1] "Remove cluster labels:" "TNRC18 MUTATED"        
clus
  TNRC18 MUTATED TNRC18 WILD-TYPE 
               1              214 
      TCGA-BJ-A0YZ       TCGA-BJ-A0Z0       TCGA-BJ-A0Z2       TCGA-BJ-A0Z3 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-BJ-A0Z9       TCGA-BJ-A0ZA       TCGA-BJ-A0ZB       TCGA-BJ-A0ZC 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-BJ-A0ZE       TCGA-BJ-A0ZG       TCGA-BJ-A0ZJ       TCGA-BJ-A18Y 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-BJ-A18Z       TCGA-BJ-A191       TCGA-BJ-A192       TCGA-BJ-A28R 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-BJ-A28S       TCGA-BJ-A28T       TCGA-BJ-A28V       TCGA-BJ-A28Z 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-BJ-A290       TCGA-BJ-A2N7       TCGA-BJ-A2N9       TCGA-BJ-A2NA 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-BJ-A2P4       TCGA-BJ-A3EZ       TCGA-BJ-A3F0       TCGA-CE-A13K 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-CE-A27D       TCGA-CE-A3MD       TCGA-CE-A3ME       TCGA-DE-A0Y2 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DE-A2OL       TCGA-DE-A3KN       TCGA-DJ-A13M       TCGA-DJ-A13O 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A13R       TCGA-DJ-A13S       TCGA-DJ-A13V       TCGA-DJ-A13W 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A13X       TCGA-DJ-A1QD       TCGA-DJ-A1QE       TCGA-DJ-A1QF 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A1QG       TCGA-DJ-A1QI       TCGA-DJ-A1QL       TCGA-DJ-A1QM 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A1QN       TCGA-DJ-A1QO       TCGA-DJ-A2PN       TCGA-DJ-A2PO 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A2PP       TCGA-DJ-A2PQ       TCGA-DJ-A2PR       TCGA-DJ-A2PS 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A2PU       TCGA-DJ-A2PV       TCGA-DJ-A2PW       TCGA-DJ-A2PY 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A2PZ       TCGA-DJ-A2Q0       TCGA-DJ-A2Q1       TCGA-DJ-A2Q2 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A2Q4       TCGA-DJ-A2Q5       TCGA-DJ-A2Q6       TCGA-DJ-A2Q7 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A2Q8       TCGA-DJ-A2Q9       TCGA-DJ-A2QA       TCGA-DJ-A2QB 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-DJ-A2QC       TCGA-DO-A1JZ       TCGA-DO-A1K0       TCGA-E3-A3DY 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-E3-A3DZ       TCGA-E3-A3E0       TCGA-E3-A3E1       TCGA-E3-A3E3 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-E3-A3E5       TCGA-E8-A2EA       TCGA-E8-A2JQ       TCGA-EL-A3CL 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3CM       TCGA-EL-A3CN       TCGA-EL-A3CO       TCGA-EL-A3CP 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3CR       TCGA-EL-A3CS       TCGA-EL-A3CT       TCGA-EL-A3CU 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3CV       TCGA-EL-A3CW       TCGA-EL-A3CX       TCGA-EL-A3CY 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3CZ       TCGA-EL-A3D0       TCGA-EL-A3D1       TCGA-EL-A3D4 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3D5       TCGA-EL-A3D6       TCGA-EL-A3GO       TCGA-EL-A3GP 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3GQ       TCGA-EL-A3GR       TCGA-EL-A3GS       TCGA-EL-A3GU 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3GV       TCGA-EL-A3GW       TCGA-EL-A3GX       TCGA-EL-A3GY 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3GZ       TCGA-EL-A3H1       TCGA-EL-A3H2       TCGA-EL-A3H3 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3H4       TCGA-EL-A3H5       TCGA-EL-A3H7       TCGA-EL-A3H8 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3MW       TCGA-EL-A3MX       TCGA-EL-A3MY       TCGA-EL-A3MZ 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EL-A3N2       TCGA-EL-A3N3       TCGA-EM-A1CT       TCGA-EM-A1CU 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A1CV       TCGA-EM-A1CW       TCGA-EM-A1YA       TCGA-EM-A1YB 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A1YC       TCGA-EM-A1YD       TCGA-EM-A22I       TCGA-EM-A22J 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A22L       TCGA-EM-A22M       TCGA-EM-A22O       TCGA-EM-A22Q 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A2CJ       TCGA-EM-A2CK       TCGA-EM-A2CL       TCGA-EM-A2CN 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A2CO       TCGA-EM-A2CP       TCGA-EM-A2CQ       TCGA-EM-A2CR 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A2CS       TCGA-EM-A2CU       TCGA-EM-A2OV       TCGA-EM-A2OY 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A2P1       TCGA-EM-A3AI       TCGA-EM-A3AJ       TCGA-EM-A3AL 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A3AN       TCGA-EM-A3AO       TCGA-EM-A3AP       TCGA-EM-A3FJ 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-EM-A3FL       TCGA-EM-A3FN       TCGA-EM-A3FO       TCGA-EM-A3FP 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A25G       TCGA-ET-A25O       TCGA-ET-A2MY       TCGA-ET-A2MZ 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A2N0       TCGA-ET-A2N1       TCGA-ET-A2N4       TCGA-ET-A2N5 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A39I       TCGA-ET-A39J       TCGA-ET-A39L       TCGA-ET-A39M 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A39N       TCGA-ET-A39P       TCGA-ET-A39R       TCGA-ET-A39T 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A3BN       TCGA-ET-A3BP       TCGA-ET-A3BS       TCGA-ET-A3BT 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A3BU       TCGA-ET-A3BV       TCGA-ET-A3BW       TCGA-ET-A3BX 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A3DO       TCGA-ET-A3DP       TCGA-ET-A3DS       TCGA-ET-A3DT 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-ET-A3DV       TCGA-ET-A3DW       TCGA-FE-A22Z       TCGA-FE-A230 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-FE-A231       TCGA-FE-A232       TCGA-FE-A233       TCGA-FE-A234 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-FE-A235       TCGA-FE-A236       TCGA-FE-A237       TCGA-FE-A23A 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-FY-A2QD       TCGA-FY-A3BL       TCGA-FY-A3ON       TCGA-GE-A2C6 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-H2-A2K9       TCGA-IM-A3EB       TCGA-IM-A3ED       TCGA-J8-A3NZ 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
      TCGA-J8-A3O0       TCGA-J8-A3O1 
"TNRC18 WILD-TYPE" "TNRC18 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        1      2      1      0
  TNRC18 WILD-TYPE    153    162     57    114
D32V5, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              1              153
  CLUS_2              2              162
  CLUS_3              1               57
  CLUS_4              0              114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TNRC18 MUTATED        0      1      2      0      1
  TNRC18 WILD-TYPE    103    130     83     95     75
D32V6, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              0              103
  CLUS_2              1              130
  CLUS_3              2               83
  CLUS_4              0               95
  CLUS_5              1               75
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        2      1      0      1
  TNRC18 WILD-TYPE    161    142    119     65
D32V7, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              2              161
  CLUS_2              1              142
  CLUS_3              0              119
  CLUS_4              1               65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        2      1      1
  TNRC18 WILD-TYPE    174    124    189
D32V8, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              2              174
  CLUS_2              1              124
  CLUS_3              1              189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TNRC18 MUTATED        1      1      0      1
  TNRC18 WILD-TYPE    128    121    106    104
D32V9, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              1              128
  CLUS_2              1              121
  CLUS_3              0              106
  CLUS_4              1              104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  TNRC18 MUTATED        2      1      0
  TNRC18 WILD-TYPE    158    117    184
D32V10, multiclass
        clus
vv       TNRC18 MUTATED TNRC18 WILD-TYPE
  CLUS_1              2              158
  CLUS_2              1              117
  CLUS_3              0              184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(33) Variable = TMEM90B MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM90B MUTATED        1      0      2
  TMEM90B WILD-TYPE    130    137    218
D33V1, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               1               130
  CLUS_2               0               137
  CLUS_3               2               218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM90B MUTATED        0      1      1      0      1
  TMEM90B WILD-TYPE     46    143     83     40    177
D33V2, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               0                46
  CLUS_2               1               143
  CLUS_3               1                83
  CLUS_4               0                40
  CLUS_5               1               177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM90B MUTATED        0      0      0      0
  TMEM90B WILD-TYPE     63     61     40     51
D33V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  TMEM90B MUTATED        0      0      0      0      0      0      0
  TMEM90B WILD-TYPE     46     27     31     26     49     27      9
D33V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM90B MUTATED        1      1      0      1
  TMEM90B WILD-TYPE    153    163     58    113
D33V5, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               1               153
  CLUS_2               1               163
  CLUS_3               0                58
  CLUS_4               1               113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  TMEM90B MUTATED        1      1      0      1      0
  TMEM90B WILD-TYPE    102    130     85     94     76
D33V6, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               1               102
  CLUS_2               1               130
  CLUS_3               0                85
  CLUS_4               1                94
  CLUS_5               0                76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM90B MUTATED        1      1      1      0
  TMEM90B WILD-TYPE    162    142    118     66
D33V7, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               1               162
  CLUS_2               1               142
  CLUS_3               1               118
  CLUS_4               0                66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM90B MUTATED        1      1      1
  TMEM90B WILD-TYPE    175    124    189
D33V8, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               1               175
  CLUS_2               1               124
  CLUS_3               1               189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TMEM90B MUTATED        1      1      0      1
  TMEM90B WILD-TYPE    128    121    106    104
D33V9, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               1               128
  CLUS_2               1               121
  CLUS_3               0               106
  CLUS_4               1               104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  TMEM90B MUTATED        1      1      1
  TMEM90B WILD-TYPE    159    117    183
D33V10, multiclass
        clus
vv       TMEM90B MUTATED TMEM90B WILD-TYPE
  CLUS_1               1               159
  CLUS_2               1               117
  CLUS_3               1               183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(34) Variable = ZC3H11A MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        2      1      0
  ZC3H11A WILD-TYPE    129    136    220
D34V1, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2               129
  CLUS_2               1               136
  CLUS_3               0               220
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H11A MUTATED        0      0      0      1      2
  ZC3H11A WILD-TYPE     46    144     84     39    176
D34V2, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               0                46
  CLUS_2               0               144
  CLUS_3               0                84
  CLUS_4               1                39
  CLUS_5               2               176
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        0      0      0      0
  ZC3H11A WILD-TYPE     63     61     40     51
D34V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  ZC3H11A MUTATED        0      0      0      0      0      0      0
  ZC3H11A WILD-TYPE     46     27     31     26     49     27      9
D34V4, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        3      0      0      0
  ZC3H11A WILD-TYPE    151    164     58    114
D34V5, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               3               151
  CLUS_2               0               164
  CLUS_3               0                58
  CLUS_4               0               114
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  ZC3H11A MUTATED        0      0      0      0      3
  ZC3H11A WILD-TYPE    103    131     85     95     73
D34V6, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               0               103
  CLUS_2               0               131
  CLUS_3               0                85
  CLUS_4               0                95
  CLUS_5               3                73
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        2      0      1      0
  ZC3H11A WILD-TYPE    161    143    118     66
D34V7, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2               161
  CLUS_2               0               143
  CLUS_3               1               118
  CLUS_4               0                66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        2      0      1
  ZC3H11A WILD-TYPE    174    125    189
D34V8, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2               174
  CLUS_2               0               125
  CLUS_3               1               189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  ZC3H11A MUTATED        2      0      1      0
  ZC3H11A WILD-TYPE    127    122    105    105
D34V9, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2               127
  CLUS_2               0               122
  CLUS_3               1               105
  CLUS_4               0               105
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  ZC3H11A MUTATED        2      0      1
  ZC3H11A WILD-TYPE    158    118    183
D34V10, multiclass
        clus
vv       ZC3H11A MUTATED ZC3H11A WILD-TYPE
  CLUS_1               2               158
  CLUS_2               0               118
  CLUS_3               1               183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(35) Variable = RANBP9 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RANBP9 MUTATED        1      0      2
  RANBP9 WILD-TYPE    130    137    218
D35V1, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              1              130
  CLUS_2              0              137
  CLUS_3              2              218
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RANBP9 MUTATED        0      0      1      0      2
  RANBP9 WILD-TYPE     46    144     83     40    176
D35V2, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              0               46
  CLUS_2              0              144
  CLUS_3              1               83
  CLUS_4              0               40
  CLUS_5              2              176
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP9 MUTATED        0      0      0      2
  RANBP9 WILD-TYPE     63     61     40     49
D35V3, multiclass
[1] "Remove cluster labels:" "RANBP9 MUTATED"        
clus
  RANBP9 MUTATED RANBP9 WILD-TYPE 
               2              213 
      TCGA-BJ-A0YZ       TCGA-BJ-A0Z0       TCGA-BJ-A0Z2       TCGA-BJ-A0Z3 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-BJ-A0Z9       TCGA-BJ-A0ZA       TCGA-BJ-A0ZB       TCGA-BJ-A0ZC 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-BJ-A0ZE       TCGA-BJ-A0ZG       TCGA-BJ-A0ZJ       TCGA-BJ-A18Y 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-BJ-A18Z       TCGA-BJ-A191       TCGA-BJ-A192       TCGA-BJ-A28R 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-BJ-A28S       TCGA-BJ-A28T       TCGA-BJ-A28V       TCGA-BJ-A28Z 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-BJ-A290       TCGA-BJ-A2N7       TCGA-BJ-A2N9       TCGA-BJ-A2NA 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-BJ-A2P4       TCGA-BJ-A3EZ       TCGA-BJ-A3F0       TCGA-CE-A13K 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-CE-A27D       TCGA-CE-A3MD       TCGA-CE-A3ME       TCGA-DE-A0Y2 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DE-A2OL       TCGA-DE-A3KN       TCGA-DJ-A13M       TCGA-DJ-A13O 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A13R       TCGA-DJ-A13S       TCGA-DJ-A13V       TCGA-DJ-A13W 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A13X       TCGA-DJ-A1QD       TCGA-DJ-A1QE       TCGA-DJ-A1QF 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A1QG       TCGA-DJ-A1QI       TCGA-DJ-A1QL       TCGA-DJ-A1QM 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A1QN       TCGA-DJ-A1QO       TCGA-DJ-A2PN       TCGA-DJ-A2PO 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A2PP       TCGA-DJ-A2PQ       TCGA-DJ-A2PR       TCGA-DJ-A2PS 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A2PU       TCGA-DJ-A2PV       TCGA-DJ-A2PW       TCGA-DJ-A2PY 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A2PZ       TCGA-DJ-A2Q0       TCGA-DJ-A2Q1       TCGA-DJ-A2Q2 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A2Q4       TCGA-DJ-A2Q5       TCGA-DJ-A2Q6       TCGA-DJ-A2Q7 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A2Q8       TCGA-DJ-A2Q9       TCGA-DJ-A2QA       TCGA-DJ-A2QB 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A2QC       TCGA-DO-A1JZ       TCGA-DO-A1K0       TCGA-E3-A3DY 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-E3-A3DZ       TCGA-E3-A3E0       TCGA-E3-A3E1       TCGA-E3-A3E3 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-E3-A3E5       TCGA-E8-A2EA       TCGA-E8-A2JQ       TCGA-EL-A3CL 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3CM       TCGA-EL-A3CN       TCGA-EL-A3CO       TCGA-EL-A3CP 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3CR       TCGA-EL-A3CS       TCGA-EL-A3CT       TCGA-EL-A3CU 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3CV       TCGA-EL-A3CW       TCGA-EL-A3CX       TCGA-EL-A3CY 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3CZ       TCGA-EL-A3D0       TCGA-EL-A3D1       TCGA-EL-A3D4 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3D5       TCGA-EL-A3D6       TCGA-EL-A3GO       TCGA-EL-A3GP 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3GQ       TCGA-EL-A3GR       TCGA-EL-A3GS       TCGA-EL-A3GU 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3GV       TCGA-EL-A3GW       TCGA-EL-A3GX       TCGA-EL-A3GY 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3GZ       TCGA-EL-A3H1       TCGA-EL-A3H2       TCGA-EL-A3H3 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3H4       TCGA-EL-A3H5       TCGA-EL-A3H7       TCGA-EL-A3H8 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3MW       TCGA-EL-A3MX       TCGA-EL-A3MZ       TCGA-EL-A3N2 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3N3       TCGA-EM-A1CT       TCGA-EM-A1CU       TCGA-EM-A1CV 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A1CW       TCGA-EM-A1YA       TCGA-EM-A1YB       TCGA-EM-A1YC 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A1YD       TCGA-EM-A1YE       TCGA-EM-A22I       TCGA-EM-A22J 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A22L       TCGA-EM-A22M       TCGA-EM-A22O       TCGA-EM-A22Q 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A2CJ       TCGA-EM-A2CK       TCGA-EM-A2CL       TCGA-EM-A2CN 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A2CO       TCGA-EM-A2CP       TCGA-EM-A2CQ       TCGA-EM-A2CR 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A2CS       TCGA-EM-A2CU       TCGA-EM-A2OV       TCGA-EM-A2OY 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A2P1       TCGA-EM-A3AI       TCGA-EM-A3AJ       TCGA-EM-A3AL 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A3AN       TCGA-EM-A3AO       TCGA-EM-A3AP       TCGA-EM-A3FJ 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A3FL       TCGA-EM-A3FN       TCGA-EM-A3FP       TCGA-ET-A25G 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A25O       TCGA-ET-A2MY       TCGA-ET-A2MZ       TCGA-ET-A2N0 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A2N1       TCGA-ET-A2N4       TCGA-ET-A2N5       TCGA-ET-A39I 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A39J       TCGA-ET-A39L       TCGA-ET-A39M       TCGA-ET-A39N 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A39P       TCGA-ET-A39R       TCGA-ET-A39T       TCGA-ET-A3BN 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A3BP       TCGA-ET-A3BS       TCGA-ET-A3BT       TCGA-ET-A3BU 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A3BV       TCGA-ET-A3BW       TCGA-ET-A3BX       TCGA-ET-A3DO 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A3DP       TCGA-ET-A3DS       TCGA-ET-A3DT       TCGA-ET-A3DV 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A3DW       TCGA-FE-A22Z       TCGA-FE-A230       TCGA-FE-A231 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-FE-A232       TCGA-FE-A233       TCGA-FE-A234       TCGA-FE-A235 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-FE-A236       TCGA-FE-A237       TCGA-FE-A23A       TCGA-FY-A2QD 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-FY-A3BL       TCGA-FY-A3ON       TCGA-GE-A2C6       TCGA-H2-A2K9 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-IM-A3EB       TCGA-IM-A3ED       TCGA-J8-A3NZ       TCGA-J8-A3O0 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-J8-A3O1 
"RANBP9 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  RANBP9 MUTATED        0      0      0      0      1      0      1
  RANBP9 WILD-TYPE     46     27     31     26     48     27      8
D35V4, multiclass
[1] "Remove cluster labels:" "RANBP9 MUTATED"        
clus
  RANBP9 MUTATED RANBP9 WILD-TYPE 
               2              213 
      TCGA-BJ-A0YZ       TCGA-BJ-A0Z0       TCGA-BJ-A0Z2       TCGA-BJ-A0Z3 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-BJ-A0Z9       TCGA-BJ-A0ZA       TCGA-BJ-A0ZB       TCGA-BJ-A0ZC 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-BJ-A0ZE       TCGA-BJ-A0ZG       TCGA-BJ-A0ZJ       TCGA-BJ-A18Y 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-BJ-A18Z       TCGA-BJ-A191       TCGA-BJ-A192       TCGA-BJ-A28R 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-BJ-A28S       TCGA-BJ-A28T       TCGA-BJ-A28V       TCGA-BJ-A28Z 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-BJ-A290       TCGA-BJ-A2N7       TCGA-BJ-A2N9       TCGA-BJ-A2NA 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-BJ-A2P4       TCGA-BJ-A3EZ       TCGA-BJ-A3F0       TCGA-CE-A13K 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-CE-A27D       TCGA-CE-A3MD       TCGA-CE-A3ME       TCGA-DE-A0Y2 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DE-A2OL       TCGA-DE-A3KN       TCGA-DJ-A13M       TCGA-DJ-A13O 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A13R       TCGA-DJ-A13S       TCGA-DJ-A13V       TCGA-DJ-A13W 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A13X       TCGA-DJ-A1QD       TCGA-DJ-A1QE       TCGA-DJ-A1QF 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A1QG       TCGA-DJ-A1QI       TCGA-DJ-A1QL       TCGA-DJ-A1QM 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A1QN       TCGA-DJ-A1QO       TCGA-DJ-A2PN       TCGA-DJ-A2PO 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A2PP       TCGA-DJ-A2PQ       TCGA-DJ-A2PR       TCGA-DJ-A2PS 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A2PU       TCGA-DJ-A2PV       TCGA-DJ-A2PW       TCGA-DJ-A2PY 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A2PZ       TCGA-DJ-A2Q0       TCGA-DJ-A2Q1       TCGA-DJ-A2Q2 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A2Q4       TCGA-DJ-A2Q5       TCGA-DJ-A2Q6       TCGA-DJ-A2Q7 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A2Q8       TCGA-DJ-A2Q9       TCGA-DJ-A2QA       TCGA-DJ-A2QB 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-DJ-A2QC       TCGA-DO-A1JZ       TCGA-DO-A1K0       TCGA-E3-A3DY 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-E3-A3DZ       TCGA-E3-A3E0       TCGA-E3-A3E1       TCGA-E3-A3E3 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-E3-A3E5       TCGA-E8-A2EA       TCGA-E8-A2JQ       TCGA-EL-A3CL 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3CM       TCGA-EL-A3CN       TCGA-EL-A3CO       TCGA-EL-A3CP 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3CR       TCGA-EL-A3CS       TCGA-EL-A3CT       TCGA-EL-A3CU 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3CV       TCGA-EL-A3CW       TCGA-EL-A3CX       TCGA-EL-A3CY 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3CZ       TCGA-EL-A3D0       TCGA-EL-A3D1       TCGA-EL-A3D4 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3D5       TCGA-EL-A3D6       TCGA-EL-A3GO       TCGA-EL-A3GP 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3GQ       TCGA-EL-A3GR       TCGA-EL-A3GS       TCGA-EL-A3GU 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3GV       TCGA-EL-A3GW       TCGA-EL-A3GX       TCGA-EL-A3GY 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3GZ       TCGA-EL-A3H1       TCGA-EL-A3H2       TCGA-EL-A3H3 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3H4       TCGA-EL-A3H5       TCGA-EL-A3H7       TCGA-EL-A3H8 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3MW       TCGA-EL-A3MX       TCGA-EL-A3MZ       TCGA-EL-A3N2 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EL-A3N3       TCGA-EM-A1CT       TCGA-EM-A1CU       TCGA-EM-A1CV 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A1CW       TCGA-EM-A1YA       TCGA-EM-A1YB       TCGA-EM-A1YC 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A1YD       TCGA-EM-A1YE       TCGA-EM-A22I       TCGA-EM-A22J 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A22L       TCGA-EM-A22M       TCGA-EM-A22O       TCGA-EM-A22Q 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A2CJ       TCGA-EM-A2CK       TCGA-EM-A2CL       TCGA-EM-A2CN 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A2CO       TCGA-EM-A2CP       TCGA-EM-A2CQ       TCGA-EM-A2CR 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A2CS       TCGA-EM-A2CU       TCGA-EM-A2OV       TCGA-EM-A2OY 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A2P1       TCGA-EM-A3AI       TCGA-EM-A3AJ       TCGA-EM-A3AL 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A3AN       TCGA-EM-A3AO       TCGA-EM-A3AP       TCGA-EM-A3FJ 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-EM-A3FL       TCGA-EM-A3FN       TCGA-EM-A3FP       TCGA-ET-A25G 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A25O       TCGA-ET-A2MY       TCGA-ET-A2MZ       TCGA-ET-A2N0 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A2N1       TCGA-ET-A2N4       TCGA-ET-A2N5       TCGA-ET-A39I 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A39J       TCGA-ET-A39L       TCGA-ET-A39M       TCGA-ET-A39N 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A39P       TCGA-ET-A39R       TCGA-ET-A39T       TCGA-ET-A3BN 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A3BP       TCGA-ET-A3BS       TCGA-ET-A3BT       TCGA-ET-A3BU 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A3BV       TCGA-ET-A3BW       TCGA-ET-A3BX       TCGA-ET-A3DO 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A3DP       TCGA-ET-A3DS       TCGA-ET-A3DT       TCGA-ET-A3DV 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-ET-A3DW       TCGA-FE-A22Z       TCGA-FE-A230       TCGA-FE-A231 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-FE-A232       TCGA-FE-A233       TCGA-FE-A234       TCGA-FE-A235 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-FE-A236       TCGA-FE-A237       TCGA-FE-A23A       TCGA-FY-A2QD 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-FY-A3BL       TCGA-FY-A3ON       TCGA-GE-A2C6       TCGA-H2-A2K9 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-IM-A3EB       TCGA-IM-A3ED       TCGA-J8-A3NZ       TCGA-J8-A3O0 
"RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" "RANBP9 WILD-TYPE" 
      TCGA-J8-A3O1 
"RANBP9 WILD-TYPE" 
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP9 MUTATED        2      0      0      1
  RANBP9 WILD-TYPE    152    164     58    113
D35V5, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              2              152
  CLUS_2              0              164
  CLUS_3              0               58
  CLUS_4              1              113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  RANBP9 MUTATED        1      0      0      2      0
  RANBP9 WILD-TYPE    102    131     85     93     76
D35V6, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              1              102
  CLUS_2              0              131
  CLUS_3              0               85
  CLUS_4              2               93
  CLUS_5              0               76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP9 MUTATED        2      0      1      0
  RANBP9 WILD-TYPE    161    143    118     66
D35V7, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              2              161
  CLUS_2              0              143
  CLUS_3              1              118
  CLUS_4              0               66
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RANBP9 MUTATED        2      0      1
  RANBP9 WILD-TYPE    174    125    189
D35V8, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              2              174
  CLUS_2              0              125
  CLUS_3              1              189
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RANBP9 MUTATED        1      0      0      2
  RANBP9 WILD-TYPE    128    122    106    103
D35V9, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              1              128
  CLUS_2              0              122
  CLUS_3              0              106
  CLUS_4              2              103
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  RANBP9 MUTATED        2      0      1
  RANBP9 WILD-TYPE    158    118    183
D35V10, multiclass
        clus
vv       RANBP9 MUTATED RANBP9 WILD-TYPE
  CLUS_1              2              158
  CLUS_2              0              118
  CLUS_3              1              183
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(36) Variable = DGCR8 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DGCR8 MUTATED        1      0      1
  DGCR8 WILD-TYPE    130    137    219
D36V1, multiclass
[1] "Remove cluster labels:" "DGCR8 MUTATED"         
clus
  DGCR8 MUTATED DGCR8 WILD-TYPE 
              2             486 
     TCGA-4C-A93U      TCGA-BJ-A0YZ      TCGA-BJ-A0Z0      TCGA-BJ-A0Z2 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-BJ-A0Z3      TCGA-BJ-A0Z9      TCGA-BJ-A0ZA      TCGA-BJ-A0ZB 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-BJ-A0ZC      TCGA-BJ-A0ZE      TCGA-BJ-A0ZG      TCGA-BJ-A0ZH 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-BJ-A0ZJ      TCGA-BJ-A18Y      TCGA-BJ-A18Z      TCGA-BJ-A191 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-BJ-A192      TCGA-BJ-A28R      TCGA-BJ-A28S      TCGA-BJ-A28T 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-BJ-A28V      TCGA-BJ-A28X      TCGA-BJ-A28Z      TCGA-BJ-A290 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-BJ-A2N7      TCGA-BJ-A2N8      TCGA-BJ-A2N9      TCGA-BJ-A2NA 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-BJ-A2P4      TCGA-BJ-A3EZ      TCGA-BJ-A3F0      TCGA-BJ-A3PR 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-BJ-A3PT      TCGA-BJ-A3PU      TCGA-BJ-A45D      TCGA-BJ-A45E 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-BJ-A45F      TCGA-BJ-A45G      TCGA-BJ-A45H      TCGA-BJ-A45I 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-BJ-A45J      TCGA-BJ-A45K      TCGA-BJ-A4O8      TCGA-BJ-A4O9 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-CE-A13K      TCGA-CE-A27D      TCGA-CE-A3MD      TCGA-CE-A3ME 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-CE-A481      TCGA-CE-A482      TCGA-CE-A483      TCGA-CE-A484 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-CE-A485      TCGA-DE-A0XZ      TCGA-DE-A0Y2      TCGA-DE-A0Y3 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DE-A2OL      TCGA-DE-A3KN      TCGA-DE-A4M8      TCGA-DE-A4M9 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DE-A4MA      TCGA-DE-A4MB      TCGA-DE-A4MC      TCGA-DE-A4MD 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DE-A69J      TCGA-DE-A69K      TCGA-DE-A7U5      TCGA-DJ-A13L 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A13M      TCGA-DJ-A13O      TCGA-DJ-A13P      TCGA-DJ-A13R 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A13S      TCGA-DJ-A13T      TCGA-DJ-A13U      TCGA-DJ-A13V 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A13W      TCGA-DJ-A13X      TCGA-DJ-A1QD      TCGA-DJ-A1QE 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A1QF      TCGA-DJ-A1QG      TCGA-DJ-A1QH      TCGA-DJ-A1QI 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A1QL      TCGA-DJ-A1QM      TCGA-DJ-A1QN      TCGA-DJ-A1QO 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A1QQ      TCGA-DJ-A2PN      TCGA-DJ-A2PO      TCGA-DJ-A2PP 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A2PQ      TCGA-DJ-A2PR      TCGA-DJ-A2PS      TCGA-DJ-A2PT 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A2PU      TCGA-DJ-A2PV      TCGA-DJ-A2PW      TCGA-DJ-A2PX 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A2PY      TCGA-DJ-A2PZ      TCGA-DJ-A2Q0      TCGA-DJ-A2Q1 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A2Q2      TCGA-DJ-A2Q3      TCGA-DJ-A2Q4      TCGA-DJ-A2Q5 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A2Q7      TCGA-DJ-A2Q8      TCGA-DJ-A2Q9      TCGA-DJ-A2QA 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A2QB      TCGA-DJ-A2QC      TCGA-DJ-A3UK      TCGA-DJ-A3UM 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A3UN      TCGA-DJ-A3UO      TCGA-DJ-A3UP      TCGA-DJ-A3UQ 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A3UR      TCGA-DJ-A3US      TCGA-DJ-A3UT      TCGA-DJ-A3UU 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A3UW      TCGA-DJ-A3UX      TCGA-DJ-A3UY      TCGA-DJ-A3UZ 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A3V0      TCGA-DJ-A3V2      TCGA-DJ-A3V3      TCGA-DJ-A3V4 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A3V5      TCGA-DJ-A3V7      TCGA-DJ-A3V8      TCGA-DJ-A3V9 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A3VA      TCGA-DJ-A3VB      TCGA-DJ-A3VD      TCGA-DJ-A3VE 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A3VF      TCGA-DJ-A3VG      TCGA-DJ-A3VI      TCGA-DJ-A3VJ 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A3VK      TCGA-DJ-A3VL      TCGA-DJ-A3VM      TCGA-DJ-A4UL 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A4UP      TCGA-DJ-A4UQ      TCGA-DJ-A4UR      TCGA-DJ-A4UT 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A4UW      TCGA-DJ-A4V0      TCGA-DJ-A4V2      TCGA-DJ-A4V4 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-DJ-A4V5      TCGA-DO-A1JZ      TCGA-DO-A1K0      TCGA-DO-A2HM 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-E3-A3DY      TCGA-E3-A3DZ      TCGA-E3-A3E0      TCGA-E3-A3E1 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-E3-A3E2      TCGA-E3-A3E3      TCGA-E3-A3E5      TCGA-E8-A242 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-E8-A2EA      TCGA-E8-A3X7      TCGA-E8-A413      TCGA-E8-A414 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-E8-A415      TCGA-E8-A416      TCGA-E8-A417      TCGA-E8-A418 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-E8-A419      TCGA-E8-A432      TCGA-E8-A433      TCGA-E8-A434 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-E8-A436      TCGA-E8-A437      TCGA-E8-A438      TCGA-E8-A44K 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-E8-A44M      TCGA-EL-A3CL      TCGA-EL-A3CM      TCGA-EL-A3CN 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3CO      TCGA-EL-A3CP      TCGA-EL-A3CR      TCGA-EL-A3CS 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3CT      TCGA-EL-A3CU      TCGA-EL-A3CV      TCGA-EL-A3CW 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3CX      TCGA-EL-A3CY      TCGA-EL-A3CZ      TCGA-EL-A3D0 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3D1      TCGA-EL-A3D4      TCGA-EL-A3D5      TCGA-EL-A3D6 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3GO      TCGA-EL-A3GP      TCGA-EL-A3GQ      TCGA-EL-A3GR 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3GS      TCGA-EL-A3GU      TCGA-EL-A3GV      TCGA-EL-A3GW 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3GX      TCGA-EL-A3GY      TCGA-EL-A3GZ      TCGA-EL-A3H1 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3H2      TCGA-EL-A3H3      TCGA-EL-A3H4      TCGA-EL-A3H5 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3H7      TCGA-EL-A3H8      TCGA-EL-A3MW      TCGA-EL-A3MX 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3MY      TCGA-EL-A3MZ      TCGA-EL-A3N2      TCGA-EL-A3N3 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3T0      TCGA-EL-A3T1      TCGA-EL-A3T2      TCGA-EL-A3T3 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3T6      TCGA-EL-A3T7      TCGA-EL-A3T8      TCGA-EL-A3T9 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3TA      TCGA-EL-A3TB      TCGA-EL-A3ZG      TCGA-EL-A3ZH 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3ZK      TCGA-EL-A3ZL      TCGA-EL-A3ZM      TCGA-EL-A3ZN 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3ZO      TCGA-EL-A3ZP      TCGA-EL-A3ZQ      TCGA-EL-A3ZR 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A3ZS      TCGA-EL-A3ZT      TCGA-EL-A4JV      TCGA-EL-A4JW 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A4JX      TCGA-EL-A4JZ      TCGA-EL-A4K0      TCGA-EL-A4K1 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A4K2      TCGA-EL-A4K4      TCGA-EL-A4K6      TCGA-EL-A4K7 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A4K9      TCGA-EL-A4KD      TCGA-EL-A4KG      TCGA-EL-A4KH 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EL-A4KI      TCGA-EM-A1CS      TCGA-EM-A1CT      TCGA-EM-A1CU 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A1CV      TCGA-EM-A1CW      TCGA-EM-A1YA      TCGA-EM-A1YB 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A1YC      TCGA-EM-A1YD      TCGA-EM-A1YE      TCGA-EM-A22I 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A22J      TCGA-EM-A22K      TCGA-EM-A22L      TCGA-EM-A22M 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A22N      TCGA-EM-A22O      TCGA-EM-A22P      TCGA-EM-A22Q 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A2CJ      TCGA-EM-A2CK      TCGA-EM-A2CL      TCGA-EM-A2CN 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A2CO      TCGA-EM-A2CP      TCGA-EM-A2CQ      TCGA-EM-A2CT 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A2CU      TCGA-EM-A2OV      TCGA-EM-A2OW      TCGA-EM-A2OX 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A2OY      TCGA-EM-A2OZ      TCGA-EM-A2P0      TCGA-EM-A2P1 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A2P2      TCGA-EM-A2P3      TCGA-EM-A3AI      TCGA-EM-A3AJ 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A3AK      TCGA-EM-A3AL      TCGA-EM-A3AN      TCGA-EM-A3AO 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A3AQ      TCGA-EM-A3AR      TCGA-EM-A3FJ      TCGA-EM-A3FK 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A3FL      TCGA-EM-A3FM      TCGA-EM-A3FN      TCGA-EM-A3FO 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A3FP      TCGA-EM-A3FQ      TCGA-EM-A3FR      TCGA-EM-A3O3 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A3O6      TCGA-EM-A3O7      TCGA-EM-A3O8      TCGA-EM-A3O9 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A3OA      TCGA-EM-A3OB      TCGA-EM-A3ST      TCGA-EM-A3SU 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A3SX      TCGA-EM-A3SY      TCGA-EM-A3SZ      TCGA-EM-A4FF 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A4FH      TCGA-EM-A4FK      TCGA-EM-A4FM      TCGA-EM-A4FN 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A4FO      TCGA-EM-A4FQ      TCGA-EM-A4FR      TCGA-EM-A4FU 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-EM-A4FV      TCGA-EM-A4G1      TCGA-ET-A25G      TCGA-ET-A25I 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-ET-A25J      TCGA-ET-A25K      TCGA-ET-A25O      TCGA-ET-A25R 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-ET-A2MX      TCGA-ET-A2MY      TCGA-ET-A2MZ      TCGA-ET-A2N0 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-ET-A2N1      TCGA-ET-A2N3      TCGA-ET-A2N4      TCGA-ET-A2N5 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-ET-A39I      TCGA-ET-A39J      TCGA-ET-A39K      TCGA-ET-A39L 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-ET-A39M      TCGA-ET-A39N      TCGA-ET-A39O      TCGA-ET-A39P 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-ET-A39R      TCGA-ET-A39S      TCGA-ET-A39T      TCGA-ET-A3BN 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-ET-A3BO      TCGA-ET-A3BP      TCGA-ET-A3BQ      TCGA-ET-A3BS 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-ET-A3BT      TCGA-ET-A3BU      TCGA-ET-A3BV      TCGA-ET-A3BW 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-ET-A3BX      TCGA-ET-A3DO      TCGA-ET-A3DP      TCGA-ET-A3DQ 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-ET-A3DR      TCGA-ET-A3DS      TCGA-ET-A3DT      TCGA-ET-A3DU 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-ET-A3DV      TCGA-ET-A3DW      TCGA-ET-A40P      TCGA-ET-A40Q 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-ET-A40R      TCGA-ET-A40S      TCGA-ET-A40T      TCGA-ET-A4KN 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-ET-A4KQ      TCGA-FE-A22Z      TCGA-FE-A230      TCGA-FE-A231 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-FE-A232      TCGA-FE-A233      TCGA-FE-A234      TCGA-FE-A235 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-FE-A236      TCGA-FE-A237      TCGA-FE-A23A      TCGA-FE-A3PA 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-FE-A3PB      TCGA-FE-A3PC      TCGA-FE-A3PD      TCGA-FK-A3S3 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-FK-A3SB      TCGA-FK-A3SD      TCGA-FK-A3SE      TCGA-FK-A3SG 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-FK-A3SH      TCGA-FK-A4UB      TCGA-FY-A2QD      TCGA-FY-A3BL 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-FY-A3I4      TCGA-FY-A3I5      TCGA-FY-A3NM      TCGA-FY-A3NN 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-FY-A3ON      TCGA-FY-A3R6      TCGA-FY-A3R7      TCGA-FY-A3R8 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-FY-A3R9      TCGA-FY-A3RA      TCGA-FY-A3TY      TCGA-FY-A3W9 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-FY-A3WA      TCGA-FY-A3YR      TCGA-FY-A40K      TCGA-FY-A40L 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-FY-A40M      TCGA-FY-A40N      TCGA-FY-A4B0      TCGA-FY-A4B3 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-FY-A4B4      TCGA-FY-A76V      TCGA-GE-A2C6      TCGA-H2-A26U 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-H2-A2K9      TCGA-H2-A3RH      TCGA-H2-A3RI      TCGA-H2-A421 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-H2-A422      TCGA-IM-A3EB      TCGA-IM-A3ED      TCGA-IM-A3U2 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-IM-A3U3      TCGA-IM-A41Y      TCGA-IM-A41Z      TCGA-IM-A420 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-IM-A4EB      TCGA-J8-A3NZ      TCGA-J8-A3O0      TCGA-J8-A3O1 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-J8-A3O2      TCGA-J8-A3YD      TCGA-J8-A3YE      TCGA-J8-A3YF 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-J8-A3YG      TCGA-J8-A3YH      TCGA-J8-A42S      TCGA-J8-A4HW 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-J8-A4HY      TCGA-KS-A41F      TCGA-KS-A41I      TCGA-KS-A41J 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-KS-A41L      TCGA-KS-A4I1      TCGA-KS-A4I3      TCGA-KS-A4I5 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-KS-A4I7      TCGA-KS-A4I9      TCGA-KS-A4IB      TCGA-KS-A4IC 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-KS-A4ID      TCGA-L6-A4EP      TCGA-L6-A4EQ      TCGA-L6-A4ET 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-L6-A4EU      TCGA-MK-A4N6      TCGA-MK-A4N7      TCGA-MK-A4N9 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
     TCGA-MK-A84Z      TCGA-QD-A8IV 
"DGCR8 WILD-TYPE" "DGCR8 WILD-TYPE" 
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGCR8 MUTATED        0      2      0      0      1
  DGCR8 WILD-TYPE     46    142     84     40    177
D36V2, multiclass
        clus
vv       DGCR8 MUTATED DGCR8 WILD-TYPE
  CLUS_1             0              46
  CLUS_2             2             142
  CLUS_3             0              84
  CLUS_4             0              40
  CLUS_5             1             177
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGCR8 MUTATED        2      0      1      0
  DGCR8 WILD-TYPE     61     61     39     51
D36V3, multiclass
        clus
vv       DGCR8 MUTATED DGCR8 WILD-TYPE
  CLUS_1             2              61
  CLUS_2             0              61
  CLUS_3             1              39
  CLUS_4             0              51
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7
  DGCR8 MUTATED        2      1      0      0      0      0      0
  DGCR8 WILD-TYPE     44     26     31     26     49     27      9
D36V4, multiclass
        clus
vv       DGCR8 MUTATED DGCR8 WILD-TYPE
  CLUS_1             2              44
  CLUS_2             1              26
  CLUS_3             0              31
  CLUS_4             0              26
  CLUS_5             0              49
  CLUS_6             0              27
  CLUS_7             0               9
[1] 7 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGCR8 MUTATED        0      2      0      1
  DGCR8 WILD-TYPE    154    162     58    113
D36V5, multiclass
        clus
vv       DGCR8 MUTATED DGCR8 WILD-TYPE
  CLUS_1             0             154
  CLUS_2             2             162
  CLUS_3             0              58
  CLUS_4             1             113
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DGCR8 MUTATED        1      2      0      0      0
  DGCR8 WILD-TYPE    102    129     85     95     76
D36V6, multiclass
        clus
vv       DGCR8 MUTATED DGCR8 WILD-TYPE
  CLUS_1             1             102
  CLUS_2             2             129
  CLUS_3             0              85
  CLUS_4             0              95
  CLUS_5             0              76
[1] 5 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGCR8 MUTATED        1      1      0      1
  DGCR8 WILD-TYPE    162    142    119     65
D36V7, multiclass
        clus
vv       DGCR8 MUTATED DGCR8 WILD-TYPE
  CLUS_1             1             162
  CLUS_2             1             142
  CLUS_3             0             119
  CLUS_4             1              65
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DGCR8 MUTATED        1      2      0
  DGCR8 WILD-TYPE    175    123    190
D36V8, multiclass
        clus
vv       DGCR8 MUTATED DGCR8 WILD-TYPE
  CLUS_1             1             175
  CLUS_2             2             123
  CLUS_3             0             190
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DGCR8 MUTATED        1      1      0      1
  DGCR8 WILD-TYPE    128    121    106    104
D36V9, multiclass
        clus
vv       DGCR8 MUTATED DGCR8 WILD-TYPE
  CLUS_1             1             128
  CLUS_2             1             121
  CLUS_3             0             106
  CLUS_4             1             104
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  DGCR8 MUTATED        1      2      0
  DGCR8 WILD-TYPE    159    116    184
D36V10, multiclass
        clus
vv       DGCR8 MUTATED DGCR8 WILD-TYPE
  CLUS_1             1             159
  CLUS_2             2             116
  CLUS_3             0             184
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
